libpappsomspp
Library for mass spectrometry
filterobopsimodtermdiffmono.cpp
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/*******************************************************************************
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* Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
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*
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* This file is part of the PAPPSOms++ library.
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*
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* PAPPSOms++ is free software: you can redistribute it and/or modify
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* it under the terms of the GNU General Public License as published by
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* the Free Software Foundation, either version 3 of the License, or
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* (at your option) any later version.
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*
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* PAPPSOms++ is distributed in the hope that it will be useful,
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* but WITHOUT ANY WARRANTY; without even the implied warranty of
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* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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* GNU General Public License for more details.
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*
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* You should have received a copy of the GNU General Public License
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* along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
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*
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* Contributors:
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* Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
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*implementation
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******************************************************************************/
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#include "
filterobopsimodtermdiffmono.h
"
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namespace
pappso
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{
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FilterOboPsiModTermDiffMono::FilterOboPsiModTermDiffMono
(
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OboPsiModHandlerInterface
&sink,
const
MzRange
&mass_range)
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: m_massRange(mass_range), m_sink(sink)
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{
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}
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FilterOboPsiModTermDiffMono::~FilterOboPsiModTermDiffMono
()
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{
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}
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void
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FilterOboPsiModTermDiffMono::setOboPsiModTerm
(
const
OboPsiModTerm
&term)
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{
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// qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
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if
(
m_massRange
.
contains
(term.
m_diffMono
))
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{
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m_sink
.
setOboPsiModTerm
(term);
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}
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}
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}
// namespace pappso
pappso::FilterOboPsiModTermDiffMono::m_sink
OboPsiModHandlerInterface & m_sink
Definition:
filterobopsimodtermdiffmono.h:38
pappso::FilterOboPsiModTermDiffMono::setOboPsiModTerm
void setOboPsiModTerm(const OboPsiModTerm &term) override
Definition:
filterobopsimodtermdiffmono.cpp:40
pappso::OboPsiModTerm
Definition:
obopsimod.h:36
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition:
aa.cpp:39
pappso::FilterOboPsiModTermDiffMono::FilterOboPsiModTermDiffMono
FilterOboPsiModTermDiffMono(OboPsiModHandlerInterface &sink, const MzRange &mass_range)
Definition:
filterobopsimodtermdiffmono.cpp:29
pappso::MzRange::contains
bool contains(pappso_double) const
Definition:
mzrange.cpp:102
pappso::OboPsiModHandlerInterface::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
pappso::OboPsiModHandlerInterface
Definition:
obopsimod.h:65
pappso::MzRange
Definition:
mzrange.h:46
pappso::FilterOboPsiModTermDiffMono::~FilterOboPsiModTermDiffMono
virtual ~FilterOboPsiModTermDiffMono()
Definition:
filterobopsimodtermdiffmono.cpp:35
pappso::FilterOboPsiModTermDiffMono::m_massRange
const MzRange m_massRange
Definition:
filterobopsimodtermdiffmono.h:37
filterobopsimodtermdiffmono.h
pappso::OboPsiModTerm::m_diffMono
pappso_double m_diffMono
Definition:
obopsimod.h:55
pappsomspp
obo
filterobopsimodtermdiffmono.cpp
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