libpappsomspp
Library for mass spectrometry
timsdirectxicextractor.h
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/**
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* \file pappsomspp/vendors/tims/xicextractor/timsdirectxicextractor.h
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* \date 21/09/2019
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* \author Olivier Langella
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* \brief minimum functions to extract XICs from Tims Data
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*/
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/*******************************************************************************
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* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include "
timsxicextractorinterface.h
"
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namespace
pappso
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{
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/**
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* @todo write docs
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*/
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class
TimsDirectXicExtractor :
public
TimsXicExtractorInterface
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{
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public
:
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/**
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* Default constructor
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*/
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TimsDirectXicExtractor
(
const
TimsData
*mp_tims_data);
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/**
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* Destructor
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*/
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virtual
~TimsDirectXicExtractor
();
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protected
:
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virtual
void
extractTimsXicList
(std::vector<TimsXicStructure> &timsXicList,
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double
rtRange)
const override
;
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};
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}
// namespace pappso
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks
Definition:
aa.cpp:39
pappso::TimsDirectXicExtractor::extractTimsXicList
virtual void extractTimsXicList(std::vector< TimsXicStructure > &timsXicList, double rtRange) const override
extract XICs for given coordinates XICs are extracted given their coordinates : retention time target...
Definition:
timsdirectxicextractor.cpp:43
pappso::TimsDirectXicExtractor::TimsDirectXicExtractor
TimsDirectXicExtractor(const TimsData *mp_tims_data)
Definition:
timsdirectxicextractor.cpp:32
pappso::TimsDirectXicExtractor::~TimsDirectXicExtractor
virtual ~TimsDirectXicExtractor()
Definition:
timsdirectxicextractor.cpp:37
timsxicextractorinterface.h
minimum functions to extract XICs from Tims Data
pappso::TimsXicExtractorInterface::TimsData
friend TimsData
Definition:
timsxicextractorinterface.h:79
pappsomspp
vendors
tims
xicextractor
timsdirectxicextractor.h
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