Class SamReader.Type

  • Enclosing interface:
    SamReader

    public abstract static class SamReader.Type
    extends Object
    Describes a type of SAM file.
    • Constructor Detail

      • Type

        public Type()
    • Method Detail

      • name

        public abstract String name()
        A string representation of this type.
      • fileExtension

        public abstract String fileExtension()
        The recommended file extension for SAMs of this type, without a period.
      • indexExtension

        public abstract String indexExtension()
        The recommended file extension for SAM indexes of this type, without a period, or null if this type is not associated with indexes.