libpappsomspp
Library for mass spectrometry
tracedetectionmoulon.h
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1 /*******************************************************************************
2  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3  *
4  * This file is part of the PAPPSOms++ library.
5  *
6  * PAPPSOms++ is free software: you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation, either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * PAPPSOms++ is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18  *
19  * Contributors:
20  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21  *implementation
22  ******************************************************************************/
23 
24 #pragma once
25 
26 
28 #include "../../processing/filters/filtermorpho.h"
29 
30 namespace pappso
31 {
32 
33 
35 {
36  private:
40 
41  public:
42  TraceDetectionMoulon(unsigned int smoothing_half_window_length,
43  pappso_double tic_start,
44  pappso_double tic_stop);
46  virtual ~TraceDetectionMoulon();
47 
48 
49  void setFilterMorphoMean(const FilterMorphoMean &smooth);
50  void setTicStart(double tic_start);
51  void setTicStop(double tic_stop);
52 
53  unsigned int getSmoothingHalfEdgeWindows() const;
54  pappso_double getTicStart() const;
55  pappso_double getTicStop() const;
56 
57 
58  void detect(const Trace &xic,
59  TraceDetectionSinkInterface &sink) const override;
60 };
61 
62 
63 } // namespace pappso
pappso::TraceDetectionInterface
Definition: tracedetectioninterface.h:44
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition: types.h:48
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso::TraceDetectionMoulon::m_xicFilterSmoothing
FilterMorphoMean m_xicFilterSmoothing
Definition: tracedetectionmoulon.h:37
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::TraceDetectionSinkInterface
Definition: tracedetectioninterface.h:38
tracedetectioninterface.h
pappso::Trace
A simple container of DataPoint instances.
Definition: trace.h:132
pappso::TraceDetectionMoulon::m_ticStart
pappso_double m_ticStart
Definition: tracedetectionmoulon.h:38
pappso::FilterMorphoMean
mean filter apply mean of y values inside the window : this results in a kind of smoothing
Definition: filtermorpho.h:197
pappso::TraceDetectionMoulon::m_ticStop
pappso_double m_ticStop
Definition: tracedetectionmoulon.h:39
pappso::TraceDetectionMoulon
Definition: tracedetectionmoulon.h:35