libpappsomspp
Library for mass spectrometry
peptidestrparser.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 
25 #pragma once
26 
27 #include "peptide.h"
28 
29 namespace pappso
30 {
31 class PMSPP_LIB_DECL PeptideStrParser
32 {
33  public:
34  static PeptideSp parseString(const QString &pepstr);
35  static NoConstPeptideSp parseNoConstString(const QString &pepstr);
36 
37  private:
38  static void parseStringToPeptide(const QString &pepstr, Peptide &peptide);
39 
40  private:
41  static QRegExp _mod_parser;
42  static QRegExp _rx_psimod;
43  static QRegExp _rx_modmass;
44 
45  // static QMutex _mutex;
46 };
47 } // namespace pappso
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks
Definition: aa.cpp:39
peptide.h
peptide model
pappso::PeptideSp
std::shared_ptr< const Peptide > PeptideSp
Definition: aamodification.h:68
pappso::NoConstPeptideSp
std::shared_ptr< Peptide > NoConstPeptideSp
Definition: peptide.h:111