libpappsomspp
Library for mass spectrometry
obopsimod.h
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1 /*******************************************************************************
2  * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3  *
4  * This file is part of the PAPPSOms++ library.
5  *
6  * PAPPSOms++ is free software: you can redistribute it and/or modify
7  * it under the terms of the GNU General Public License as published by
8  * the Free Software Foundation, either version 3 of the License, or
9  * (at your option) any later version.
10  *
11  * PAPPSOms++ is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18  *
19  * Contributors:
20  * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21  *implementation
22  ******************************************************************************/
23 
24 #pragma once
25 
26 #include <QRegExp>
27 #include "../types.h"
28 #include "../exportinmportconfig.h"
29 
30 namespace pappso
31 {
32 
33 class OboPsiMod;
34 
35 class PMSPP_LIB_DECL OboPsiModTerm
36 {
37  friend OboPsiMod;
38 
39  private:
40  void parseLine(const QString &line);
41  void clearTerm();
42 
43  static QRegExp m_firstParse;
44  static QRegExp m_findExactPsiModLabel;
45  static QRegExp m_findRelatedPsiMsLabel;
46 
47  public:
48  QString m_accession;
49  QString m_name;
50  QString m_psiModLabel;
51  QString m_psiMsLabel;
52  QString m_diffFormula;
53  QString m_origin;
54 
55  pappso_double m_diffMono;
56 
57  bool
58  isValid() const
59  {
60  return (!m_accession.isEmpty());
61  };
62 };
63 
65 {
66  public:
67  virtual void setOboPsiModTerm(const OboPsiModTerm &term) = 0;
68 };
69 
71 {
72  private:
73  OboPsiModTerm m_term;
75 
76  void parse();
77 
78  public:
80  ~OboPsiMod();
81 };
82 } // namespace pappso
pappso::pappso_double
double pappso_double
A type definition for doubles.
Definition: types.h:69
pappso::OboPsiModTerm
Definition: obopsimod.h:57
PMSPP_LIB_DECL
#define PMSPP_LIB_DECL
Definition: exportinmportconfig.h:14
pappso
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
pappso::OboPsiMod
Definition: obopsimod.h:92
pappso::OboPsiModHandlerInterface::setOboPsiModTerm
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
pappso::OboPsiModHandlerInterface
Definition: obopsimod.h:86