Class RefSkip
- java.lang.Object
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- htsjdk.samtools.cram.encoding.readfeatures.RefSkip
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- All Implemented Interfaces:
ReadFeature
,Serializable
public class RefSkip extends Object implements Serializable, ReadFeature
A read feature representing a reference skip similar toCigarOperator.N
.- See Also:
- Serialized Form
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Field Summary
Fields Modifier and Type Field Description static byte
operator
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
equals(Object obj)
int
getLength()
byte
getOperator()
Read features are distinguished by operator, similar to cigar operator.int
getPosition()
void
setLength(int length)
void
setPosition(int position)
String
toString()
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Field Detail
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operator
public static final byte operator
- See Also:
- Constant Field Values
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Method Detail
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getOperator
public byte getOperator()
Description copied from interface:ReadFeature
Read features are distinguished by operator, similar to cigar operator.- Specified by:
getOperator
in interfaceReadFeature
- Returns:
- type of the read feature
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getPosition
public int getPosition()
- Specified by:
getPosition
in interfaceReadFeature
- Returns:
- zero-based position in the read
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setPosition
public void setPosition(int position)
- Specified by:
setPosition
in interfaceReadFeature
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getLength
public int getLength()
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setLength
public void setLength(int length)
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