libpappsomspp
Library for mass spectrometry
pappso::TimsData Member List

This is the complete list of members for pappso::TimsData, including all inherited members.

extractXicListByPrecursorIds(const std::vector< std::size_t > &precursor_id_list, PrecisionPtr precision_ptr, XicExtractMethod xicExtractMethod, double rtRange) constpappso::TimsDataprivate
getClosestPrecursorIdByMz(std::vector< std::vector< double >> ids, double mz_value)pappso::TimsDataprivate
getMassSpectrumCstSPtr(std::size_t timsId, std::size_t scanNum)pappso::TimsData
getMassSpectrumCstSPtrByRawIndex(std::size_t raw_index)pappso::TimsData
getMatchPrecursorIdByKo(std::vector< std::vector< double >> ids, double ko_value)pappso::TimsDataprivate
getMs2BuiltinCentroid() constpappso::TimsData
getMsLevelBySpectrumIndex(std::size_t spectrum_index)pappso::TimsData
getPrecursorsFromMzRtCharge(int charge, double mz_val, double rt_sec, double k0)pappso::TimsData
getQualifiedMassSpectrumByRawIndex(std::size_t spectrum_index, bool want_binary_data)pappso::TimsData
getQualifiedMs1MassSpectrumByPrecursorId(std::size_t ms2_index, std::size_t precursor_index, bool want_binary_data)pappso::TimsData
getQualifiedMs2MassSpectrumByPrecursorId(QualifiedMassSpectrum &mass_spectrum, std::size_t ms2_index, std::size_t precursor_index, bool want_binary_data)pappso::TimsData
getRawIndexFromCoordinate(std::size_t frame_id, std::size_t scan_num) constpappso::TimsDataprivate
getScanCoordinateFromRawIndex(std::size_t spectrum_index) constpappso::TimsDataprivate
getTimsFrameBaseCstSPtr(std::size_t timsId) constpappso::TimsDataprivate
getTimsFrameBaseCstSPtrCached(std::size_t timsId)pappso::TimsDataprivate
getTimsFrameCstSPtr(std::size_t timsId) constpappso::TimsData
getTimsFrameCstSPtrCached(std::size_t timsId)pappso::TimsDataprivate
getTimsMS1FrameIdRange(double rt_begin, double rt_end) constpappso::TimsData
getTotalNumberOfPrecursors() constpappso::TimsData
getTotalNumberOfScans() constpappso::TimsData
m_builtinMs2Centroidpappso::TimsDataprivate
m_cacheSizepappso::TimsDataprivate
m_mutexpappso::TimsDataprivate
m_timsDataDirectorypappso::TimsDataprivate
m_timsFrameBaseCachepappso::TimsDataprivate
m_timsFrameCachepappso::TimsDataprivate
m_totalNumberOfPrecursorspappso::TimsDataprivate
m_totalNumberOfScanspappso::TimsDataprivate
mcsp_ms1Filterpappso::TimsDataprivate
mcsp_ms2Filterpappso::TimsDataprivate
mpa_timsBinDecpappso::TimsDataprivate
openDatabaseConnection() constpappso::TimsDataprivate
setMs1FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)pappso::TimsData
setMs2BuiltinCentroid(bool centroid)pappso::TimsData
setMs2FilterCstSPtr(pappso::FilterInterfaceCstSPtr &filter)pappso::TimsData
TimsData(QDir timsDataDirectory)pappso::TimsData
TimsData(const TimsData &other)pappso::TimsData
~TimsData()pappso::TimsData