EstPhase |
Class EstPhase stores haplotype pairs, missing genotypes,
and unphased, nonmissing heteroygote genotypes for a list of samples.
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PhaseBaum1 |
Class PhaseBaum1 implements the forward and backward algorithms
for a haploid Li and Stephens hidden Markov model.
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PhaseData |
Class PhaseData contains the input data for phasing
genotypes.
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PhaseIbs |
Class PhaseIbs identifies haplotypes that share a long
IBS segment with a specified haplotype.
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PhaseLS |
Class PhaseLS estimated genotypes phase using
a haploid Li and Stephens hidden Markov model.
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PhaseStates |
Class PhaseStates identifies a rolling window of reference
haplotypes for a target sample.
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