libpappsomspp
Library for mass spectrometry
timsbindec.h
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/**
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* \file pappsomspp/vendors/tims/timsbindec.h
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* \date 23/08/2019
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* \author Olivier Langella
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* \brief binary file handler of Bruker's TimsTof raw data
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*/
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/*******************************************************************************
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* Copyright (c) 2019 Olivier Langella <Olivier.Langella@u-psud.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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******************************************************************************/
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#pragma once
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#include <QFile>
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#include <QFileInfo>
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#include "
timsframe.h
"
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namespace
pappso
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{
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/**
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* @todo write docs
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*/
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class
TimsBinDec
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{
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public
:
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/**
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* Default constructor
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*/
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TimsBinDec
(
const
QFileInfo &timsBinFile,
int
timsCompressionType);
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/**
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* Copy constructor
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*
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* @param other TODO
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*/
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TimsBinDec
(
const
TimsBinDec
&other);
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/**
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* Destructor
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*/
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~TimsBinDec
();
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// TimsFrameCstSPtr getTimsFrameCstSPtr(std::size_t timsId);
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TimsFrameSPtr
getTimsFrameSPtrByOffset
(std::size_t timsId,
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std::size_t timsOffset)
const
;
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private
:
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void
indexingFile
();
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private
:
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QString
m_timsBinFile
;
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// QMutex m_mutex;
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// std::vector<quint64> m_indexArray;
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};
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}
// namespace pappso
pappso::TimsBinDec::~TimsBinDec
~TimsBinDec()
Definition:
timsbindec.cpp:65
pappso::TimsFrameSPtr
std::shared_ptr< TimsFrame > TimsFrameSPtr
Definition:
timsframe.h:40
pappso::TimsBinDec
Definition:
timsbindec.h:41
pappso::TimsBinDec::getTimsFrameSPtrByOffset
TimsFrameSPtr getTimsFrameSPtrByOffset(std::size_t timsId, std::size_t timsOffset) const
Definition:
timsbindec.cpp:143
timsframe.h
handle a single Bruker's TimsTof frame
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition:
aa.cpp:39
pappso::TimsBinDec::m_timsBinFile
QString m_timsBinFile
Definition:
timsbindec.h:69
pappso::TimsBinDec::indexingFile
void indexingFile()
Definition:
timsbindec.cpp:71
pappso::TimsBinDec::TimsBinDec
TimsBinDec(const QFileInfo &timsBinFile, int timsCompressionType)
Definition:
timsbindec.cpp:35
pappsomspp
vendors
tims
timsbindec.h
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