Class Scores
- java.lang.Object
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- htsjdk.samtools.cram.encoding.readfeatures.Scores
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- All Implemented Interfaces:
ReadFeature
,Serializable
public class Scores extends Object implements Serializable, ReadFeature
A read feature representing a contiguous stretch of quality scores in a read.- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description static byte
operator
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
equals(Object obj)
byte
getOperator()
Read features are distinguished by operator, similar to cigar operator.int
getPosition()
byte[]
getScores()
void
setPosition(int position)
void
setScores(byte[] scores)
String
toString()
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Field Detail
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operator
public static final byte operator
- See Also:
- Constant Field Values
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Method Detail
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getScores
public byte[] getScores()
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setScores
public void setScores(byte[] scores)
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getOperator
public byte getOperator()
Description copied from interface:ReadFeature
Read features are distinguished by operator, similar to cigar operator.- Specified by:
getOperator
in interfaceReadFeature
- Returns:
- type of the read feature
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getPosition
public int getPosition()
- Specified by:
getPosition
in interfaceReadFeature
- Returns:
- zero-based position in the read
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setPosition
public void setPosition(int position)
- Specified by:
setPosition
in interfaceReadFeature
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