libpappsomspp
Library for mass spectrometry
grppeptideset.h
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1 
2 /*******************************************************************************
3  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
4  *
5  * This file is part of the PAPPSOms++ library.
6  *
7  * PAPPSOms++ is free software: you can redistribute it and/or modify
8  * it under the terms of the GNU General Public License as published by
9  * the Free Software Foundation, either version 3 of the License, or
10  * (at your option) any later version.
11  *
12  * PAPPSOms++ is distributed in the hope that it will be useful,
13  * but WITHOUT ANY WARRANTY; without even the implied warranty of
14  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15  * GNU General Public License for more details.
16  *
17  * You should have received a copy of the GNU General Public License
18  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
19  *
20  * Contributors:
21  * Olivier Langella <olivier.langella@u-psud.fr> - initial API and
22  *implementation
23  ******************************************************************************/
24 #pragma once
25 
26 #include <list>
27 
28 #include "grpprotein.h"
29 
30 namespace pappso
31 {
32 
33 class GrpMapPeptideToSubGroupSet;
34 
35 class GrpPeptideSet
36 {
37  friend class GrpMapPeptideToSubGroupSet;
38  friend class GrpMapPeptideToGroup;
39 
40  private:
41  std::list<GrpPeptide *> m_peptidePtrList;
42 
43  bool privContainsAll(const GrpPeptideSet &peptideSetIn) const;
44 
45  public:
46  GrpPeptideSet();
47  GrpPeptideSet(const GrpPeptideSet &other);
48  GrpPeptideSet(const GrpProtein *p_protein);
50  GrpPeptideSet &operator=(const GrpPeptideSet &other);
51  bool operator==(const GrpPeptideSet &other) const;
52 
53  unsigned int
54  size() const
55  {
56  return m_peptidePtrList.size();
57  };
58  bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const;
59  bool contains(const GrpPeptide *p_grp_peptide) const;
60  bool containsAll(const GrpPeptideSet &peptideSet) const;
61  bool containsAny(const GrpPeptideSet &peptideSet) const;
62  void addAll(const GrpPeptideSet &peptideSet);
63  const QString printInfos() const;
64 
65  void numbering();
66  void setGroupNumber(unsigned int i);
67 
68  std::vector<const GrpPeptide *> getGrpPeptideList() const;
69 };
70 } // namespace pappso
pappso::GrpPeptideSet::GrpMapPeptideToGroup
friend class GrpMapPeptideToGroup
Definition: grppeptideset.h:59
pappso::GrpPeptideSet::addAll
void addAll(const GrpPeptideSet &peptideSet)
Definition: grppeptideset.cpp:165
pappso::GrpPeptideSet::setGroupNumber
void setGroupNumber(unsigned int i)
Definition: grppeptideset.cpp:225
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::GrpPeptideSet::getGrpPeptideList
std::vector< const GrpPeptide * > getGrpPeptideList() const
Definition: grppeptideset.cpp:237
pappso::GrpPeptideSet
Definition: grppeptideset.h:57
pappso::GrpPeptide
Definition: grppeptide.h:64
pappso::GrpPeptideSet::privContainsAll
bool privContainsAll(const GrpPeptideSet &peptideSetIn) const
Definition: grppeptideset.cpp:100
pappso::GrpPeptideSet::contains
bool contains(const GrpPeptide *p_grp_peptide) const
Definition: grppeptideset.cpp:68
pappso::GrpPeptideSet::containsAll
bool containsAll(const GrpPeptideSet &peptideSet) const
Definition: grppeptideset.cpp:80
pappso::GrpPeptideSet::containsAny
bool containsAny(const GrpPeptideSet &peptideSet) const
Definition: grppeptideset.cpp:134
pappso::GrpPeptideSet::GrpMapPeptideToSubGroupSet
friend class GrpMapPeptideToSubGroupSet
Definition: grppeptideset.h:58
pappso::GrpPeptideSet::~GrpPeptideSet
~GrpPeptideSet()
Definition: grppeptideset.cpp:46
pappso::GrpPeptideSet::GrpPeptideSet
GrpPeptideSet()
Definition: grppeptideset.cpp:29
pappso::GrpPeptideSet::m_peptidePtrList
std::list< GrpPeptide * > m_peptidePtrList
Definition: grppeptideset.h:62
pappso::GrpPeptideSet::operator=
GrpPeptideSet & operator=(const GrpPeptideSet &other)
Definition: grppeptideset.cpp:51
pappso::GrpPeptideSet::operator==
bool operator==(const GrpPeptideSet &other) const
Definition: grppeptideset.cpp:58
pappso::GrpPeptideSet::size
unsigned int size() const
Definition: grppeptideset.h:75
grpprotein.h
pappso::GrpPeptideSet::biggerAndContainsAll
bool biggerAndContainsAll(const GrpPeptideSet &peptideSet) const
Definition: grppeptideset.cpp:90
pappso::GrpPeptideSet::printInfos
const QString printInfos() const
Definition: grppeptideset.cpp:248
pappso::GrpPeptideSet::numbering
void numbering()
Definition: grppeptideset.cpp:206