libpappsomspp
Library for mass spectrometry
pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints Class Reference

class to read retention time points of MsRun More...

#include <msrunxicextractorinterface.h>

Inheritance diagram for pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints:
pappso::SpectrumCollectionHandlerInterface

Public Member Functions

 MsRunXicExtractorReadPoints (std::vector< MsRunXicExtractorPoints > &msrun_points)
 
virtual void setQualifiedMassSpectrum (const QualifiedMassSpectrum &spectrum) override
 
virtual bool needPeakList () const override
 tells if we need the peak list (if we want the binary data) for each spectrum More...
 
virtual void loadingEnded () override
 
- Public Member Functions inherited from pappso::SpectrumCollectionHandlerInterface
virtual bool needMsLevelPeakList (unsigned int ms_level) const final
 tells if we need the peak list (if we want the binary data) for each spectrum, given an MS level More...
 
virtual void setNeedMsLevelPeakList (unsigned int ms_level, bool want_peak_list) final
 tells if we need the peak list given More...
 
virtual bool shouldStop ()
 
virtual void spectrumListHasSize (std::size_t size)
 
virtual void setReadAhead (bool is_read_ahead) final
 use threads to read a spectrum by batch of batch_size More...
 
virtual bool isReadAhead () const
 tells if we want to read ahead spectrum More...
 

Private Attributes

std::vector< MsRunXicExtractorPoints > & m_msrun_points
 

Detailed Description

class to read retention time points of MsRun

Definition at line 101 of file msrunxicextractorinterface.h.

Constructor & Destructor Documentation

◆ MsRunXicExtractorReadPoints()

pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints::MsRunXicExtractorReadPoints ( std::vector< MsRunXicExtractorPoints > &  msrun_points)
inline

Definition at line 107 of file msrunxicextractorinterface.h.

110  {

Member Function Documentation

◆ loadingEnded()

virtual void pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints::loadingEnded ( )
inlineoverridevirtual

Reimplemented from pappso::SpectrumCollectionHandlerInterface.

Definition at line 127 of file msrunxicextractorinterface.h.

◆ needPeakList()

virtual bool pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints::needPeakList ( ) const
inlineoverridevirtual

tells if we need the peak list (if we want the binary data) for each spectrum

Implements pappso::SpectrumCollectionHandlerInterface.

Definition at line 122 of file msrunxicextractorinterface.h.

◆ setQualifiedMassSpectrum()

virtual void pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints::setQualifiedMassSpectrum ( const QualifiedMassSpectrum spectrum)
inlineoverridevirtual

Member Data Documentation

◆ m_msrun_points

std::vector<MsRunXicExtractorPoints>& pappso::MsRunXicExtractorInterface::MsRunXicExtractorReadPoints::m_msrun_points
private

Definition at line 104 of file msrunxicextractorinterface.h.


The documentation for this class was generated from the following file:
pappso::MsRunReaderSPtr
std::shared_ptr< MsRunReader > MsRunReaderSPtr
Definition: msrunreader.h:172
pappso::XicExtractMethod
XicExtractMethod
Definition: types.h:221
pappso::MsRunXicExtractorInterface::m_xicExtractMethod
XicExtractMethod m_xicExtractMethod
Definition: msrunxicextractorinterface.h:142
pappso::XicExtractMethod::max
@ max
maximum of intensities
pappso::MsRunXicExtractorInterface::msp_msrun_reader
MsRunReaderSPtr msp_msrun_reader
Definition: msrunxicextractorinterface.h:141