ProteoWizard
pwiz
data
vendor_readers
Thermo
Reader_Thermo.hpp
Go to the documentation of this file.
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//
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// $Id$
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//
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//
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// Original author: Darren Kessner <darren@proteowizard.org>
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//
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// Copyright 2008 Spielberg Family Center for Applied Proteomics
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// Cedars-Sinai Medical Center, Los Angeles, California 90048
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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//
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#ifndef _READER_THERMO_HPP_
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#define _READER_THERMO_HPP_
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#include "
pwiz/utility/misc/Export.hpp
"
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#include "
pwiz/data/msdata/Reader.hpp
"
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namespace
pwiz
{
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namespace
msdata {
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class
PWIZ_API_DECL
Reader_Thermo
:
public
Reader
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{
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public
:
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virtual
std::string identify(
const
std::string& filename,
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const
std::string& head)
const
;
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virtual
void
read
(
const
std::string& filename,
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const
std::string& head,
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MSData
& result,
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int
runIndex = 0,
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const
Config
& config =
Config
())
const
;
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virtual
void
read
(
const
std::string& filename,
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const
std::string& head,
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std::vector<MSDataPtr>& results,
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const
Config
& config =
Config
())
const
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{
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results.push_back(
MSDataPtr
(
new
MSData
));
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read
(filename, head, *results.back(), 0, config);
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}
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virtual
const
char
*
getType
()
const
{
return
"Thermo RAW"
;}
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/// checks header for "Finnigan" wide char string
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static
bool
hasRAWHeader(
const
std::string& head);
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};
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}
// namespace msdata
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}
// namespace pwiz
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#endif // _READER_THERMO_HPP_
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pwiz::msdata::Reader::Config
Reader configuration.
Definition:
Reader.hpp:44
pwiz
Definition:
ChromatogramList_Filter.hpp:36
pwiz::msdata::Reader
interface for file readers
Definition:
Reader.hpp:38
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition:
Export.hpp:32
pwiz::msdata::Reader_Thermo::read
virtual void read(const std::string &filename, const std::string &head, std::vector< MSDataPtr > &results, const Config &config=Config()) const
fill in a vector of MSData structures; provides support for multi-run input files
Definition:
Reader_Thermo.hpp:48
Export.hpp
pwiz::msdata::MSDataPtr
boost::shared_ptr< MSData > MSDataPtr
Definition:
MSData.hpp:913
pwiz::msdata::Reader_Thermo::getType
virtual const char * getType() const
returns a unique string identifying the reader type
Definition:
Reader_Thermo.hpp:57
pwiz::msdata::Reader_Thermo
Definition:
Reader_Thermo.hpp:35
pwiz::msdata::MSData
This is the root element of ProteoWizard; it represents the mzML element, defined as: intended to cap...
Definition:
MSData.hpp:849
Reader.hpp
pwiz::identdata::IO::read
PWIZ_API_DECL void read(std::istream &is, CV &cv)
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