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40 if (
os_) *
os_ <<
"testTransition()\n";
51 td.
peptidePtrs.back()->proteinPtrs.back()->sequence =
"ABCD";
104 int main(
int argc,
char* argv[])
110 if (argc>1 && !strcmp(argv[1],
"-v"))
os_ = &cout;
boost::shared_ptr< Compound > CompoundPtr
Chemical compound other than a peptide for which one or more transitions.
PWIZ_API_DECL void resolve(ContactRole &cr, IdentData &mzid)
represents a peptide or polypeptide (a sequence of amino acids)
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
int main(int argc, char *argv[])
std::vector< Transition > transitions
List of transitions.
std::vector< ProteinPtr > proteinPtrs
List of proteins for which one or more transitions are intended to identify.
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
#define TEST_PROLOG_EX(argc, argv, suffix)
std::vector< CompoundPtr > compoundPtrs
boost::shared_ptr< Peptide > PeptidePtr
PeptidePtr peptidePtr
Reference to a peptide which this transition is intended to identify.
CompoundPtr compoundPtr
Reference to a compound for this transition.
std::vector< PeptidePtr > peptidePtrs
List of compounds (including peptides) for which one or more transitions are intended to identify.
boost::shared_ptr< Protein > ProteinPtr