Enum EncodingKey

    • Enum Constant Detail

      • BF_BitFlags

        public static final EncodingKey BF_BitFlags
      • AP_AlignmentPositionOffset

        public static final EncodingKey AP_AlignmentPositionOffset
      • FP_FeaturePosition

        public static final EncodingKey FP_FeaturePosition
      • FC_FeatureCode

        public static final EncodingKey FC_FeatureCode
      • QS_QualityScore

        public static final EncodingKey QS_QualityScore
      • DL_DeletionLength

        public static final EncodingKey DL_DeletionLength
      • TN_TagNameAndType

        public static final EncodingKey TN_TagNameAndType
      • NF_RecordsToNextFragment

        public static final EncodingKey NF_RecordsToNextFragment
      • RL_ReadLength

        public static final EncodingKey RL_ReadLength
      • RG_ReadGroup

        public static final EncodingKey RG_ReadGroup
      • MQ_MappingQualityScore

        public static final EncodingKey MQ_MappingQualityScore
      • RN_ReadName

        public static final EncodingKey RN_ReadName
      • NP_NextFragmentAlignmentStart

        public static final EncodingKey NP_NextFragmentAlignmentStart
      • TS_InsetSize

        public static final EncodingKey TS_InsetSize
      • FN_NumberOfReadFeatures

        public static final EncodingKey FN_NumberOfReadFeatures
      • BS_BaseSubstitutionCode

        public static final EncodingKey BS_BaseSubstitutionCode
      • IN_Insertion

        public static final EncodingKey IN_Insertion
      • TC_TagCount

        public static final EncodingKey TC_TagCount
      • MF_MateBitFlags

        public static final EncodingKey MF_MateBitFlags
      • NS_NextFragmentReferenceSequenceID

        public static final EncodingKey NS_NextFragmentReferenceSequenceID
      • CF_CompressionBitFlags

        public static final EncodingKey CF_CompressionBitFlags
      • TV_TestMark

        public static final EncodingKey TV_TestMark
      • TM_TestMark

        public static final EncodingKey TM_TestMark
      • TL_TagIdList

        public static final EncodingKey TL_TagIdList
      • RS_RefSkip

        public static final EncodingKey RS_RefSkip
      • SC_SoftClip

        public static final EncodingKey SC_SoftClip
      • HC_HardClip

        public static final EncodingKey HC_HardClip
      • PD_padding

        public static final EncodingKey PD_padding
    • Method Detail

      • values

        public static EncodingKey[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (EncodingKey c : EncodingKey.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static EncodingKey valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null
      • toTwoBytes

        public static byte[] toTwoBytes​(EncodingKey key)