ProteoWizard
cv.hpp
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1 //
2 // $Id$
3 //
4 //
5 // Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2007 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 // This file was generated by cvgen.
23 //
24 // Do not edit this file! Your changes will be lost next time cvgen is run -
25 // see pwiz/scripts/misc/update_cv.bat for info on how that works.
26 // Instead, edit cvgen.cpp itself, or the cv.inl include file if adding static
27 // code or data.
28 //
29 
30 
31 #ifndef _CV_HPP_
32 #define _CV_HPP_
33 
34 
35 #include <string>
36 #include <vector>
37 #include <map>
39 
40 
41 // [psi-ms.obo]
42 #define _PSI_MS_OBO_
43 // format-version: 1.2
44 // data-version: 4.1.12
45 // date: 24:07:2018 14:50
46 // saved-by: Gerhard Mayer
47 // auto-generated-by: OBO-Edit 2.3.1
48 // import: http://ontologies.berkeleybop.org/pato.obo
49 // import: http://ontologies.berkeleybop.org/uo.obo
50 // default-namespace: MS
51 // namespace-id-rule: * MS:$sequence(7,0,9999999)$
52 // namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
53 // remark: namespace: MS
54 // remark: namespace: PEFF
55 // remark: coverage: Mass spectrometer output files and spectra interpretation
56 // remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
57 // remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
58 // remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
59 // remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
60 // remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
61 // remark: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
62 // remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
63 // remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
64 // remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
65 // remark: For any queries contact psidev-ms-vocab@lists.sourceforge.net
66 // remark: URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
67 // remark: This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
68 // remark: To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
69 // ontology: ms
70 //
71 // [unimod.obo]
72 #define _UNIMOD_OBO_
73 // format-version: 1.2
74 // date: 2018:08:13 13:42
75 //
76 // [unit.obo]
77 #define _UNIT_OBO_
78 // format-version: 1.2
79 // date: 09:04:2014 13:37
80 // saved-by: gkoutos
81 // auto-generated-by: OBO-Edit 2.1-beta19
82 // subsetdef: abnormal_slim "Abnormal/normal slim"
83 // subsetdef: absent_slim "Absent/present slim"
84 // subsetdef: attribute_slim "Attribute slim"
85 // subsetdef: cell_quality "cell_quality"
86 // subsetdef: disposition_slim "Disposition slim"
87 // subsetdef: mpath_slim "Pathology slim"
88 // subsetdef: prefix_slim "prefix slim"
89 // subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist"
90 // subsetdef: scalar_slim "Scalar slim"
91 // subsetdef: unit_group_slim "unit group slim"
92 // subsetdef: unit_slim "unit slim"
93 // subsetdef: value_slim "Value slim"
94 // default-namespace: quality
95 // namespace-id-rule: * UO:$sequence(7,0,9999999)$
96 // remark: Filtered by Ancestor ID equals "UO:0000000"
97 // ontology: uo
98 // ontology: pato
99 // ontology: pato
100 // ontology: pato
101 // ontology: pato
102 // ontology: pato
103 // ontology: pato
104 //
105 
106 
107 namespace pwiz {
108 namespace cv {
109 
110 
111 /// enumeration of controlled vocabulary (CV) terms, generated from OBO file(s)
112 enum PWIZ_API_DECL CVID
113 {
115 
116  /// Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.
118 
119  /// PEFF CV term: PSI Extended FASTA Format Controlled Vocabulary term.
120  PEFF_PEFF_CV_term = 100000001,
121 
122  /// File Header Section term: CV term that may appear in a PEFF File Header Section.
124 
125  /// Individual Sequence Entries Section term: CV term that may appear in a PEFF Individual Entry Section.
127 
128  /// DbName: Sequence Database Name.
129  PEFF_DbName = 100000008,
130 
131  /// Prefix: Sequence Database Prefix.
132  PEFF_Prefix = 100000009,
133 
134  /// DbDescription: Sequence Database Short description.
135  PEFF_DbDescription = 100000010,
136 
137  /// Decoy: Specifies whether the Sequence Database is a Decoy.
138  PEFF_Decoy = 100000011,
139 
140  /// DbSource: Source of the database file.
141  PEFF_DbSource = 100000012,
142 
143  /// DbVersion: Database version (release date) according to database provider.
144  PEFF_DbVersion = 100000013,
145 
146  /// DbDate: Database date (release or file date of the source) according to database provider.
147  PEFF_DbDate_OBSOLETE = 100000014,
148 
149  /// NumberOfEntries: Number of sequence entries in the database.
150  PEFF_NumberOfEntries = 100000015,
151 
152  /// Conversion: Description of the conversion from original format to this current one.
153  PEFF_Conversion = 100000016,
154 
155  /// SequenceType: Molecular type of the sequences.
156  PEFF_SequenceType = 100000017,
157 
158  /// SpecificKey: Db specific information (not included in the current list of allowed keys).
159  PEFF_SpecificKey = 100000018,
160 
161  /// SpecificValue: PEFF specific values for a defined key.
162  PEFF_SpecificValue = 100000019,
163 
164  /// DatabaseDescription: Short Description of the PEFF.
166 
167  /// GeneralComment: PEFF file general comment.
168  PEFF_GeneralComment = 100000021,
169 
170  /// ProteoformDb: Proteoform database flag.
171  PEFF_ProteoformDb = 100000022,
172 
173  /// CustomTag: A tag (short string) used to categorize a sequence annotation (variant or modification).
174  PEFF_CustomTag = 100000023,
175 
176  /// DbUniqueId: Sequence Database unique identifier.
177  PEFF_DbUniqueId = 100001001,
178 
179  /// PName: Protein Name, description.
180  PEFF_PName = 100001002,
181 
182  /// NcbiTaxId: NCBI taxonomy identifier.
183  PEFF_NcbiTaxId = 100001003,
184 
185  /// TaxName: Taxonomy name (latin or common name).
186  PEFF_TaxName = 100001004,
187 
188  /// GName: Gene name.
189  PEFF_GName = 100001005,
190 
191  /// Length: Sequence length.
192  PEFF_Length = 100001006,
193 
194  /// SV: Sequence version.
195  PEFF_SV = 100001007,
196 
197  /// EV: Entry version.
198  PEFF_EV = 100001008,
199 
200  /// PE: Protein Evidence; A UniprotKB code.
201  PEFF_PE = 100001009,
202 
203  /// Processed: Processed Molecule.
204  PEFF_Processed = 100001010,
205 
206  /// Variant: DEPRECATED in favor of VariantSimple and VariantComplex. Former definition: Sequence variation (substitution, insertion, deletion).
207  PEFF_Variant = 100001011,
208 
209  /// ModResPsi: Modified residue with PSI-MOD identifier.
210  PEFF_ModResPsi = 100001012,
211 
212  /// ModRes: Modified residue without PSI-MOD identifier.
213  PEFF_ModRes = 100001013,
214 
215  /// AltAC: Alternative Accession Code.
216  PEFF_AltAC = 100001014,
217 
218  /// SeqStatus: Sequence Status. Complete or Fragment.
219  PEFF_SeqStatus = 100001015,
220 
221  /// CC: Entry associated comment.
222  PEFF_CC = 100001016,
223 
224  /// KW: Entry associated keyword(s).
225  PEFF_KW = 100001017,
226 
227  /// GO: Gene Ontology code.
228  PEFF_GO = 100001018,
229 
230  /// XRef: Cross-reference to an external resource.
231  PEFF_XRef = 100001019,
232 
233  /// Chain: Sequence range of active processed polypeptide.
234  PEFF_Chain = 100001020,
235 
236  /// Signal: Sequence range of signal peptide.
237  PEFF_Signal = 100001021,
238 
239  /// Transit: Sequence range of transit peptide.
240  PEFF_Transit = 100001022,
241 
242  /// Conflict: Sequence conflict; a UniProtKB term.
243  PEFF_Conflict = 100001023,
244 
245  /// Crc64: Sequence checksum in crc64.
246  PEFF_Crc64 = 100001024,
247 
248  /// Domain: Sequence range of a domain.
249  PEFF_Domain = 100001025,
250 
251  /// ID: UniProtKB specific Protein identifier ID; a UniProtKB term.
252  PEFF_ID = 100001026,
253 
254  /// ModResUnimod: Modified residue with Unimod identifier.
255  PEFF_ModResUnimod = 100001027,
256 
257  /// VariantSimple: Simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term.
258  PEFF_VariantSimple = 100001028,
259 
260  /// VariantComplex: Simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term.
261  PEFF_VariantComplex = 100001029,
262 
263  /// sample number: A reference number relevant to the sample under study.
264  MS_sample_number = 1000001,
265 
266  /// sample name: A reference string relevant to the sample under study.
267  MS_sample_name = 1000002,
268 
269  /// sample state: The chemical phase of a pure sample, or the state of a mixed sample.
270  MS_sample_state = 1000003,
271 
272  /// sample mass: Total mass of sample used.
273  MS_sample_mass = 1000004,
274 
275  /// sample volume: Total volume of solution used.
276  MS_sample_volume = 1000005,
277 
278  /// sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
280 
281  /// inlet type: The nature of the sample inlet.
282  MS_inlet_type = 1000007,
283 
284  /// ionization type: The method by which gas phase ions are generated from the sample.
286 
287  /// ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
289 
290  /// analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.
292 
293  /// mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.
295 
296  /// resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.
298 
299  /// resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.
301 
302  /// accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
303  MS_accuracy = 1000014,
304 
305  /// scan rate: Rate in Th/sec for scanning analyzers.
306  MS_scan_rate = 1000015,
307 
308  /// scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
310 
311  /// Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.
313 
314  /// scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).
315  MS_scan_direction = 1000018,
316 
317  /// scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
318  MS_scan_law = 1000019,
319 
320  /// scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.
322 
323  /// reflectron state: Status of the reflectron, turned on or off.
325 
326  /// TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.
328 
329  /// isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.
331 
332  /// final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
334 
335  /// magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
337 
338  /// B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
340 
341  /// detector type: Type of detector used in the mass spectrometer.
342  MS_detector_type = 1000026,
343 
344  /// detector acquisition mode: Method by which detector signal is acquired by the data system.
346 
347  /// detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.
349 
350  /// sampling frequency: The rate of signal sampling (measurement) with respect to time.
352 
353  /// vendor: Name of instrument vendor.
355 
356  /// instrument model: Instrument model name not including the vendor's name.
358 
359  /// customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.
360  MS_customization = 1000032,
361 
362  /// deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.
363  MS_deisotoping = 1000033,
364 
365  /// charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.
367 
368  /// peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.
369  MS_peak_picking = 1000035,
370 
371  /// scan mode: OBSOLETE.
373 
374  /// polarity: Terms to describe the polarity setting of the instrument.
376 
377  /// minute: Acquisition time in minutes.
379 
380  /// second: Acquisition time in seconds.
382 
383  /// m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
384  MS_m_z = 1000040,
385 
386  /// mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
388 
389  /// Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
391 
392  /// thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
394 
395  /// charge state: The charge state of the ion, single or multiple and positive or negatively charged.
396  MS_charge_state = 1000041,
397 
398  /// z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
400 
401  /// peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
402  MS_peak_intensity = 1000042,
403 
404  /// intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.
405  MS_intensity_unit = 1000043,
406 
407  /// dissociation method: Fragmentation method used for dissociation or fragmentation.
409 
410  /// collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.
412 
413  /// energy unit: Energy units are represented in either eV or Joules.
415 
416  /// emulsion: State if the sample is in emulsion form.
417  MS_emulsion = 1000047,
418 
419  /// gaseous sample state: State if the sample is in gaseous form.
421 
422  /// liquid sample state: State if the sample is in liquid form.
424 
425  /// solid sample state: State if the sample is in solid form.
427 
428  /// solution: State if the sample is in solution form.
429  MS_solution = 1000051,
430 
431  /// suspension: State if the sample is in suspension form.
432  MS_suspension = 1000052,
433 
434  /// sample batch: Sample batch lot identifier.
435  MS_sample_batch = 1000053,
436 
437  /// chromatography: Chromatographic conditions used to obtain the sample.
439 
440  /// continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
442 
443  /// CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
445 
446  /// direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.
447  MS_direct_inlet = 1000056,
448 
449  /// electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.
451 
452  /// flow injection analysis: Sample is directly injected or infused into the ionization source.
454 
455  /// inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.
457 
458  /// infusion: The continuous flow of solution of a sample into the ionization source.
459  MS_infusion = 1000060,
460 
461  /// jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.
462  MS_jet_separator = 1000061,
463 
464  /// membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.
466 
467  /// moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules.
468  MS_moving_belt = 1000063,
469 
470  /// moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules.
471  MS_moving_wire = 1000064,
472 
473  /// open split: A division of flowing stream of liquid into two streams.
474  MS_open_split = 1000065,
475 
476  /// particle beam: Method for generating ions from a solution of an analyte.
477  MS_particle_beam = 1000066,
478 
479  /// reservoir: A sample inlet method involving a reservoir.
480  MS_reservoir = 1000067,
481 
482  /// septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
483  MS_septum = 1000068,
484 
485  /// thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.
487 
488  /// atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
490 
491  /// APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
493 
494  /// chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
496 
497  /// CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
499 
500  /// Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
502 
503  /// EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
505 
506  /// electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
508 
509  /// ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
511 
512  /// fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
514 
515  /// FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
517 
518  /// matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
520 
521  /// MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
523 
524  /// negative ion mode: OBSOLETE.
526 
527  /// positive ion mode: OBSOLETE.
529 
530  /// axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.
532 
533  /// fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
535 
536  /// FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
538 
539  /// magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.
541 
542  /// quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
543  MS_quadrupole = 1000081,
544 
545  /// quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
547 
548  /// Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
550 
551  /// QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
553 
554  /// Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
556 
557  /// radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.
559 
560  /// time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
561  MS_time_of_flight = 1000084,
562 
563  /// TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
565 
566  /// baseline: An attribute of resolution when recording the detector response in absence of the analyte.
567  MS_baseline = 1000085,
568 
569  /// full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.
571 
572  /// FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.
574 
575  /// ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.
577 
578  /// constant: When resolution is constant with respect to m/z.
580 
581  /// proportional: When resolution is proportional with respect to m/z.
583 
584  /// mass scan: A variation of instrument where a selected mass is scanned.
586 
587  /// selected ion detection: Please see Single Ion Monitoring.
589 
590  /// decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
592 
593  /// increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
595 
596  /// exponential: The mass scan is done in exponential mode.
597  MS_exponential = 1000094,
598 
599  /// linear: The mass scan is done in linear mode.
601 
602  /// quadratic: The mass scan is done in quadratic mode.
603  MS_quadratic = 1000096,
604 
605  /// constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
607 
608  /// multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.
610 
611  /// multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
613 
614  /// MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
616 
617  /// precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
619 
620  /// product ion scan: The specific scan function or process that records product ion spectrum.
622 
623  /// single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.
625 
626  /// single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
628 
629  /// None ??: None.
631 
632  /// reflectron off: Reflectron is off.
633  MS_reflectron_off = 1000105,
634 
635  /// reflectron on: Reflectron is on.
636  MS_reflectron_on = 1000106,
637 
638  /// channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
639  MS_channeltron = 1000107,
640 
641  /// Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
643 
644  /// conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.
646 
647  /// conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.
649 
650  /// daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
651  MS_daly_detector = 1000110,
652 
653  /// Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
655 
656  /// electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
658 
659  /// EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
661 
662  /// faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.
663  MS_faraday_cup = 1000112,
664 
665  /// focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
667 
668  /// microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
670 
671  /// multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
673 
674  /// multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
676 
677  /// photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
679 
680  /// PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
682 
683  /// analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
685 
686  /// ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
688 
689  /// pulse counting: Definition to do.
690  MS_pulse_counting = 1000118,
691 
692  /// time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.
694 
695  /// TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.
697 
698  /// transient recorder: A detector acquisition mode used for detecting transient signals.
700 
701  /// SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\".
703 
704  /// Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
706 
707  /// IonSpec instrument model: IonSpec corporation instrument model.
709 
710  /// Shimadzu instrument model: Shimadzu corporation instrument model.
712 
713  /// Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
715 
716  /// Waters instrument model: Waters Corporation instrument model.
718 
719  /// centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
721 
722  /// Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
724 
725  /// profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
727 
728  /// continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
730 
731  /// Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
733 
734  /// negative scan: Polarity of the scan is negative.
735  MS_negative_scan = 1000129,
736 
737  /// positive scan: Polarity of the scan is positive.
738  MS_positive_scan = 1000130,
739 
740  /// number of detector counts: The number of counted events observed in one or a group of elements of a detector.
742 
743  /// percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.
745 
746  /// collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
748 
749  /// CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
751 
752  /// CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
754 
755  /// collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
757 
758  /// plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
760 
761  /// PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
763 
764  /// post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
766 
767  /// PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
769 
770  /// surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
772 
773  /// SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.
775 
776  /// electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
778 
779  /// normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions.
781 
782  /// 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
783  MS_4000_QTRAP = 1000139,
784 
785  /// 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
787 
788  /// apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
789  MS_apex_IV = 1000141,
790 
791  /// apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
792  MS_apex_Q = 1000142,
793 
794  /// API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
795  MS_API_150EX = 1000143,
796 
797  /// API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
798  MS_API_150EX_Prep = 1000144,
799 
800  /// API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
801  MS_API_2000 = 1000145,
802 
803  /// API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
804  MS_API_3000 = 1000146,
805 
806  /// API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
807  MS_API_4000 = 1000147,
808 
809  /// autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
810  MS_autoflex_II = 1000148,
811 
812  /// autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
814 
815  /// Auto Spec Ultima NT: Waters magnetic sector based AutoSpec Ultima NT MS.
817 
818  /// BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
819  MS_BioTOF_II = 1000151,
820 
821  /// BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
822  MS_BioTOF_Q = 1000152,
823 
824  /// DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
826 
827  /// DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
828  MS_DELTAplusXP = 1000154,
829 
830  /// ELEMENT2: ThermoFinnigan ELEMENT2 MS.
832 
833  /// esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
834  MS_esquire_4000 = 1000156,
835 
836  /// esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
837  MS_esquire_6000 = 1000157,
838 
839  /// explorer: IonSpec Explorer MS.
840  MS_explorer = 1000158,
841 
842  /// GCT: Waters oa-ToF based GCT.
843  MS_GCT = 1000159,
844 
845  /// HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
846  MS_HCT = 1000160,
847 
848  /// HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
849  MS_HCTplus = 1000161,
850 
851  /// HiRes ESI: IonSpec HiResESI MS.
852  MS_HiRes_ESI = 1000162,
853 
854  /// HiRes MALDI: IonSpec HiResMALDI MS.
855  MS_HiRes_MALDI = 1000163,
856 
857  /// IsoPrime: Waters IsoPrime MS.
858  MS_IsoPrime = 1000164,
859 
860  /// IsoProbe: Waters IsoProbe MS.
861  MS_IsoProbe = 1000165,
862 
863  /// IsoProbe T: Waters IsoProbe T MS.
864  MS_IsoProbe_T = 1000166,
865 
866  /// LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
867  MS_LCQ_Advantage = 1000167,
868 
869  /// LCQ Classic: ThermoFinnigan LCQ Classic MS.
870  MS_LCQ_Classic = 1000168,
871 
872  /// LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
874 
875  /// M@LDI L: Waters oa-ToF based MALDI L.
876  MS_M_LDI_L = 1000170,
877 
878  /// M@LDI LR: Waters oa-ToF based MALDI LR.
879  MS_M_LDI_LR = 1000171,
880 
881  /// MAT253: ThermoFinnigan MAT253 MS.
882  MS_MAT253 = 1000172,
883 
884  /// MAT900XP: ThermoFinnigan MAT900XP MS.
885  MS_MAT900XP = 1000173,
886 
887  /// MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
888  MS_MAT900XP_Trap = 1000174,
889 
890  /// MAT95XP: ThermoFinnigan MAT95XP MS.
891  MS_MAT95XP = 1000175,
892 
893  /// MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
894  MS_MAT95XP_Trap = 1000176,
895 
896  /// microflex: Bruker Daltonics' microflex: MALDI TOF.
897  MS_microflex = 1000177,
898 
899  /// microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
900  MS_microTOF_LC = 1000178,
901 
902  /// neptune: ThermoFinnigan NEPTUNE MS.
903  MS_neptune = 1000179,
904 
905  /// NG-5400: Waters NG-5400 MS.
906  MS_NG_5400 = 1000180,
907 
908  /// OMEGA: IonSpec OMEGA MS.
909  MS_OMEGA = 1000181,
910 
911  /// OMEGA-2001: IonSpec OMEGA-2001 MS.
912  MS_OMEGA_2001 = 1000182,
913 
914  /// OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
915  MS_OmniFlex = 1000183,
916 
917  /// Platform ICP: Waters Platform ICP MS.
918  MS_Platform_ICP = 1000184,
919 
920  /// PolarisQ: ThermoFinnigan PolarisQ MS.
921  MS_PolarisQ = 1000185,
922 
923  /// proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
925 
926  /// Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
927  MS_Q_TRAP = 1000187,
928 
929  /// Q-Tof micro: Waters oa-ToF based Q-Tof micro.
930  MS_Q_Tof_micro = 1000188,
931 
932  /// Q-Tof Ultima: Waters oa-ToF based Q-Tof Ultima.
933  MS_Q_Tof_Ultima = 1000189,
934 
935  /// QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
936  MS_QSTAR = 1000190,
937 
938  /// quattro micro: Waters (triple) quadrupole based micro.
939  MS_quattro_micro = 1000191,
940 
941  /// Quattro Ultima: Waters (triple) quadrupole based Ultima.
942  MS_Quattro_Ultima = 1000192,
943 
944  /// Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
945  MS_Surveyor_MSQ = 1000193,
946 
947  /// SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
948  MS_SymBiot_I = 1000194,
949 
950  /// SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
951  MS_SymBiot_XVI = 1000195,
952 
953  /// TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
954  MS_TEMPUS_TOF = 1000196,
955 
956  /// TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
957  MS_TRACE_DSQ = 1000197,
958 
959  /// TRITON: ThermoFinnigan TRITON MS.
960  MS_TRITON = 1000198,
961 
962  /// TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
963  MS_TSQ_Quantum = 1000199,
964 
965  /// ultima: IonSpec Ultima MS.
966  MS_ultima = 1000200,
967 
968  /// ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
969  MS_ultraflex = 1000201,
970 
971  /// ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
973 
974  /// Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
975  MS_Voyager_DE_PRO = 1000203,
976 
977  /// Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
978  MS_Voyager_DE_STR = 1000204,
979 
980  /// selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
982 
983  /// Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
985 
986  /// SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
988 
989  /// selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
991 
992  /// SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
994 
995  /// accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.
997 
998  /// average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.
1000 
1001  /// appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
1003 
1004  /// AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
1006 
1007  /// base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
1008  MS_base_peak = 1000210,
1009 
1010  /// BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
1012 
1013  /// OBSOLETE charge number: The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
1015 
1016  /// dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
1018 
1019  /// electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
1021 
1022  /// EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
1024 
1025  /// electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.
1027 
1028  /// exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
1030 
1031  /// field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.
1033 
1034  /// FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.
1036 
1037  /// ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.
1039 
1040  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1042 
1043  /// ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
1045 
1046  /// IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
1048 
1049  /// isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
1051 
1052  /// IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
1054 
1055  /// magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.
1057 
1058  /// mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
1060 
1061  /// mass number: The sum of the protons and neutrons in an atom, molecule or ion.
1063 
1064  /// molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
1066 
1067  /// monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.
1069 
1070  /// molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
1072 
1073  /// MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
1075 
1076  /// multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.
1078 
1079  /// MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.
1081 
1082  /// nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.
1084 
1085  /// nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.
1087 
1088  /// odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.
1090 
1091  /// peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
1092  MS_peak = 1000231,
1093 
1094  /// peak intensity: The height or area of a peak in a mass spectrum.
1096 
1097  /// proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
1099 
1100  /// PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
1102 
1103  /// mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.
1105 
1106  /// total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
1108 
1109  /// TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
1111 
1112  /// transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.
1113  MS_transmission = 1000236,
1114 
1115  /// unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
1117 
1118  /// u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
1120 
1121  /// accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
1123 
1124  /// AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
1126 
1127  /// atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
1129 
1130  /// AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
1132 
1133  /// atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
1135 
1136  /// API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
1138 
1139  /// Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1141 
1142  /// APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1144 
1145  /// blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
1147 
1148  /// BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
1150 
1151  /// charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1153 
1154  /// CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1156 
1157  /// consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1159 
1160  /// CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1162 
1163  /// charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1165 
1166  /// CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1168 
1169  /// delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1171 
1172  /// DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1174 
1175  /// desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1177 
1178  /// DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1180 
1181  /// direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1183 
1184  /// DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1186 
1187  /// direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1189 
1190  /// DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1192 
1193  /// electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1195 
1196  /// ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1198 
1199  /// even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1201 
1202  /// EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1204 
1205  /// electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1207 
1208  /// EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1210 
1211  /// electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1213 
1214  /// EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1216 
1217  /// electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1219 
1220  /// ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1222 
1223  /// flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1225 
1226  /// FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1228 
1229  /// high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1231 
1232  /// FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1234 
1235  /// field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1237 
1238  /// FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1240 
1241  /// field ionization: The removal of electrons from any species by interaction with a high electric field.
1243 
1244  /// FI (field ionization): The removal of electrons from any species by interaction with a high electric field.
1246 
1247  /// glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1249 
1250  /// GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1252 
1253  /// ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1255 
1256  /// IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1258 
1259  /// ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1261 
1262  /// IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1264 
1265  /// infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1267 
1268  /// IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1270 
1271  /// isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1273 
1274  /// IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1276 
1277  /// ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.
1278  MS_ion_trap = 1000264,
1279 
1280  /// IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.
1282 
1283  /// kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1285 
1286  /// KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1288 
1289  /// Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1291 
1292  /// Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1294 
1295  /// LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1297 
1298  /// mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1300 
1301  /// MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1303 
1304  /// mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1306 
1307  /// MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1309 
1310  /// mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1312 
1313  /// MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1315 
1316  /// multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1318 
1319  /// MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1321 
1322  /// Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
1324 
1325  /// NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.
1327 
1328  /// neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1330 
1331  /// NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1333 
1334  /// photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1336 
1337  /// PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1339 
1340  /// pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1342 
1343  /// PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1345 
1346  /// collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1348 
1349  /// q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1351 
1352  /// resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1354 
1355  /// REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1357 
1358  /// residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1360 
1361  /// RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1363 
1364  /// surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1366 
1367  /// SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1369 
1370  /// surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1372 
1373  /// SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1375 
1376  /// suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1378 
1379  /// SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1381 
1382  /// selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1384 
1385  /// SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1387 
1388  /// sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1390 
1391  /// SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1393 
1394  /// Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
1396 
1397  /// SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
1399 
1400  /// stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1402 
1403  /// SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1405 
1406  /// total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1408 
1409  /// TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1411 
1412  /// time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1414 
1415  /// TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1417 
1418  /// time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1420 
1421  /// TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1423 
1424  /// cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.
1425  MS_cyclotron = 1000288,
1426 
1427  /// double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.
1429 
1430  /// hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.
1432 
1433  /// linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.
1435 
1436  /// mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.
1438 
1439  /// mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.
1441 
1442  /// mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).
1443  MS_mass_spectrum = 1000294,
1444 
1445  /// mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.
1447 
1448  /// nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.
1450 
1451  /// paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.
1453 
1454  /// prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.
1456 
1457  /// quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.
1459 
1460  /// reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.
1461  MS_reflectron = 1000300,
1462 
1463  /// sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.
1465 
1466  /// tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
1468 
1469  /// transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
1471 
1472  /// accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
1474 
1475  /// cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.
1477 
1478  /// dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.
1480 
1481  /// einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.
1482  MS_einzel_lens = 1000307,
1483 
1484  /// electric field strength: The magnitude of the force per unit charge at a given point in space.
1486 
1487  /// first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
1489 
1490  /// fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
1492 
1493  /// kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.
1495 
1496  /// mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
1498 
1499  /// scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
1501 
1502  /// mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.
1504 
1505  /// mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.
1507 
1508  /// mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.
1510 
1511  /// orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.
1513 
1514  /// resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.
1516 
1517  /// space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.
1519 
1520  /// static field: An electric or magnetic field that does not change in time.
1521  MS_static_field = 1000320,
1522 
1523  /// 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.
1525 
1526  /// charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.
1528 
1529  /// constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
1531 
1532  /// constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
1534 
1535  /// Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.
1537 
1538  /// constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1540 
1541  /// constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1543 
1544  /// constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1546 
1547  /// constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1549 
1550  /// consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1552 
1553  /// e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.
1555 
1556  /// linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.
1558 
1559  /// linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.
1561 
1562  /// Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.
1564 
1565  /// Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.
1567 
1568  /// Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.
1570 
1571  /// MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.
1573 
1574  /// MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.
1576 
1577  /// neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type).
1578  MS_neutral_loss = 1000336,
1579 
1580  /// nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.
1582 
1583  /// nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.
1585 
1586  /// nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.
1588 
1589  /// precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated.
1591 
1592  /// precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.
1594 
1595  /// product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.
1597 
1598  /// product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.
1600 
1601  /// progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1603 
1604  /// Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1606 
1607  /// array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.
1609 
1610  /// conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.
1612 
1613  /// dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.
1614  MS_dynode = 1000347,
1615 
1616  /// focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
1618 
1619  /// ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.
1621 
1622  /// point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.
1624 
1625  /// postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.
1627 
1628  /// secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.
1630 
1631  /// adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.
1632  MS_adduct_ion = 1000353,
1633 
1634  /// aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.
1636 
1637  /// analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.
1639 
1640  /// anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
1642 
1643  /// cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
1645 
1646  /// cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.
1648 
1649  /// Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.
1651 
1652  /// diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.
1654 
1655  /// dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.
1657 
1658  /// distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.
1660 
1661  /// enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.
1663 
1664  /// fragment ion: A product ion that results from the dissociation of a precursor ion.
1666 
1667  /// ion?: An atomic or molecular species having a net positive or negative electric charge.
1668  MS_ion__OBSOLETE = 1000365,
1669 
1670  /// Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.
1672 
1673  /// Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.
1675 
1676  /// metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.
1678 
1679  /// molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.
1681 
1682  /// negative ion: An atomic or molecular species having a net negative electric charge.
1684 
1685  /// non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.
1687 
1688  /// onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.
1690 
1691  /// principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.
1693 
1694  /// positive ion: An atomic or molecular species having a net positive electric charge.
1696 
1697  /// protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.
1699 
1700  /// radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.
1702 
1703  /// reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.
1705 
1706  /// stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.
1708 
1709  /// unstable ion: An ion with sufficient energy to dissociate within the ion source.
1711 
1712  /// adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.
1714 
1715  /// associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.
1717 
1718  /// atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1720 
1721  /// autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.
1723 
1724  /// autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.
1726 
1727  /// charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.
1729 
1730  /// chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.
1732 
1733  /// desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.
1735 
1736  /// dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.
1738 
1739  /// electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
1741 
1742  /// ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.
1744 
1745  /// ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.
1747 
1748  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1750 
1751  /// laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.
1753 
1754  /// liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.
1756 
1757  /// membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.
1759 
1760  /// microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray.
1762 
1763  /// nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1765 
1766  /// nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1768 
1769  /// penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.
1771 
1772  /// plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
1774 
1775  /// pre-ionization state: An electronic state capable of undergoing auto-Ionization.
1777 
1778  /// secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.
1780 
1781  /// soft ionization: The formation of gas-phase ions without extensive fragmentation.
1783 
1784  /// spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.
1786 
1787  /// surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.
1789 
1790  /// surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1792 
1793  /// thermal ionization: The ionization of a neutral species through contact with a high temperature surface.
1795 
1796  /// vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.
1798 
1799  /// association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.
1801 
1802  /// alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.
1804 
1805  /// beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.
1807 
1808  /// buffer gas: An inert gas used for collisional deactivation of internally excited ions.
1809  MS_buffer_gas = 1000412,
1810 
1811  /// charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.
1813 
1814  /// charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.
1816 
1817  /// charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.
1819 
1820  /// charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.
1822 
1823  /// charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.
1825 
1826  /// collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.
1828 
1829  /// collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
1830  MS_collision_gas = 1000419,
1831 
1832  /// heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.
1834 
1835  /// high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.
1837 
1838  /// beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell.
1840 
1841  /// HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell.
1843 
1844  /// homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.
1846 
1847  /// hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.
1849 
1850  /// ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.
1852 
1853  /// ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.
1855 
1856  /// ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.
1858 
1859  /// ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.
1861 
1862  /// ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.
1864 
1865  /// ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.
1867 
1868  /// kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.
1870 
1871  /// low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.
1873 
1874  /// low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.
1876 
1877  /// McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.
1879 
1880  /// photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1882 
1883  /// multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1885 
1886  /// MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1888 
1889  /// partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.
1891 
1892  /// ion reaction: Chemical transformation involving an ion.
1894 
1895  /// superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.
1897 
1898  /// surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.
1900 
1901  /// unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.
1903 
1904  /// scan: Function or process of the mass spectrometer where it records a spectrum.
1905  MS_scan = 1000441,
1906 
1907  /// spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.
1908  MS_spectrum = 1000442,
1909 
1910  /// mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
1912 
1913  /// m/z Separation Method: Mass/charge separation Method.
1915 
1916  /// sequential m/z separation method: Sequential m/z separation method.
1918 
1919  /// fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1921 
1922  /// FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1924 
1925  /// LTQ: Finnigan LTQ MS.
1926  MS_LTQ = 1000447,
1927 
1928  /// LTQ FT: Finnigan LTQ FT MS.
1929  MS_LTQ_FT = 1000448,
1930 
1931  /// LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
1932  MS_LTQ_Orbitrap = 1000449,
1933 
1934  /// LXQ: Finnigan LXQ MS.
1935  MS_LXQ = 1000450,
1936 
1937  /// mass analyzer: Terms used to describe the Analyzer.
1938  MS_mass_analyzer = 1000451,
1939 
1940  /// analyzer (mass analyzer): Terms used to describe the Analyzer.
1942 
1943  /// data transformation: Terms used to describe types of data processing.
1945 
1946  /// data processing (data transformation): Terms used to describe types of data processing.
1948 
1949  /// detector: The device that detects ions.
1950  MS_detector = 1000453,
1951 
1952  /// instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.
1954 
1955  /// ion selection attribute: Ion selection properties that are associated with a value.
1957 
1958  /// precursor activation: Terms to describe the precursor activation.
1960 
1961  /// activation (precursor activation): Terms to describe the precursor activation.
1963 
1964  /// sample: Terms to describe the sample.
1965  MS_sample = 1000457,
1966 
1967  /// source: Terms to describe the source.
1968  MS_source = 1000458,
1969 
1970  /// spectrum instrument description: Terms used to describe the spectrum.
1972 
1973  /// unit: Terms to describe units.
1974  MS_unit_OBSOLETE = 1000460,
1975 
1976  /// additional description: Terms to describe Additional.
1978 
1979  /// ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.
1980  MS_ion_optics = 1000462,
1981 
1982  /// instrument: Description of the instrument or the mass spectrometer.
1983  MS_instrument = 1000463,
1984 
1985  /// instrument configuration (instrument): Description of the instrument or the mass spectrometer.
1987 
1988  /// mass unit: A unit of measurement for mass.
1990 
1991  /// scan polarity: Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer.
1992  MS_scan_polarity = 1000465,
1993 
1994  /// alternating: Alternating.
1996 
1997  /// 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2.
1999 
2000  /// 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.
2002 
2003  /// 6120A Quadrupole LC/MS: The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.
2005 
2006  /// 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
2008 
2009  /// 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
2011 
2012  /// 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2014 
2015  /// 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.
2017 
2018  /// 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2020 
2021  /// 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2023 
2024  /// 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
2026 
2027  /// 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
2029 
2030  /// 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
2032 
2033  /// 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.
2035 
2036  /// purgatory: Terms that will likely become obsolete unless there are wails of dissent.
2038 
2039  /// mass analyzer attribute: Analyzer properties that are associated with a value.
2041 
2042  /// detector attribute: Detector attribute recognized as a value.
2044 
2045  /// source attribute: Property of a source device that need a value.
2047 
2048  /// Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
2050 
2051  /// orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.
2052  MS_orbitrap = 1000484,
2053 
2054  /// nanospray inlet: Nanospray Inlet.
2056 
2057  /// source potential: Potential difference at the MS source in volts.
2059 
2060  /// ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.
2062 
2063  /// Hitachi instrument model: Hitachi instrument model.
2065 
2066  /// Varian instrument model: Varian instrument model.
2068 
2069  /// Agilent instrument model: Agilent instrument model.
2071 
2072  /// Dionex instrument model: Dionex instrument model.
2074 
2075  /// Thermo Electron instrument model: Thermo Electron Corporation instrument model.
2077 
2078  /// Finnigan MAT instrument model: Finnigan MAT instrument model.
2080 
2081  /// Thermo Scientific instrument model: Thermo Scientific instrument model.
2083 
2084  /// Applied Biosystems instrument model: Applied Biosystems instrument model.
2086 
2087  /// ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
2089 
2090  /// instrument attribute: Instrument properties that are associated with a value.
2092 
2093  /// zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
2094  MS_zoom_scan = 1000497,
2095 
2096  /// enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
2098 
2099  /// full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
2101 
2102  /// spectrum attribute: Spectrum properties that are associated with a value.
2104 
2105  /// scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
2107 
2108  /// scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
2110 
2111  /// dwell time: The time spent gathering data across a peak.
2112  MS_dwell_time = 1000502,
2113 
2114  /// scan attribute: Scan properties that are associated with a value.
2116 
2117  /// base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
2118  MS_base_peak_m_z = 1000504,
2119 
2120  /// base peak intensity: The intensity of the greatest peak in the mass spectrum.
2122 
2123  /// ion role: Ion Role.
2125 
2126  /// ion attribute: Ion properties that are associated with a value.
2128 
2129  /// ion chemical type: Ion Type.
2131 
2132  /// activation energy: Activation Energy.
2134 
2135  /// precursor activation attribute: Precursor Activation Attribute.
2137 
2138  /// ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
2139  MS_ms_level = 1000511,
2140 
2141  /// filter string: A string unique to Thermo instrument describing instrument settings for the scan.
2142  MS_filter_string = 1000512,
2143 
2144  /// binary data array: A data array of values.
2146 
2147  /// m/z array: A data array of m/z values.
2148  MS_m_z_array = 1000514,
2149 
2150  /// intensity array: A data array of intensity values.
2152 
2153  /// charge array: A data array of charge values.
2154  MS_charge_array = 1000516,
2155 
2156  /// signal to noise array: A data array of signal-to-noise values.
2158 
2159  /// binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.
2161 
2162  /// 32-bit integer: Signed 32-bit little-endian integer.
2164 
2165  /// 16-bit float: Signed 16-bit float.
2167 
2168  /// 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
2169  MS_32_bit_float = 1000521,
2170 
2171  /// 64-bit integer: Signed 64-bit little-endian integer.
2173 
2174  /// 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
2175  MS_64_bit_float = 1000523,
2176 
2177  /// data file content: Describes the data content on the file.
2179 
2180  /// spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.
2182 
2183  /// Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition.
2185 
2186  /// highest observed m/z: Highest m/z value observed in the m/z array.
2188 
2189  /// lowest observed m/z: Lowest m/z value observed in the m/z array.
2191 
2192  /// instrument serial number: Serial Number of the instrument.
2194 
2195  /// file format conversion: Conversion of one file format to another.
2197 
2198  /// software: Software related to the recording or transformation of spectra.
2199  MS_software = 1000531,
2200 
2201  /// Xcalibur: Thermo Finnigan software for data acquisition and analysis.
2202  MS_Xcalibur = 1000532,
2203 
2204  /// Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
2205  MS_Bioworks = 1000533,
2206 
2207  /// MassLynx: Micromass software for data acquisition and analysis.
2208  MS_MassLynx = 1000534,
2209 
2210  /// FlexAnalysis: Bruker software for data analysis.
2211  MS_FlexAnalysis = 1000535,
2212 
2213  /// Data Explorer: Applied Biosystems software for data acquisition and analysis.
2214  MS_Data_Explorer = 1000536,
2215 
2216  /// 4700 Explorer: Applied Biosystems software for data acquisition and analysis.
2217  MS_4700_Explorer = 1000537,
2218 
2219  /// massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2220  MS_massWolf = 1000538,
2221 
2222  /// wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2224 
2225  /// Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.
2227 
2228  /// FlexControl: Bruker software for data acquisition.
2229  MS_FlexControl = 1000540,
2230 
2231  /// ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\".
2232  MS_ReAdW = 1000541,
2233 
2234  /// MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.
2235  MS_MzStar = 1000542,
2236 
2237  /// data processing action: Data processing attribute used to describe the type of data processing performed on the data file.
2239 
2240  /// Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
2242 
2243  /// Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
2245 
2246  /// Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2248 
2249  /// object attribute: Object Attribute.
2251 
2252  /// sample attribute: Sample properties that are associated with a value.
2254 
2255  /// selection window attribute: Selection window properties that are associated with a value.
2257 
2258  /// time unit: Time Unit.
2260 
2261  /// Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
2262  MS_Analyst = 1000551,
2263 
2264  /// maldi spot identifier: Maldi Spot Identifier.
2266 
2267  /// Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
2268  MS_Trapper = 1000553,
2269 
2270  /// LCQ Deca: ThermoFinnigan LCQ Deca.
2271  MS_LCQ_Deca = 1000554,
2272 
2273  /// LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
2275 
2276  /// LTQ Orbitrap XL: LTQ Orbitrap XL.
2278 
2279  /// LTQ FT Ultra: LTQ FT Ultra.
2280  MS_LTQ_FT_Ultra = 1000557,
2281 
2282  /// GC Quantum: GC Quantum.
2283  MS_GC_Quantum = 1000558,
2284 
2285  /// spectrum type: Spectrum type.
2286  MS_spectrum_type = 1000559,
2287 
2288  /// mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
2290 
2291  /// data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.
2293 
2294  /// ABI WIFF format: Applied Biosystems WIFF file format.
2296 
2297  /// Thermo RAW format: Thermo Scientific RAW file format.
2299 
2300  /// PSI mzData format: Proteomics Standards Inititative mzData file format.
2302 
2303  /// Micromass PKL format: Micromass PKL file format.
2305 
2306  /// ISB mzXML format: Institute of Systems Biology mzXML file format.
2308 
2309  /// Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
2311 
2312  /// MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.
2313  MS_MD5 = 1000568,
2314 
2315  /// SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.
2316  MS_SHA_1 = 1000569,
2317 
2318  /// spectra combination: Method used to combine the mass spectra.
2320 
2321  /// sum of spectra: Spectra Sum.
2323 
2324  /// binary data compression type: Compression Type.
2326 
2327  /// median of spectra: Spectra is combined by calculating the median of the spectra.
2329 
2330  /// zlib compression: Zlib.
2332 
2333  /// mean of spectra: Spectra is combined by calculating the mean of the spectra.
2335 
2336  /// no compression: No Compression.
2338 
2339  /// raw data file: Describes the type of file and its content.
2340  MS_raw_data_file = 1000577,
2341 
2342  /// source file (raw data file): Describes the type of file and its content.
2344 
2345  /// LCQ Fleet: LCQ Fleet.
2346  MS_LCQ_Fleet = 1000578,
2347 
2348  /// MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2349  MS_MS1_spectrum = 1000579,
2350 
2351  /// full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2353 
2354  /// Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2356 
2357  /// Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2359 
2360  /// Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2362 
2363  /// MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2364  MS_MSn_spectrum = 1000580,
2365 
2366  /// multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2368 
2369  /// nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2371 
2372  /// product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2374 
2375  /// CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
2376  MS_CRM_spectrum = 1000581,
2377 
2378  /// SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2379  MS_SIM_spectrum = 1000582,
2380 
2381  /// MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2383 
2384  /// multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2386 
2387  /// selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2389 
2390  /// SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2391  MS_SRM_spectrum = 1000583,
2392 
2393  /// MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2395 
2396  /// multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2398 
2399  /// selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2401 
2402  /// mzML format: Proteomics Standards Inititative mzML file format.
2403  MS_mzML_format = 1000584,
2404 
2405  /// contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.
2407 
2408  /// contact name: Name of the contact person or organization.
2409  MS_contact_name = 1000586,
2410 
2411  /// contact address: Postal address of the contact person or organization.
2413 
2414  /// contact URL: Uniform Resource Locator related to the contact person or organization.
2415  MS_contact_URL = 1000588,
2416 
2417  /// contact email: Email address of the contact person or organization.
2418  MS_contact_email = 1000589,
2419 
2420  /// contact affiliation: Home institution of the contact person.
2422 
2423  /// MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.
2424  MS_MzWiff = 1000591,
2425 
2426  /// smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.
2427  MS_smoothing = 1000592,
2428 
2429  /// baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.
2431 
2432  /// low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2434 
2435  /// thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2437 
2438  /// time array: A data array of relative time offset values from a reference time.
2439  MS_time_array = 1000595,
2440 
2441  /// measurement method: An attribute of resolution when recording the detector response in absence of the analyte.
2443 
2444  /// ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
2446 
2447  /// electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2449 
2450  /// ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2452 
2453  /// pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2455 
2456  /// PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2458 
2459  /// Proteios: Database application and analysis platform for proteomics.
2460  MS_Proteios = 1000600,
2461 
2462  /// ProteinLynx Global Server: Waters software for data analysis.
2464 
2465  /// Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
2467 
2468  /// Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
2470 
2471  /// LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
2472  MS_LCMS_IT_TOF = 1000604,
2473 
2474  /// LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
2475  MS_LCMS_2010EV = 1000605,
2476 
2477  /// LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
2478  MS_LCMS_2010A = 1000606,
2479 
2480  /// AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
2482 
2483  /// AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
2484  MS_AXIMA_QIT = 1000608,
2485 
2486  /// AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
2488 
2489  /// AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
2491 
2492  /// AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
2494 
2495  /// AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
2497 
2498  /// DTA format: SEQUEST DTA file format.
2499  MS_DTA_format = 1000613,
2500 
2501  /// ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server.
2503 
2504  /// ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2506 
2507  /// pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2509 
2510  /// preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.
2512 
2513  /// wavelength array: A data array of electromagnetic radiation wavelength values.
2515 
2516  /// highest observed wavelength: Highest wavelength observed in an EMR spectrum.
2518 
2519  /// lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
2521 
2522  /// PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
2524 
2525  /// photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light.
2527 
2528  /// PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light.
2530 
2531  /// Surveyor PDA: Surveyor PDA.
2532  MS_Surveyor_PDA = 1000622,
2533 
2534  /// Accela PDA: Accela PDA.
2535  MS_Accela_PDA = 1000623,
2536 
2537  /// inductive detector: Inductive detector.
2539 
2540  /// image current detector (inductive detector): Inductive detector.
2542 
2543  /// chromatogram: The representation of detector response versus time.
2544  MS_chromatogram = 1000625,
2545 
2546  /// chromatogram type: Broad category or type of a chromatogram.
2548 
2549  /// selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2551 
2552  /// SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2554 
2555  /// basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.
2557 
2558  /// low intensity threshold: Threshold below which some action is taken.
2560 
2561  /// data processing parameter: Data processing parameter used in the data processing performed on the data file.
2563 
2564  /// high intensity threshold: Threshold above which some action is taken.
2566 
2567  /// Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
2568  MS_Q_Tof_Premier = 1000632,
2569 
2570  /// possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.
2572 
2573  /// DSQ: ThermoFinnigan DSQ GC-MS.
2574  MS_DSQ = 1000634,
2575 
2576  /// ITQ 700: Thermo Scientific ITQ 700 GC-MS.
2577  MS_ITQ_700 = 1000635,
2578 
2579  /// ITQ 900: Thermo Scientific ITQ 900 GC-MS.
2580  MS_ITQ_900 = 1000636,
2581 
2582  /// ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
2583  MS_ITQ_1100 = 1000637,
2584 
2585  /// LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
2586  MS_LTQ_XL_ETD = 1000638,
2587 
2588  /// LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
2590 
2591  /// DFS: Thermo Scientific DFS HR GC-MS.
2592  MS_DFS = 1000640,
2593 
2594  /// DSQ II: Thermo Scientific DSQ II GC-MS.
2595  MS_DSQ_II = 1000641,
2596 
2597  /// MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
2598  MS_MALDI_LTQ_XL = 1000642,
2599 
2600  /// MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
2602 
2603  /// TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
2605 
2606  /// Element XR: Thermo Scientific Element XR HR-ICP-MS.
2607  MS_Element_XR = 1000645,
2608 
2609  /// Element 2: Thermo Scientific Element 2 HR-ICP-MS.
2610  MS_Element_2 = 1000646,
2611 
2612  /// Element GD: Thermo Scientific Element GD Glow Discharge MS.
2613  MS_Element_GD = 1000647,
2614 
2615  /// GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
2616  MS_GC_IsoLink = 1000648,
2617 
2618  /// Exactive: Thermo Scientific Exactive MS.
2619  MS_Exactive = 1000649,
2620 
2621  /// Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
2623 
2624  /// 3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
2625  MS_3200_QTRAP = 1000651,
2626 
2627  /// 4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
2629 
2630  /// API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
2631  MS_API_3200 = 1000653,
2632 
2633  /// API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
2634  MS_API_5000 = 1000654,
2635 
2636  /// QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
2637  MS_QSTAR_Elite = 1000655,
2638 
2639  /// QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
2640  MS_QSTAR_Pulsar = 1000656,
2641 
2642  /// QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
2643  MS_QSTAR_XL = 1000657,
2644 
2645  /// 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
2647 
2648  /// 4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2650 
2651  /// GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
2652  MS_GPS_Explorer = 1000661,
2653 
2654  /// LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
2656 
2657  /// ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
2659 
2660  /// TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
2662 
2663  /// MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
2665 
2666  /// MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
2668 
2669  /// BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
2670  MS_BioAnalyst = 1000667,
2671 
2672  /// Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
2673  MS_Pro_ID = 1000668,
2674 
2675  /// Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
2676  MS_Pro_ICAT = 1000669,
2677 
2678  /// Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
2679  MS_Pro_Quant = 1000670,
2680 
2681  /// Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
2682  MS_Pro_BLAST = 1000671,
2683 
2684  /// Cliquid: SCIEX Cliquid software for data analysis and quantitation.
2685  MS_Cliquid = 1000672,
2686 
2687  /// MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
2689 
2690  /// MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
2691  MS_MultiQuant = 1000674,
2692 
2693  /// 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2695 
2696  /// 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2698 
2699  /// 6520A Quadrupole Time-of-Flight LC/MS: The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2701 
2702  /// MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
2704 
2705  /// MassHunter Easy Access: Software for open access data acquisition.
2707 
2708  /// MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
2710 
2711  /// MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data.
2713 
2714  /// MassHunter Metabolite ID: Software for identification of metabolites.
2716 
2717  /// MassHunter BioConfirm: Software for protein characterization.
2719 
2720  /// Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2721  MS_Genespring_MS = 1000684,
2722 
2723  /// MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2725 
2726  /// METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.
2727  MS_METLIN = 1000686,
2728 
2729  /// Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.
2731 
2732  /// 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.
2734 
2735  /// Agilent software: Agilent software for data acquisition and analysis.
2737 
2738  /// SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2740 
2741  /// Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
2743 
2744  /// Bruker software: Bruker software for data acquisition and analysis.
2746 
2747  /// Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
2749 
2750  /// Waters software: Waters software for data acquisition and analysis.
2752 
2753  /// apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
2754  MS_apex_ultra = 1000695,
2755 
2756  /// autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
2758 
2759  /// Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
2761 
2762  /// HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
2763  MS_HCTultra = 1000698,
2764 
2765  /// HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
2766  MS_HCTultra_PTM = 1000699,
2767 
2768  /// HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
2770 
2771  /// microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
2772  MS_microflex_LT = 1000701,
2773 
2774  /// micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
2775  MS_micrOTOF = 1000702,
2776 
2777  /// micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
2778  MS_micrOTOF_Q = 1000703,
2779 
2780  /// micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
2781  MS_micrOTOF_Q_II = 1000704,
2782 
2783  /// ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
2785 
2786  /// apexControl: Bruker software for data acquisition.
2787  MS_apexControl = 1000706,
2788 
2789  /// BioTools: Bruker software for data analysis.
2790  MS_BioTools = 1000707,
2791 
2792  /// CLINPROT: Bruker CLINPROT software.
2793  MS_CLINPROT = 1000708,
2794 
2795  /// CLINPROT micro: Bruker CLINPROT micro software.
2797 
2798  /// CLINPROT robot: Bruker CLINPROT robot software.
2800 
2801  /// ClinProTools: Bruker ClinProTools software.
2802  MS_ClinProTools = 1000711,
2803 
2804  /// Compass: Bruker Compass software.
2805  MS_Compass = 1000712,
2806 
2807  /// Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
2809 
2810  /// Compass for micrOTOF: Bruker Compass for micrOTOF software.
2812 
2813  /// Compass OpenAccess: Bruker compass OpenAccess software.
2815 
2816  /// Compass Security Pack: Bruker compass Security Pack software.
2818 
2819  /// CompassXport: Bruker stand-alone software for data conversion.
2820  MS_CompassXport = 1000717,
2821 
2822  /// CompassXtract: Bruker software library for data access.
2823  MS_CompassXtract = 1000718,
2824 
2825  /// DataAnalysis: Bruker software for data analysis.
2826  MS_DataAnalysis = 1000719,
2827 
2828  /// dpControl: Bruker software for data acquisition.
2829  MS_dpControl = 1000720,
2830 
2831  /// esquireControl: Bruker software for data acquisition.
2833 
2834  /// flexImaging: Bruker software for data analysis.
2835  MS_flexImaging = 1000722,
2836 
2837  /// GENOLINK: Bruker GENOLINK software.
2838  MS_GENOLINK = 1000723,
2839 
2840  /// GenoTools: Bruker GenoTools software.
2841  MS_GenoTools = 1000724,
2842 
2843  /// HCTcontrol: Bruker software for data acquisition.
2844  MS_HCTcontrol = 1000725,
2845 
2846  /// micrOTOFcontrol: Bruker software for data acquisition.
2848 
2849  /// PolyTools: Bruker PolyTools software.
2850  MS_PolyTools = 1000727,
2851 
2852  /// ProfileAnalysis: Bruker software for data analysis.
2854 
2855  /// PROTEINEER: Bruker PROTEINEER software.
2856  MS_PROTEINEER = 1000729,
2857 
2858  /// PROTEINEER dp: Bruker PROTEINEER dp software.
2859  MS_PROTEINEER_dp = 1000730,
2860 
2861  /// PROTEINEER fc: Bruker PROTEINEER fc software.
2862  MS_PROTEINEER_fc = 1000731,
2863 
2864  /// PROTEINEER spII: Bruker PROTEINEER spII software.
2866 
2867  /// PROTEINEER-LC: Bruker PROTEINEER-LC software.
2868  MS_PROTEINEER_LC = 1000733,
2869 
2870  /// ProteinScape: Bruker ProteinScape software.
2871  MS_ProteinScape = 1000734,
2872 
2873  /// PureDisk: BrukerPureDisk software.
2874  MS_PureDisk = 1000735,
2875 
2876  /// QuantAnalysis: Bruker software for data analysis.
2877  MS_QuantAnalysis = 1000736,
2878 
2879  /// spControl: Bruker software for data acquisition.
2880  MS_spControl = 1000737,
2881 
2882  /// TargetAnalysis: Bruker TargetAnalysis software.
2884 
2885  /// WARP-LC: Bruker WARP-LC software.
2886  MS_WARP_LC = 1000739,
2887 
2888  /// parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
2890 
2891  /// Conversion to dta: Conversion to dta format.
2893 
2894  /// Bioworks SRF format: Thermo Finnigan SRF file format.
2896 
2897  /// TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
2899 
2900  /// selected ion m/z: Mass-to-charge ratio of an selected ion.
2902 
2903  /// retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.
2905 
2906  /// high intensity data point removal: The removal of very high intensity data points.
2908 
2909  /// completion time: The time that a data processing action was finished.
2911 
2912  /// SSQ 7000: ThermoFinnigan SSQ 7000 MS.
2913  MS_SSQ_7000 = 1000748,
2914 
2915  /// TSQ 7000: ThermoFinnigan TSQ 7000 MS.
2916  MS_TSQ_7000 = 1000749,
2917 
2918  /// TSQ: ThermoFinnigan TSQ MS.
2919  MS_TSQ = 1000750,
2920 
2921  /// TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
2923 
2924  /// TOPP software: TOPP (The OpenMS proteomics pipeline) software.
2925  MS_TOPP_software = 1000752,
2926 
2927  /// BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
2929 
2930  /// DBExporter: Exports data from an OpenMS database to a file.
2931  MS_DBExporter = 1000754,
2932 
2933  /// DBImporter: Imports data to an OpenMS database.
2934  MS_DBImporter = 1000755,
2935 
2936  /// FileConverter: Converts between different MS file formats.
2937  MS_FileConverter = 1000756,
2938 
2939  /// FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
2940  MS_FileFilter = 1000757,
2941 
2942  /// FileMerger: Merges several MS files into one file.
2943  MS_FileMerger = 1000758,
2944 
2945  /// InternalCalibration: Applies an internal calibration.
2947 
2948  /// MapAligner: Corrects retention time distortions between maps.
2950 
2951  /// MapNormalizer: Normalizes peak intensities in an MS run.
2952  MS_MapNormalizer = 1000761,
2953 
2954  /// NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
2956 
2957  /// PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
2959 
2960  /// Resampler: Transforms an LC/MS map into a resampled map or a png image.
2961  MS_Resampler = 1000764,
2962 
2963  /// SpectraFilter: Applies a filter to peak spectra.
2965 
2966  /// TOFCalibration: Applies time of flight calibration.
2968 
2969  /// native spectrum identifier format: Describes how the native spectrum identifiers are formated.
2971 
2972  /// nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.
2974 
2975  /// Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.
2977 
2978  /// Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
2980 
2981  /// WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.
2983 
2984  /// Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2986 
2987  /// Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2989 
2990  /// Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
2992 
2993  /// multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
2995 
2996  /// single peak list nativeID format: Native format defined by file=xsd:IDREF.
2998 
2999  /// scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
3001 
3002  /// spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
3004 
3005  /// charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.
3007 
3008  /// below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z.
3010 
3011  /// precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.
3013 
3014  /// msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.
3016 
3017  /// Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.
3019 
3020  /// LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.
3022 
3023  /// Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3025 
3026  /// binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3028 
3029  /// Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
3031 
3032  /// moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3034 
3035  /// box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3037 
3038  /// boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3040 
3041  /// sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
3043 
3044  /// non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.
3046 
3047  /// inclusive low intensity threshold: Threshold at or below which some action is taken.
3049 
3050  /// inclusive high intensity threshold: Threshold at or above which some action is taken.
3052 
3053  /// enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.
3055 
3056  /// time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.
3058 
3059  /// enhanced resolution scan: Scan with enhanced resolution.
3061 
3062  /// isolation window attribute: Isolation window parameter.
3064 
3065  /// isolation window upper limit: The highest m/z being isolated in an isolation window.
3067 
3068  /// isolation window lower limit: The lowest m/z being isolated in an isolation window.
3070 
3071  /// no combination: Use this term if only one scan was recorded or there is no information about scans available.
3073 
3074  /// spectrum title: A free-form text title describing a spectrum.
3076 
3077  /// peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
3079 
3080  /// peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
3082 
3083  /// custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.
3085 
3086  /// mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.
3088 
3089  /// area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
3091 
3092  /// sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
3094 
3095  /// height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
3097 
3098  /// max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
3100 
3101  /// analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.
3103 
3104  /// electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
3106 
3107  /// EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
3109 
3110  /// emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.
3112 
3113  /// absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.
3115 
3116  /// Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
3117  MS_Th_s = 1000807,
3118 
3119  /// chromatogram attribute: Chromatogram properties that are associated with a value.
3121 
3122  /// chromatogram title: A free-form text title describing a chromatogram.
3124 
3125  /// mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.
3127 
3128  /// electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.
3130 
3131  /// EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.
3133 
3134  /// absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.
3136 
3137  /// emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.
3139 
3140  /// counts per second: The number of counted events observed per second in one or a group of elements of a detector.
3142 
3143  /// Bruker BAF format: Bruker BAF raw file format.
3145 
3146  /// Bruker U2 format: Bruker HyStar U2 file format.
3148 
3149  /// HyStar: Bruker software for hyphenated experiments.
3150  MS_HyStar = 1000817,
3151 
3152  /// Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
3154 
3155  /// Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
3157 
3158  /// flow rate array: A data array of flow rate measurements.
3160 
3161  /// pressure array: A data array of pressure measurements.
3163 
3164  /// temperature array: A data array of temperature measurements.
3166 
3167  /// Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
3169 
3170  /// no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.
3172 
3173  /// Bruker FID format: Bruker FID file format.
3175 
3176  /// elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography.
3177  MS_elution_time = 1000826,
3178 
3179  /// isolation window target m/z: The primary or reference m/z about which the isolation window is defined.
3181 
3182  /// isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3184 
3185  /// isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3187 
3188  /// sample preparation: Properties of the preparation steps which took place before the measurement was performed.
3190 
3191  /// MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.
3193 
3194  /// matrix application type: Describes the technique how the matrix is put on the sample target.
3196 
3197  /// matrix solution: Describes the chemical solution used as matrix.
3199 
3200  /// matrix solution concentration: Concentration of the chemical solution used as matrix.
3202 
3203  /// dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
3205 
3206  /// printed MALDI matrix preparation: Printed MALDI matrix preparation.
3208 
3209  /// sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
3211 
3212  /// precoated MALDI sample plate: Precoated MALDI sample plate.
3214 
3215  /// laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.
3216  MS_laser = 1000840,
3217 
3218  /// laser attribute: Laser properties that are associated with a value.
3220 
3221  /// laser type: Type of laser used for desorption purpose.
3222  MS_laser_type = 1000842,
3223 
3224  /// wavelength: The distance between two peaks of the emitted laser beam.
3226 
3227  /// focus diameter x: Describes the diameter of the laser beam in x direction.
3229 
3230  /// focus diameter y: Describes the diameter of the laser beam in y direction.
3232 
3233  /// pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.
3234  MS_pulse_energy = 1000846,
3235 
3236  /// pulse duration: Describes how long the laser beam was emitted from the laser device.
3238 
3239  /// attenuation: Describes the reduction of the intensity of the laser beam energy.
3240  MS_attenuation = 1000848,
3241 
3242  /// impact angle: Describes the angle between the laser beam and the sample target.
3243  MS_impact_angle = 1000849,
3244 
3245  /// gas laser: Laser which is powered by a gaseous medium.
3246  MS_gas_laser = 1000850,
3247 
3248  /// solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.
3250 
3251  /// dye-laser: Dye lasers use an organic dye as the gain medium.
3252  MS_dye_laser = 1000852,
3253 
3254  /// free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.
3256 
3257  /// LTQ XL: Thermo Scientific LTQ XL MS.
3258  MS_LTQ_XL = 1000854,
3259 
3260  /// LTQ Velos: Thermo Scientific LTQ Velos MS.
3261  MS_LTQ_Velos = 1000855,
3262 
3263  /// LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
3264  MS_LTQ_Velos_ETD = 1000856,
3265 
3266  /// run attribute: Properties of the described run.
3267  MS_run_attribute = 1000857,
3268 
3269  /// fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information.
3271 
3272  /// molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.
3273  MS_molecule = 1000859,
3274 
3275  /// peptide: A compound of low molecular weight that is composed of two or more amino acids.
3276  MS_peptide = 1000860,
3277 
3278  /// chemical compound attribute: A describable property of a chemical compound.
3280 
3281  /// isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.
3283 
3284  /// pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.
3286 
3287  /// predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3289 
3290  /// predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3292 
3293  /// chemical compound formula: A combination of symbols used to express the chemical composition of a compound.
3295 
3296  /// empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.
3298 
3299  /// molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.
3301 
3302  /// structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.
3304 
3305  /// SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.
3306  MS_SMILES_string = 1000868,
3307 
3308  /// collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
3310 
3311  /// 4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
3313 
3314  /// SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.
3315  MS_SRM_software = 1000871,
3316 
3317  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3318  MS_MaRiMba = 1000872,
3319 
3320  /// peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides.
3322 
3323  /// SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence.
3324  MS_SSRCalc = 1000874,
3325 
3326  /// declustering potential: Potential difference between the orifice and the skimmer in volts.
3328 
3329  /// cone voltage: Potential difference between the sampling cone/orifice in volts.
3330  MS_cone_voltage = 1000876,
3331 
3332  /// tube lens voltage: Potential difference setting of the tube lens in volts.
3334 
3335  /// external reference identifier: An identifier/accession number to an external reference database.
3337 
3338  /// PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
3340 
3341  /// interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.
3343 
3344  /// chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.
3346 
3347  /// protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.
3348  MS_protein = 1000882,
3349 
3350  /// protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
3352 
3353  /// protein attribute: An nonphysical attribute describing a specific protein.
3355 
3356  /// protein accession: Accession number for a specific protein in a database.
3358 
3359  /// protein name: A long name describing the function of the protein.
3360  MS_protein_name = 1000886,
3361 
3362  /// peptide attribute: A nonphysical attribute that can be used to describe a peptide.
3364 
3365  /// unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.
3367 
3368  /// modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.
3370 
3371  /// peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.
3373 
3374  /// heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes.
3376 
3377  /// unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3379 
3380  /// light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3382 
3383  /// peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.
3385 
3386  /// retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column.
3388 
3389  /// local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup.
3391 
3392  /// normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup.
3394 
3395  /// predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application.
3397 
3398  /// standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.
3399  MS_standard = 1000898,
3400 
3401  /// de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.
3403 
3404  /// minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.
3406 
3407  /// retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.
3409 
3410  /// H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.
3412 
3413  /// product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
3415 
3416  /// product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.
3418 
3419  /// percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.
3421 
3422  /// peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
3424 
3425  /// peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.
3427 
3428  /// transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3429  MS_transition = 1000908,
3430 
3431  /// reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3433 
3434  /// transition validation method: The strategy used to validate that a transition is effective.
3436 
3437  /// transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.
3439 
3440  /// transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.
3442 
3443  /// transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).
3445 
3446  /// transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.
3448 
3449  /// tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character.
3451 
3452  /// retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.
3454 
3455  /// retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time.
3457 
3458  /// retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time.
3460 
3461  /// target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.
3462  MS_target_list = 1000918,
3463 
3464  /// target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.
3466 
3467  /// includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.
3469 
3470  /// excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.
3472 
3473  /// Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington.
3474  MS_Skyline = 1000922,
3475 
3476  /// TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.
3477  MS_TIQAM = 1000923,
3478 
3479  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3481 
3482  /// ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.
3483  MS_ATAQS = 1000925,
3484 
3485  /// product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.
3487 
3488  /// ion injection time: The length of time spent filling an ion trapping device.
3490 
3491  /// calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.
3493 
3494  /// Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.
3496 
3497  /// Shimadzu Biotech database entity: Shimadzu Biotech format.
3499 
3500  /// QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
3501  MS_QTRAP_5500 = 1000931,
3502 
3503  /// TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
3505 
3506  /// protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.
3508 
3509  /// gene name: Name of the gene from which the protein is translated.
3510  MS_gene_name = 1000934,
3511 
3512  /// spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.
3514 
3515  /// SEQUEST:CleavesAt:
3517 
3518  /// SEQUEST:ViewCV: SEQUEST View Input Parameters.
3520 
3521  /// SEQUEST:OutputLines: Number of peptide results to show.
3523 
3524  /// SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
3526 
3527  /// de novo search: A de novo sequencing search (without database).
3529 
3530  /// search database details: Details about the database searched.
3532 
3533  /// database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).
3535 
3536  /// database name: The name of the search database (nr, SwissProt or est_human).
3537  MS_database_name = 1001013,
3538 
3539  /// database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.
3541 
3542  /// database original uri: URI, from where the search database was originally downloaded.
3544 
3545  /// database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
3547 
3548  /// database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.
3550 
3551  /// database type: Database containing amino acid or nucleic acid sequences.
3552  MS_database_type = 1001018,
3553 
3554  /// database filtering: Was there filtering used on the database.
3556 
3557  /// DB filter taxonomy: A taxonomy filter was to the database search.
3559 
3560  /// DB filter on accession numbers: Filtering applied specifically by accession number pattern.
3562 
3563  /// DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.
3564  MS_DB_MW_filter = 1001022,
3565 
3566  /// DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.
3567  MS_DB_PI_filter = 1001023,
3568 
3569  /// translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6).
3571 
3572  /// translation table: The translation table used to translate the nucleotides to amino acids.
3574 
3575  /// SEQUEST:NormalizeXCorrValues:
3577 
3578  /// DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
3580 
3581  /// SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
3583 
3584  /// number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.
3586 
3587  /// number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
3589 
3590  /// spectral library search: A search using a library of spectra.
3592 
3593  /// SEQUEST:SequencePartialFilter:
3595 
3596  /// date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.
3598 
3599  /// search time taken: The time taken to complete the search in seconds.
3601 
3602  /// SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
3604 
3605  /// SEQUEST:Consensus: Specify depth as value of the CVParam.
3607 
3608  /// intermediate analysis format: Type of the source file, the mzIdentML was created from.
3610 
3611  /// SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
3613 
3614  /// SEQUEST:LimitTo: Specify \"number of dtas shown\" as value of the CVParam.
3616 
3617  /// cleavage agent details: Details of cleavage agent (enzyme).
3619 
3620  /// cleavage agent name: The name of the cleavage agent.
3622 
3623  /// SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score.
3625 
3626  /// SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M.
3628 
3629  /// SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
3631 
3632  /// SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
3634 
3635  /// SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
3637 
3638  /// multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.
3640 
3641  /// SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid.
3643 
3644  /// SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
3646 
3647  /// modification parameters: Modification parameters for the search engine run.
3649 
3650  /// modification specificity rule: The specificity rules for the modifications applied by the search engine.
3652 
3653  /// tolerance on types: OBSOLETE: Tolerance on types.
3655 
3656  /// quality estimation by manual validation: The quality estimation was done manually.
3658 
3659  /// SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide).
3661 
3662  /// quality estimation method details: Method for quality estimation (manually or with decoy database).
3664 
3665  /// neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
3667 
3668  /// Mascot MGF format: Mascot MGF file format.
3670 
3671  /// TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms.
3673 
3674  /// ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine.
3676 
3677  /// SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
3679 
3680  /// SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
3682 
3683  /// SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
3685 
3686  /// SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
3688 
3689  /// SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
3691 
3692  /// database type amino acid: Database contains amino acid sequences.
3694 
3695  /// database type nucleotide: Database contains nucleic acid sequences.
3697 
3698  /// search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
3699  MS_search_type = 1001080,
3700 
3701  /// pmf search: A peptide mass fingerprint search.
3702  MS_pmf_search = 1001081,
3703 
3704  /// tag search: A sequence tag search.
3705  MS_tag_search = 1001082,
3706 
3707  /// ms-ms search: An MS2 search (with fragment ions).
3708  MS_ms_ms_search = 1001083,
3709 
3710  /// database nr: Non-redundant GenBank sequence database.
3711  MS_database_nr = 1001084,
3712 
3713  /// protein-level identification attribute: Protein level information.
3715 
3716  /// SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
3718 
3719  /// SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
3721 
3722  /// protein description: The protein description line from the sequence entry in the source database FASTA file.
3724 
3725  /// molecule taxonomy: The taxonomy of the resultant molecule from the search.
3727 
3728  /// taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).
3730 
3731  /// NoEnzyme:
3733 
3734  /// peptide sequence-level identification statistic: Identification confidence metric for a peptide.
3736 
3737  /// sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).
3739 
3740  /// SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
3742 
3743  /// SEQUEST:ProcessAll:
3745 
3746  /// SEQUEST:TopPercentMostIntense: Specify \"percentage\" as value of the CVParam.
3748 
3749  /// distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.
3751 
3752  /// confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
3754 
3755  /// confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.
3757 
3758  /// confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.
3760 
3761  /// protein group or subset relationship: Protein group or subset relationships.
3763 
3764  /// SEQUEST:Chromatogram:
3766 
3767  /// SEQUEST:InfoAndLog:
3769 
3770  /// database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
3772 
3773  /// peptide sequence-level identification attribute: Peptide level information.
3775 
3776  /// SEQUEST:TopNumber: Specify \"number\" as value of the CVParam.
3778 
3779  /// data stored in database: Source file for this mzIdentML was a data set in a database.
3781 
3782  /// param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
3783  MS_param__a_ion = 1001108,
3784 
3785  /// SEQUEST:CullTo: Specify cull string as value of the CVParam.
3787 
3788  /// SEQUEST:modeCV: SEQUEST Mode Input Parameters.
3790 
3791  /// SEQUEST:Full:
3792  MS_SEQUEST_Full = 1001111,
3793 
3794  /// n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.
3796 
3797  /// c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.
3799 
3800  /// retention time(s): Retention time of the spectrum from the source file.
3802 
3803  /// scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
3805 
3806  /// single protein identification statistic: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).
3808 
3809  /// theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).
3811 
3812  /// param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
3813  MS_param__b_ion = 1001118,
3814 
3815  /// param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
3816  MS_param__c_ion = 1001119,
3817 
3818  /// SEQUEST:FormatAndLinks:
3820 
3821  /// number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.
3823 
3824  /// ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb).
3826 
3827  /// number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.
3829 
3830  /// number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.
3832 
3833  /// manual validation: Result of quality estimation: decision of a manual validation.
3835 
3836  /// SEQUEST:Fast:
3837  MS_SEQUEST_Fast = 1001126,
3838 
3839  /// peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.
3841 
3842  /// SEQUEST:selectCV: SEQUEST Select Input Parameters.
3844 
3845  /// quantification information: Quantification information.
3847 
3848  /// peptide raw area: Peptide raw area.
3850 
3851  /// error on peptide area: Error on peptide area.
3853 
3854  /// peptide ratio: Peptide ratio.
3855  MS_peptide_ratio = 1001132,
3856 
3857  /// error on peptide ratio: Error on peptide ratio.
3859 
3860  /// protein ratio: Protein ratio.
3861  MS_protein_ratio = 1001134,
3862 
3863  /// error on protein ratio: Error on protein ratio.
3865 
3866  /// p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
3868 
3869  /// absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.
3871 
3872  /// error on absolute quantity: Error on absolute quantity.
3874 
3875  /// quantitation software name: Quantitation software name.
3877 
3878  /// quantitation software version: Quantitation software version.
3880 
3881  /// intensity of precursor ion: The intensity of the precursor ion.
3883 
3884  /// database IPI_human: International Protein Index database for Homo sapiens sequences.
3886 
3887  /// PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.
3889 
3890  /// SEQUEST:SelectDefault:
3892 
3893  /// SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
3895 
3896  /// param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia.
3898 
3899  /// protein ambiguity group result details:
3901 
3902  /// param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
3904 
3905  /// param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia.
3907 
3908  /// param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
3910 
3911  /// param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia.
3913 
3914  /// param: y ion-H2O DEPRECATED:
3916 
3917  /// search engine specific score: Search engine specific scores.
3919 
3920  /// SEQUEST:probability: The SEQUEST result 'Probability'.
3922 
3923  /// SEQUEST:xcorr: The SEQUEST result 'XCorr'.
3924  MS_SEQUEST_xcorr = 1001155,
3925 
3926  /// SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
3928 
3929  /// SEQUEST:sp: The SEQUEST result 'Sp' (protein).
3930  MS_SEQUEST_sp = 1001157,
3931 
3932  /// SEQUEST:Uniq:
3933  MS_SEQUEST_Uniq = 1001158,
3934 
3935  /// SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
3937 
3938  /// SEQUEST:sf: The SEQUEST result 'Sf'.
3939  MS_SEQUEST_sf = 1001160,
3940 
3941  /// SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
3943 
3944  /// SEQUEST:total ions: The SEQUEST result 'Total Ions'.
3946 
3947  /// SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
3949 
3950  /// Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
3952 
3953  /// Paragon:total protscore: The Paragon result 'Total ProtScore'.
3955 
3956  /// Paragon:score: The Paragon result 'Score'.
3957  MS_Paragon_score = 1001166,
3958 
3959  /// Paragon:confidence: The Paragon result 'Confidence'.
3961 
3962  /// Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
3964 
3965  /// Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
3967 
3968  /// Paragon:contrib: The Paragon result 'Contrib'.
3970 
3971  /// Mascot:score: The Mascot result 'Score'.
3972  MS_Mascot_score = 1001171,
3973 
3974  /// Mascot:expectation value: The Mascot result 'expectation value'.
3976 
3977  /// Mascot:matched ions: The Mascot result 'Matched ions'.
3979 
3980  /// Mascot:total ions: The Mascot result 'Total ions'.
3982 
3983  /// peptide shared in multiple proteins: A peptide matching multiple proteins.
3985 
3986  /// (?<=[KR])(?!P): Regular expression for Trypsin.
3988 
3989  /// number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.
3991 
3992  /// database EST: Expressed sequence tag nucleotide sequence database.
3993  MS_database_EST = 1001178,
3994 
3995  /// Cleavage agent regular expression: Regular expressions for cleavage enzymes.
3997 
3998  /// search statistics: The details of the actual run of the search.
4000 
4001  /// modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide.
4003 
4004  /// modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide.
4006 
4007  /// p-value: Quality estimation by p-value.
4009 
4010  /// Expect value: Result of quality estimation: Expect value.
4011  MS_Expect_value = 1001192,
4012 
4013  /// confidence score: Result of quality estimation: confidence score.
4015 
4016  /// quality estimation with decoy database: Quality estimation by decoy database.
4018 
4019  /// decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
4021 
4022  /// decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).
4024 
4025  /// DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.
4027 
4028  /// protein identification confidence metric: Identification confidence metric for a protein.
4030 
4031  /// Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
4033 
4034  /// SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
4036 
4037  /// DB MW filter maximum: Maximum value of molecular weight filter.
4039 
4040  /// DB MW filter minimum: Minimum value of molecular weight filter.
4042 
4043  /// DB PI filter maximum: Maximum value of isoelectric point filter.
4045 
4046  /// DB PI filter minimum: Minimum value of isoelectric point filter.
4048 
4049  /// Mascot: The name of the Mascot search engine.
4050  MS_Mascot = 1001207,
4051 
4052  /// SEQUEST: The name of the SEQUEST search engine.
4053  MS_SEQUEST = 1001208,
4054 
4055  /// Phenyx: The name of the Phenyx search engine.
4056  MS_Phenyx = 1001209,
4057 
4058  /// mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).
4060 
4061  /// parent mass type mono: Mass type setting for parent mass was monoisotopic.
4063 
4064  /// parent mass type average: Mass type setting for parent mass was average isotopic.
4066 
4067  /// search result details: OBSOLETE: Scores and global result characteristics.
4069 
4070  /// protein-level global FDR: Estimation of the global false discovery rate of proteins.
4072 
4073  /// SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
4075 
4076  /// SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
4078 
4079  /// SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
4081 
4082  /// SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
4084 
4085  /// frag: y ion: Fragmentation information, type of product: y ion.
4086  MS_frag__y_ion = 1001220,
4087 
4088  /// product ion attribute: Fragmentation information like ion types.
4090 
4091  /// frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
4093 
4094  /// frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
4096 
4097  /// frag: b ion: Fragmentation information, type of product: b ion.
4098  MS_frag__b_ion = 1001224,
4099 
4100  /// product ion m/z: The m/z of the product ion.
4102 
4103  /// fragment ion m/z (product ion m/z): The m/z of the product ion.
4105 
4106  /// product ion intensity: The intensity of a single product ion.
4108 
4109  /// fragment ion intensity (product ion intensity): The intensity of a single product ion.
4111 
4112  /// product ion m/z error: The product ion m/z error.
4114 
4115  /// frag: x ion: Fragmentation information, type of product: x ion.
4116  MS_frag__x_ion = 1001228,
4117 
4118  /// frag: a ion: Fragmentation information, type of product: a ion.
4119  MS_frag__a_ion = 1001229,
4120 
4121  /// frag: z ion: Fragmentation information, type of product: z ion.
4122  MS_frag__z_ion = 1001230,
4123 
4124  /// frag: c ion: Fragmentation information, type of product: c ion.
4125  MS_frag__c_ion = 1001231,
4126 
4127  /// frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
4129 
4130  /// frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
4132 
4133  /// frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
4135 
4136  /// frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
4138 
4139  /// frag: d ion: Fragmentation information, type of product: d ion.
4140  MS_frag__d_ion = 1001236,
4141 
4142  /// frag: v ion: Fragmentation information, type of product: v ion.
4143  MS_frag__v_ion = 1001237,
4144 
4145  /// frag: w ion: Fragmentation information, type of product: w ion.
4146  MS_frag__w_ion = 1001238,
4147 
4148  /// frag: immonium ion: Fragmentation information, type of product: immonium ion.
4150 
4151  /// non-identified ion: Non-identified ion.
4153 
4154  /// co-eluting ion: Co-eluting ion.
4156 
4157  /// SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
4159 
4160  /// SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
4162 
4163  /// PerSeptive PKS format: PerSeptive peak list file format.
4165 
4166  /// SCIEX API III format: PE SCIEX peak list file format.
4168 
4169  /// Bruker XML format: Bruker data exchange XML format.
4171 
4172  /// search input details: Details describing the search input.
4174 
4175  /// local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
4176  MS_local_FDR = 1001250,
4177 
4178  /// Trypsin: Enzyme trypsin.
4179  MS_Trypsin = 1001251,
4180 
4181  /// DB source EBI: Database source EBI.
4182  MS_DB_source_EBI = 1001252,
4183 
4184  /// DB source NCBI: Database source NCBI.
4186 
4187  /// DB source UniProt: Database source UniProt.
4189 
4190  /// fragment mass type average: Mass type setting for fragment mass was average isotopic.
4192 
4193  /// fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
4195 
4196  /// param: v ion: Parameter information, type of product: side chain loss v ion.
4197  MS_param__v_ion = 1001257,
4198 
4199  /// param: d ion: Parameter information, type of product: side chain loss d ion.
4200  MS_param__d_ion = 1001258,
4201 
4202  /// param: immonium ion: Parameter information, type of product: immonium ion.
4204 
4205  /// param: w ion: Parameter information, type of product: side chain loss w ion.
4206  MS_param__w_ion = 1001260,
4207 
4208  /// param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
4209  MS_param__x_ion = 1001261,
4210 
4211  /// param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
4212  MS_param__y_ion = 1001262,
4213 
4214  /// param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
4215  MS_param__z_ion = 1001263,
4216 
4217  /// role type: Role of a Person or Organization.
4218  MS_role_type = 1001266,
4219 
4220  /// software vendor: Software vendor role.
4222 
4223  /// programmer: Programmer role.
4224  MS_programmer = 1001268,
4225 
4226  /// instrument vendor: Instrument vendor role.
4228 
4229  /// lab personnel: Lab personnel role.
4230  MS_lab_personnel = 1001270,
4231 
4232  /// researcher: Researcher role.
4233  MS_researcher = 1001271,
4234 
4235  /// (?<=R)(?!P): Regular expression for Arg-C.
4236  MS_____R____P_ = 1001272,
4237 
4238  /// (?=[BD]): Regular expression for Asp-N.
4239  MS_____BD__ = 1001273,
4240 
4241  /// (?=[DE]): Regular expression for Asp-N-ambic.
4242  MS_____DE__ = 1001274,
4243 
4244  /// ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
4246 
4247  /// ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
4249 
4250  /// decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
4252 
4253  /// decoy DB derived from: The name of the database, the search database was derived from.
4255 
4256  /// database IPI_mouse: International Protein Index database for Mus musculus sequences.
4258 
4259  /// database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
4261 
4262  /// database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
4264 
4265  /// database IPI_chicken: International Protein Index database for Gallus gallus sequences.
4267 
4268  /// database IPI_cow: International Protein Index database for Bos taurus sequences.
4270 
4271  /// database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
4273 
4274  /// decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
4276 
4277  /// decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus.
4279 
4280  /// decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
4282 
4283  /// decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana.
4285 
4286  /// decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
4288 
4289  /// decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio.
4291 
4292  /// decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
4294 
4295  /// decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus.
4297 
4298  /// decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
4300 
4301  /// decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
4303 
4304  /// protein rank: The rank of the protein in a list sorted by the search engine.
4305  MS_protein_rank = 1001301,
4306 
4307  /// search engine specific input parameter: Search engine specific input parameters.
4309 
4310  /// Arg-C: Endoproteinase Arg-C.
4311  MS_Arg_C = 1001303,
4312 
4313  /// Trypsin/R (Arg-C): Endoproteinase Arg-C.
4315 
4316  /// Clostripain (Arg-C): Endoproteinase Arg-C.
4318 
4319  /// Asp-N: Endoproteinase Asp-N.
4320  MS_Asp_N = 1001304,
4321 
4322  /// Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
4323  MS_Asp_N_ambic = 1001305,
4324 
4325  /// Chymotrypsin: Enzyme chymotrypsin.
4326  MS_Chymotrypsin = 1001306,
4327 
4328  /// CNBr: Cyanogen bromide.
4329  MS_CNBr = 1001307,
4330 
4331  /// Formic_acid: Formic acid.
4332  MS_Formic_acid = 1001308,
4333 
4334  /// Lys-C: Endoproteinase Lys-C.
4335  MS_Lys_C = 1001309,
4336 
4337  /// Trypsin/K (Lys-C): Endoproteinase Lys-C.
4339 
4340  /// Lys-C/P: Proteinase Lys-C/P.
4341  MS_Lys_C_P = 1001310,
4342 
4343  /// PepsinA: PepsinA proteinase.
4344  MS_PepsinA = 1001311,
4345 
4346  /// TrypChymo: Cleavage agent TrypChymo.
4347  MS_TrypChymo = 1001312,
4348 
4349  /// Trypsin/P: Cleavage agent Trypsin/P.
4350  MS_Trypsin_P = 1001313,
4351 
4352  /// V8-DE: Cleavage agent V8-DE.
4353  MS_V8_DE = 1001314,
4354 
4355  /// V8-E: Cleavage agent V8-E.
4356  MS_V8_E = 1001315,
4357 
4358  /// Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05).
4360 
4361  /// Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
4363 
4364  /// Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
4366 
4367  /// Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed.
4369 
4370  /// Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed.
4372 
4373  /// Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed.
4375 
4376  /// Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits.
4378 
4379  /// Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use.
4381 
4382  /// Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included.
4384 
4385  /// Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database.
4387 
4388  /// add_others: OBSOLETE.
4390 
4391  /// OMSSA:evalue: OMSSA E-value.
4392  MS_OMSSA_evalue = 1001328,
4393 
4394  /// OMSSA:pvalue: OMSSA p-value.
4395  MS_OMSSA_pvalue = 1001329,
4396 
4397  /// X!Tandem:expect: The X!Tandem expectation value.
4399 
4400  /// X!Tandem:hyperscore: The X!Tandem hyperscore.
4402 
4403  /// (?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
4405 
4406  /// (?<=M): Regular expression for CNBr.
4407  MS_____M_ = 1001333,
4408 
4409  /// ((?<=D))|((?=D)): Regular expression for formic acid.
4411 
4412  /// (?<=K)(?!P): Regular expression for Lys-C.
4413  MS_____K____P_ = 1001335,
4414 
4415  /// (?<=K): Regular expression for Lys-C/P.
4416  MS_____K_ = 1001336,
4417 
4418  /// (?<=[FL]): Regular expression for PepsinA.
4419  MS______FL__ = 1001337,
4420 
4421  /// (?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
4423 
4424  /// (?<=[KR]): Regular expression for Trypsin/P.
4425  MS______KR__ = 1001339,
4426 
4427  /// (?<=[BDEZ])(?!P): Regular expression for V8-DE.
4429 
4430  /// (?<=[EZ])(?!P): Regular expression for V8-E.
4432 
4433  /// database sequence details: Details about a single database sequence.
4435 
4436  /// NA sequence: The sequence is a nucleic acid sequence.
4437  MS_NA_sequence = 1001343,
4438 
4439  /// AA sequence: The sequence is a amino acid sequence.
4440  MS_AA_sequence = 1001344,
4441 
4442  /// mass table source: Children of this term specify the source of the mass table used.
4444 
4445  /// AAIndex mass table: The masses used in the mass table are taken from AAIndex.
4447 
4448  /// database file formats: The children of this term define file formats of the sequence database used.
4450 
4451  /// FASTA format: The sequence database was stored in the FASTA format.
4452  MS_FASTA_format = 1001348,
4453 
4454  /// ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
4455  MS_ASN_1 = 1001349,
4456 
4457  /// NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
4458  MS_NCBI___p_ = 1001350,
4459 
4460  /// clustal aln: ClustalW ALN (multiple alignment) format.
4461  MS_clustal_aln = 1001351,
4462 
4463  /// embl em: EMBL entry format.
4464  MS_embl_em = 1001352,
4465 
4466  /// NBRF PIR: The NBRF PIR was used as format.
4467  MS_NBRF_PIR = 1001353,
4468 
4469  /// mass table options: Root node for options for the mass table used.
4471 
4472  /// peptide descriptions: Descriptions of peptides.
4474 
4475  /// spectrum descriptions: Descriptions of the input spectra.
4477 
4478  /// spectrum quality descriptions: Description of the quality of the input spectrum.
4480 
4481  /// msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
4483 
4484  /// ambiguous residues: Children of this term describe ambiguous residues.
4486 
4487  /// alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.
4489 
4490  /// alternate mass: List of masses a non-standard letter code is replaced with.
4492 
4493  /// number of unmatched peaks: The number of unmatched peaks.
4495 
4496  /// peptide unique to one protein: A peptide matching only one.
4498 
4499  /// peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
4501 
4502  /// frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
4504 
4505  /// frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
4507 
4508  /// frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
4509  MS_frag__z_1_ion = 1001367,
4510 
4511  /// frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
4512  MS_frag__z_2_ion = 1001368,
4513 
4514  /// text format: Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search.
4515  MS_text_format = 1001369,
4516 
4517  /// Mascot:homology threshold: The Mascot result 'homology threshold'.
4519 
4520  /// Mascot:identity threshold: The Mascot result 'identity threshold'.
4522 
4523  /// SEQUEST:Sequences:
4525 
4526  /// SEQUEST:TIC: SEQUEST total ion current.
4527  MS_SEQUEST_TIC = 1001373,
4528 
4529  /// SEQUEST:Sum:
4530  MS_SEQUEST_Sum = 1001374,
4531 
4532  /// Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
4534 
4535  /// Phenyx:Scoring Model: The selected scoring model in Phenyx.
4537 
4538  /// Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
4540 
4541  /// Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct.
4543 
4544  /// Phenyx:Turbo: The turbo mode parameter in Phenyx.
4545  MS_Phenyx_Turbo = 1001379,
4546 
4547  /// Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx.
4549 
4550  /// Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
4552 
4553  /// Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
4555 
4556  /// Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx.
4558 
4559  /// Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx.
4561 
4562  /// Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx.
4564 
4565  /// Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx.
4567 
4568  /// Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used.
4570 
4571  /// Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
4572  MS_Phenyx_AC = 1001388,
4573 
4574  /// Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
4575  MS_Phenyx_ID = 1001389,
4576 
4577  /// Phenyx:Score: The protein score of a protein match in Phenyx.
4578  MS_Phenyx_Score = 1001390,
4579 
4580  /// Phenyx:Peptides1: First number of phenyx result \"#Peptides\".
4582 
4583  /// Phenyx:Peptides2: Second number of phenyx result \"#Peptides\".
4585 
4586  /// Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
4587  MS_Phenyx_Auto = 1001393,
4588 
4589  /// Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
4590  MS_Phenyx_User = 1001394,
4591 
4592  /// Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
4594 
4595  /// Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
4597 
4598  /// Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
4600 
4601  /// Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx.
4602  MS_Phenyx_Modif = 1001398,
4603 
4604  /// OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
4606 
4607  /// OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
4609 
4610  /// X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
4612 
4613  /// spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.
4615 
4616  /// param: internal yb ion: Parameter information, type of product: internal yb ion.
4618 
4619  /// param: internal ya ion: Parameter information, type of product: internal ya ion.
4621 
4622  /// param: z+1 ion: Parameter information, type of product: z+1 ion.
4624 
4625  /// param: z+2 ion: Parameter information, type of product: z+2 ion.
4627 
4628  /// translation start codons: The translation start codons used to translate the nucleotides to amino acids.
4630 
4631  /// search tolerance specification: Specification of the search tolerance.
4633 
4634  /// search tolerance plus value:
4636 
4637  /// search tolerance minus value:
4639 
4640  /// MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.
4642 
4643  /// MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.
4645 
4646  /// spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.
4648 
4649  /// SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
4650  MS_SpectraST_dot = 1001417,
4651 
4652  /// SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
4654 
4655  /// SpectraST:discriminant score F: SpectraST spectrum score.
4657 
4658  /// SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
4660 
4661  /// pepXML format: The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers.
4662  MS_pepXML_format = 1001421,
4663 
4664  /// protXML format: The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers.
4666 
4667  /// translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.
4669 
4670  /// ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
4672 
4673  /// ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated.
4675 
4676  /// ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
4678 
4679  /// ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
4681 
4682  /// ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
4684 
4685  /// ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
4687 
4688  /// ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score.
4690 
4691  /// ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score.
4693 
4694  /// ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation.
4696 
4697  /// ProteinExtractor:MascotUseIdentityScore:
4699 
4700  /// ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4702 
4703  /// ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score.
4705 
4706  /// ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score.
4708 
4709  /// ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation.
4711 
4712  /// ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4714 
4715  /// ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4717 
4718  /// ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4720 
4721  /// ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation.
4723 
4724  /// ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4726 
4727  /// ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score.
4729 
4730  /// ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score.
4732 
4733  /// ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation.
4735 
4736  /// ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4738 
4739  /// prot:FDR threshold: False-discovery rate threshold for proteins.
4741 
4742  /// pep:FDR threshold: False-discovery rate threshold for peptides.
4744 
4745  /// OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
4747 
4748  /// decoy DB details: Details of decoy generation and database structure.
4750 
4751  /// decoy DB generation algorithm: Name of algorithm used for decoy generation.
4753 
4754  /// decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
4756 
4757  /// DB composition only decoy: Decoy database composition: database contains only decoy entries.
4759 
4760  /// quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).
4762 
4763  /// acquisition software: Acquisition software.
4765 
4766  /// analysis software: Analysis software.
4768 
4769  /// data processing software: Data processing software.
4771 
4772  /// spectrum generation information: Vocabularies describing the spectrum generation information.
4774 
4775  /// file format: Format of data files.
4776  MS_file_format = 1001459,
4777 
4778  /// unknown modification: This term should be given if the modification was unknown.
4780 
4781  /// greylag: Greylag identification software.
4782  MS_greylag = 1001461,
4783 
4784  /// PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
4785  MS_PEFF_format = 1001462,
4786 
4787  /// Phenyx XML format: Phenyx open XML file format.
4789 
4790  /// DTASelect format: DTASelect file format.
4792 
4793  /// MS2 format: MS2 file format for MS2 spectral data.
4794  MS_MS2_format = 1001466,
4795 
4796  /// taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
4798 
4799  /// taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4801 
4802  /// taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4804 
4805  /// taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4807 
4808  /// peptide modification details: The children of this term can be used to describe modifications.
4810 
4811  /// selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4813 
4814  /// SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4816 
4817  /// selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4819 
4820  /// SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4822 
4823  /// consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4825 
4826  /// CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4828 
4829  /// OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
4830  MS_OMSSA = 1001475,
4831 
4832  /// X!Tandem: X!Tandem was used to analyze the spectra.
4833  MS_X_Tandem = 1001476,
4834 
4835  /// SpectraST: SpectraST was used to analyze the spectra.
4836  MS_SpectraST = 1001477,
4837 
4838  /// Mascot Parser: Mascot Parser was used to analyze the spectra.
4839  MS_Mascot_Parser = 1001478,
4840 
4841  /// null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.
4843 
4844  /// SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.
4846 
4847  /// SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
4849 
4850  /// 5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
4851  MS_5800_TOF_TOF = 1001482,
4852 
4853  /// SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.
4855 
4856  /// intensity normalization: Normalization of data point intensities.
4858 
4859  /// m/z calibration: Calibration of data point m/z positions.
4861 
4862  /// data filtering: Filtering out part of the data.
4864 
4865  /// ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.
4867 
4868  /// Mascot Distiller: Mascot Distiller.
4870 
4871  /// Mascot Integra: Mascot Integra.
4873 
4874  /// Percolator: Percolator.
4875  MS_Percolator = 1001490,
4876 
4877  /// percolator:Q value: Percolator:Q value.
4879 
4880  /// percolator:score: Percolator:score.
4882 
4883  /// percolator:PEP: Posterior error probability.
4885 
4886  /// no threshold: In case no threshold was used.
4887  MS_no_threshold = 1001494,
4888 
4889  /// ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.
4891 
4892  /// ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
4894 
4895  /// ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
4897 
4898  /// Profound:z value: The Profound z value.
4900 
4901  /// Profound:Cluster: The Profound cluster score.
4903 
4904  /// Profound:ClusterRank: The Profound cluster rank.
4906 
4907  /// MSFit:Mowse score: The MSFit Mowse score.
4909 
4910  /// Sonar:Score: The Sonar score.
4911  MS_Sonar_Score = 1001502,
4912 
4913  /// ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
4915 
4916  /// ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
4918 
4919  /// ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.
4921 
4922  /// ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores.
4924 
4925  /// ProteinExtractor:Score: The score calculated by ProteinExtractor.
4927 
4928  /// Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
4930 
4931  /// Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.
4933 
4934  /// TSQ Vantage: TSQ Vantage.
4935  MS_TSQ_Vantage = 1001510,
4936 
4937  /// Sequence database filter types: Filter types which are used to filter a sequence database.
4939 
4940  /// Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
4942 
4943  /// DB sequence filter pattern: DB sequence filter pattern.
4945 
4946  /// DB accession filter string: DB accession filter string.
4948 
4949  /// frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
4951 
4952  /// frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
4954 
4955  /// frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
4957 
4958  /// frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
4960 
4961  /// frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
4963 
4964  /// frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
4966 
4967  /// frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
4969 
4970  /// frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
4972 
4973  /// frag: precursor ion: Fragmentation information, type of product: precursor ion.
4975 
4976  /// fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4978 
4979  /// precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4981 
4982  /// spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
4984 
4985  /// Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
4987 
4988  /// Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
4990 
4991  /// spectra data details: Child-terms contain information to map the results back to spectra.
4993 
4994  /// mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
4996 
4997  /// spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
4999 
5000  /// spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
5002 
5003  /// Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
5005 
5006  /// Bruker Daltonics flex series: Bruker Daltonics' flex series.
5008 
5009  /// Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
5011 
5012  /// Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
5014 
5015  /// BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
5016  MS_BioTOF = 1001537,
5017 
5018  /// BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
5019  MS_BioTOF_III = 1001538,
5020 
5021  /// UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
5022  MS_UltroTOF_Q = 1001539,
5023 
5024  /// micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
5025  MS_micrOTOF_II = 1001540,
5026 
5027  /// maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
5028  MS_maXis = 1001541,
5029 
5030  /// amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
5031  MS_amaZon_ETD = 1001542,
5032 
5033  /// microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
5034  MS_microflex_LRF = 1001543,
5035 
5036  /// ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
5038 
5039  /// Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
5041 
5042  /// amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
5043  MS_amaZon_X = 1001546,
5044 
5045  /// Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
5047 
5048  /// Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
5050 
5051  /// solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
5052  MS_solariX = 1001549,
5053 
5054  /// microflex II: Bruker Daltonics' microflex II: MALDI TOF.
5055  MS_microflex_II = 1001550,
5056 
5057  /// autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
5059 
5060  /// autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
5062 
5063  /// autoflex: Bruker Daltonics' autoflex: MALDI TOF.
5064  MS_autoflex = 1001555,
5065 
5066  /// Bruker Daltonics apex series: Bruker Daltonics' apex series.
5068 
5069  /// Shimadzu Corporation software: Shimadzu Corporation software.
5071 
5072  /// MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
5074 
5075  /// SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
5077 
5078  /// SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.
5080 
5081  /// Scaffold: Scaffold analysis software.
5082  MS_Scaffold = 1001561,
5083 
5084  /// Scaffold nativeID format: Scaffold native ID format.
5086 
5087  /// SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
5089 
5090  /// Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
5092 
5093  /// IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
5095 
5096  /// ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
5098 
5099  /// SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.
5101 
5102  /// Scaffold:Peptide Probability: Scaffold peptide probability score.
5104 
5105  /// IdentityE Score: Waters IdentityE peptide score.
5107 
5108  /// ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
5110 
5111  /// ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
5113 
5114  /// SpectrumMill:Score: Spectrum mill peptide score.
5116 
5117  /// SpectrumMill:SPI: SpectrumMill SPI score (%).
5119 
5120  /// report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins.
5122 
5123  /// Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
5125 
5126  /// Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.
5128 
5129  /// Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.
5131 
5132  /// minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted.
5134 
5135  /// Scaffold:Protein Probability: Scaffold protein probability score.
5137 
5138  /// SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
5140 
5141  /// FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
5143 
5144  /// FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
5146 
5147  /// XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
5148  MS_XCMS = 1001582,
5149 
5150  /// MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
5151  MS_MaxQuant = 1001583,
5152 
5153  /// combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF).
5155 
5156  /// MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
5157  MS_MyriMatch = 1001585,
5158 
5159  /// DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
5160  MS_DirecTag = 1001586,
5161 
5162  /// TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
5163  MS_TagRecon = 1001587,
5164 
5165  /// Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
5166  MS_Pepitome = 1001588,
5167 
5168  /// MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5169  MS_MyriMatch_MVH = 1001589,
5170 
5171  /// Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5173 
5174  /// TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5176 
5177  /// MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5179 
5180  /// Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5182 
5183  /// TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5185 
5186  /// anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.
5188 
5189  /// family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.
5191 
5192  /// group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.
5194 
5195  /// sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.
5197 
5198  /// spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.
5200 
5201  /// sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.
5203 
5204  /// spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.
5206 
5207  /// sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.
5209 
5210  /// spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.
5212 
5213  /// protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
5215 
5216  /// ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
5218 
5219  /// ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file.
5221 
5222  /// ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
5224 
5225  /// ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
5227 
5228  /// ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
5230 
5231  /// ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
5233 
5234  /// ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
5236 
5237  /// ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
5239 
5240  /// ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.
5242 
5243  /// ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
5245 
5246  /// ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
5248 
5249  /// ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).
5251 
5252  /// ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
5254 
5255  /// ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).
5257 
5258  /// ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.
5260 
5261  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.
5263 
5264  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.
5266 
5267  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.
5269 
5270  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.
5272 
5273  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.
5275 
5276  /// ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
5278 
5279  /// ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.
5281 
5282  /// ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.
5284 
5285  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.
5287 
5288  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.
5290 
5291  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.
5293 
5294  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.
5296 
5297  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS2 input spectra are removed.
5299 
5300  /// ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.
5302 
5303  /// ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.
5305 
5306  /// ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.
5308 
5309  /// ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.
5311 
5312  /// ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.
5314 
5315  /// ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5317 
5318  /// ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.
5320 
5321  /// ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5323 
5324  /// ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.
5326 
5327  /// ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).
5329 
5330  /// ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.
5332 
5333  /// ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
5335 
5336  /// ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
5338 
5339  /// ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
5341 
5342  /// ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.
5344 
5345  /// ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).
5347 
5348  /// ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.
5350 
5351  /// ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.
5353 
5354  /// ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
5356 
5357  /// ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.
5359 
5360  /// ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
5362 
5363  /// ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.
5365 
5366  /// ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
5368 
5369  /// ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
5371 
5372  /// ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.
5374 
5375  /// ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
5377 
5378  /// ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.
5380 
5381  /// Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
5383 
5384  /// ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.
5386 
5387  /// ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.
5389 
5390  /// ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.
5392 
5393  /// ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.
5395 
5396  /// ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
5398 
5399  /// ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.
5401 
5402  /// ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.
5404 
5405  /// ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.
5407 
5408  /// ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.
5410 
5411  /// ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
5413 
5414  /// Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
5416 
5417  /// ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.
5419 
5420  /// ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.
5422 
5423  /// ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.
5425 
5426  /// ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.
5428 
5429  /// ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.
5431 
5432  /// ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.
5434 
5435  /// ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.
5437 
5438  /// ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
5440 
5441  /// ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.
5443 
5444  /// ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.
5446 
5447  /// ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.
5449 
5450  /// ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.
5452 
5453  /// ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.
5455 
5456  /// ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.
5458 
5459  /// ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.
5461 
5462  /// ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
5464 
5465  /// ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.
5467 
5468  /// ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.
5470 
5471  /// ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.
5473 
5474  /// ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.
5476 
5477  /// ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.
5479 
5480  /// ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.
5482 
5483  /// ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.
5485 
5486  /// ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.
5488 
5489  /// ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.
5491 
5492  /// ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.
5494 
5495  /// ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.
5497 
5498  /// ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.
5500 
5501  /// ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.
5503 
5504  /// ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.
5506 
5507  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.
5509 
5510  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.
5512 
5513  /// ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.
5515 
5516  /// ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).
5518 
5519  /// ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.
5521 
5522  /// ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.
5524 
5525  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.
5527 
5528  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.
5530 
5531  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.
5533 
5534  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.
5536 
5537  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.
5539 
5540  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.
5542 
5543  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.
5545 
5546  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.
5548 
5549  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.
5551 
5552  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.
5554 
5555  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.
5557 
5558  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.
5560 
5561  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.
5563 
5564  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.
5566 
5567  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.
5569 
5570  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.
5572 
5573  /// ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter.
5575 
5576  /// ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter.
5578 
5579  /// ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter.
5581 
5582  /// ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter.
5584 
5585  /// ProteomeDiscoverer:Static Modification for X: Static Modification for X.
5587 
5588  /// ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.
5590 
5591  /// ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.
5593 
5594  /// ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.
5596 
5597  /// ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
5599 
5600  /// ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
5602 
5603  /// ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
5605 
5606  /// ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
5608 
5609  /// ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
5611 
5612  /// ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).
5614 
5615  /// ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
5617 
5618  /// ProteomeDiscoverer:Reference Database: Full path database name.
5620 
5621  /// ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
5623 
5624  /// ProteomeDiscoverer:Source file extension: File type (if not pepXML).
5626 
5627  /// ProteomeDiscoverer:Source Files: Input pepXML files.
5629 
5630  /// ProteomeDiscoverer:Source Files old: Input pepXML files (old).
5632 
5633  /// ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
5635 
5636  /// ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
5638 
5639  /// LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
5641 
5642  /// ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
5644 
5645  /// ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
5647 
5648  /// ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
5650 
5651  /// ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
5653 
5654  /// ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
5656 
5657  /// ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
5659 
5660  /// ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
5662 
5663  /// ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
5665 
5666  /// ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
5668 
5669  /// ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.
5671 
5672  /// ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).
5674 
5675  /// ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.
5677 
5678  /// contact phone number: Phone number of the contact person or organization.
5680 
5681  /// contact fax number: Fax number for the contact person or organization.
5683 
5684  /// contact toll-free phone number: Toll-free phone number of the contact person or organization.
5686 
5687  /// Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').
5689 
5690  /// Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').
5692 
5693  /// Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.
5695 
5696  /// ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
5697  MS_ACQUITY_UPLC = 1001761,
5698 
5699  /// ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
5701 
5702  /// ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
5704 
5705  /// ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
5707 
5708  /// ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
5710 
5711  /// nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
5713 
5714  /// nanoACQUITY UPLC System with 1D Technology: Waters LC-system nanoACQUITY UPLC System with 1D Technology.
5716 
5717  /// nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
5719 
5720  /// TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
5722 
5723  /// GCT Premier: Waters oa-ToF based GCT Premier.
5724  MS_GCT_Premier = 1001770,
5725 
5726  /// MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
5728 
5729  /// MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
5731 
5732  /// MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
5734 
5735  /// MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
5737 
5738  /// MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
5740 
5741  /// MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
5743 
5744  /// Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
5746 
5747  /// Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
5748  MS_Synapt_G2_MS = 1001778,
5749 
5750  /// Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
5752 
5753  /// Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
5755 
5756  /// Synapt HDMS: Waters oa-ToF based Synapt HDMS.
5757  MS_Synapt_HDMS = 1001781,
5758 
5759  /// Synapt MS: Waters oa-ToF based Synapt MS.
5760  MS_Synapt_MS = 1001782,
5761 
5762  /// Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
5763  MS_Xevo_G2_Q_Tof = 1001783,
5764 
5765  /// Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
5766  MS_Xevo_G2_Tof = 1001784,
5767 
5768  /// Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
5769  MS_Xevo_Q_Tof = 1001785,
5770 
5771  /// 3100: Waters quadrupole based 3100.
5772  MS_3100 = 1001786,
5773 
5774  /// Acquity SQD: Waters quadrupole based Acquity SQD.
5775  MS_Acquity_SQD = 1001787,
5776 
5777  /// Acquity TQD: Waters quadrupole based Acquity TQD.
5778  MS_Acquity_TQD = 1001788,
5779 
5780  /// Quattro micro GC: Waters (triple) quadrupole based Quattro micro GC.
5782 
5783  /// Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
5784  MS_Xevo_TQ_MS = 1001790,
5785 
5786  /// Xevo TQD: Waters quadrupole based Xevo TQD.
5787  MS_Xevo_TQD = 1001791,
5788 
5789  /// Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
5790  MS_Xevo_TQ_S = 1001792,
5791 
5792  /// Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.
5794 
5795  /// Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
5796  MS_Empower = 1001795,
5797 
5798  /// UNIFY: Waters UNIFY software for liquid chromatography and mass spectrometry acquisition.
5799  MS_UNIFY = 1001796,
5800 
5801  /// travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5803 
5804  /// TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5806 
5807  /// LECO software: LECO software for data acquisition and analysis.
5808  MS_LECO_software = 1001798,
5809 
5810  /// ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
5812 
5813  /// LECO instrument model: LECO instrument model.
5815 
5816  /// Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
5817  MS_Pegasus_HRT = 1001801,
5818 
5819  /// Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
5820  MS_Citius_HRT = 1001802,
5821 
5822  /// Pegasus: LECO GC time-of-flight mass spectrometer.
5823  MS_Pegasus = 1001803,
5824 
5825  /// TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
5826  MS_TruTOF = 1001804,
5827 
5828  /// quantification datatype: The data type of the value reported in a QuantLayer.
5830 
5831  /// quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.
5833 
5834  /// study variable attribute: Attribute describing a study variable.
5836 
5837  /// technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.
5839 
5840  /// biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample.
5842 
5843  /// experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
5845 
5846  /// experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
5848 
5849  /// experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
5851 
5852  /// experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
5854 
5855  /// generic experimental condition: The experimental condition is given in the value of this term.
5857 
5858  /// time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.
5860 
5861  /// dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.
5863 
5864  /// raw file attribute: Attribute describing a raw file.
5866 
5867  /// one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
5869 
5870  /// two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
5872 
5873  /// three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
5875 
5876  /// four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
5878 
5879  /// eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
5881 
5882  /// raw files group attribute: Attribute describing, how raw files build a raw file group.
5884 
5885  /// merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
5887 
5888  /// feature list attribute: Attribute describing a feature list.
5890 
5891  /// mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.
5893 
5894  /// mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit.
5896 
5897  /// feature attribute: Attribute describing a feature.
5899 
5900  /// SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition.
5902 
5903  /// Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
5905 
5906  /// SILACAnalyzer: Software for SILAC workflow.
5907  MS_SILACAnalyzer = 1001831,
5908 
5909  /// quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software.
5911 
5912  /// quantitation analysis summary: The overall workflow of this quantitation report.
5914 
5915  /// LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
5917 
5918  /// SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
5920 
5921  /// spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant).
5923 
5924  /// iTRAQ quantitation analysis: Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range.
5926 
5927  /// SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).
5929 
5930  /// metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).
5932 
5933  /// LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
5935 
5936  /// LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
5938 
5939  /// sequence-level spectral count: The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting.
5941 
5942  /// MS1 feature maximum intensity: Maximum intensity of MS1 feature.
5944 
5945  /// MS1 feature area: Area of MS1 feature.
5947 
5948  /// peak area: Area of MS1 peak (e.g. SILAC, 15N).
5950 
5951  /// isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).
5953 
5954  /// reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
5956 
5957  /// simple ratio of two values: Simple ratio of two values (enumerator and denominator).
5959 
5960  /// sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.
5962 
5963  /// normalized peptide value: Normalized peptide value.
5965 
5966  /// protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.
5968 
5969  /// normalized protein value: Normalized protein value.
5971 
5972  /// max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).
5974 
5975  /// ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
5976  MS_ANOVA_p_value = 1001854,
5977 
5978  /// t-test p-value: P-value of t-Test of two groups.
5980 
5981  /// reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
5983 
5984  /// reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).
5986 
5987  /// XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
5988  MS_XIC_area = 1001858,
5989 
5990  /// normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
5992 
5993  /// protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.
5995 
5996  /// quantification data processing: Terms used to describe types of quantification data processing.
5998 
5999  /// normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).
6001 
6002  /// quantile normalization, proteins: Normalization of protein values to approach the same distribution.
6004 
6005  /// quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
6007 
6008  /// Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
6010 
6011  /// Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
6013 
6014  /// Progenesis normalization: Normalization as performed by Progenesis LC-MS.
6016 
6017  /// distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry).
6019 
6020  /// protein-level q-value: Estimation of the q-value for proteins.
6022 
6023  /// peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
6025 
6026  /// protein-level p-value: Estimation of the p-value for proteins.
6028 
6029  /// peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
6031 
6032  /// protein-level e-value: Estimation of the e-value for proteins.
6034 
6035  /// FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0.
6037 
6038  /// modification motif: The regular expression describing the sequence motif for a modification.
6040 
6041  /// modification probability: The a priori probability of a modification.
6043 
6044  /// ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.
6046 
6047  /// MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
6049 
6050  /// offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.
6052 
6053  /// in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.
6055 
6056  /// mz5 format: mz5 file format, modelled after mzML.
6057  MS_mz5_format = 1001881,
6058 
6059  /// transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.
6061 
6062  /// coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.
6064 
6065  /// signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.
6067 
6068  /// command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.
6070 
6071  /// SQID: Software for data analysis of peptides and proteins.
6072  MS_SQID = 1001886,
6073 
6074  /// SQID:score: The SQID result 'Score'.
6075  MS_SQID_score = 1001887,
6076 
6077  /// SQID:deltaScore: The SQID result 'deltaScore'.
6079 
6080  /// SQID:protein score: The SQID result 'protein score'.
6082 
6083  /// Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.
6085 
6086  /// Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.
6088 
6089  /// Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.
6091 
6092  /// Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.
6094 
6095  /// Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
6097 
6098  /// Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
6100 
6101  /// Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
6103 
6104  /// MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
6106 
6107  /// MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
6109 
6110  /// MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.
6112 
6113  /// MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
6115 
6116  /// MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
6117  MS_MaxQuant_PEP = 1001901,
6118 
6119  /// MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
6121 
6122  /// MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
6124 
6125  /// MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
6127 
6128  /// emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
6129  MS_emPAI_value = 1001905,
6130 
6131  /// APEX value: The APEX value of protein abundance, produced from the APEX software.
6132  MS_APEX_value = 1001906,
6133 
6134  /// retention time window width: The full width of a retention time window for a chromatographic peak.
6136 
6137  /// ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
6138  MS_ISQ = 1001908,
6139 
6140  /// Velos Plus: Thermo Scientific second generation Velos.
6141  MS_Velos_Plus = 1001909,
6142 
6143  /// LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
6145 
6146  /// Q Exactive: Thermo Scientific Q Exactive.
6147  MS_Q_Exactive = 1001911,
6148 
6149  /// PinPoint: Thermo Scientific PinPoint SRM analysis software.
6150  MS_PinPoint = 1001912,
6151 
6152  /// S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.
6154 
6155  /// pymzML: Python module to interface mzML Data.
6156  MS_pymzML = 1001914,
6157 
6158  /// leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
6160 
6161  /// proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
6163 
6164  /// glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6166 
6167  /// staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6169 
6170  /// Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6172 
6173  /// 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
6175 
6176  /// ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
6178 
6179  /// ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.
6181 
6182  /// Digital Object Identifier (DOI): DOI unique identifier of a publication.
6184 
6185  /// doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
6187 
6188  /// external reference keyword: Free text attribute that can enrich the information about an entity.
6190 
6191  /// journal article keyword: Keyword present in a scientific publication.
6193 
6194  /// submitter keyword: Keyword assigned by the data submitter.
6196 
6197  /// curator keyword: Keyword assigned by a data curator.
6199 
6200  /// Tranche file hash: Hash assigned by the Tranche resource to an individual file.
6202 
6203  /// Tranche project hash: Hash assigned by the Tranche resource to a whole project.
6205 
6206  /// PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
6208 
6209  /// PRIDE project URI: URI that allows the access to one project in the PRIDE database.
6211 
6212  /// source interface: The source interface.
6214 
6215  /// source interface model: The source interface model.
6217 
6218  /// source sprayer: The source sprayer.
6220 
6221  /// source sprayer type: The source sprayer type.
6223 
6224  /// source sprayer manufacturer: The source sprayer manufacturer.
6226 
6227  /// source sprayer model: The source sprayer model.
6229 
6230  /// sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
6231  MS_sample_plate = 1001937,
6232 
6233  /// sample plate type: The sample plate type.
6235 
6236  /// stainless steel plate: Stainless steel plate.
6238 
6239  /// coated glass plate: Coated glass plate.
6241 
6242  /// electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
6244 
6245  /// static supply electrospray: The sprayer is loaded with sample once.
6247 
6248  /// fed supply electrospray: The sprayer is continuously fed with sample.
6250 
6251  /// Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6253 
6254  /// CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6256 
6257  /// Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
6258  MS_Pegasus_4D = 1001945,
6259 
6260  /// PEAKS Studio: PEAKS Studio software for data analysis.
6261  MS_PEAKS_Studio = 1001946,
6262 
6263  /// PEAKS Online: PEAKS Online software for high throughput data analysis.
6264  MS_PEAKS_Online = 1001947,
6265 
6266  /// PEAKS Node: PEAKS Node software for high throughput data analysis.
6267  MS_PEAKS_Node = 1001948,
6268 
6269  /// BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
6270  MS_BSI_software = 1001949,
6271 
6272  /// PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
6274 
6275  /// PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
6277 
6278  /// ZCore:probScore: The ZCore probability score.
6280 
6281  /// source interface manufacturer: The source interface manufacturer.
6283 
6284  /// acquisition parameter: Parameters used in the mass spectrometry acquisition.
6286 
6287  /// no cleavage: No cleavage.
6288  MS_no_cleavage = 1001955,
6289 
6290  /// unspecific cleavage: Unspecific cleavage.
6292 
6293  /// (?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
6295 
6296  /// (?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
6298 
6299  /// (?<=[^E]E): Regular expression for glutamyl endopeptidase.
6300  MS_______E_E_ = 1001959,
6301 
6302  /// (?<=W): Regular expression for 2-iodobenzoate.
6303  MS_____W_ = 1001960,
6304 
6305  /// peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.
6307 
6308  /// Mascot:C13 counts: C13 peaks to use in peak detection.
6310 
6311  /// ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
6313 
6314  /// ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
6316 
6317  /// ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
6319 
6320  /// product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.
6322 
6323  /// product ion drift time: The ion drift time of an MS2 product ion.
6325 
6326  /// PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level.
6328 
6329  /// phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
6331 
6332  /// phosphoRS sequence probability: Probability that the respective isoform is correct.
6334 
6335  /// phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.
6337 
6338  /// PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
6340 
6341  /// DeBunker: DeBunker software.
6342  MS_DeBunker = 1001973,
6343 
6344  /// DeBunker:score: Score specific to DeBunker.
6346 
6347  /// delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6348  MS_delta_m_z = 1001975,
6349 
6350  /// m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6352 
6353  /// delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6354  MS_delta_M = 1001976,
6355 
6356  /// mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6358 
6359  /// MSQuant: MSQuant software.
6360  MS_MSQuant = 1001977,
6361 
6362  /// MSQuant:PTM-score: The PTM score from MSQuant software.
6364 
6365  /// MaxQuant:PTM Score: The PTM score from MaxQuant software.
6367 
6368  /// MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
6370 
6371  /// MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
6373 
6374  /// MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.
6376 
6377  /// MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).
6379 
6380  /// Ascore software: Ascore software.
6382 
6383  /// Ascore: A-score for PTM site location at the PSM-level.
6384  MS_Ascore = 1001985,
6385 
6386  /// H-Score: H-Score for peptide phosphorylation site location.
6387  MS_H_Score = 1001986,
6388 
6389  /// vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.
6391 
6392  /// crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
6394 
6395  /// fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
6397 
6398  /// overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.
6400 
6401  /// sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
6403 
6404  /// spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
6406 
6407  /// quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.
6409 
6410  /// top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.
6412 
6413  /// convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.
6415 
6416  /// median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.
6418 
6419  /// wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.
6421 
6422  /// sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.
6424 
6425  /// SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.
6427 
6428  /// area normalization: Normalization of areas below the curves.
6430 
6431  /// LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.
6432  MS_LIFT = 1002000,
6433 
6434  /// MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
6436 
6437  /// MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
6439 
6440  /// MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
6442 
6443  /// MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
6445 
6446  /// iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.
6448 
6449  /// SRM transition type: The type of the transitions, e.g. target or decoy.
6451 
6452  /// MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
6454 
6455  /// target SRM transition: A transition used to target a specific compound that may be in the sample.
6457 
6458  /// target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.
6460 
6461  /// decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6463 
6464  /// decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6466 
6467  /// isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
6469 
6470  /// TMT quantitation analysis: Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z.
6472 
6473  /// desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6475 
6476  /// DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6478 
6479  /// Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).
6481 
6482  /// collision energy ramp start: Collision energy at the start of the collision energy ramp.
6484 
6485  /// collision energy ramp end: Collision energy at the end of the collision energy ramp.
6487 
6488  /// spectral count peptide level quantitation: Spectral count peptide level quantitation.
6490 
6491  /// spectral count protein level quantitation: Spectral count protein level quantitation.
6493 
6494  /// spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
6496 
6497  /// MS1 label-based analysis: MS1 label-based analysis.
6499 
6500  /// label-free raw feature quantitation: Label-free raw feature quantitation.
6502 
6503  /// label-free peptide level quantitation: Label-free peptide level quantitation.
6505 
6506  /// label-free protein level quantitation: Label-free protein level quantitation.
6508 
6509  /// label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
6511 
6512  /// MS2 tag-based analysis: MS2 tag-based analysis.
6514 
6515  /// MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
6517 
6518  /// MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
6520 
6521  /// MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
6523 
6524  /// MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
6526 
6527  /// nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
6529 
6530  /// original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
6532 
6533  /// modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
6535 
6536  /// PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.
6538 
6539  /// PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
6541 
6542  /// contact role: Role of the contact person.
6543  MS_contact_role = 1002033,
6544 
6545  /// first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
6546  MS_first_author = 1002034,
6547 
6548  /// senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
6549  MS_senior_author = 1002035,
6550 
6551  /// co-author: One of a set of authors associated with a publication or release.
6552  MS_co_author = 1002036,
6553 
6554  /// dataset submitter: A person who submits a dataset to a repository.
6556 
6557  /// unlabeled sample: A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6559 
6560  /// light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6562 
6563  /// inlet attribute: Inlet properties that are associated with a value.
6565 
6566  /// inlet temperature: The temperature of the inlet of a mass spectrometer.
6568 
6569  /// source temperature: The temperature of the source of a mass spectrometer.
6571 
6572  /// modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.
6574 
6575  /// ProteinProspector: ProteinProspector software for data acquisition and analysis.
6577 
6578  /// ProteinProspector:score: The ProteinProspector result 'Score'.
6580 
6581  /// ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
6583 
6584  /// native source path: The original source path used for directory-based sources.
6586 
6587  /// MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
6588  MS_MS_GF = 1002047,
6589 
6590  /// MS-GF+: MS-GF+ software used to analyze the spectra.
6591  MS_MS_GF_ = 1002048,
6592 
6593  /// MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
6595 
6596  /// MS-GF:RawScore: MS-GF raw score.
6598 
6599  /// MS-GF:DeNovoScore: MS-GF de novo score.
6601 
6602  /// MS-GF:Energy: MS-GF energy score.
6603  MS_MS_GF_Energy = 1002051,
6604 
6605  /// MS-GF:SpecEValue: MS-GF spectral E-value.
6607 
6608  /// MS-GF:EValue: MS-GF E-value.
6609  MS_MS_GF_EValue = 1002053,
6610 
6611  /// MS-GF:QValue: MS-GF Q-value.
6612  MS_MS_GF_QValue = 1002054,
6613 
6614  /// MS-GF:PepQValue: MS-GF peptide-level Q-value.
6616 
6617  /// MS-GF:PEP: MS-GF posterior error probability.
6618  MS_MS_GF_PEP = 1002056,
6619 
6620  /// modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein.
6622 
6623  /// modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein.
6625 
6626  /// Microsoft Excel: Microsoft Excel (can be used for spectral counting).
6628 
6629  /// database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
6631 
6632  /// decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
6634 
6635  /// metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
6637 
6638  /// FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
6639  MS_FindPairs = 1002063,
6640 
6641  /// peptide consensus RT: Peptide consensus retention time.
6643 
6644  /// peptide consensus m/z: Peptide consensus mass/charge ratio.
6646 
6647  /// ratio calculation method: Method used to calculate the ratio.
6649 
6650  /// protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios.
6652 
6653  /// metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
6655 
6656  /// metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape.
6658 
6659  /// t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
6660  MS_t_test = 1002070,
6661 
6662  /// ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
6663  MS_ANOVA_test = 1002071,
6664 
6665  /// p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was.
6666  MS_p_value = 1002072,
6667 
6668  /// mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'.
6670 
6671  /// quantification file format: File format containing quantification results.
6673 
6674  /// mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'.
6676 
6677  /// PAnalyzer: PAnalyzer software for getting protein evidence categories.
6678  MS_PAnalyzer = 1002076,
6679 
6680  /// impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
6681  MS_impact = 1002077,
6682 
6683  /// ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter.
6685 
6686  /// ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter.
6688 
6689  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before.
6691 
6692  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
6694 
6695  /// first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column.
6697 
6698  /// second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column.
6700 
6701  /// multidimensional chromatography modulation description: Multidimensional chromatography modulation description.
6703 
6704  /// two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition.
6706 
6707  /// two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time.
6709 
6710  /// two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition.
6712 
6713  /// two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time.
6715 
6716  /// ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein.
6718 
6719  /// Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated.
6721 
6722  /// ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
6724 
6725  /// Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator.
6727 
6728  /// search engine input parameter: Search engine input parameter.
6730 
6731  /// common search engine input parameter: Search engine input parameter that is shared by more than one search engine.
6733 
6734  /// Mascot input parameter: Search engine input parameters specific to Mascot.
6736 
6737  /// SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
6739 
6740  /// Phenyx input parameter: Search engine input parameters specific to Phenyx.
6742 
6743  /// ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
6745 
6746  /// OMSSA input parameter: Search engine input parameters specific to OMSSA.
6748 
6749  /// ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
6751 
6752  /// ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
6754 
6755  /// software input parameter: Software input parameters.
6757 
6758  /// common software input parameter: Software input parameter that is shared by more than one software.
6760 
6761  /// software specific input parameter: Software specific input parameter.
6763 
6764  /// Scaffold input parameter: Search engine input parameters specific to Scaffold.
6766 
6767  /// Percolator input parameter: Search engine input parameters specific to Percolator.
6769 
6770  /// higher score better: Indicates that a higher score is better.
6772 
6773  /// lower score better: Indicates that a lower score is better.
6775 
6776  /// assay attribute: Attribute describing an assay.
6778 
6779  /// assay label attribute: Attribute describing an assay label.
6781 
6782  /// protein group list attribute: Attribute describing a protein group list.
6784 
6785  /// protein group attribute: Attribute describing a protein group.
6787 
6788  /// protein list attribute: Attribute describing a protein list.
6790 
6791  /// peptide consensus list attribute: Attribute describing a peptide consensus list.
6793 
6794  /// peptide consensus attribute: Attribute describing a peptide consensus.
6796 
6797  /// small molecule list attribute: Attribute describing a small molecule list.
6799 
6800  /// small molecule attribute: Attribute describing a small molecule.
6802 
6803  /// small molecule modification attribute: Attribute describing a small molecule modification.
6805 
6806  /// experiment name: The name for identifying an experiment.
6808 
6809  /// spectral count feature: Dummy decribing a spectral count feature.
6811 
6812  /// counts reporting: FeatureList of spectral counts.
6814 
6815  /// x-Tracker: X-Tracker generic tool for quantitative proteomics.
6816  MS_x_Tracker = 1002123,
6817 
6818  /// ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
6819  MS_ProteoSuite = 1002124,
6820 
6821  /// combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
6823 
6824  /// database UniProtKB: The name of the UniProtKB knowledgebase.
6826 
6827  /// identification file attribute: Attribute describing an identification file.
6829 
6830  /// method file format: Attribute describing a method file format.
6832 
6833  /// ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment.
6834  MS_ITRAQAnalyzer = 1002129,
6835 
6836  /// identification file format: Attribute describing an identification file format.
6838 
6839  /// TOPP noise filter: Noise filter component of the TOPP software.
6841 
6842  /// TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
6844 
6845  /// TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
6847 
6848  /// TOPP peak picker: Peak picker component of the TOPP software.
6850 
6851  /// TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
6853 
6854  /// TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra.
6856 
6857  /// TOPP spectra filter: Spectra filter component of the TOPP software.
6859 
6860  /// TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
6862 
6863  /// TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
6865 
6866  /// TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
6868 
6869  /// TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
6871 
6872  /// TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
6874 
6875  /// TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
6877 
6878  /// TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root.
6880 
6881  /// TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
6883 
6884  /// TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum.
6886 
6887  /// TOPP map aligner: Map aligner component of the TOPP software.
6889 
6890  /// TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications.
6892 
6893  /// TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach.
6895 
6896  /// TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
6898 
6899  /// numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
6901 
6902  /// denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
6904 
6905  /// protein level PSM counts: The number of spectra identified for this protein in spectral counting.
6907 
6908  /// TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
6910 
6911  /// TOPP IDMerger: Merges several protein/peptide identification files into one file.
6912  MS_TOPP_IDMerger = 1002155,
6913 
6914  /// TOPP IDFileConverter: Converts identification engine file formats.
6916 
6917  /// TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
6919 
6920  /// TOPP MzTabExporter: Exports various XML formats to an mzTab file.
6922 
6923  /// TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
6925 
6926  /// TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
6928 
6929  /// TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data.
6931 
6932  /// TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
6934 
6935  /// TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
6937 
6938  /// TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
6940 
6941  /// TOPP feature finder: Feature finder component of the TOPP software.
6943 
6944  /// TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
6946 
6947  /// TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
6949 
6950  /// TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm.
6952 
6953  /// TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
6955 
6956  /// TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
6958 
6959  /// TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
6961 
6962  /// TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
6964 
6965  /// TOPP MapRTTransformer: Applies retention time transformations to maps.
6967 
6968  /// TOPP feature linker: Feature linker component of the TOPP software.
6970 
6971  /// TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
6973 
6974  /// TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
6976 
6977  /// TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach.
6979 
6980  /// TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
6981  MS_TOPP_CompNovo = 1002178,
6982 
6983  /// TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode.
6985 
6986  /// TOPP software adaptor: Software adaptor to an external program in the TOPP software.
6988 
6989  /// TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
6991 
6992  /// TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
6994 
6995  /// TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mascot.
6997 
6998  /// TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
7000 
7001  /// TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
7003 
7004  /// TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
7006 
7007  /// TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral library.
7009 
7010  /// TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines.
7012 
7013  /// TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
7015 
7016  /// TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria.
7017  MS_TOPP_IDFilter = 1002190,
7018 
7019  /// TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
7020  MS_TOPP_IDMapper = 1002191,
7021 
7022  /// TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
7024 
7025  /// TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
7027 
7028  /// TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
7030 
7031  /// TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
7033 
7034  /// TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
7036 
7037  /// TOPP OpenSwath component: OpenSwath component of the TOPP software.
7039 
7040  /// TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
7042 
7043  /// TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
7045 
7046  /// TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
7048 
7049  /// TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
7051 
7052  /// TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space.
7054 
7055  /// TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
7057 
7058  /// TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches.
7060 
7061  /// ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats.
7063 
7064  /// ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments.
7066 
7067  /// ProteoWizard chainsaw: Filters and processes protein sequence databases.
7069 
7070  /// ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
7072 
7073  /// ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats.
7075 
7076  /// IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
7077  MS_IsobariQ = 1002210,
7078 
7079  /// Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
7081 
7082  /// IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric.
7084 
7085  /// PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7087 
7088  /// PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7090 
7091  /// PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7093 
7094  /// PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
7096 
7097  /// decoy peptide: A putative identified peptide issued from a decoy sequence database.
7098  MS_decoy_peptide = 1002217,
7099 
7100  /// percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion.
7102 
7103  /// percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion.
7105 
7106  /// MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database.
7107  MS_MRMaid = 1002220,
7108 
7109  /// MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
7111 
7112  /// SRM transition attribute: Attribute associated with a SRM transition.
7114 
7115  /// precursor ion detection probability: Probability of detecting precursor when parent protein is present.
7117 
7118  /// product ion detection probability: Probability of detecting product ion when precursor ion is present.
7120 
7121  /// average product ion intensity: Average value of product ion intensity in a collection of identified spectra.
7123 
7124  /// product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra.
7126 
7127  /// number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments.
7129 
7130  /// number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments.
7132 
7133  /// ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides.
7135 
7136  /// ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides.
7138 
7139  /// regular expressions for a GUID: ([A-Fa-f0-9]\{8\}-([A-Fa-f0-9]\{4\}-)\{3\}[A-Fa-f0-9]\{12\}).
7141 
7142  /// ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID).
7144 
7145  /// ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration.
7147 
7148  /// selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
7150 
7151  /// ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores.
7153 
7154  /// ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides.
7156 
7157  /// mzidLib: A library of Java routines for manipulating mzIdentML files.
7158  MS_mzidLib = 1002237,
7159 
7160  /// mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
7162 
7163  /// mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
7165 
7166  /// mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
7168 
7169  /// mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
7171 
7172  /// mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files.
7174 
7175  /// mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
7177 
7178  /// mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search.
7180 
7181  /// mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
7183 
7184  /// mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file.
7186 
7187  /// mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files.
7189 
7190  /// SEQUEST:spscore: The SEQUEST result 'SpScore'.
7192 
7193  /// SEQUEST:sprank: The SEQUEST result 'SpRank'.
7195 
7196  /// SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
7198 
7199  /// Comet: Comet open-source sequence search engine developed at the University of Washington.
7200  MS_Comet = 1002251,
7201 
7202  /// Comet:xcorr: The Comet result 'XCorr'.
7203  MS_Comet_xcorr = 1002252,
7204 
7205  /// Comet:deltacn: The Comet result 'DeltaCn'.
7206  MS_Comet_deltacn = 1002253,
7207 
7208  /// Comet:deltacnstar: The Comet result 'DeltaCnStar'.
7210 
7211  /// Comet:spscore: The Comet result 'SpScore'.
7212  MS_Comet_spscore = 1002255,
7213 
7214  /// Comet:sprank: The Comet result 'SpRank'.
7215  MS_Comet_sprank = 1002256,
7216 
7217  /// Comet:expectation value: The Comet result 'Expectation value'.
7219 
7220  /// Comet:matched ions: The Comet result 'Matched Ions'.
7222 
7223  /// Comet:total ions: The Comet result 'Total Ions'.
7225 
7226  /// PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
7228 
7229  /// Byonic: Byonic search engine from Protein Metrics.
7230  MS_Byonic = 1002261,
7231 
7232  /// Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct.
7233  MS_Byonic_Score = 1002262,
7234 
7235  /// Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct.
7237 
7238  /// Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct.
7240 
7241  /// Byonic:PEP: Byonic posterior error probability.
7242  MS_Byonic_PEP = 1002265,
7243 
7244  /// Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism.
7246 
7247  /// Byonic:Protein LogProb: The log p-value of the protein.
7249 
7250  /// Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
7252 
7253  /// Byonic:Best Score: Best (largest) Byonic score of a PSM.
7255 
7256  /// chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure.
7258 
7259  /// liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.
7261 
7262  /// gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas.
7264 
7265  /// detector potential: Detector potential difference in volts.
7267 
7268  /// SQ Detector 2: Waters quadrupole based SQ Detector 2.
7269  MS_SQ_Detector_2 = 1002274,
7270 
7271  /// Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
7272  MS_Xevo_G2_S_Tof = 1002275,
7273 
7274  /// Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
7276 
7277  /// AutoSpec Premier: Waters AutoSpec Premier magnetic sector instrument.
7279 
7280  /// Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
7281  MS_Pegasus_III = 1002278,
7282 
7283  /// maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7284  MS_maXis_4G = 1002279,
7285 
7286  /// compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7287  MS_compact = 1002280,
7288 
7289  /// SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
7291 
7292  /// SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
7294 
7295  /// SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
7297 
7298  /// SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
7300 
7301  /// Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7303 
7304  /// TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7306 
7307  /// Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline.
7309 
7310  /// PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format.
7312 
7313  /// iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format.
7314  MS_iProphet = 1002288,
7315 
7316  /// ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format.
7318 
7319  /// XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
7320  MS_XPRESS = 1002290,
7321 
7322  /// Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc.
7323  MS_Libra = 1002291,
7324 
7325  /// PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites.
7326  MS_PTMProphet = 1002292,
7327 
7328  /// Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
7330 
7331  /// Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
7333 
7334  /// SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
7335  MS_SCION_SQ = 1002295,
7336 
7337  /// SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
7338  MS_SCION_TQ = 1002296,
7339 
7340  /// EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
7341  MS_EVOQ_Elite = 1002297,
7342 
7343  /// EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
7344  MS_EVOQ_Qube = 1002298,
7345 
7346  /// micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7348 
7349  /// amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
7351 
7352  /// amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7353  MS_amaZon_Speed = 1002301,
7354 
7355  /// Bruker Container format: Bruker Container raw file format.
7357 
7358  /// Bruker Container nativeID format: Native identifier (UUID).
7360 
7361  /// domain range: Domain range of a numerical value.
7362  MS_domain_range = 1002304,
7363 
7364  /// value between 0 and 1 inclusive: Value range for probabilities.
7366 
7367  /// value greater than zero: Positive value range.
7369 
7370  /// fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion.
7372 
7373  /// fluorescence detector: A detector using a fluorescent signal after excitation with light.
7375 
7376  /// Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM.
7378 
7379  /// Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein.
7381 
7382  /// Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information.
7384 
7385  /// MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression.
7387 
7388  /// MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
7390 
7391  /// MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression.
7393 
7394  /// consensus result: Indicates a consensus result from several search engine runs.
7396 
7397  /// ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
7399 
7400  /// ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
7402 
7403  /// ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
7405 
7406  /// Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
7408 
7409  /// ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
7411 
7412  /// ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
7414 
7415  /// ProteomeDiscoverer:min peptide length: Minimum peptide length.
7417 
7418  /// ProteomeDiscoverer:max peptide length: Maximum peptide length.
7420 
7421  /// ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
7423 
7424  /// ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications.
7426 
7427  /// ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
7429 
7430  /// ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM.
7432 
7433  /// ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
7435 
7436  /// ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
7438 
7439  /// ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter.
7441 
7442  /// ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter.
7444 
7445  /// lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group.
7446  MS_lab_head = 1002332,
7447 
7448  /// conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process.
7450 
7451  /// ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML.
7452  MS_ProCon = 1002334,
7453 
7454  /// PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML.
7456 
7457  /// Amanda: Amanda scoring system for PSM identification.
7458  MS_Amanda = 1002336,
7459 
7460  /// Andromeda: Andromeda is a peptide search engine.
7461  MS_Andromeda = 1002337,
7462 
7463  /// Andromeda:score: The probability based score of the Andromeda search engine.
7465 
7466  /// site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification.
7468 
7469  /// ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project.
7471 
7472  /// second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search.
7474 
7475  /// MZmine: A framework for differential analysis of mass spectrometry data.
7476  MS_MZmine = 1002342,
7477 
7478  /// ion stability type: Stability type of the ion.
7480 
7481  /// Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers.
7482  MS_Maltcms = 1002344,
7483 
7484  /// PSM-level attribute: Attribute of a single peptide-spectrum match.
7486 
7487  /// protein group-level identification attribute: Protein group level information.
7489 
7490  /// PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.
7492 
7493  /// protein group-level identification statistic: Identification confidence metric for a protein group.
7495 
7496  /// value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
7498 
7499  /// PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
7501 
7502  /// PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
7504 
7505  /// PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
7507 
7508  /// PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
7510 
7511  /// PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
7513 
7514  /// PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
7516 
7517  /// PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7519 
7520  /// PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.
7522 
7523  /// search engine specific peptide sequence-level identification statistic: Search engine specific distinct peptide score.
7525 
7526  /// peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7528 
7529  /// distinct peptide-level FDRScore: MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7531 
7532  /// distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.
7534 
7535  /// peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.
7537 
7538  /// search engine specific score for proteins: Search engine specific protein scores.
7540 
7541  /// protein-level local FDR: Estimation of the local false discovery rate of proteins.
7543 
7544  /// FDRScore for proteins: MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7546 
7547  /// combined FDRScore for proteins: MzidLibrary Combined FDRScore for proteins.
7549 
7550  /// probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7552 
7553  /// search engine specific score for protein groups: Search engine specific protein group scores.
7555 
7556  /// protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
7558 
7559  /// protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
7561 
7562  /// protein group-level p-value: Estimation of the p-value for protein groups.
7564 
7565  /// protein group-level e-value: Estimation of the e-value for protein groups.
7567 
7568  /// protein group-level q-value: Estimation of the q-value for protein groups.
7570 
7571  /// protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
7573 
7574  /// protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7576 
7577  /// protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7579 
7580  /// ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
7582 
7583  /// ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
7585 
7586  /// ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein.
7588 
7589  /// false localization rate: Estimation of the false localization rate for modification site assignment.
7591 
7592  /// MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
7594 
7595  /// Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
7597 
7598  /// SCiLS software: SCiLS software for data acquisition and analysis.
7600 
7601  /// SCiLS Lab: SCiLS Lab software.
7602  MS_SCiLS_Lab = 1002384,
7603 
7604  /// SCiLS Lab format: SCiLS Lab file format.
7606 
7607  /// preprocessing software: Preprocessing software.
7609 
7610  /// PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
7611  MS_PIA = 1002387,
7612 
7613  /// PIA XML format: A compilation of search engine results in the PIA XML format.
7615 
7616  /// PIA workflow parameter: A parameter set for a single PIA analysis.
7618 
7619  /// PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
7621 
7622  /// PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation.
7624 
7625  /// PIA:PSM sets created: Indicates whether PSM sets were created.
7627 
7628  /// PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all.
7630 
7631  /// PIA:protein score: The score given to a protein by any protein inference.
7633 
7634  /// PIA:protein inference: The used algorithm for the protein inference using PIA.
7636 
7637  /// PIA:protein inference filter: A filter used by PIA for the protein inference.
7639 
7640  /// PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
7642 
7643  /// PIA:protein inference used score: The used base score for the protein inference using PIA.
7645 
7646  /// PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference.
7648 
7649  /// PIA:filter: A filter used for the report generation.
7650  MS_PIA_filter = 1002400,
7651 
7652  /// leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members.
7654 
7655  /// non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence.
7657 
7658  /// group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative.
7660 
7661  /// count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file.
7663 
7664  /// protein group-level result list attribute: Details describing a protein cluster.
7666 
7667  /// count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7669 
7670  /// cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides.
7672 
7673  /// number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7675 
7676  /// marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group.
7678 
7679  /// Anubis: Anubis software for selected reaction monitoring data.
7680  MS_Anubis = 1002410,
7681 
7682  /// TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'.
7683  MS_TraML_format = 1002411,
7684 
7685  /// total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM).
7687 
7688  /// product background: The background area for the quantified transition.
7690 
7691  /// postprocessing software: Postprocessing software.
7693 
7694  /// protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file.
7696 
7697  /// Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
7699 
7700  /// Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
7702 
7703  /// TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
7704  MS_TSQ_Quantiva = 1002418,
7705 
7706  /// TSQ Endura: Thermo Scientific TSQ Endura MS.
7707  MS_TSQ_Endura = 1002419,
7708 
7709  /// PASSEL experiment URI: URI that allows access to a PASSEL experiment.
7711 
7712  /// Paragon input parameter: Search engine input parameters specific to Paragon.
7714 
7715  /// Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation.
7717 
7718  /// Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation.
7720 
7721  /// Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument.
7723 
7724  /// Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search.
7726 
7727  /// Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions.
7729 
7730  /// Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
7732 
7733  /// Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted.
7735 
7736  /// Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples.
7738 
7739  /// Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity.
7741 
7742  /// Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios.
7744 
7745  /// search engine specific input metadata: Search engine specific metadata that are not user-controlled settings.
7747 
7748  /// Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result.
7750 
7751  /// number of spectra searched: Number of spectra in a search.
7753 
7754  /// data processing start time: The time that a data processing action was started.
7756 
7757  /// Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done.
7759 
7760  /// number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used.
7762 
7763  /// spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList).
7765 
7766  /// final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult.
7768 
7769  /// intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult.
7771 
7772  /// Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
7774 
7775  /// chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
7777 
7778  /// Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
7780 
7781  /// 6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
7783 
7784  /// 6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity.
7786 
7787  /// 6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity.
7789 
7790  /// Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects.
7792 
7793  /// PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
7795 
7796  /// PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
7798 
7799  /// param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
7801 
7802  /// param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
7804 
7805  /// Maui: The Maltcms Graphical User Interface.
7806  MS_Maui = 1002452,
7807 
7808  /// No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported.
7810 
7811  /// No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported.
7813 
7814  /// H2O neutral loss: Neutral loss of water.
7816 
7817  /// NH3 neutral loss: Neutral loss of ammonia.
7819 
7820  /// H3PO4 neutral loss: Neutral loss of phosphoric acid.
7822 
7823  /// PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results.
7824  MS_PeptideShaker = 1002458,
7825 
7826  /// MS Amanda csv format: MS Amanda csv output format.
7828 
7829  /// protein group-level global FNR: Estimation of the global false negative rate of protein groups.
7831 
7832  /// protein group-level confidence: Estimation of the global confidence of protein groups.
7834 
7835  /// peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7837 
7838  /// peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7840 
7841  /// PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
7843 
7844  /// PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
7846 
7847  /// PeptideShaker PSM score: The probability based PeptideShaker PSM score.
7849 
7850  /// PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
7852 
7853  /// PeptideShaker peptide score: The probability based PeptideShaker peptide score.
7855 
7856  /// PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
7858 
7859  /// PeptideShaker protein group score: The probability based PeptideShaker protein group score.
7861 
7862  /// PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
7864 
7865  /// trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell.
7867 
7868  /// ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.
7870 
7871  /// ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group.
7873 
7874  /// ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group.
7876 
7877  /// ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated.
7879 
7880  /// mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.
7882 
7883  /// mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.
7885 
7886  /// regular expression: Regular expression.
7888 
7889  /// regular expression for a digital object identifier (DOI): (10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?![\"&\'<>])[^ \t\\r\n\\v\\f])+).
7891 
7892  /// higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
7894 
7895  /// statistical threshold: Estimated statistical threshold.
7897 
7898  /// PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
7900 
7901  /// peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
7903 
7904  /// protein-level statistical threshold: Estimated statistical threshold at protein-level.
7906 
7907  /// protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
7909 
7910  /// MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7912 
7913  /// MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7915 
7916  /// special processing: Details describing a special processing.
7918 
7919  /// peptide-level scoring: Peptide-level scoring performed.
7921 
7922  /// modification localization scoring: Modification localization scoring performed.
7924 
7925  /// consensus scoring: Consensus multiple search engine approach performed.
7927 
7928  /// sample pre-fractionation: Sample pre-fractionation performed.
7930 
7931  /// cross-linking search: Cross-linking search performed.
7933 
7934  /// no special processing: No special processing performed.
7936 
7937  /// group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
7939 
7940  /// group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account.
7942 
7943  /// group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account.
7945 
7946  /// peptide level score: Peptide level score.
7948 
7949  /// peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file.
7951 
7952  /// no PSM threshold: Indicating that no PSM threshold was used.
7954 
7955  /// no peptide-level threshold: Indicating that no peptide-level threshold was used.
7957 
7958  /// PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
7960 
7961  /// modification index: The order of modifications to be referenced elsewhere in the document.
7963 
7964  /// regular expression for modification localization scoring: ([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\}).
7966 
7967  /// modification position score: Modification position score.
7969 
7970  /// modification rescoring:false localization rate: Mod position score: false localization rate.
7972 
7973  /// cross-linking attribute: Cross-linking attribute.
7975 
7976  /// cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7978 
7979  /// cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7981 
7982  /// cross-link spectrum identification item: Cross-linked spectrum identification item.
7984 
7985  /// cross-linking score: Cross-linking scoring value.
7987 
7988  /// molecules per cell: The absolute abundance of protein in a cell.
7990 
7991  /// absolute quantitation analysis: Absolute quantitation analysis.
7993 
7994  /// internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis.
7996 
7997  /// internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis.
7999 
8000  /// internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis.
8002 
8003  /// Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS.
8005 
8006  /// Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS.
8008 
8009  /// peptide group ID: Peptide group identifier for peptide-level stats.
8011 
8012  /// mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position.
8014 
8015  /// ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational modifications (PTMs).
8017 
8018  /// Q Exactive HF: Thermo Scientific Q Exactive.
8019  MS_Q_Exactive_HF = 1002523,
8020 
8021  /// PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
8022  MS_PepFinder = 1002524,
8023 
8024  /// TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
8025  MS_TSQ_8000_Evo = 1002525,
8026 
8027  /// Exactive Plus: Thermo Scientific Exactive Plus MS.
8028  MS_Exactive_Plus = 1002526,
8029 
8030  /// instrument specific scan attribute: Instrument specific scan properties that are associated with a value.
8032 
8033  /// synchronous prefilter selection: Synchronous prefilter selection.
8035 
8036  /// SPS (synchronous prefilter selection): Synchronous prefilter selection.
8038 
8039  /// resolution array: A data array of resolution values.
8041 
8042  /// baseline array: A data array of signal baseline values (the signal in the absence of analytes).
8044 
8045  /// UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data.
8046  MS_UIMF_format = 1002531,
8047 
8048  /// UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger.
8050 
8051  /// TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
8053 
8054  /// ProLuCID:xcorr: The ProLuCID result 'XCorr'.
8056 
8057  /// ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.
8059 
8060  /// D-Score: D-Score for PTM site location at the PSM-level.
8061  MS_D_Score = 1002536,
8062 
8063  /// MD-Score: MD-Score for PTM site location at the PSM-level.
8064  MS_MD_Score = 1002537,
8065 
8066  /// PTM localization confidence metric: Localization confidence metric for a post translational modification (PTM).
8068 
8069  /// PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizations.
8071 
8072  /// PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.
8074 
8075  /// PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide identifications.
8077 
8078  /// PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein identifications.
8080 
8081  /// xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
8082  MS_xiFDR = 1002543,
8083 
8084  /// xi: Search engine for cross-linked peptides.
8085  MS_xi = 1002544,
8086 
8087  /// xi:score: The xi result 'Score'.
8088  MS_xi_score = 1002545,
8089 
8090  /// Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
8092 
8093  /// normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
8095 
8096  /// distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor (dNSAF).
8098 
8099  /// PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence.
8101 
8102  /// peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
8104 
8105  /// peptide:Ascore: A-score for PTM site location at the peptide-level.
8107 
8108  /// peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
8110 
8111  /// peptide:D-Score: D-Score for PTM site location at the peptide-level.
8113 
8114  /// peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
8116 
8117  /// PTM localization score threshold: Threshold for PTM site location score.
8119 
8120  /// Ascore threshold: Threshold for Ascore PTM site location score.
8122 
8123  /// D-Score threshold: Threshold for D-score PTM site location score.
8125 
8126  /// MD-Score threshold: Threshold for MD-score PTM site location score.
8128 
8129  /// H-Score threshold: Threshold for H-score PTM site location score.
8131 
8132  /// DeBunker:score threshold: Threshold for DeBunker PTM site location score.
8134 
8135  /// Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.
8137 
8138  /// MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
8140 
8141  /// MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
8143 
8144  /// MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probability.
8146 
8147  /// MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
8149 
8150  /// MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.
8152 
8153  /// phosphoRS score threshold: Threshold for phosphoRS score.
8155 
8156  /// phosphoRS site probability threshold: Threshold for phosphoRS site probability.
8158 
8159  /// ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a ProteomeDiscoverer search.
8161 
8162  /// sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group.
8164 
8165  /// spectrum multiply subsumable protein: A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group.
8167 
8168  /// protein detection statistical threshold: Estimated statistical threshold used for protein detection.
8170 
8171  /// spectrum identification statistical threshold: Estimated statistical threshold used for spectrum identification.
8173 
8174  /// ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
8175  MS_ASAPRatio = 1002574,
8176 
8177  /// Tide: Tide open-source sequence search program developed at the University of Washington.
8178  MS_Tide = 1002575,
8179 
8180  /// Andromeda result format: Andromeda result file output format.
8182 
8183  /// 2000 QTRAP: SCIEX 2000 QTRAP.
8184  MS_2000_QTRAP = 1002577,
8185 
8186  /// 2500 QTRAP: SCIEX 2500 QTRAP.
8187  MS_2500_QTRAP = 1002578,
8188 
8189  /// 3500 QTRAP: SCIEX 3500 QTRAP.
8190  MS_3500_QTRAP = 1002579,
8191 
8192  /// QTRAP 4500: SCIEX QTRAP 4500.
8193  MS_QTRAP_4500 = 1002580,
8194 
8195  /// QTRAP 6500: SCIEX QTRAP 6500.
8196  MS_QTRAP_6500 = 1002581,
8197 
8198  /// QTRAP 6500+: SCIEX QTRAP 6500+.
8199  MS_QTRAP_6500_ = 1002582,
8200 
8201  /// TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
8203 
8204  /// TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
8206 
8207  /// API 100: Applied Biosystems/MDS SCIEX API 100 MS.
8208  MS_API_100 = 1002585,
8209 
8210  /// API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
8211  MS_API_100LC = 1002586,
8212 
8213  /// API 165: Applied Biosystems/MDS SCIEX API 165 MS.
8214  MS_API_165 = 1002587,
8215 
8216  /// API 300: Applied Biosystems/MDS SCIEX API 300 MS.
8217  MS_API_300 = 1002588,
8218 
8219  /// API 350: Applied Biosystems/MDS SCIEX API 350 MS.
8220  MS_API_350 = 1002589,
8221 
8222  /// API 365: Applied Biosystems/MDS SCIEX API 365 MS.
8223  MS_API_365 = 1002590,
8224 
8225  /// Triple Quad 3500: SCIEX Triple Quad 3500.
8227 
8228  /// Triple Quad 4500: SCIEX Triple Quad 4500.
8230 
8231  /// Triple Quad 5500: SCIEX Triple Quad 5500.
8233 
8234  /// Triple Quad 6500: SCIEX Triple Quad 6500.
8236 
8237  /// Triple Quad 6500+: SCIEX Triple Quad 6500+.
8239 
8240  /// ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute.
8241  MS_ProLuCID = 1002596,
8242 
8243  /// MS1 format: MS1 file format for MS1 spectral data.
8244  MS_MS1_format = 1002597,
8245 
8246  /// DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches.
8247  MS_DTASelect = 1002598,
8248 
8249  /// splash key: Spectral Hash key, an unique identifier for spectra.
8250  MS_splash_key = 1002599,
8251 
8252  /// PRIDE XML: Internal data and submission format of the PRIDE database.
8253  MS_PRIDE_XML = 1002600,
8254 
8255  /// mzTab: Tabular result format for proteomics and metabolomics experiments.
8256  MS_mzTab = 1002601,
8257 
8258  /// quantification reagent: Reagent used in labeled quantification methods.
8260 
8261  /// ICAT reagent: Isotope coded affinity tag reagent.
8262  MS_ICAT_reagent = 1002603,
8263 
8264  /// ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
8266 
8267  /// ICAT light reagent: The name of the sample labelled with the light ICAT label.
8269 
8270  /// ICPL reagent: Isotope coded protein labeling reagent.
8271  MS_ICPL_reagent = 1002606,
8272 
8273  /// ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
8275 
8276  /// ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
8278 
8279  /// ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
8281 
8282  /// ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
8284 
8285  /// SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
8286  MS_SILAC_reagent = 1002611,
8287 
8288  /// SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
8290 
8291  /// SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
8293 
8294  /// SILAC light reagent: The name of the sample labelled with the light SILAC label.
8296 
8297  /// TMT reagent: Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling.
8298  MS_TMT_reagent = 1002615,
8299 
8300  /// TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
8302 
8303  /// TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
8305 
8306  /// TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
8308 
8309  /// TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
8311 
8312  /// TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
8314 
8315  /// TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
8317 
8318  /// iTRAQ reagent: Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent.
8319  MS_iTRAQ_reagent = 1002622,
8320 
8321  /// iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
8323 
8324  /// iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
8326 
8327  /// iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
8329 
8330  /// iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
8332 
8333  /// iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
8335 
8336  /// iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
8338 
8339  /// iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
8341 
8342  /// iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
8344 
8345  /// Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8347 
8348  /// EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8350 
8351  /// jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8353 
8354  /// jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8356 
8357  /// Q Exactive Plus: Thermo Scientific Q Exactive Plus.
8359 
8360  /// proteogenomics search: Proteogenomics search performed.
8362 
8363  /// proteogenomics attribute: Proteogenomics attribute.
8365 
8366  /// chromosome name: The name or number of the chromosome to which a given peptide has been mapped.
8368 
8369  /// chromosome strand: The strand (+ or -) to which the peptide has been mapped.
8371 
8372  /// peptide start on chromosome: The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system.
8374 
8375  /// peptide end on chromosome: The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system.
8377 
8378  /// peptide exon count: The number of exons to which the peptide has been mapped.
8380 
8381  /// peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length.
8383 
8384  /// peptide start positions on chromosome: A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome.
8386 
8387  /// genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference.
8389 
8390  /// MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data.
8391  MS_MSDK = 1002645,
8392 
8393  /// native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8395 
8396  /// nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8398 
8399  /// Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combined prior to searching or interpretation.
8401 
8402  /// Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combined prior to searching or interpretation.
8404 
8405  /// WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined prior to searching or interpretation.
8407 
8408  /// Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation.
8410 
8411  /// Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation.
8413 
8414  /// Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation.
8416 
8417  /// multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8419 
8420  /// single peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8422 
8423  /// scan number only nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8425 
8426  /// spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8428 
8429  /// mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8431 
8432  /// identification parameter: Identification parameter for the search engine run.
8434 
8435  /// UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
8437 
8438  /// UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
8440 
8441  /// Morpheus: Morpheus search engine.
8442  MS_Morpheus = 1002661,
8443 
8444  /// Morpheus:Morpheus score: Morpheus score for PSMs.
8446 
8447  /// Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
8449 
8450  /// interaction score derived from cross-linking: Parent term for interaction scores derived from cross-linking.
8452 
8453  /// regular expression for interaction scores derived from cross-linking: ([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\})).
8455 
8456  /// impact II: Bruker Daltonics' impact II.
8457  MS_impact_II = 1002666,
8458 
8459  /// impact HD: Bruker Daltonics' impact HD.
8460  MS_impact_HD = 1002667,
8461 
8462  /// frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114.
8464 
8465  /// frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113.
8467 
8468  /// frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N.
8470 
8471  /// frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C.
8473 
8474  /// no modification threshold: No statistical threshold for accepting or rejecting that a modification position.
8476 
8477  /// OpenXQuest: Cross-Linking MS search engine.
8478  MS_OpenXQuest = 1002673,
8479 
8480  /// X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
8481  MS_X500R_QTOF = 1002674,
8482 
8483  /// cross-linking result details: This subsection describes terms which can describe details of cross-linking results.
8485 
8486  /// protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.
8488 
8489  /// residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.
8491 
8492  /// supplemental beam-type collision-induced dissociation: A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation.
8494 
8495  /// supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisional excitation.
8497 
8498  /// supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion.
8500 
8501  /// OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.
8503 
8504  /// OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.
8506 
8507  /// OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.
8509 
8510  /// OpenXQuest:match-odds: OpenXQuest's match-odds subscore.
8512 
8513  /// OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.
8515 
8516  /// OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.
8518 
8519  /// analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.
8521 
8522  /// PTM localization attribute: Statistic derived from a post-translational modification localization analysis.
8524 
8525  /// PTM localization single result statistic: Statistic for a single item derived from a post-translational modification localization analysis.
8527 
8528  /// PTM localization result list statistic: Statistic for all items derived from a post-translational modification localization analysis.
8530 
8531  /// global FLR: Global false localization rate for all localizations in a dataset.
8532  MS_global_FLR = 1002691,
8533 
8534  /// local FLR at threshold: Local false localization rate for the bottom item in list of localizations sorted from most to least confident.
8536 
8537  /// identification attribute: Attribute of an identification item in the result of mass spectrometry proteomics data analysis.
8539 
8540  /// single identification result attribute: Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis.
8542 
8543  /// frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
8545 
8546  /// secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion.
8548 
8549  /// protein cluster identification attribute: An attribute of the protein cluster concept as used in mzIdentML.
8551 
8552  /// result list attribute: General property of an entire result list.
8554 
8555  /// PSM-level result list attribute: General property of the list of all PSMs.
8557 
8558  /// PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
8560 
8561  /// peptide sequence-level result list attribute: General property of all peptide sequences in the list.
8563 
8564  /// peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the list.
8566 
8567  /// protein-level result list attribute: Attribute of an entire protein list.
8569 
8570  /// protein-level result list statistic: A statistical metric of an entire protein list.
8572 
8573  /// protein group-level result list statistic: Attrbiute of an entire list of protein groups.
8575 
8576  /// Pegasus BT: LECO bench-top GC time-of-flight mass spectrometer.
8577  MS_Pegasus_BT = 1002719,
8578 
8579  /// MSPathFinder: PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra.
8580  MS_MSPathFinder = 1002720,
8581 
8582  /// MSPathFinder:SpecEValue: MSPathFinder spectral E-value.
8584 
8585  /// MSPathFinder:EValue: MSPathFinder E-value.
8587 
8588  /// MSPathFinder:QValue: MSPathFinder Q-value.
8590 
8591  /// MSPathFinder:PepQValue: MSPathFinder peptide-level Q-value.
8593 
8594  /// MSPathFinder:RawScore: MSPathFinder raw score.
8596 
8597  /// SYNAPT G2-Si: Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.
8598  MS_SYNAPT_G2_Si = 1002726,
8599 
8600  /// MALDI SYNAPT G2-Si: Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.
8602 
8603  /// Vion IMS QTof: Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer.
8604  MS_Vion_IMS_QTof = 1002728,
8605 
8606  /// Xevo G2 XS Tof: Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer.
8608 
8609  /// Xevo TQ-XS: Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer.
8610  MS_Xevo_TQ_XS = 1002730,
8611 
8612  /// Xevo TQ-S micro: Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer.
8614 
8615  /// Orbitrap Fusion Lumos: Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers.
8617 
8618  /// peptide-level spectral count: The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting.
8620 
8621  /// peptide ion-level spectral count: The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting.
8623 
8624  /// feature-level quantification datatype: The data type of the value reported in a QuantLayer for a feature.
8626 
8627  /// PSM-level quantification datatype: The data type of the value reported in a QuantLayer for a PSM.
8629 
8630  /// peptide-level quantification datatype: The data type of the value reported in a QuantLayer for a peptide.
8632 
8633  /// protein-level quantification datatype: The data type of the value reported in a QuantLayer for a protein.
8635 
8636  /// protein group-level quantification datatype: The data type of the value reported in a QuantLayer for a protein group.
8638 
8639  /// unmapped peptide: Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location.
8641 
8642  /// unmapped protein: Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location.
8644 
8645  /// noise array: A data array of noise values.
8646  MS_noise_array = 1002742,
8647 
8648  /// sampled noise m/z array: A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array).
8650 
8651  /// sampled noise intensity array: A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array).
8653 
8654  /// sampled noise baseline array: A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array).
8656 
8657  /// MS-Numpress linear prediction compression followed by zlib compression: Compression using MS-Numpress linear prediction compression and zlib.
8659 
8660  /// MS-Numpress positive integer compression followed by zlib compression: Compression using MS-Numpress positive integer compression and zlib.
8662 
8663  /// MS-Numpress short logged float compression followed by zlib compression: Compression using MS-Numpress short logged float compression and zlib.
8665 
8666  /// Mascot:IntegratedSpectralLibrarySearch: Means that Mascot has integrated the search results of database and spectral library search into a single data set.
8668 
8669  /// NIST MSPepSearch: Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches.
8671 
8672  /// NIST MSP format: MSP text format defined by the NIST.
8674 
8675  /// database type spectral library: Database containing spectra.
8677 
8678  /// value between 0 and 1000 inclusive: Value range for scores.
8680 
8681  /// MSPepSearch:score: MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum.
8683 
8684  /// combined ms-ms + spectral library search: A combined MS2 (with fragment ions) and spectral library search.
8686 
8687  /// iodoTMT quantitation analysis: Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow.
8689 
8690  /// glyco-TMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow.
8692 
8693  /// aminoxyTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow.
8695 
8696  /// hydrazideTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow.
8698 
8699  /// iTRAQH quantitation analysis: Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow.
8701 
8702  /// DiART quantitation analysis: Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow.
8704 
8705  /// DiLeu quantitation analysis: Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow.
8707 
8708  /// TMT reagent 127N: The name of the sample labelled with the TMT reagent 127N.
8710 
8711  /// TMT reagent 127C: The name of the sample labelled with the TMT reagent 127C.
8713 
8714  /// TMT reagent 128N: The name of the sample labelled with the TMT reagent 128N.
8716 
8717  /// TMT reagent 128C: The name of the sample labelled with the TMT reagent 128C.
8719 
8720  /// TMT reagent 129N: The name of the sample labelled with the TMT reagent 129N.
8722 
8723  /// TMT reagent 129C: The name of the sample labelled with the TMT reagent 129C.
8725 
8726  /// TMT reagent 130N: The name of the sample labelled with the TMT reagent 130N.
8728 
8729  /// TMT reagent 130C: The name of the sample labelled with the TMT reagent 130C.
8731 
8732  /// DiART reagent: Deuterium isobaric amine reactive tag labeling reagent.
8733  MS_DiART_reagent = 1002771,
8734 
8735  /// DiART reagent 114: The name of the sample labelled with the DiART reagent 114.
8737 
8738  /// DiART reagent 115: The name of the sample labelled with the DiART reagent 115.
8740 
8741  /// DiART reagent 116: The name of the sample labelled with the DiART reagent 116.
8743 
8744  /// DiART reagent 117: The name of the sample labelled with the DiART reagent 117.
8746 
8747  /// DiART reagent 118: The name of the sample labelled with the DiART reagent 118.
8749 
8750  /// DiART reagent 119: The name of the sample labelled with the DiART reagent 119.
8752 
8753  /// DiLeu reagent: Dimethyl leucine labeling reagent.
8754  MS_DiLeu_reagent = 1002778,
8755 
8756  /// DiLeu reagent 115: The name of the sample labelled with the DiLeu reagent 115.
8758 
8759  /// DiLeu reagent 116: The name of the sample labelled with the DiLeu reagent 116.
8761 
8762  /// DiLeu reagent 117: The name of the sample labelled with the DiLeu reagent 117.
8764 
8765  /// DiLeu reagent 118: The name of the sample labelled with the DiLeu reagent 118.
8767 
8768  /// 6550 iFunnel Q-TOF LC/MS: The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8770 
8771  /// 6550A iFunnel Q-TOF LC/MS: The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8773 
8774  /// 6520B Q-TOF LC/MS: The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8776 
8777  /// 6530A Q-TOF LC/MS: The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8779 
8780  /// 6530B Q-TOF LC/MS: The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8782 
8783  /// 6538 Q-TOF LC/MS: The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8785 
8786  /// 6540 Q-TOF LC/MS: The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8788 
8789  /// 6542 Q-TOF LC/MS: The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8791 
8792  /// 6545 Q-TOF LC/MS: The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8794 
8795  /// 6560 Q-TOF LC/MS: The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8797 
8798  /// 6570 Q-TOF LC/MS: The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8800 
8801  /// 6120B Quadrupole LC/MS: The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.
8803 
8804  /// 6150 Quadrupole LC/MS: The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.
8806 
8807  /// 6224 Time-of-Flight LC/MS: The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8809 
8810  /// 6230A Time-of-Flight LC/MS: The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8812 
8813  /// 6230B Time-of-Flight LC/MS: The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.
8815 
8816  /// 6430 Triple Quadrupole LC/MS: The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8818 
8819  /// 6495A Triple Quadrupole LC/MS: The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8821 
8822  /// 6495B Triple Quadrupole LC/MS: The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8824 
8825  /// 7000A Triple Quadrupole GC/MS: The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8827 
8828  /// 7000B Triple Quadrupole GC/MS: The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
8830 
8831  /// 7800 Quadrupole ICP-MS: The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.
8833 
8834  /// 8800 Triple Quadrupole ICP-MS: The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.
8836 
8837  /// ion: An atomic or molecular species having a net positive or negative electric charge.
8838  MS_ion = 1002806,
8839 
8840  /// positive mode adduct ion: Adduct ion with positive ionization.
8842 
8843  /// negative mode adduct ion: Adduct ion with negative ionization.
8845 
8846  /// adduct ion attribute: Attribute describing an adduct formation.
8848 
8849  /// adduct ion mass: Mass of an adduct formation specified by the given value.
8851 
8852  /// adduct ion isotope: Isotope of the matrix molecule M of an adduct formation.
8854 
8855  /// Regular expression for adduct ion formula: (\[[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}\][:digit:]{0,1}[+-]).
8857 
8858  /// adduct ion formula: Adduct formation formula specified by the given value.
8860 
8861  /// volt-second per square centimeter: An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm].
8863 
8864  /// Vs/cm^2 (volt-second per square centimeter): An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm].
8866 
8867  /// inverse reduced ion mobility: Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated.
8869 
8870  /// mean inverse reduced ion mobility array: Array of drift times or inverse reduced ion mobilities, averaged from a matrix of binned m/z and ion mobility values, corresponding to a spectrum of individual peaks encoded with an m/z array.
8872 
8873  /// Bruker TDF format: Bruker TDF raw file format.
8875 
8876  /// Bruker TDF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
8878 
8879  /// Bruker TDF nativeID format, combined spectra: Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation.
8881 
8882  /// M+H ion: M+H ion from positive ion mode (M in the property ionMass denotes the mass of the neutral molecule).
8884 
8885  /// M-H ion: M-H ion from negative ion mode (M in the property ionMass denotes the mass of the neutral molecule).
8887 
8888  /// OpenMS file format: File format developed by the OpenMS team.
8890 
8891  /// idXML: OpenMS intermediate identification format.
8892  MS_idXML = 1002823,
8893 
8894  /// featureXML: OpenMS feature file format.
8895  MS_featureXML = 1002824,
8896 
8897  /// consensusXML: OpenMS consensus map format.
8898  MS_consensusXML = 1002825,
8899 
8900  /// MetaMorpheus: MetaMorpheus search engine.
8901  MS_MetaMorpheus = 1002826,
8902 
8903  /// MetaMorpheus:score: MetaMorpheus score for PSMs.
8905 
8906  /// MetaMorpheus:protein score: MetaMorpheus score for protein groups.
8908 
8909  /// XCMS:into: Feature intensity produced by XCMS findPeaks() from integrated peak intensity.
8910  MS_XCMS_into = 1002829,
8911 
8912  /// XCMS:intf: Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity.
8913  MS_XCMS_intf = 1002830,
8914 
8915  /// XCMS:maxo: Feature intensity produced by XCMS findPeaks() from maximum peak intensity.
8916  MS_XCMS_maxo = 1002831,
8917 
8918  /// XCMS:area: Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate.
8919  MS_XCMS_area = 1002832,
8920 
8921  /// alternating polarity mode: Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired.
8923 
8924  /// ProteomeDiscoverer:Delta Score: The Delta Score reported by Proteome Discoverer version 2.
8926 
8927  /// LTQ Orbitrap Classic: Thermo Fisher Scientific LTQ Orbitrap Classic.
8929 
8930  /// iProX dataset identifier: Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8932 
8933  /// iProX dataset URI: URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8935 
8936  /// mzMLb format: mzMLb file format, mzML encapsulated within HDF5.
8937  MS_mzMLb_format = 1002838,
8938 
8939  /// Conversion to mzMLb: Conversion of a file format to Proteomics Standards Initiative mzMLb file format.
8941 
8942  /// external reference data: Data belonging to an external reference.
8944 
8945  /// external HDF5 dataset: The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the <binary> section of the BinaryDataArray.
8947 
8948  /// external offset: The position in the external data where the array begins.
8950 
8951  /// external array length: Describes how many fields an array contains.
8953 
8954  /// Experiment additional parameter: Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam.
8956 
8957  /// Associated file URI: URI of one external file associated to the PRIDE experiment (maybe through a PX submission).
8959 
8960  /// Associated raw file URI: URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission).
8962 
8963  /// ProteomeCentral dataset URI: URI associated to one PX submission in ProteomeCentral.
8965 
8966  /// Result file URI: URI of one file labeled as 'Result', associated to one PX submission.
8968 
8969  /// Search engine output file URI: URI of one search engine output file associated to one PX submission.
8971 
8972  /// Peak list file URI: URI of one of one search engine output file associated to one PX submission.
8974 
8975  /// Other type file URI: URI of one file labeled as 'Other', associated to one PX submission.
8977 
8978  /// Dataset FTP location: FTP location of one entire PX data set.
8980 
8981  /// Dataset with no associated published manuscript: A dataset which does not have an associated published manuscript.
8983 
8984  /// Peer-reviewed dataset: Dataset has been peer-reviewed somehow.
8986 
8987  /// Non peer-reviewed dataset: Dataset that has not been peer-reviewed by any means.
8989 
8990  /// Supported dataset by repository: The PX dataset is supported by and is available through the submission repository.
8992 
8993  /// Unsupported dataset by repository: The PX dataset is not fully supported by the submission repository.
8995 
8996  /// Dataset with its publication pending: A dataset which has an associated manuscript pending for publication.
8998 
8999  /// Additional associated raw file URI: Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE.
9001 
9002  /// Gel image file URI: URI of one gel image file associated to one PX submission.
9004 
9005  /// Reprocessed complete dataset: All the raw files included in the original dataset (or group of original datasets) have been reanalysed.
9007 
9008  /// Reprocessed subset dataset: A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed.
9010 
9011  /// Data derived from previous dataset: One dataset is a reanalysis of previously published data.
9013 
9014  /// No PTMs are included in the dataset: No post-translational-modifications are been included in the identified peptides of one dataset.
9016 
9017  /// Accepted manuscript: A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet.
9019 
9020  /// Reference: Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet.
9021  MS_Reference = 1002866,
9022 
9023  /// Experimental information has been refined since this experiment was originally made publicly available: This means that the experimental information available has been improved, for instance precursor charges were added.
9025 
9026  /// Original data: One dataset is not a reanalysis of previously published data.
9027  MS_Original_data = 1002868,
9028 
9029  /// mzR: Bioconductor package mzR for reading and writing mass spectrometry data files.
9030  MS_mzR = 1002869,
9031 
9032  /// MSnbase: Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.
9033  MS_MSnbase = 1002870,
9034 
9035  /// CAMERA: Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.
9036  MS_CAMERA = 1002871,
9037 
9038  /// Panorama Public dataset identifier: Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
9040 
9041  /// Panorama Public dataset URI: URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
9043 
9044  /// TSQ Altis: Thermo Scientific TSQ Altis Triple Quadrupole MS.
9045  MS_TSQ_Altis = 1002874,
9046 
9047  /// TSQ Quantis: Thermo Scientific TSQ Quantis Triple Quadrupole MS.
9048  MS_TSQ_Quantis = 1002875,
9049 
9050  /// TSQ 9000: Thermo Scientific TSQ 9000 Triple Quadrupole MS.
9051  MS_TSQ_9000 = 1002876,
9052 
9053  /// Q Exactive HF-X: Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS.
9055 
9056  /// small molecule analysis software: Software for the analysis of small molecules.
9058 
9059  /// Progenesis QI: Metabolomics analysis software for LC-MS data from Nonlinear Dynamics.
9060  MS_Progenesis_QI = 1002879,
9061 
9062  /// Compound Discoverer: Metabolomics analysis software from Thermo Fisher Scientific.
9064 
9065  /// MyCompoundID: Metabolite identification tool MyCompoundID.
9066  MS_MyCompoundID = 1002881,
9067 
9068  /// study variable average function: Function used to calculate the study variable quantification value.
9070 
9071  /// median: Median function.
9072  MS_median = 1002883,
9073 
9074  /// study variable variation function: Function used to calculate the study variable quantification variation value.
9076 
9077  /// standard error: Standard error function.
9079 
9080  /// small molecule quantification datatype: The value reported in a small molecule quantification.
9082 
9083  /// Progenesis QI normalised abundance: The normalised abundance produced by Progenesis QI LC-MS.
9085 
9086  /// small molecule confidence measure: The confidence score produced by a small molecule analysis software.
9088 
9089  /// Progenesis MetaScope score: The confidence score produced by Progenesis QI.
9091 
9092  /// fragmentation score: The fragmentation confidence score.
9094 
9095  /// isotopic fit score: The isotopic fit confidence score.
9097 
9098  /// ion mobility attribute: An attribute describing ion mobility searches.
9100 
9101  /// ion mobility array: An array of ion mobility data.
9103 
9104  /// InChIKey: Unique chemical structure identifier for chemical compounds.
9105  MS_InChIKey = 1002894,
9106 
9107  /// small molecule identification attribute: Compound identification information.
9109 
9110  /// compound identification confidence level: Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'.
9112 
9113  /// isotopomer peak: Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'.
9115 
9116  /// Shimadzu Biotech QTOF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
9118 
9119  /// msalign format: msalign file format.
9121 
9122  /// feature format: TopFD feature file format.
9124 
9125  /// TopPIC: TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization.
9126  MS_TopPIC = 1002901,
9127 
9128  /// TopFD: Top-down mass spectral feature detection.
9129  MS_TopFD = 1002902,
9130 
9131  /// TopMG: A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.
9132  MS_TopMG = 1002903,
9133 
9134  /// proteoform-level identification attribute: Proteoform level information.
9136 
9137  /// proteoform-level identification statistic: Identification confidence metric for a proteoform.
9139 
9140  /// search engine specific score for proteoforms: Search engine specific proteoform scores.
9142 
9143  /// proteoform-level global FDR: Estimation of the global false discovery rate of proteoforms.
9145 
9146  /// proteoform-level local FDR: Estimation of the local false discovery rate of proteoforms.
9148 
9149  /// proteoform-level statistical threshold: Estimated statistical threshold at proteoform-level.
9151 
9152  /// proteoform-level global FDR threshold: Threshold for the global false discovery rate of proteoforms.
9154 
9155  /// proteoform-level local FDR threshold: Threshold for the local false discovery rate of proteoforms.
9157 
9158  /// TopPIC input parameter: Search engine input parameters specific to TopPIC.
9160 
9161  /// TopPIC:fixed modification: Fixed modifications for TopPIC searching.
9163 
9164  /// TopPIC:N-term form: N-terminal forms of proteins allowed in TopPIC searching.
9166 
9167  /// TopPIC:error tolerance: Error tolerance for precursor and fragment masses in PPM.
9169 
9170  /// TopPIC:max shift: Maximum value of the mass shift (in Dalton) of an unexpected modification.
9172 
9173  /// TopPIC:min shift: Minimum value of the mass shift (in Dalton) of an unexpected modification.
9175 
9176  /// TopPIC:shift num: Maximum number of unexpected modifications in a proteoform spectrum match.
9178 
9179  /// TopPIC:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum matches.
9181 
9182  /// TopPIC:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum matches.
9184 
9185  /// TopPIC:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform spectrum matches.
9187 
9188  /// TopPIC:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteoform spectrum matches.
9190 
9191  /// TopPIC:generating function: P-value and E-value estimation using generating function.
9193 
9194  /// TopPIC:combined spectrum number: Number of combined spectra.
9196 
9197  /// TopPIC:mod file: The text file containing the information of common PTMs.
9199 
9200  /// TopPIC:thread number: Number of threads used in TopPIC.
9202 
9203  /// TopPIC:use TopFD feature: Proteoform identification using TopFD feature file.
9205 
9206  /// TopPIC:spectral E-value: TopPIC spectrum-level E-value.
9208 
9209  /// TopPIC:spectral FDR: TopPIC spectrum-level FDR.
9211 
9212  /// TopPIC:proteoform-level FDR: TopPIC proteoform-level FDR.
9214 
9215  /// TopPIC:spectral p-value: TopPIC spectrum-level p-value.
9217 
9218  /// TopPIC:MIScore: Modification identification score.
9220 
9221  /// TopPIC:MIScore threshold: TopPIC:MIScore threshold.
9223 
9224  /// TopMG input parameter: Search engine input parameters specific to TopMG.
9226 
9227  /// TopMG:fixed modification: Fixed modifications for TopMG searching.
9229 
9230  /// TopMG:N-term form: N-terminal forms of proteins allowed in TopMG searching.
9232 
9233  /// TopMG:error tolerance: Error tolerance for precursor and fragment masses in PPM.
9235 
9236  /// TopMG:max shift: Maximum value of the mass shift (in Dalton).
9238 
9239  /// TopMG:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum matches.
9241 
9242  /// TopMG:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum matches.
9244 
9245  /// TopMG:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform spectrum matches.
9247 
9248  /// TopMG:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteoform spectrum matches.
9250 
9251  /// TopMG:mod file: The text file containing the information of common PTMs.
9253 
9254  /// TopMG:thread number: Number of threads used in TopMG.
9256 
9257  /// TopMG:use TopFD feature: Proteoform identification using TopFD feature file.
9259 
9260  /// TopMG:proteoform graph gap size: Gap size in constructing proteoform graph.
9262 
9263  /// TopMG:variable PTM number: Maximum number of variable PTMs.
9265 
9266  /// TopMG:variable PTM number in proteoform graph gap: Maximum number of variable PTMs in a proteoform graph gap.
9268 
9269  /// TopMG:use ASF-DIAGONAL: Protein filtering using ASF-DIAGONAL method.
9271 
9272  /// TopMG:spectral E-value: TopMG spectrum-level E-value.
9274 
9275  /// TopMG:spectral FDR: TopMG spectrum-level FDR.
9277 
9278  /// TopMG:proteoform-level FDR: TopMG proteoform-level FDR.
9280 
9281  /// TopMG:spectral p-value: TopMG spectrum-level p-value.
9283 
9284  /// collisional cross sectional area: Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry.
9286 
9287  /// hr-ms compound identification confidence level: Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'.
9289 
9290  /// isotopic ion MS peak: A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'.
9292 
9293  /// isotopomer MS peak: The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'.
9295 
9296  /// isotopologue MS peak: The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'.
9298 
9299  /// isomer: One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae.
9300  MS_isomer = 1002959,
9301 
9302  /// isotopomer: An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms.
9303  MS_isotopomer = 1002960,
9304 
9305  /// isotopologue: A molecular entity that differs only in isotopic composition (number of isotopic substitutions).
9306  MS_isotopologue = 1002961,
9307 
9308  /// mean: The arithmetic mean.
9309  MS_mean = 1002962,
9310 
9311  /// variation coefficient: The coefficient of variation.
9313 
9314  /// lipidomics analysis software: Lipidomics analysis software.
9316 
9317  /// Lipid Data Analyzer: Lipid Data Analyzer software for lipid quantification.
9319 
9320  /// chrom format: The Lipid Data Analyzer native chrom format.
9321  MS_chrom_format = 1002966,
9322 
9323  /// LipidHunter: Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets.
9324  MS_LipidHunter = 1002967,
9325 
9326  /// LipidXplorer: Software for consensual cross-platform lipidomics.
9327  MS_LipidXplorer = 1002968,
9328 
9329  /// LipidMatch: An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.
9330  MS_LipidMatch = 1002969,
9331 
9332  /// Greazy: Open-source software for automated phospholipid tandem mass spectrometry identification.
9333  MS_Greazy = 1002970,
9334 
9335  /// LipidBlast: LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library.
9336  MS_LipidBlast = 1002971,
9337 
9338  /// Lipid-Pro: A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms.
9339  MS_Lipid_Pro = 1002972,
9340 
9341  /// LipidFinder: A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets.
9342  MS_LipidFinder = 1002973,
9343 
9344  /// LipiDex: An integrated software package for high-confidence lipid identification.
9345  MS_LipiDex = 1002974,
9346 
9347  /// LIQUID: An-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
9348  MS_LIQUID = 1002975,
9349 
9350  /// ALEX: Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1).
9351  MS_ALEX = 1002976,
9352 
9353  /// ALEX123: Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level.
9354  MS_ALEX123 = 1002977,
9355 
9356  /// LIMSA: Software tool for the quantitative analysis of mass spectrometric lipidome data.
9357  MS_LIMSA = 1002978,
9358 
9359  /// LOBSTAHS: Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers.
9360  MS_LOBSTAHS = 1002979,
9361 
9362  /// LipidQA: Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species.
9363  MS_LipidQA = 1002980,
9364 
9365  /// Proline: The Proline software suite for mass spectrometry based proteomics.
9366  MS_Proline = 1002981,
9367 
9368  /// unimod root node: The root node of the unimod modifications ontology.
9370 
9371  /// Acetyl: Acetylation.
9372  UNIMOD_Acetyl = 200000001,
9373 
9374  /// Amidated: Amidation.
9375  UNIMOD_Amidated = 200000002,
9376 
9377  /// Biotin: Biotinylation.
9378  UNIMOD_Biotin = 200000003,
9379 
9380  /// Carbamidomethyl: Iodoacetamide derivative.
9382 
9383  /// Carbamyl: Carbamylation.
9384  UNIMOD_Carbamyl = 200000005,
9385 
9386  /// Carboxymethyl: Iodoacetic acid derivative.
9388 
9389  /// Deamidated: Deamidation.
9390  UNIMOD_Deamidated = 200000007,
9391 
9392  /// ICAT-G: Gygi ICAT(TM) d0.
9393  UNIMOD_ICAT_G = 200000008,
9394 
9395  /// ICAT-G:2H(8): Gygi ICAT(TM) d8.
9396  UNIMOD_ICAT_G_2H_8_ = 200000009,
9397 
9398  /// Met->Hse: Homoserine.
9399  UNIMOD_Met__Hse = 200000010,
9400 
9401  /// Met->Hsl: Homoserine lactone.
9402  UNIMOD_Met__Hsl = 200000011,
9403 
9404  /// ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
9405  UNIMOD_ICAT_D_2H_8_ = 200000012,
9406 
9407  /// ICAT-D: Applied Biosystems original ICAT(TM) d0.
9408  UNIMOD_ICAT_D = 200000013,
9409 
9410  /// NIPCAM: N-isopropylcarboxamidomethyl.
9411  UNIMOD_NIPCAM = 200000017,
9412 
9413  /// PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
9415 
9416  /// Phospho: Phosphorylation.
9417  UNIMOD_Phospho = 200000021,
9418 
9419  /// Dehydrated: Dehydration.
9420  UNIMOD_Dehydrated = 200000023,
9421 
9422  /// Propionamide: Acrylamide adduct.
9423  UNIMOD_Propionamide = 200000024,
9424 
9425  /// Pyridylacetyl: Pyridylacetyl.
9427 
9428  /// Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
9430 
9431  /// Glu->pyro-Glu: Pyro-glu from E.
9433 
9434  /// Gln->pyro-Glu: Pyro-glu from Q.
9436 
9437  /// SMA: N-Succinimidyl-2-morpholine acetate.
9438  UNIMOD_SMA = 200000029,
9439 
9440  /// Cation:Na: Sodium adduct.
9441  UNIMOD_Cation_Na = 200000030,
9442 
9443  /// Pyridylethyl: S-pyridylethylation.
9444  UNIMOD_Pyridylethyl = 200000031,
9445 
9446  /// Methyl: Methylation.
9447  UNIMOD_Methyl = 200000034,
9448 
9449  /// Oxidation: Oxidation or Hydroxylation.
9450  UNIMOD_Oxidation = 200000035,
9451 
9452  /// Dimethyl: Di-Methylation.
9453  UNIMOD_Dimethyl = 200000036,
9454 
9455  /// Trimethyl: Tri-Methylation.
9456  UNIMOD_Trimethyl = 200000037,
9457 
9458  /// Methylthio: Beta-methylthiolation.
9459  UNIMOD_Methylthio = 200000039,
9460 
9461  /// Sulfo: O-Sulfonation.
9462  UNIMOD_Sulfo = 200000040,
9463 
9464  /// Hex: Hexose.
9465  UNIMOD_Hex = 200000041,
9466 
9467  /// Lipoyl: Lipoyl.
9468  UNIMOD_Lipoyl = 200000042,
9469 
9470  /// HexNAc: N-Acetylhexosamine.
9471  UNIMOD_HexNAc = 200000043,
9472 
9473  /// Farnesyl: Farnesylation.
9474  UNIMOD_Farnesyl = 200000044,
9475 
9476  /// Myristoyl: Myristoylation.
9477  UNIMOD_Myristoyl = 200000045,
9478 
9479  /// PyridoxalPhosphate: Pyridoxal phosphate.
9481 
9482  /// Palmitoyl: Palmitoylation.
9483  UNIMOD_Palmitoyl = 200000047,
9484 
9485  /// GeranylGeranyl: Geranyl-geranyl.
9487 
9488  /// Phosphopantetheine: Phosphopantetheine.
9490 
9491  /// FAD: Flavin adenine dinucleotide.
9492  UNIMOD_FAD = 200000050,
9493 
9494  /// Tripalmitate: N-acyl diglyceride cysteine.
9495  UNIMOD_Tripalmitate = 200000051,
9496 
9497  /// Guanidinyl: Guanidination.
9498  UNIMOD_Guanidinyl = 200000052,
9499 
9500  /// HNE: 4-hydroxynonenal (HNE).
9501  UNIMOD_HNE = 200000053,
9502 
9503  /// Glucuronyl: Hexuronic acid.
9504  UNIMOD_Glucuronyl = 200000054,
9505 
9506  /// Glutathione: Glutathione disulfide.
9507  UNIMOD_Glutathione = 200000055,
9508 
9509  /// Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
9510  UNIMOD_Acetyl_2H_3_ = 200000056,
9511 
9512  /// Propionyl: Propionate labeling reagent light form (N-term & K).
9513  UNIMOD_Propionyl = 200000058,
9514 
9515  /// Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
9517 
9518  /// GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
9519  UNIMOD_GIST_Quat = 200000060,
9520 
9521  /// GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
9523 
9524  /// GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
9526 
9527  /// GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
9529 
9530  /// Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
9531  UNIMOD_Succinyl = 200000064,
9532 
9533  /// Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
9535 
9536  /// Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
9538 
9539  /// Iminobiotin: Iminobiotinylation.
9540  UNIMOD_Iminobiotin = 200000089,
9541 
9542  /// ESP: ESP-Tag light d0.
9543  UNIMOD_ESP = 200000090,
9544 
9545  /// ESP:2H(10): ESP-Tag heavy d10.
9546  UNIMOD_ESP_2H_10_ = 200000091,
9547 
9548  /// NHS-LC-Biotin: NHS-LC-Biotin.
9550 
9551  /// EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
9553 
9554  /// IMID: IMID d0.
9555  UNIMOD_IMID = 200000094,
9556 
9557  /// IMID:2H(4): IMID d4.
9558  UNIMOD_IMID_2H_4_ = 200000095,
9559 
9560  /// Propionamide:2H(3): Acrylamide d3.
9562 
9563  /// ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
9564  UNIMOD_ICAT_C = 200000105,
9565 
9566  /// ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
9568 
9569  /// FormylMet: Addition of N-formyl met.
9570  UNIMOD_FormylMet = 200000107,
9571 
9572  /// Nethylmaleimide: N-ethylmaleimide on cysteines.
9574 
9575  /// OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
9577 
9578  /// OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
9579  UNIMOD_OxLysBiotin = 200000113,
9580 
9581  /// OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
9583 
9584  /// OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
9585  UNIMOD_OxProBiotin = 200000115,
9586 
9587  /// OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
9588  UNIMOD_OxArgBiotin = 200000116,
9589 
9590  /// OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
9592 
9593  /// EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
9595 
9596  /// IBTP: Thio Ether Formation - BTP Adduct.
9597  UNIMOD_IBTP = 200000119,
9598 
9599  /// GG: Ubiquitinylation residue.
9600  UNIMOD_GG = 200000121,
9601 
9602  /// Formyl: Formylation.
9603  UNIMOD_Formyl = 200000122,
9604 
9605  /// ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
9606  UNIMOD_ICAT_H = 200000123,
9607 
9608  /// ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
9610 
9611  /// Xlink:DTSSP[88]: Cleaved and reduced DSP/DTSSP crosslinker.
9613 
9614  /// Fluoro: Fluorination.
9615  UNIMOD_Fluoro = 200000127,
9616 
9617  /// Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
9618  UNIMOD_Fluorescein = 200000128,
9619 
9620  /// Iodo: Iodination.
9621  UNIMOD_Iodo = 200000129,
9622 
9623  /// Diiodo: Di-Iodination.
9624  UNIMOD_Diiodo = 200000130,
9625 
9626  /// Triiodo: Tri-Iodination.
9627  UNIMOD_Triiodo = 200000131,
9628 
9629  /// Myristoleyl: (cis-delta 5)-tetradecaenoyl.
9630  UNIMOD_Myristoleyl = 200000134,
9631 
9632  /// Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
9634 
9635  /// Benzoyl: Labeling reagent light form (N-term & K).
9636  UNIMOD_Benzoyl = 200000136,
9637 
9638  /// Hex(5)HexNAc(2): N-linked glycan core.
9640 
9641  /// Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
9642  UNIMOD_Dansyl = 200000139,
9643 
9644  /// a-type-ion: ISD a-series (C-Term).
9645  UNIMOD_a_type_ion = 200000140,
9646 
9647  /// Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
9648  UNIMOD_Amidine = 200000141,
9649 
9650  /// HexNAc(1)dHex(1): HexNAc1dHex1.
9652 
9653  /// HexNAc(2): HexNAc2.
9654  UNIMOD_HexNAc_2_ = 200000143,
9655 
9656  /// Hex(3): Hex3.
9657  UNIMOD_Hex_3_ = 200000144,
9658 
9659  /// HexNAc(1)dHex(2): HexNAc1dHex2.
9661 
9662  /// Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
9664 
9665  /// HexNAc(2)dHex(1): HexNAc2dHex1.
9667 
9668  /// Hex(1)HexNAc(2): Hex1HexNAc2.
9670 
9671  /// Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
9673 
9674  /// HexNAc(2)dHex(2): HexNAc2dHex2.
9676 
9677  /// Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
9679 
9680  /// Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
9682 
9683  /// Hex(2)HexNAc(2): Hex2HexNAc2.
9685 
9686  /// Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
9688 
9689  /// Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
9691 
9692  /// Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
9694 
9695  /// Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
9697 
9698  /// Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
9700 
9701  /// Hex(3)HexNAc(2): Hex3HexNAc2.
9703 
9704  /// Hex(1)HexNAc(1)NeuAc(2): Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA.
9706 
9707  /// Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
9709 
9710  /// Delta:S(-1)Se(1): Selenium replaces sulfur.
9712 
9713  /// Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
9715 
9716  /// NBS:13C(6): Shimadzu NBS-13C.
9717  UNIMOD_NBS_13C_6_ = 200000171,
9718 
9719  /// NBS: Shimadzu NBS-12C.
9720  UNIMOD_NBS = 200000172,
9721 
9722  /// BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
9723  UNIMOD_BHT = 200000176,
9724 
9725  /// DAET: Phosphorylation to amine thiol.
9726  UNIMOD_DAET = 200000178,
9727 
9728  /// Label:13C(9): 13C(9) Silac label.
9729  UNIMOD_Label_13C_9_ = 200000184,
9730 
9731  /// Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
9733 
9734  /// HPG: Hydroxyphenylglyoxal arginine.
9735  UNIMOD_HPG = 200000186,
9736 
9737  /// 2HPG: Bis(hydroxphenylglyoxal) arginine.
9738  UNIMOD_2HPG = 200000187,
9739 
9740  /// Label:13C(6): 13C(6) Silac label.
9741  UNIMOD_Label_13C_6_ = 200000188,
9742 
9743  /// Label:18O(2): O18 label at both C-terminal oxygens.
9744  UNIMOD_Label_18O_2_ = 200000193,
9745 
9746  /// AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
9747  UNIMOD_AccQTag = 200000194,
9748 
9749  /// QAT: APTA-d0.
9750  UNIMOD_QAT = 200000195,
9751 
9752  /// QAT:2H(3): APTA d3.
9753  UNIMOD_QAT_2H_3_ = 200000196,
9754 
9755  /// EQAT: EAPTA d0.
9756  UNIMOD_EQAT = 200000197,
9757 
9758  /// EQAT:2H(5): EAPTA d5.
9759  UNIMOD_EQAT_2H_5_ = 200000198,
9760 
9761  /// Dimethyl:2H(4): DiMethyl-CHD2.
9763 
9764  /// Ethanedithiol: EDT.
9766 
9767  /// Delta:H(6)C(6)O(1): Acrolein addition +94.
9769 
9770  /// Delta:H(4)C(3)O(1): Acrolein addition +56.
9772 
9773  /// Delta:H(2)C(3): Acrolein addition +38.
9775 
9776  /// Delta:H(4)C(6): Acrolein addition +76.
9778 
9779  /// Delta:H(8)C(6)O(2): Acrolein addition +112.
9781 
9782  /// NEIAA: N-ethyl iodoacetamide-d0.
9783  UNIMOD_NEIAA = 200000211,
9784 
9785  /// NEIAA:2H(5): N-ethyl iodoacetamide-d5.
9786  UNIMOD_NEIAA_2H_5_ = 200000212,
9787 
9788  /// ADP-Ribosyl: ADP Ribose addition.
9789  UNIMOD_ADP_Ribosyl = 200000213,
9790 
9791  /// iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
9792  UNIMOD_iTRAQ4plex = 200000214,
9793 
9794  /// IGBP: Light IDBEST tag for quantitation.
9795  UNIMOD_IGBP = 200000243,
9796 
9797  /// Crotonaldehyde: Crotonaldehyde.
9799 
9800  /// Delta:H(2)C(2): Acetaldehyde +26.
9802 
9803  /// Delta:H(4)C(2): Acetaldehyde +28.
9805 
9806  /// Delta:H(4)C(3): Propionaldehyde +40.
9808 
9809  /// Label:18O(1): O18 Labeling.
9810  UNIMOD_Label_18O_1_ = 200000258,
9811 
9812  /// Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
9814 
9815  /// Thiophospho: Thiophosphorylation.
9816  UNIMOD_Thiophospho = 200000260,
9817 
9818  /// SPITC: 4-sulfophenyl isothiocyanate.
9819  UNIMOD_SPITC = 200000261,
9820 
9821  /// Label:2H(3): Trideuteration.
9822  UNIMOD_Label_2H_3_ = 200000262,
9823 
9824  /// PET: Phosphorylation to pyridyl thiol.
9825  UNIMOD_PET = 200000264,
9826 
9827  /// Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
9829 
9830  /// Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
9832 
9833  /// Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
9835 
9836  /// Cytopiloyne: Nucleophilic addtion to cytopiloyne.
9837  UNIMOD_Cytopiloyne = 200000270,
9838 
9839  /// Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
9841 
9842  /// CAF: Sulfonation of N-terminus.
9843  UNIMOD_CAF = 200000272,
9844 
9845  /// Nitrosyl: S-nitrosylation.
9846  UNIMOD_Nitrosyl = 200000275,
9847 
9848  /// AEBS: Aminoethylbenzenesulfonylation.
9849  UNIMOD_AEBS = 200000276,
9850 
9851  /// Ethanolyl: Ethanolation.
9852  UNIMOD_Ethanolyl = 200000278,
9853 
9854  /// Ethyl: Ethylation.
9855  UNIMOD_Ethyl = 200000280,
9856 
9857  /// CoenzymeA: Cysteine modified Coenzyme A.
9858  UNIMOD_CoenzymeA = 200000281,
9859 
9860  /// Methyl:2H(2): Deuterium Methylation of Lysine.
9861  UNIMOD_Methyl_2H_2_ = 200000284,
9862 
9863  /// SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
9865 
9866  /// SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
9868 
9869  /// Trp->Oxolactone: Tryptophan oxidation to oxolactone.
9871 
9872  /// Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
9874 
9875  /// Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
9876  UNIMOD_Biotin_HPDP = 200000290,
9877 
9878  /// Delta:Hg(1): Mercury Mercaptan.
9879  UNIMOD_Delta_Hg_1_ = 200000291,
9880 
9881  /// IodoU-AMP: (Iodo)-uracil MP.
9882  UNIMOD_IodoU_AMP = 200000292,
9883 
9884  /// CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
9886 
9887  /// IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
9888  UNIMOD_IED_Biotin = 200000294,
9889 
9890  /// dHex: Fucose.
9891  UNIMOD_dHex = 200000295,
9892 
9893  /// Methyl:2H(3): Deuterated methyl ester.
9894  UNIMOD_Methyl_2H_3_ = 200000298,
9895 
9896  /// Carboxy: Carboxylation.
9897  UNIMOD_Carboxy = 200000299,
9898 
9899  /// Bromobimane: Monobromobimane derivative.
9900  UNIMOD_Bromobimane = 200000301,
9901 
9902  /// Menadione: Menadione quinone derivative.
9903  UNIMOD_Menadione = 200000302,
9904 
9905  /// DeStreak: Cysteine mercaptoethanol.
9906  UNIMOD_DeStreak = 200000303,
9907 
9908  /// dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
9910 
9911  /// dHex(1)Hex(4)HexNAc(4): DHex Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) Pent Me.
9913 
9914  /// dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
9916 
9917  /// Hex(3)HexNAc(4): Biantennary (-2 galactose).
9919 
9920  /// Hex(4)HexNAc(4): Biantennary (-1 galactose).
9922 
9923  /// Hex(5)HexNAc(4): Biantennary.
9925 
9926  /// Cysteinyl: Cysteinylation.
9927  UNIMOD_Cysteinyl = 200000312,
9928 
9929  /// Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
9930  UNIMOD_Lys_loss = 200000313,
9931 
9932  /// Nmethylmaleimide: Nmethylmaleimide.
9934 
9935  /// DimethylpyrroleAdduct: 2,5-dimethypyrrole.
9937 
9938  /// Delta:H(2)C(5): MDA adduct +62.
9940 
9941  /// Delta:H(2)C(3)O(1): MDA adduct +54.
9943 
9944  /// Nethylmaleimide+water: Nethylmaleimidehydrolysis.
9946 
9947  /// Xlink:B10621: Bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine.
9948  UNIMOD_Xlink_B10621 = 200000323,
9949 
9950  /// Xlink:DTBP[87]: Cleaved and reduced DTBP crosslinker.
9952 
9953  /// FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
9954  UNIMOD_FP_Biotin = 200000325,
9955 
9956  /// Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
9958 
9959  /// Methyl:2H(3)13C(1): Monomethylation.
9961 
9962  /// Dimethyl:2H(6)13C(2): Dimethylation.
9964 
9965  /// Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
9967 
9968  /// Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
9970 
9971  /// HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
9973 
9974  /// Methylamine: Michael addition with methylamine.
9975  UNIMOD_Methylamine = 200000337,
9976 
9977  /// Bromo: Bromination.
9978  UNIMOD_Bromo = 200000340,
9979 
9980  /// Amino: Tyrosine oxidation to 2-aminotyrosine.
9981  UNIMOD_Amino = 200000342,
9982 
9983  /// Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
9985 
9986  /// Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
9987  UNIMOD_Arg__GluSA = 200000344,
9988 
9989  /// Trioxidation: Cysteine oxidation to cysteic acid.
9990  UNIMOD_Trioxidation = 200000345,
9991 
9992  /// His->Asn: His->Asn substitution.
9993  UNIMOD_His__Asn = 200000348,
9994 
9995  /// His->Asp: His->Asp substitution.
9996  UNIMOD_His__Asp = 200000349,
9997 
9998  /// Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
10000 
10001  /// Trp->Kynurenin: Tryptophan oxidation to kynurenin.
10003 
10004  /// Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
10006 
10007  /// Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
10009 
10010  /// Nitro: Oxidation to nitro.
10011  UNIMOD_Nitro = 200000354,
10012 
10013  /// probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
10015 
10016  /// Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
10018 
10019  /// Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
10021 
10022  /// Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
10024 
10025  /// Diisopropylphosphate: O-Diisopropylphosphorylation.
10027 
10028  /// Isopropylphospho: O-Isopropylphosphorylation.
10030 
10031  /// ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
10032  UNIMOD_ICPL_13C_6_ = 200000364,
10033 
10034  /// ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
10035  UNIMOD_ICPL = 200000365,
10036 
10037  /// Deamidated:18O(1): Deamidation in presence of O18.
10039 
10040  /// Cys->Dha: Dehydroalanine (from Cysteine).
10041  UNIMOD_Cys__Dha = 200000368,
10042 
10043  /// Pro->Pyrrolidone: Pyrrolidone from Proline.
10045 
10046  /// HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
10047  UNIMOD_HMVK = 200000371,
10048 
10049  /// Arg->Orn: Ornithine from Arginine.
10050  UNIMOD_Arg__Orn = 200000372,
10051 
10052  /// Dehydro: Half of a disulfide bridge.
10053  UNIMOD_Dehydro = 200000374,
10054 
10055  /// Diphthamide: Diphthamide.
10056  UNIMOD_Diphthamide = 200000375,
10057 
10058  /// Hydroxyfarnesyl: Hydroxyfarnesyl.
10060 
10061  /// Diacylglycerol: Diacylglycerol.
10063 
10064  /// Carboxyethyl: Carboxyethyl.
10065  UNIMOD_Carboxyethyl = 200000378,
10066 
10067  /// Hypusine: Hypusine.
10068  UNIMOD_Hypusine = 200000379,
10069 
10070  /// Retinylidene: Retinal.
10071  UNIMOD_Retinylidene = 200000380,
10072 
10073  /// Lys->AminoadipicAcid: Alpha-amino adipic acid.
10075 
10076  /// Cys->PyruvicAcid: Pyruvic acid from N-term cys.
10078 
10079  /// Ammonia-loss: Loss of ammonia.
10080  UNIMOD_Ammonia_loss = 200000385,
10081 
10082  /// Phycocyanobilin: Phycocyanobilin.
10084 
10085  /// Phycoerythrobilin: Phycoerythrobilin.
10087 
10088  /// Phytochromobilin: Phytochromobilin.
10090 
10091  /// Heme: Heme.
10092  UNIMOD_Heme = 200000390,
10093 
10094  /// Molybdopterin: Molybdopterin.
10096 
10097  /// Quinone: Quinone.
10098  UNIMOD_Quinone = 200000392,
10099 
10100  /// Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
10102 
10103  /// GPIanchor: Glycosylphosphatidylinositol.
10104  UNIMOD_GPIanchor = 200000394,
10105 
10106  /// PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
10108 
10109  /// GlycerylPE: Glycerylphosphorylethanolamine.
10110  UNIMOD_GlycerylPE = 200000396,
10111 
10112  /// Triiodothyronine: Triiodo.
10114 
10115  /// Thyroxine: Tetraiodo.
10116  UNIMOD_Thyroxine = 200000398,
10117 
10118  /// Tyr->Dha: Dehydroalanine (from Tyrosine).
10119  UNIMOD_Tyr__Dha = 200000400,
10120 
10121  /// Didehydro: 2-amino-3-oxo-butanoic_acid.
10122  UNIMOD_Didehydro = 200000401,
10123 
10124  /// Cys->Oxoalanine: Oxoalanine.
10126 
10127  /// Ser->LacticAcid: Lactic acid from N-term Ser.
10129 
10130  /// Phosphoadenosine: AMP.
10132 
10133  /// Hydroxycinnamyl: Hydroxycinnamyl.
10135 
10136  /// Glycosyl: Glycosyl-L-hydroxyproline.
10137  UNIMOD_Glycosyl = 200000408,
10138 
10139  /// FMNH: Flavin mononucleotide.
10140  UNIMOD_FMNH = 200000409,
10141 
10142  /// Archaeol: S-diphytanylglycerol diether.
10143  UNIMOD_Archaeol = 200000410,
10144 
10145  /// Phenylisocyanate: Phenyl isocyanate.
10147 
10148  /// Phenylisocyanate:2H(5): D5-phenyl isocyanate.
10150 
10151  /// Phosphoguanosine: Phospho-guanosine.
10153 
10154  /// Hydroxymethyl: Hydroxymethyl.
10156 
10157  /// MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
10159 
10160  /// Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
10162 
10163  /// PhosphoUridine: Uridine phosphodiester.
10165 
10166  /// Glycerophospho: Glycerophospho.
10168 
10169  /// Carboxy->Thiocarboxy: Thiocarboxylic acid.
10171 
10172  /// Sulfide: Persulfide.
10173  UNIMOD_Sulfide = 200000421,
10174 
10175  /// PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
10177 
10178  /// Delta:Se(1): Selenyl.
10179  UNIMOD_Delta_Se_1_ = 200000423,
10180 
10181  /// MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
10183 
10184  /// Dioxidation: Dihydroxy.
10185  UNIMOD_Dioxidation = 200000425,
10186 
10187  /// Octanoyl: Octanoyl.
10188  UNIMOD_Octanoyl = 200000426,
10189 
10190  /// PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
10192 
10193  /// PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
10194  UNIMOD_PhosphoHex = 200000429,
10195 
10196  /// Palmitoleyl: Palmitoleyl.
10197  UNIMOD_Palmitoleyl = 200000431,
10198 
10199  /// Cholesterol: Cholesterol ester.
10200  UNIMOD_Cholesterol = 200000432,
10201 
10202  /// Didehydroretinylidene: 3,4-didehydroretinylidene.
10204 
10205  /// CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
10206  UNIMOD_CHDH = 200000434,
10207 
10208  /// Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
10210 
10211  /// Hydroxyheme: Hydroxyheme.
10212  UNIMOD_Hydroxyheme = 200000436,
10213 
10214  /// MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
10215  UNIMOD_MicrocinC7 = 200000437,
10216 
10217  /// Cyano: Cyano.
10218  UNIMOD_Cyano = 200000438,
10219 
10220  /// Diironsubcluster: Hydrogenase diiron subcluster.
10222 
10223  /// Amidino: Amidino.
10224  UNIMOD_Amidino = 200000440,
10225 
10226  /// FMN: O3-(riboflavin phosphoryl).
10227  UNIMOD_FMN = 200000442,
10228 
10229  /// FMNC: S-(4a-FMN).
10230  UNIMOD_FMNC = 200000443,
10231 
10232  /// CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
10233  UNIMOD_CuSMo = 200000444,
10234 
10235  /// Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
10237 
10238  /// Deoxy: Reduction.
10239  UNIMOD_Deoxy = 200000447,
10240 
10241  /// Microcin: Microcin E492 siderophore ester from serine.
10242  UNIMOD_Microcin = 200000448,
10243 
10244  /// Decanoyl: Lipid.
10245  UNIMOD_Decanoyl = 200000449,
10246 
10247  /// Glu: Monoglutamyl.
10248  UNIMOD_Glu = 200000450,
10249 
10250  /// GluGlu: Diglutamyl.
10251  UNIMOD_GluGlu = 200000451,
10252 
10253  /// GluGluGlu: Triglutamyl.
10254  UNIMOD_GluGluGlu = 200000452,
10255 
10256  /// GluGluGluGlu: Tetraglutamyl.
10257  UNIMOD_GluGluGluGlu = 200000453,
10258 
10259  /// HexN: Hexosamine.
10260  UNIMOD_HexN = 200000454,
10261 
10262  /// Xlink:DMP[154]: Free monolink of DMP crosslinker.
10264 
10265  /// NDA: Naphthalene-2,3-dicarboxaldehyde.
10266  UNIMOD_NDA = 200000457,
10267 
10268  /// SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
10269  UNIMOD_SPITC_13C_6_ = 200000464,
10270 
10271  /// AEC-MAEC: Aminoethylcysteine.
10272  UNIMOD_AEC_MAEC = 200000472,
10273 
10274  /// TMAB: 4-trimethyllammoniumbutyryl-.
10275  UNIMOD_TMAB = 200000476,
10276 
10277  /// TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
10278  UNIMOD_TMAB_2H_9_ = 200000477,
10279 
10280  /// FTC: Fluorescein-5-thiosemicarbazide.
10281  UNIMOD_FTC = 200000478,
10282 
10283  /// Label:2H(4): 4,4,5,5-D4 Lysine.
10284  UNIMOD_Label_2H_4_ = 200000481,
10285 
10286  /// DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
10287  UNIMOD_DHP = 200000488,
10288 
10289  /// Hep: Heptose.
10290  UNIMOD_Hep = 200000490,
10291 
10292  /// BADGE: Bisphenol A diglycidyl ether derivative.
10293  UNIMOD_BADGE = 200000493,
10294 
10295  /// CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
10296  UNIMOD_CyDye_Cy3 = 200000494,
10297 
10298  /// CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
10299  UNIMOD_CyDye_Cy5 = 200000495,
10300 
10301  /// BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
10302  UNIMOD_BHTOH = 200000498,
10303 
10304  /// IGBP:13C(2): Heavy IDBEST tag for quantitation.
10305  UNIMOD_IGBP_13C_2_ = 200000499,
10306 
10307  /// Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
10309 
10310  /// PyMIC: 3-methyl-2-pyridyl isocyanate.
10311  UNIMOD_PyMIC = 200000501,
10312 
10313  /// LG-lactam-K: Levuglandinyl - lysine lactam adduct.
10314  UNIMOD_LG_lactam_K = 200000503,
10315 
10316  /// LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
10317  UNIMOD_LG_Hlactam_K = 200000504,
10318 
10319  /// LG-lactam-R: Levuglandinyl - arginine lactam adduct.
10320  UNIMOD_LG_lactam_R = 200000505,
10321 
10322  /// LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
10323  UNIMOD_LG_Hlactam_R = 200000506,
10324 
10325  /// Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
10327 
10328  /// Hex(2): Lactosylation.
10329  UNIMOD_Hex_2_ = 200000512,
10330 
10331  /// C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
10332  UNIMOD_C8_QAT = 200000513,
10333 
10334  /// PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
10336 
10337  /// FNEM: Fluorescein-5-maleimide.
10338  UNIMOD_FNEM = 200000515,
10339 
10340  /// Diethyl: Diethylation, analogous to Dimethylation.
10341  UNIMOD_Diethyl = 200000518,
10342 
10343  /// BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
10344  UNIMOD_BisANS = 200000519,
10345 
10346  /// Piperidine: Piperidination.
10347  UNIMOD_Piperidine = 200000520,
10348 
10349  /// Maleimide-PEO2-Biotin: Maleimide-Biotin.
10351 
10352  /// Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
10354 
10355  /// CLIP_TRAQ_2: CLIP_TRAQ_2.
10356  UNIMOD_CLIP_TRAQ_2 = 200000525,
10357 
10358  /// Dethiomethyl: Prompt loss of side chain from oxidised Met.
10359  UNIMOD_Dethiomethyl = 200000526,
10360 
10361  /// Methyl+Deamidated: Deamidation followed by a methylation.
10363 
10364  /// Delta:H(5)C(2): Dimethylation of proline residue.
10366 
10367  /// Cation:K: Replacement of proton by potassium.
10368  UNIMOD_Cation_K = 200000530,
10369 
10370  /// Cation:Cu[I]: Replacement of proton by copper.
10371  UNIMOD_Cation_Cu_I_ = 200000531,
10372 
10373  /// iTRAQ4plex114: Accurate mass for 114.
10375 
10376  /// iTRAQ4plex115: Accurate mass for 115.
10378 
10379  /// Dibromo: Dibromo.
10380  UNIMOD_Dibromo = 200000534,
10381 
10382  /// LRGG: Ubiquitination.
10383  UNIMOD_LRGG = 200000535,
10384 
10385  /// CLIP_TRAQ_3: CLIP_TRAQ_3.
10386  UNIMOD_CLIP_TRAQ_3 = 200000536,
10387 
10388  /// CLIP_TRAQ_4: CLIP_TRAQ_4.
10389  UNIMOD_CLIP_TRAQ_4 = 200000537,
10390 
10391  /// Biotin:Cayman-10141: Was 15dB-biotin.
10393 
10394  /// Biotin:Cayman-10013: Was PGA1-biotin.
10396 
10397  /// Ala->Ser: Ala->Ser substitution.
10398  UNIMOD_Ala__Ser = 200000540,
10399 
10400  /// Ala->Thr: Ala->Thr substitution.
10401  UNIMOD_Ala__Thr = 200000541,
10402 
10403  /// Ala->Asp: Ala->Asp substitution.
10404  UNIMOD_Ala__Asp = 200000542,
10405 
10406  /// Ala->Pro: Ala->Pro substitution.
10407  UNIMOD_Ala__Pro = 200000543,
10408 
10409  /// Ala->Gly: Ala->Gly substitution.
10410  UNIMOD_Ala__Gly = 200000544,
10411 
10412  /// Ala->Glu: Ala->Glu substitution.
10413  UNIMOD_Ala__Glu = 200000545,
10414 
10415  /// Ala->Val: Ala->Val substitution.
10416  UNIMOD_Ala__Val = 200000546,
10417 
10418  /// Cys->Phe: Cys->Phe substitution.
10419  UNIMOD_Cys__Phe = 200000547,
10420 
10421  /// Cys->Ser: Cys->Ser substitution.
10422  UNIMOD_Cys__Ser = 200000548,
10423 
10424  /// Cys->Trp: Cys->Trp substitution.
10425  UNIMOD_Cys__Trp = 200000549,
10426 
10427  /// Cys->Tyr: Cys->Tyr substitution.
10428  UNIMOD_Cys__Tyr = 200000550,
10429 
10430  /// Cys->Arg: Cys->Arg substitution.
10431  UNIMOD_Cys__Arg = 200000551,
10432 
10433  /// Cys->Gly: Cys->Gly substitution.
10434  UNIMOD_Cys__Gly = 200000552,
10435 
10436  /// Asp->Ala: Asp->Ala substitution.
10437  UNIMOD_Asp__Ala = 200000553,
10438 
10439  /// Asp->His: Asp->His substitution.
10440  UNIMOD_Asp__His = 200000554,
10441 
10442  /// Asp->Asn: Asp->Asn substitution.
10443  UNIMOD_Asp__Asn = 200000555,
10444 
10445  /// Asp->Gly: Asp->Gly substitution.
10446  UNIMOD_Asp__Gly = 200000556,
10447 
10448  /// Asp->Tyr: Asp->Tyr substitution.
10449  UNIMOD_Asp__Tyr = 200000557,
10450 
10451  /// Asp->Glu: Asp->Glu substitution.
10452  UNIMOD_Asp__Glu = 200000558,
10453 
10454  /// Asp->Val: Asp->Val substitution.
10455  UNIMOD_Asp__Val = 200000559,
10456 
10457  /// Glu->Ala: Glu->Ala substitution.
10458  UNIMOD_Glu__Ala = 200000560,
10459 
10460  /// Glu->Gln: Glu->Gln substitution.
10461  UNIMOD_Glu__Gln = 200000561,
10462 
10463  /// Glu->Asp: Glu->Asp substitution.
10464  UNIMOD_Glu__Asp = 200000562,
10465 
10466  /// Glu->Lys: Glu->Lys substitution.
10467  UNIMOD_Glu__Lys = 200000563,
10468 
10469  /// Glu->Gly: Glu->Gly substitution.
10470  UNIMOD_Glu__Gly = 200000564,
10471 
10472  /// Glu->Val: Glu->Val substitution.
10473  UNIMOD_Glu__Val = 200000565,
10474 
10475  /// Phe->Ser: Phe->Ser substitution.
10476  UNIMOD_Phe__Ser = 200000566,
10477 
10478  /// Phe->Cys: Phe->Cys substitution.
10479  UNIMOD_Phe__Cys = 200000567,
10480 
10481  /// Phe->Xle: Phe->Leu/Ile substitution.
10482  UNIMOD_Phe__Xle = 200000568,
10483 
10484  /// Phe->Tyr: Phe->Tyr substitution.
10485  UNIMOD_Phe__Tyr = 200000569,
10486 
10487  /// Phe->Val: Phe->Val substitution.
10488  UNIMOD_Phe__Val = 200000570,
10489 
10490  /// Gly->Ala: Gly->Ala substitution.
10491  UNIMOD_Gly__Ala = 200000571,
10492 
10493  /// Gly->Ser: Gly->Ser substitution.
10494  UNIMOD_Gly__Ser = 200000572,
10495 
10496  /// Gly->Trp: Gly->Trp substitution.
10497  UNIMOD_Gly__Trp = 200000573,
10498 
10499  /// Gly->Glu: Gly->Glu substitution.
10500  UNIMOD_Gly__Glu = 200000574,
10501 
10502  /// Gly->Val: Gly->Val substitution.
10503  UNIMOD_Gly__Val = 200000575,
10504 
10505  /// Gly->Asp: Gly->Asp substitution.
10506  UNIMOD_Gly__Asp = 200000576,
10507 
10508  /// Gly->Cys: Gly->Cys substitution.
10509  UNIMOD_Gly__Cys = 200000577,
10510 
10511  /// Gly->Arg: Gly->Arg substitution.
10512  UNIMOD_Gly__Arg = 200000578,
10513 
10514  /// His->Pro: His->Pro substitution.
10515  UNIMOD_His__Pro = 200000580,
10516 
10517  /// His->Tyr: His->Tyr substitution.
10518  UNIMOD_His__Tyr = 200000581,
10519 
10520  /// His->Gln: His->Gln substitution.
10521  UNIMOD_His__Gln = 200000582,
10522 
10523  /// His->Arg: His->Arg substitution.
10524  UNIMOD_His__Arg = 200000584,
10525 
10526  /// His->Xle: His->Leu/Ile substitution.
10527  UNIMOD_His__Xle = 200000585,
10528 
10529  /// Xle->Thr: Leu/Ile->Thr substitution.
10530  UNIMOD_Xle__Thr = 200000588,
10531 
10532  /// Xle->Asn: Leu/Ile->Asn substitution.
10533  UNIMOD_Xle__Asn = 200000589,
10534 
10535  /// Xle->Lys: Leu/Ile->Lys substitution.
10536  UNIMOD_Xle__Lys = 200000590,
10537 
10538  /// Lys->Thr: Lys->Thr substitution.
10539  UNIMOD_Lys__Thr = 200000594,
10540 
10541  /// Lys->Asn: Lys->Asn substitution.
10542  UNIMOD_Lys__Asn = 200000595,
10543 
10544  /// Lys->Glu: Lys->Glu substitution.
10545  UNIMOD_Lys__Glu = 200000596,
10546 
10547  /// Lys->Gln: Lys->Gln substitution.
10548  UNIMOD_Lys__Gln = 200000597,
10549 
10550  /// Lys->Met: Lys->Met substitution.
10551  UNIMOD_Lys__Met = 200000598,
10552 
10553  /// Lys->Arg: Lys->Arg substitution.
10554  UNIMOD_Lys__Arg = 200000599,
10555 
10556  /// Lys->Xle: Lys->Leu/Ile substitution.
10557  UNIMOD_Lys__Xle = 200000600,
10558 
10559  /// Xle->Ser: Leu/Ile->Ser substitution.
10560  UNIMOD_Xle__Ser = 200000601,
10561 
10562  /// Xle->Phe: Leu/Ile->Phe substitution.
10563  UNIMOD_Xle__Phe = 200000602,
10564 
10565  /// Xle->Trp: Leu/Ile->Trp substitution.
10566  UNIMOD_Xle__Trp = 200000603,
10567 
10568  /// Xle->Pro: Leu/Ile->Pro substitution.
10569  UNIMOD_Xle__Pro = 200000604,
10570 
10571  /// Xle->Val: Leu/Ile->Val substitution.
10572  UNIMOD_Xle__Val = 200000605,
10573 
10574  /// Xle->His: Leu/Ile->His substitution.
10575  UNIMOD_Xle__His = 200000606,
10576 
10577  /// Xle->Gln: Leu/Ile->Gln substitution.
10578  UNIMOD_Xle__Gln = 200000607,
10579 
10580  /// Xle->Met: Leu/Ile->Met substitution.
10581  UNIMOD_Xle__Met = 200000608,
10582 
10583  /// Xle->Arg: Leu/Ile->Arg substitution.
10584  UNIMOD_Xle__Arg = 200000609,
10585 
10586  /// Met->Thr: Met->Thr substitution.
10587  UNIMOD_Met__Thr = 200000610,
10588 
10589  /// Met->Arg: Met->Arg substitution.
10590  UNIMOD_Met__Arg = 200000611,
10591 
10592  /// Met->Lys: Met->Lys substitution.
10593  UNIMOD_Met__Lys = 200000613,
10594 
10595  /// Met->Xle: Met->Leu/Ile substitution.
10596  UNIMOD_Met__Xle = 200000614,
10597 
10598  /// Met->Val: Met->Val substitution.
10599  UNIMOD_Met__Val = 200000615,
10600 
10601  /// Asn->Ser: Asn->Ser substitution.
10602  UNIMOD_Asn__Ser = 200000616,
10603 
10604  /// Asn->Thr: Asn->Thr substitution.
10605  UNIMOD_Asn__Thr = 200000617,
10606 
10607  /// Asn->Lys: Asn->Lys substitution.
10608  UNIMOD_Asn__Lys = 200000618,
10609 
10610  /// Asn->Tyr: Asn->Tyr substitution.
10611  UNIMOD_Asn__Tyr = 200000619,
10612 
10613  /// Asn->His: Asn->His substitution.
10614  UNIMOD_Asn__His = 200000620,
10615 
10616  /// Asn->Asp: Asn->Asp substitution.
10617  UNIMOD_Asn__Asp = 200000621,
10618 
10619  /// Asn->Xle: Asn->Leu/Ile substitution.
10620  UNIMOD_Asn__Xle = 200000622,
10621 
10622  /// Pro->Ser: Pro->Ser substitution.
10623  UNIMOD_Pro__Ser = 200000623,
10624 
10625  /// Pro->Ala: Pro->Ala substitution.
10626  UNIMOD_Pro__Ala = 200000624,
10627 
10628  /// Pro->His: Pro->His substitution.
10629  UNIMOD_Pro__His = 200000625,
10630 
10631  /// Pro->Gln: Pro->Gln substitution.
10632  UNIMOD_Pro__Gln = 200000626,
10633 
10634  /// Pro->Thr: Pro->Thr substitution.
10635  UNIMOD_Pro__Thr = 200000627,
10636 
10637  /// Pro->Arg: Pro->Arg substitution.
10638  UNIMOD_Pro__Arg = 200000628,
10639 
10640  /// Pro->Xle: Pro->Leu/Ile substitution.
10641  UNIMOD_Pro__Xle = 200000629,
10642 
10643  /// Gln->Pro: Gln->Pro substitution.
10644  UNIMOD_Gln__Pro = 200000630,
10645 
10646  /// Gln->Lys: Gln->Lys substitution.
10647  UNIMOD_Gln__Lys = 200000631,
10648 
10649  /// Gln->Glu: Gln->Glu substitution.
10650  UNIMOD_Gln__Glu = 200000632,
10651 
10652  /// Gln->His: Gln->His substitution.
10653  UNIMOD_Gln__His = 200000633,
10654 
10655  /// Gln->Arg: Gln->Arg substitution.
10656  UNIMOD_Gln__Arg = 200000634,
10657 
10658  /// Gln->Xle: Gln->Leu/Ile substitution.
10659  UNIMOD_Gln__Xle = 200000635,
10660 
10661  /// Arg->Ser: Arg->Ser substitution.
10662  UNIMOD_Arg__Ser = 200000636,
10663 
10664  /// Arg->Trp: Arg->Trp substitution.
10665  UNIMOD_Arg__Trp = 200000637,
10666 
10667  /// Arg->Thr: Arg->Thr substitution.
10668  UNIMOD_Arg__Thr = 200000638,
10669 
10670  /// Arg->Pro: Arg->Pro substitution.
10671  UNIMOD_Arg__Pro = 200000639,
10672 
10673  /// Arg->Lys: Arg->Lys substitution.
10674  UNIMOD_Arg__Lys = 200000640,
10675 
10676  /// Arg->His: Arg->His substitution.
10677  UNIMOD_Arg__His = 200000641,
10678 
10679  /// Arg->Gln: Arg->Gln substitution.
10680  UNIMOD_Arg__Gln = 200000642,
10681 
10682  /// Arg->Met: Arg->Met substitution.
10683  UNIMOD_Arg__Met = 200000643,
10684 
10685  /// Arg->Cys: Arg->Cys substitution.
10686  UNIMOD_Arg__Cys = 200000644,
10687 
10688  /// Arg->Xle: Arg->Leu/Ile substitution.
10689  UNIMOD_Arg__Xle = 200000645,
10690 
10691  /// Arg->Gly: Arg->Gly substitution.
10692  UNIMOD_Arg__Gly = 200000646,
10693 
10694  /// Ser->Phe: Ser->Phe substitution.
10695  UNIMOD_Ser__Phe = 200000647,
10696 
10697  /// Ser->Ala: Ser->Ala substitution.
10698  UNIMOD_Ser__Ala = 200000648,
10699 
10700  /// Ser->Trp: Ser->Trp substitution.
10701  UNIMOD_Ser__Trp = 200000649,
10702 
10703  /// Ser->Thr: Ser->Thr substitution.
10704  UNIMOD_Ser__Thr = 200000650,
10705 
10706  /// Ser->Asn: Ser->Asn substitution.
10707  UNIMOD_Ser__Asn = 200000651,
10708 
10709  /// Ser->Pro: Ser->Pro substitution.
10710  UNIMOD_Ser__Pro = 200000652,
10711 
10712  /// Ser->Tyr: Ser->Tyr substitution.
10713  UNIMOD_Ser__Tyr = 200000653,
10714 
10715  /// Ser->Cys: Ser->Cys substitution.
10716  UNIMOD_Ser__Cys = 200000654,
10717 
10718  /// Ser->Arg: Ser->Arg substitution.
10719  UNIMOD_Ser__Arg = 200000655,
10720 
10721  /// Ser->Xle: Ser->Leu/Ile substitution.
10722  UNIMOD_Ser__Xle = 200000656,
10723 
10724  /// Ser->Gly: Ser->Gly substitution.
10725  UNIMOD_Ser__Gly = 200000657,
10726 
10727  /// Thr->Ser: Thr->Ser substitution.
10728  UNIMOD_Thr__Ser = 200000658,
10729 
10730  /// Thr->Ala: Thr->Ala substitution.
10731  UNIMOD_Thr__Ala = 200000659,
10732 
10733  /// Thr->Asn: Thr->Asn substitution.
10734  UNIMOD_Thr__Asn = 200000660,
10735 
10736  /// Thr->Lys: Thr->Lys substitution.
10737  UNIMOD_Thr__Lys = 200000661,
10738 
10739  /// Thr->Pro: Thr->Pro substitution.
10740  UNIMOD_Thr__Pro = 200000662,
10741 
10742  /// Thr->Met: Thr->Met substitution.
10743  UNIMOD_Thr__Met = 200000663,
10744 
10745  /// Thr->Xle: Thr->Leu/Ile substitution.
10746  UNIMOD_Thr__Xle = 200000664,
10747 
10748  /// Thr->Arg: Thr->Arg substitution.
10749  UNIMOD_Thr__Arg = 200000665,
10750 
10751  /// Val->Phe: Val->Phe substitution.
10752  UNIMOD_Val__Phe = 200000666,
10753 
10754  /// Val->Ala: Val->Ala substitution.
10755  UNIMOD_Val__Ala = 200000667,
10756 
10757  /// Val->Glu: Val->Glu substitution.
10758  UNIMOD_Val__Glu = 200000668,
10759 
10760  /// Val->Met: Val->Met substitution.
10761  UNIMOD_Val__Met = 200000669,
10762 
10763  /// Val->Asp: Val->Asp substitution.
10764  UNIMOD_Val__Asp = 200000670,
10765 
10766  /// Val->Xle: Val->Leu/Ile substitution.
10767  UNIMOD_Val__Xle = 200000671,
10768 
10769  /// Val->Gly: Val->Gly substitution.
10770  UNIMOD_Val__Gly = 200000672,
10771 
10772  /// Trp->Ser: Trp->Ser substitution.
10773  UNIMOD_Trp__Ser = 200000673,
10774 
10775  /// Trp->Cys: Trp->Cys substitution.
10776  UNIMOD_Trp__Cys = 200000674,
10777 
10778  /// Trp->Arg: Trp->Arg substitution.
10779  UNIMOD_Trp__Arg = 200000675,
10780 
10781  /// Trp->Gly: Trp->Gly substitution.
10782  UNIMOD_Trp__Gly = 200000676,
10783 
10784  /// Trp->Xle: Trp->Leu/Ile substitution.
10785  UNIMOD_Trp__Xle = 200000677,
10786 
10787  /// Tyr->Phe: Tyr->Phe substitution.
10788  UNIMOD_Tyr__Phe = 200000678,
10789 
10790  /// Tyr->Ser: Tyr->Ser substitution.
10791  UNIMOD_Tyr__Ser = 200000679,
10792 
10793  /// Tyr->Asn: Tyr->Asn substitution.
10794  UNIMOD_Tyr__Asn = 200000680,
10795 
10796  /// Tyr->His: Tyr->His substitution.
10797  UNIMOD_Tyr__His = 200000681,
10798 
10799  /// Tyr->Asp: Tyr->Asp substitution.
10800  UNIMOD_Tyr__Asp = 200000682,
10801 
10802  /// Tyr->Cys: Tyr->Cys substitution.
10803  UNIMOD_Tyr__Cys = 200000683,
10804 
10805  /// BDMAPP: Mass Defect Tag on lysine e-amino.
10806  UNIMOD_BDMAPP = 200000684,
10807 
10808  /// NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
10809  UNIMOD_NA_LNO2 = 200000685,
10810 
10811  /// NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
10812  UNIMOD_NA_OA_NO2 = 200000686,
10813 
10814  /// ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
10815  UNIMOD_ICPL_2H_4_ = 200000687,
10816 
10817  /// Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
10819 
10820  /// Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
10822 
10823  /// NIC: Nicotinic Acid.
10824  UNIMOD_NIC = 200000697,
10825 
10826  /// dNIC: Deuterated Nicotinic Acid.
10827  UNIMOD_dNIC = 200000698,
10828 
10829  /// HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
10831 
10832  /// 4-ONE: 4-Oxononenal (ONE).
10833  UNIMOD_4_ONE = 200000721,
10834 
10835  /// O-Dimethylphosphate: O-Dimethylphosphorylation.
10837 
10838  /// O-Methylphosphate: O-Methylphosphorylation.
10840 
10841  /// Diethylphosphate: O-Diethylphosphorylation.
10843 
10844  /// Ethylphosphate: O-Ethylphosphorylation.
10846 
10847  /// O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
10849 
10850  /// Methylphosphonate: Methylphosphonylation.
10852 
10853  /// O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
10855 
10856  /// iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
10857  UNIMOD_iTRAQ8plex = 200000730,
10858 
10859  /// iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
10861 
10862  /// Ethanolamine: Carboxyl modification with ethanolamine.
10863  UNIMOD_Ethanolamine = 200000734,
10864 
10865  /// BEMAD_ST: Beta elimination of modified S or T followed by Michael addition of DTT.
10866  UNIMOD_BEMAD_ST = 200000735,
10867 
10868  /// BEMAD_C: Beta elimination of alkylated Cys followed by Michael addition of DTT.
10869  UNIMOD_BEMAD_C = 200000736,
10870 
10871  /// TMT6plex: Sixplex Tandem Mass Tag®.
10872  UNIMOD_TMT6plex = 200000737,
10873 
10874  /// TMT2plex: Duplex Tandem Mass Tag®.
10875  UNIMOD_TMT2plex = 200000738,
10876 
10877  /// TMT: Native Tandem Mass Tag®.
10878  UNIMOD_TMT = 200000739,
10879 
10880  /// ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
10881  UNIMOD_ExacTagThiol = 200000740,
10882 
10883  /// ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
10884  UNIMOD_ExacTagAmine = 200000741,
10885 
10886  /// 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
10888 
10889  /// NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
10890  UNIMOD_NO_SMX_SEMD = 200000744,
10891 
10892  /// NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
10893  UNIMOD_NO_SMX_SMCT = 200000745,
10894 
10895  /// NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
10896  UNIMOD_NO_SMX_SIMD = 200000746,
10897 
10898  /// Malonyl: Malonylation.
10899  UNIMOD_Malonyl = 200000747,
10900 
10901  /// 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
10902  UNIMOD_3sulfo = 200000748,
10903 
10904  /// trifluoro: Trifluoroleucine replacement of leucine.
10905  UNIMOD_trifluoro = 200000750,
10906 
10907  /// TNBS: Tri nitro benzene.
10908  UNIMOD_TNBS = 200000751,
10909 
10910  /// IDEnT: Isotope Distribution Encoded Tag.
10911  UNIMOD_IDEnT = 200000762,
10912 
10913  /// BEMAD_ST:2H(6): Beta elimination of modified S or T followed by Michael addition of labelled DTT.
10915 
10916  /// BEMAD_C:2H(6): Beta elimination of alkylated Cys followed by Michael addition of labelled DTT.
10918 
10919  /// Met-loss: Removal of initiator methionine from protein N-terminus.
10920  UNIMOD_Met_loss = 200000765,
10921 
10922  /// Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.
10924 
10925  /// Menadione-HQ: Menadione hydroquinone derivative.
10926  UNIMOD_Menadione_HQ = 200000767,
10927 
10928  /// Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
10930 
10931  /// lapachenole: Lapachenole photochemically added to cysteine.
10932  UNIMOD_lapachenole = 200000771,
10933 
10934  /// Label:13C(5): 13C(5) Silac label.
10935  UNIMOD_Label_13C_5_ = 200000772,
10936 
10937  /// maleimide: Maleimide.
10938  UNIMOD_maleimide = 200000773,
10939 
10940  /// Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
10942 
10943  /// Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
10945 
10946  /// NEM:2H(5): D5 N-ethylmaleimide on cysteines.
10947  UNIMOD_NEM_2H_5_ = 200000776,
10948 
10949  /// AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
10951 
10952  /// Hex(1)HexNAc(1): Hex1HexNAc1.
10954 
10955  /// Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
10957 
10958  /// Biotin:Thermo-21345: Was PentylamineBiotin.
10960 
10961  /// Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
10962  UNIMOD_Pentylamine = 200000801,
10963 
10964  /// Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
10966 
10967  /// Cy3b-maleimide: Fluorescent dye that labels cysteines.
10969 
10970  /// Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
10972 
10973  /// Xlink:BMOE: Intact or monolink BMOE crosslinker.
10974  UNIMOD_Xlink_BMOE = 200000824,
10975 
10976  /// Xlink:DFDNB: Intact DFDNB crosslinker.
10977  UNIMOD_Xlink_DFDNB = 200000825,
10978 
10979  /// TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
10980  UNIMOD_TMPP_Ac = 200000827,
10981 
10982  /// Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
10984 
10985  /// Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
10987 
10988  /// Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
10990 
10991  /// Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
10993 
10994  /// Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
10995  UNIMOD_Arg__Npo = 200000837,
10996 
10997  /// EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
10998  UNIMOD_EQIGG = 200000846,
10999 
11000  /// Arg2PG: Adduct of phenylglyoxal with Arg.
11001  UNIMOD_Arg2PG = 200000848,
11002 
11003  /// cGMP: S-guanylation.
11004  UNIMOD_cGMP = 200000849,
11005 
11006  /// cGMP+RMP-loss: S-guanylation-2.
11008 
11009  /// Label:2H(4)+GG: Ubiquitination 2H4 lysine.
11011 
11012  /// MG-H1: Methylglyoxal-derived hydroimidazolone.
11013  UNIMOD_MG_H1 = 200000859,
11014 
11015  /// G-H1: Glyoxal-derived hydroimiadazolone.
11016  UNIMOD_G_H1 = 200000860,
11017 
11018  /// ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
11019  UNIMOD_ZGB = 200000861,
11020 
11021  /// Label:13C(1)2H(3): SILAC.
11023 
11024  /// Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
11026 
11027  /// ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
11029 
11030  /// QEQTGG: SUMOylation by SUMO-1.
11031  UNIMOD_QEQTGG = 200000876,
11032 
11033  /// QQQTGG: SUMOylation by SUMO-2/3.
11034  UNIMOD_QQQTGG = 200000877,
11035 
11036  /// Bodipy: Bodipy modifications onto cysteine.
11037  UNIMOD_Bodipy = 200000878,
11038 
11039  /// Biotin:Thermo-21325: Was ChromoBiotin.
11041 
11042  /// Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
11044 
11045  /// HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
11047 
11048  /// MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
11049  UNIMOD_MDCC = 200000887,
11050 
11051  /// mTRAQ: MTRAQ light.
11052  UNIMOD_mTRAQ = 200000888,
11053 
11054  /// mTRAQ:13C(3)15N(1): MTRAQ medium.
11056 
11057  /// DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
11059 
11060  /// Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
11062 
11063  /// CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
11065 
11066  /// CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
11068 
11069  /// Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
11071 
11072  /// Met->Aha: Methionine replacement by azido homoalanine.
11073  UNIMOD_Met__Aha = 200000896,
11074 
11075  /// Label:15N(4): SILAC 15N(4).
11076  UNIMOD_Label_15N_4_ = 200000897,
11077 
11078  /// pyrophospho: Pyrophosphorylation of Ser/Thr.
11079  UNIMOD_pyrophospho = 200000898,
11080 
11081  /// Met->Hpg: Methionine replacement by homopropargylglycine.
11082  UNIMOD_Met__Hpg = 200000899,
11083 
11084  /// 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
11085  UNIMOD_4AcAllylGal = 200000901,
11086 
11087  /// DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
11089 
11090  /// Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
11091  UNIMOD_Lys__CamCys = 200000903,
11092 
11093  /// Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
11094  UNIMOD_Phe__CamCys = 200000904,
11095 
11096  /// Leu->MetOx: Leu->Met substitution and sulfoxidation.
11097  UNIMOD_Leu__MetOx = 200000905,
11098 
11099  /// Lys->MetOx: Lys->Met substitution and sulfoxidation.
11100  UNIMOD_Lys__MetOx = 200000906,
11101 
11102  /// Galactosyl: Gluconoylation.
11103  UNIMOD_Galactosyl = 200000907,
11104 
11105  /// Xlink:SMCC[321]: Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine.
11107 
11108  /// Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
11110 
11111  /// MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
11112  UNIMOD_MTSL = 200000911,
11113 
11114  /// HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
11115  UNIMOD_HNE_BAHAH = 200000912,
11116 
11117  /// Methylmalonylation: Methylmalonylation on Serine.
11119 
11120  /// Ethoxyformyl: Ethoxyformylation.
11121  UNIMOD_Ethoxyformyl = 200000915,
11122 
11123  /// Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
11125 
11126  /// ethylamino: Ethyl amino.
11127  UNIMOD_ethylamino = 200000926,
11128 
11129  /// MercaptoEthanol: 2-OH-ethyl thio-Ser.
11131 
11132  /// Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
11134 
11135  /// VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
11136  UNIMOD_VFQQQTGG = 200000932,
11137 
11138  /// VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
11139  UNIMOD_VIEVYQEQTGG = 200000933,
11140 
11141  /// AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
11142  UNIMOD_AMTzHexNAc2 = 200000934,
11143 
11144  /// Atto495Maleimide: High molecular absorption maleimide label for proteins.
11146 
11147  /// Chlorination: Chlorination of tyrosine residues.
11148  UNIMOD_Chlorination = 200000936,
11149 
11150  /// dichlorination: Dichlorination.
11152 
11153  /// AROD: Cysteine modifier.
11154  UNIMOD_AROD = 200000938,
11155 
11156  /// Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.
11158 
11159  /// Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.
11161 
11162  /// DNPS: 2,4-Dinitrobenzenesulfenyl.
11163  UNIMOD_DNPS = 200000941,
11164 
11165  /// SulfoGMBS: High molecular absorption label for proteins.
11166  UNIMOD_SulfoGMBS = 200000942,
11167 
11168  /// DimethylamineGMBS: Modified GMBS X linker.
11170 
11171  /// Label:15N(2)2H(9): SILAC label.
11173 
11174  /// LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
11176 
11177  /// LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
11178  UNIMOD_LG_pyrrole = 200000947,
11179 
11180  /// LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
11182 
11183  /// 3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
11185 
11186  /// Cation:Li: Replacement of proton by lithium.
11187  UNIMOD_Cation_Li = 200000950,
11188 
11189  /// Cation:Ca[II]: Replacement of 2 protons by calcium.
11191 
11192  /// Cation:Fe[II]: Replacement of 2 protons by iron.
11194 
11195  /// Cation:Ni[II]: Replacement of 2 protons by nickel.
11197 
11198  /// Cation:Zn[II]: Replacement of 2 protons by zinc.
11200 
11201  /// Cation:Ag: Replacement of proton by silver.
11202  UNIMOD_Cation_Ag = 200000955,
11203 
11204  /// Cation:Mg[II]: Replacement of 2 protons by magnesium.
11206 
11207  /// 2-succinyl: S-(2-succinyl) cysteine.
11208  UNIMOD_2_succinyl = 200000957,
11209 
11210  /// Propargylamine: Propargylamine.
11212 
11213  /// Phosphopropargyl: Phospho-propargylamine.
11215 
11216  /// SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
11217  UNIMOD_SUMO2135 = 200000960,
11218 
11219  /// SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
11220  UNIMOD_SUMO3549 = 200000961,
11221 
11222  /// thioacylPA: Membrane protein extraction.
11223  UNIMOD_thioacylPA = 200000967,
11224 
11225  /// maleimide3: Maleimide-3-saccharide.
11226  UNIMOD_maleimide3 = 200000971,
11227 
11228  /// maleimide5: Maleimide-5-saccharide.
11229  UNIMOD_maleimide5 = 200000972,
11230 
11231  /// Puromycin: Puromycin.
11232  UNIMOD_Puromycin = 200000973,
11233 
11234  /// Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
11235  UNIMOD_Carbofuran = 200000977,
11236 
11237  /// BITC: Benzyl isothiocyanate.
11238  UNIMOD_BITC = 200000978,
11239 
11240  /// PEITC: Phenethyl isothiocyanate.
11241  UNIMOD_PEITC = 200000979,
11242 
11243  /// glucosone: Condensation product of glucosone.
11244  UNIMOD_glucosone = 200000981,
11245 
11246  /// cysTMT: Native cysteine-reactive Tandem Mass Tag®.
11247  UNIMOD_cysTMT = 200000984,
11248 
11249  /// cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
11250  UNIMOD_cysTMT6plex = 200000985,
11251 
11252  /// Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
11254 
11255  /// Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
11257 
11258  /// Ammonium: Replacement of proton with ammonium ion.
11259  UNIMOD_Ammonium = 200000989,
11260 
11261  /// ISD_z+2_ion: ISD (z+2)-series.
11262  UNIMOD_ISD_z_2_ion = 200000991,
11263 
11264  /// Biotin:Sigma-B1267: Was Biotin-maleimide.
11266 
11267  /// Label:15N(1): 15N(1).
11268  UNIMOD_Label_15N_1_ = 200000994,
11269 
11270  /// Label:15N(2): 15N(2).
11271  UNIMOD_Label_15N_2_ = 200000995,
11272 
11273  /// Label:15N(3): 15N(3).
11274  UNIMOD_Label_15N_3_ = 200000996,
11275 
11276  /// sulfo+amino: Aminotyrosine with sulfation.
11277  UNIMOD_sulfo_amino = 200000997,
11278 
11279  /// AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
11280  UNIMOD_AHA_Alkyne = 200001000,
11281 
11282  /// AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
11284 
11285  /// EGCG1: (-)-epigallocatechin-3-gallate.
11286  UNIMOD_EGCG1 = 200001002,
11287 
11288  /// EGCG2: (-)-dehydroepigallocatechin.
11289  UNIMOD_EGCG2 = 200001003,
11290 
11291  /// Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
11293 
11294  /// Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
11296 
11297  /// Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
11299 
11300  /// Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
11302 
11303  /// Cys->CamSec: Sec Iodoacetamide derivative.
11304  UNIMOD_Cys__CamSec = 200001008,
11305 
11306  /// Thiazolidine: Formaldehyde adduct.
11307  UNIMOD_Thiazolidine = 200001009,
11308 
11309  /// DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
11311 
11312  /// Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
11314 
11315  /// glycidamide: Glycidamide adduct.
11316  UNIMOD_glycidamide = 200001014,
11317 
11318  /// Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
11319  UNIMOD_Ahx2_Hsl = 200001015,
11320 
11321  /// DMPO: DMPO spin-trap nitrone adduct.
11322  UNIMOD_DMPO = 200001017,
11323 
11324  /// ICDID: Isotope-Coded Dimedone light form.
11325  UNIMOD_ICDID = 200001018,
11326 
11327  /// ICDID:2H(6): Isotope-Coded Dimedone heavy form.
11328  UNIMOD_ICDID_2H_6_ = 200001019,
11329 
11330  /// Xlink:DSS[156]: Water-quenched monolink of DSS/BS3 crosslinker.
11332 
11333  /// Xlink:EGS[244]: Water quenched monolink of EGS cross-linker.
11335 
11336  /// Xlink:DST[132]: Water quenched monolink of DST crosslinker.
11338 
11339  /// Xlink:DTSSP[192]: Water quenched monolink of DSP/DTSSP crosslinker.
11341 
11342  /// Xlink:SMCC[237]: Water quenched monolink of SMCC.
11344 
11345  /// Xlink:DMP[140]: Water quenched monolink of DMP crosslinker.
11347 
11348  /// Xlink:EGS[115]: Cleavage product of EGS protein crosslinks by hydroylamine treatment.
11350 
11351  /// Biotin:Thermo-88310: Desthiobiotin modification of lysine.
11353 
11354  /// 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
11356 
11357  /// Cys->SecNEM: N-ethylmaleimide on selenocysteines.
11358  UNIMOD_Cys__SecNEM = 200001033,
11359 
11360  /// Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
11362 
11363  /// Thiadiazole: Thiadiazolydation of Cys.
11364  UNIMOD_Thiadiazole = 200001035,
11365 
11366  /// Withaferin: Modification of cystein by withaferin.
11367  UNIMOD_Withaferin = 200001036,
11368 
11369  /// Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
11371 
11372  /// TAMRA-FP: TAMRA fluorophosphonate modification of serine.
11373  UNIMOD_TAMRA_FP = 200001038,
11374 
11375  /// Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
11377 
11378  /// Deoxyhypusine: Deoxyhypusine.
11380 
11381  /// Acetyldeoxyhypusine: Acetyldeoxyhypusine.
11383 
11384  /// Acetylhypusine: Acetylhypusine.
11386 
11387  /// Ala->Cys: Ala->Cys substitution.
11388  UNIMOD_Ala__Cys = 200001044,
11389 
11390  /// Ala->Phe: Ala->Phe substitution.
11391  UNIMOD_Ala__Phe = 200001045,
11392 
11393  /// Ala->His: Ala->His substitution.
11394  UNIMOD_Ala__His = 200001046,
11395 
11396  /// Ala->Xle: Ala->Leu/Ile substitution.
11397  UNIMOD_Ala__Xle = 200001047,
11398 
11399  /// Ala->Lys: Ala->Lys substitution.
11400  UNIMOD_Ala__Lys = 200001048,
11401 
11402  /// Ala->Met: Ala->Met substitution.
11403  UNIMOD_Ala__Met = 200001049,
11404 
11405  /// Ala->Asn: Ala->Asn substitution.
11406  UNIMOD_Ala__Asn = 200001050,
11407 
11408  /// Ala->Gln: Ala->Gln substitution.
11409  UNIMOD_Ala__Gln = 200001051,
11410 
11411  /// Ala->Arg: Ala->Arg substitution.
11412  UNIMOD_Ala__Arg = 200001052,
11413 
11414  /// Ala->Trp: Ala->Trp substitution.
11415  UNIMOD_Ala__Trp = 200001053,
11416 
11417  /// Ala->Tyr: Ala->Tyr substitution.
11418  UNIMOD_Ala__Tyr = 200001054,
11419 
11420  /// Cys->Ala: Cys->Ala substitution.
11421  UNIMOD_Cys__Ala = 200001055,
11422 
11423  /// Cys->Asp: Cys->Asp substitution.
11424  UNIMOD_Cys__Asp = 200001056,
11425 
11426  /// Cys->Glu: Cys->Glu substitution.
11427  UNIMOD_Cys__Glu = 200001057,
11428 
11429  /// Cys->His: Cys->His substitution.
11430  UNIMOD_Cys__His = 200001058,
11431 
11432  /// Cys->Xle: Cys->Leu/Ile substitution.
11433  UNIMOD_Cys__Xle = 200001059,
11434 
11435  /// Cys->Lys: Cys->Lys substitution.
11436  UNIMOD_Cys__Lys = 200001060,
11437 
11438  /// Cys->Met: Cys->Met substitution.
11439  UNIMOD_Cys__Met = 200001061,
11440 
11441  /// Cys->Asn: Cys->Asn substitution.
11442  UNIMOD_Cys__Asn = 200001062,
11443 
11444  /// Cys->Pro: Cys->Pro substitution.
11445  UNIMOD_Cys__Pro = 200001063,
11446 
11447  /// Cys->Gln: Cys->Gln substitution.
11448  UNIMOD_Cys__Gln = 200001064,
11449 
11450  /// Cys->Thr: Cys->Thr substitution.
11451  UNIMOD_Cys__Thr = 200001065,
11452 
11453  /// Cys->Val: Cys->Val substitution.
11454  UNIMOD_Cys__Val = 200001066,
11455 
11456  /// Asp->Cys: Asp->Cys substitution.
11457  UNIMOD_Asp__Cys = 200001067,
11458 
11459  /// Asp->Phe: Asp->Phe substitution.
11460  UNIMOD_Asp__Phe = 200001068,
11461 
11462  /// Asp->Xle: Asp->Leu/Ile substitution.
11463  UNIMOD_Asp__Xle = 200001069,
11464 
11465  /// Asp->Lys: Asp->Lys substitution.
11466  UNIMOD_Asp__Lys = 200001070,
11467 
11468  /// Asp->Met: Asp->Met substitution.
11469  UNIMOD_Asp__Met = 200001071,
11470 
11471  /// Asp->Pro: Asp->Pro substitution.
11472  UNIMOD_Asp__Pro = 200001072,
11473 
11474  /// Asp->Gln: Asp->Gln substitution.
11475  UNIMOD_Asp__Gln = 200001073,
11476 
11477  /// Asp->Arg: Asp->Arg substitution.
11478  UNIMOD_Asp__Arg = 200001074,
11479 
11480  /// Asp->Ser: Asp->Ser substitution.
11481  UNIMOD_Asp__Ser = 200001075,
11482 
11483  /// Asp->Thr: Asp->Thr substitution.
11484  UNIMOD_Asp__Thr = 200001076,
11485 
11486  /// Asp->Trp: Asp->Trp substitution.
11487  UNIMOD_Asp__Trp = 200001077,
11488 
11489  /// Glu->Cys: Glu->Cys substitution.
11490  UNIMOD_Glu__Cys = 200001078,
11491 
11492  /// Glu->Phe: Glu->Phe substitution.
11493  UNIMOD_Glu__Phe = 200001079,
11494 
11495  /// Glu->His: Glu->His substitution.
11496  UNIMOD_Glu__His = 200001080,
11497 
11498  /// Glu->Xle: Glu->Leu/Ile substitution.
11499  UNIMOD_Glu__Xle = 200001081,
11500 
11501  /// Glu->Met: Glu->Met substitution.
11502  UNIMOD_Glu__Met = 200001082,
11503 
11504  /// Glu->Asn: Glu->Asn substitution.
11505  UNIMOD_Glu__Asn = 200001083,
11506 
11507  /// Glu->Pro: Glu->Pro substitution.
11508  UNIMOD_Glu__Pro = 200001084,
11509 
11510  /// Glu->Arg: Glu->Arg substitution.
11511  UNIMOD_Glu__Arg = 200001085,
11512 
11513  /// Glu->Ser: Glu->Ser substitution.
11514  UNIMOD_Glu__Ser = 200001086,
11515 
11516  /// Glu->Thr: Glu->Thr substitution.
11517  UNIMOD_Glu__Thr = 200001087,
11518 
11519  /// Glu->Trp: Glu->Trp substitution.
11520  UNIMOD_Glu__Trp = 200001088,
11521 
11522  /// Glu->Tyr: Glu->Tyr substitution.
11523  UNIMOD_Glu__Tyr = 200001089,
11524 
11525  /// Phe->Ala: Phe->Ala substitution.
11526  UNIMOD_Phe__Ala = 200001090,
11527 
11528  /// Phe->Asp: Phe->Asp substitution.
11529  UNIMOD_Phe__Asp = 200001091,
11530 
11531  /// Phe->Glu: Phe->Glu substitution.
11532  UNIMOD_Phe__Glu = 200001092,
11533 
11534  /// Phe->Gly: Phe->Gly substitution.
11535  UNIMOD_Phe__Gly = 200001093,
11536 
11537  /// Phe->His: Phe->His substitution.
11538  UNIMOD_Phe__His = 200001094,
11539 
11540  /// Phe->Lys: Phe->Lys substitution.
11541  UNIMOD_Phe__Lys = 200001095,
11542 
11543  /// Phe->Met: Phe->Met substitution.
11544  UNIMOD_Phe__Met = 200001096,
11545 
11546  /// Phe->Asn: Phe->Asn substitution.
11547  UNIMOD_Phe__Asn = 200001097,
11548 
11549  /// Phe->Pro: Phe->Pro substitution.
11550  UNIMOD_Phe__Pro = 200001098,
11551 
11552  /// Phe->Gln: Phe->Gln substitution.
11553  UNIMOD_Phe__Gln = 200001099,
11554 
11555  /// Phe->Arg: Phe->Arg substitution.
11556  UNIMOD_Phe__Arg = 200001100,
11557 
11558  /// Phe->Thr: Phe->Thr substitution.
11559  UNIMOD_Phe__Thr = 200001101,
11560 
11561  /// Phe->Trp: Phe->Trp substitution.
11562  UNIMOD_Phe__Trp = 200001102,
11563 
11564  /// Gly->Phe: Gly->Phe substitution.
11565  UNIMOD_Gly__Phe = 200001103,
11566 
11567  /// Gly->His: Gly->His substitution.
11568  UNIMOD_Gly__His = 200001104,
11569 
11570  /// Gly->Xle: Gly->Leu/Ile substitution.
11571  UNIMOD_Gly__Xle = 200001105,
11572 
11573  /// Gly->Lys: Gly->Lys substitution.
11574  UNIMOD_Gly__Lys = 200001106,
11575 
11576  /// Gly->Met: Gly->Met substitution.
11577  UNIMOD_Gly__Met = 200001107,
11578 
11579  /// Gly->Asn: Gly->Asn substitution.
11580  UNIMOD_Gly__Asn = 200001108,
11581 
11582  /// Gly->Pro: Gly->Pro substitution.
11583  UNIMOD_Gly__Pro = 200001109,
11584 
11585  /// Gly->Gln: Gly->Gln substitution.
11586  UNIMOD_Gly__Gln = 200001110,
11587 
11588  /// Gly->Thr: Gly->Thr substitution.
11589  UNIMOD_Gly__Thr = 200001111,
11590 
11591  /// Gly->Tyr: Gly->Tyr substitution.
11592  UNIMOD_Gly__Tyr = 200001112,
11593 
11594  /// His->Ala: His->Ala substitution.
11595  UNIMOD_His__Ala = 200001113,
11596 
11597  /// His->Cys: His->Cys substitution.
11598  UNIMOD_His__Cys = 200001114,
11599 
11600  /// His->Glu: His->Glu substitution.
11601  UNIMOD_His__Glu = 200001115,
11602 
11603  /// His->Phe: His->Phe substitution.
11604  UNIMOD_His__Phe = 200001116,
11605 
11606  /// His->Gly: His->Gly substitution.
11607  UNIMOD_His__Gly = 200001117,
11608 
11609  /// His->Lys: His->Lys substitution.
11610  UNIMOD_His__Lys = 200001119,
11611 
11612  /// His->Met: His->Met substitution.
11613  UNIMOD_His__Met = 200001120,
11614 
11615  /// His->Ser: His->Ser substitution.
11616  UNIMOD_His__Ser = 200001121,
11617 
11618  /// His->Thr: His->Thr substitution.
11619  UNIMOD_His__Thr = 200001122,
11620 
11621  /// His->Val: His->Val substitution.
11622  UNIMOD_His__Val = 200001123,
11623 
11624  /// His->Trp: His->Trp substitution.
11625  UNIMOD_His__Trp = 200001124,
11626 
11627  /// Xle->Ala: Leu/Ile->Ala substitution.
11628  UNIMOD_Xle__Ala = 200001125,
11629 
11630  /// Xle->Cys: Leu/Ile->Cys substitution.
11631  UNIMOD_Xle__Cys = 200001126,
11632 
11633  /// Xle->Asp: Leu/Ile->Asp substitution.
11634  UNIMOD_Xle__Asp = 200001127,
11635 
11636  /// Xle->Glu: Leu/Ile->Glu substitution.
11637  UNIMOD_Xle__Glu = 200001128,
11638 
11639  /// Xle->Gly: Leu/Ile->Gly substitution.
11640  UNIMOD_Xle__Gly = 200001129,
11641 
11642  /// Xle->Tyr: Leu/Ile->Tyr substitution.
11643  UNIMOD_Xle__Tyr = 200001130,
11644 
11645  /// Lys->Ala: Lys->Ala substitution.
11646  UNIMOD_Lys__Ala = 200001131,
11647 
11648  /// Lys->Cys: Lys->Cys substitution.
11649  UNIMOD_Lys__Cys = 200001132,
11650 
11651  /// Lys->Asp: Lys->Asp substitution.
11652  UNIMOD_Lys__Asp = 200001133,
11653 
11654  /// Lys->Phe: Lys->Phe substitution.
11655  UNIMOD_Lys__Phe = 200001134,
11656 
11657  /// Lys->Gly: Lys->Gly substitution.
11658  UNIMOD_Lys__Gly = 200001135,
11659 
11660  /// Lys->His: Lys->His substitution.
11661  UNIMOD_Lys__His = 200001136,
11662 
11663  /// Lys->Pro: Lys->Pro substitution.
11664  UNIMOD_Lys__Pro = 200001137,
11665 
11666  /// Lys->Ser: Lys->Ser substitution.
11667  UNIMOD_Lys__Ser = 200001138,
11668 
11669  /// Lys->Val: Lys->Val substitution.
11670  UNIMOD_Lys__Val = 200001139,
11671 
11672  /// Lys->Trp: Lys->Trp substitution.
11673  UNIMOD_Lys__Trp = 200001140,
11674 
11675  /// Lys->Tyr: Lys->Tyr substitution.
11676  UNIMOD_Lys__Tyr = 200001141,
11677 
11678  /// Met->Ala: Met->Ala substitution.
11679  UNIMOD_Met__Ala = 200001142,
11680 
11681  /// Met->Cys: Met->Cys substitution.
11682  UNIMOD_Met__Cys = 200001143,
11683 
11684  /// Met->Asp: Met->Asp substitution.
11685  UNIMOD_Met__Asp = 200001144,
11686 
11687  /// Met->Glu: Met->Glu substitution.
11688  UNIMOD_Met__Glu = 200001145,
11689 
11690  /// Met->Phe: Met->Phe substitution.
11691  UNIMOD_Met__Phe = 200001146,
11692 
11693  /// Met->Gly: Met->Gly substitution.
11694  UNIMOD_Met__Gly = 200001147,
11695 
11696  /// Met->His: Met->His substitution.
11697  UNIMOD_Met__His = 200001148,
11698 
11699  /// Met->Asn: Met->Asn substitution.
11700  UNIMOD_Met__Asn = 200001149,
11701 
11702  /// Met->Pro: Met->Pro substitution.
11703  UNIMOD_Met__Pro = 200001150,
11704 
11705  /// Met->Gln: Met->Gln substitution.
11706  UNIMOD_Met__Gln = 200001151,
11707 
11708  /// Met->Ser: Met->Ser substitution.
11709  UNIMOD_Met__Ser = 200001152,
11710 
11711  /// Met->Trp: Met->Trp substitution.
11712  UNIMOD_Met__Trp = 200001153,
11713 
11714  /// Met->Tyr: Met->Tyr substitution.
11715  UNIMOD_Met__Tyr = 200001154,
11716 
11717  /// Asn->Ala: Asn->Ala substitution.
11718  UNIMOD_Asn__Ala = 200001155,
11719 
11720  /// Asn->Cys: Asn->Cys substitution.
11721  UNIMOD_Asn__Cys = 200001156,
11722 
11723  /// Asn->Glu: Asn->Glu substitution.
11724  UNIMOD_Asn__Glu = 200001157,
11725 
11726  /// Asn->Phe: Asn->Phe substitution.
11727  UNIMOD_Asn__Phe = 200001158,
11728 
11729  /// Asn->Gly: Asn->Gly substitution.
11730  UNIMOD_Asn__Gly = 200001159,
11731 
11732  /// Asn->Met: Asn->Met substitution.
11733  UNIMOD_Asn__Met = 200001160,
11734 
11735  /// Asn->Pro: Asn->Pro substitution.
11736  UNIMOD_Asn__Pro = 200001161,
11737 
11738  /// Asn->Gln: Asn->Gln substitution.
11739  UNIMOD_Asn__Gln = 200001162,
11740 
11741  /// Asn->Arg: Asn->Arg substitution.
11742  UNIMOD_Asn__Arg = 200001163,
11743 
11744  /// Asn->Val: Asn->Val substitution.
11745  UNIMOD_Asn__Val = 200001164,
11746 
11747  /// Asn->Trp: Asn->Trp substitution.
11748  UNIMOD_Asn__Trp = 200001165,
11749 
11750  /// Pro->Cys: Pro->Cys substitution.
11751  UNIMOD_Pro__Cys = 200001166,
11752 
11753  /// Pro->Asp: Pro->Asp substitution.
11754  UNIMOD_Pro__Asp = 200001167,
11755 
11756  /// Pro->Glu: Pro->Glu substitution.
11757  UNIMOD_Pro__Glu = 200001168,
11758 
11759  /// Pro->Phe: Pro->Phe substitution.
11760  UNIMOD_Pro__Phe = 200001169,
11761 
11762  /// Pro->Gly: Pro->Gly substitution.
11763  UNIMOD_Pro__Gly = 200001170,
11764 
11765  /// Pro->Lys: Pro->Lys substitution.
11766  UNIMOD_Pro__Lys = 200001171,
11767 
11768  /// Pro->Met: Pro->Met substitution.
11769  UNIMOD_Pro__Met = 200001172,
11770 
11771  /// Pro->Asn: Pro->Asn substitution.
11772  UNIMOD_Pro__Asn = 200001173,
11773 
11774  /// Pro->Val: Pro->Val substitution.
11775  UNIMOD_Pro__Val = 200001174,
11776 
11777  /// Pro->Trp: Pro->Trp substitution.
11778  UNIMOD_Pro__Trp = 200001175,
11779 
11780  /// Pro->Tyr: Pro->Tyr substitution.
11781  UNIMOD_Pro__Tyr = 200001176,
11782 
11783  /// Gln->Ala: Gln->Ala substitution.
11784  UNIMOD_Gln__Ala = 200001177,
11785 
11786  /// Gln->Cys: Gln->Cys substitution.
11787  UNIMOD_Gln__Cys = 200001178,
11788 
11789  /// Gln->Asp: Gln->Asp substitution.
11790  UNIMOD_Gln__Asp = 200001179,
11791 
11792  /// Gln->Phe: Gln->Phe substitution.
11793  UNIMOD_Gln__Phe = 200001180,
11794 
11795  /// Gln->Gly: Gln->Gly substitution.
11796  UNIMOD_Gln__Gly = 200001181,
11797 
11798  /// Gln->Met: Gln->Met substitution.
11799  UNIMOD_Gln__Met = 200001182,
11800 
11801  /// Gln->Asn: Gln->Asn substitution.
11802  UNIMOD_Gln__Asn = 200001183,
11803 
11804  /// Gln->Ser: Gln->Ser substitution.
11805  UNIMOD_Gln__Ser = 200001184,
11806 
11807  /// Gln->Thr: Gln->Thr substitution.
11808  UNIMOD_Gln__Thr = 200001185,
11809 
11810  /// Gln->Val: Gln->Val substitution.
11811  UNIMOD_Gln__Val = 200001186,
11812 
11813  /// Gln->Trp: Gln->Trp substitution.
11814  UNIMOD_Gln__Trp = 200001187,
11815 
11816  /// Gln->Tyr: Gln->Tyr substitution.
11817  UNIMOD_Gln__Tyr = 200001188,
11818 
11819  /// Arg->Ala: Arg->Ala substitution.
11820  UNIMOD_Arg__Ala = 200001189,
11821 
11822  /// Arg->Asp: Arg->Asp substitution.
11823  UNIMOD_Arg__Asp = 200001190,
11824 
11825  /// Arg->Glu: Arg->Glu substitution.
11826  UNIMOD_Arg__Glu = 200001191,
11827 
11828  /// Arg->Asn: Arg->Asn substitution.
11829  UNIMOD_Arg__Asn = 200001192,
11830 
11831  /// Arg->Val: Arg->Val substitution.
11832  UNIMOD_Arg__Val = 200001193,
11833 
11834  /// Arg->Tyr: Arg->Tyr substitution.
11835  UNIMOD_Arg__Tyr = 200001194,
11836 
11837  /// Arg->Phe: Arg->Phe substitution.
11838  UNIMOD_Arg__Phe = 200001195,
11839 
11840  /// Ser->Asp: Ser->Asp substitution.
11841  UNIMOD_Ser__Asp = 200001196,
11842 
11843  /// Ser->Glu: Ser->Glu substitution.
11844  UNIMOD_Ser__Glu = 200001197,
11845 
11846  /// Ser->His: Ser->His substitution.
11847  UNIMOD_Ser__His = 200001198,
11848 
11849  /// Ser->Lys: Ser->Lys substitution.
11850  UNIMOD_Ser__Lys = 200001199,
11851 
11852  /// Ser->Met: Ser->Met substitution.
11853  UNIMOD_Ser__Met = 200001200,
11854 
11855  /// Ser->Gln: Ser->Gln substitution.
11856  UNIMOD_Ser__Gln = 200001201,
11857 
11858  /// Ser->Val: Ser->Val substitution.
11859  UNIMOD_Ser__Val = 200001202,
11860 
11861  /// Thr->Cys: Thr->Cys substitution.
11862  UNIMOD_Thr__Cys = 200001203,
11863 
11864  /// Thr->Asp: Thr->Asp substitution.
11865  UNIMOD_Thr__Asp = 200001204,
11866 
11867  /// Thr->Glu: Thr->Glu substitution.
11868  UNIMOD_Thr__Glu = 200001205,
11869 
11870  /// Thr->Phe: Thr->Phe substitution.
11871  UNIMOD_Thr__Phe = 200001206,
11872 
11873  /// Thr->Gly: Thr->Gly substitution.
11874  UNIMOD_Thr__Gly = 200001207,
11875 
11876  /// Thr->His: Thr->His substitution.
11877  UNIMOD_Thr__His = 200001208,
11878 
11879  /// Thr->Gln: Thr->Gln substitution.
11880  UNIMOD_Thr__Gln = 200001209,
11881 
11882  /// Thr->Val: Thr->Val substitution.
11883  UNIMOD_Thr__Val = 200001210,
11884 
11885  /// Thr->Trp: Thr->Trp substitution.
11886  UNIMOD_Thr__Trp = 200001211,
11887 
11888  /// Thr->Tyr: Thr->Tyr substitution.
11889  UNIMOD_Thr__Tyr = 200001212,
11890 
11891  /// Val->Cys: Val->Cys substitution.
11892  UNIMOD_Val__Cys = 200001213,
11893 
11894  /// Val->His: Val->His substitution.
11895  UNIMOD_Val__His = 200001214,
11896 
11897  /// Val->Lys: Val->Lys substitution.
11898  UNIMOD_Val__Lys = 200001215,
11899 
11900  /// Val->Asn: Val->Asn substitution.
11901  UNIMOD_Val__Asn = 200001216,
11902 
11903  /// Val->Pro: Val->Pro substitution.
11904  UNIMOD_Val__Pro = 200001217,
11905 
11906  /// Val->Gln: Val->Gln substitution.
11907  UNIMOD_Val__Gln = 200001218,
11908 
11909  /// Val->Arg: Val->Arg substitution.
11910  UNIMOD_Val__Arg = 200001219,
11911 
11912  /// Val->Ser: Val->Ser substitution.
11913  UNIMOD_Val__Ser = 200001220,
11914 
11915  /// Val->Thr: Val->Thr substitution.
11916  UNIMOD_Val__Thr = 200001221,
11917 
11918  /// Val->Trp: Val->Trp substitution.
11919  UNIMOD_Val__Trp = 200001222,
11920 
11921  /// Val->Tyr: Val->Tyr substitution.
11922  UNIMOD_Val__Tyr = 200001223,
11923 
11924  /// Trp->Ala: Trp->Ala substitution.
11925  UNIMOD_Trp__Ala = 200001224,
11926 
11927  /// Trp->Asp: Trp->Asp substitution.
11928  UNIMOD_Trp__Asp = 200001225,
11929 
11930  /// Trp->Glu: Trp->Glu substitution.
11931  UNIMOD_Trp__Glu = 200001226,
11932 
11933  /// Trp->Phe: Trp->Phe substitution.
11934  UNIMOD_Trp__Phe = 200001227,
11935 
11936  /// Trp->His: Trp->His substitution.
11937  UNIMOD_Trp__His = 200001228,
11938 
11939  /// Trp->Lys: Trp->Lys substitution.
11940  UNIMOD_Trp__Lys = 200001229,
11941 
11942  /// Trp->Met: Trp->Met substitution.
11943  UNIMOD_Trp__Met = 200001230,
11944 
11945  /// Trp->Asn: Trp->Asn substitution.
11946  UNIMOD_Trp__Asn = 200001231,
11947 
11948  /// Trp->Pro: Trp->Pro substitution.
11949  UNIMOD_Trp__Pro = 200001232,
11950 
11951  /// Trp->Gln: Trp->Gln substitution.
11952  UNIMOD_Trp__Gln = 200001233,
11953 
11954  /// Trp->Thr: Trp->Thr substitution.
11955  UNIMOD_Trp__Thr = 200001234,
11956 
11957  /// Trp->Val: Trp->Val substitution.
11958  UNIMOD_Trp__Val = 200001235,
11959 
11960  /// Trp->Tyr: Trp->Tyr substitution.
11961  UNIMOD_Trp__Tyr = 200001236,
11962 
11963  /// Tyr->Ala: Tyr->Ala substitution.
11964  UNIMOD_Tyr__Ala = 200001237,
11965 
11966  /// Tyr->Glu: Tyr->Glu substitution.
11967  UNIMOD_Tyr__Glu = 200001238,
11968 
11969  /// Tyr->Gly: Tyr->Gly substitution.
11970  UNIMOD_Tyr__Gly = 200001239,
11971 
11972  /// Tyr->Lys: Tyr->Lys substitution.
11973  UNIMOD_Tyr__Lys = 200001240,
11974 
11975  /// Tyr->Met: Tyr->Met substitution.
11976  UNIMOD_Tyr__Met = 200001241,
11977 
11978  /// Tyr->Pro: Tyr->Pro substitution.
11979  UNIMOD_Tyr__Pro = 200001242,
11980 
11981  /// Tyr->Gln: Tyr->Gln substitution.
11982  UNIMOD_Tyr__Gln = 200001243,
11983 
11984  /// Tyr->Arg: Tyr->Arg substitution.
11985  UNIMOD_Tyr__Arg = 200001244,
11986 
11987  /// Tyr->Thr: Tyr->Thr substitution.
11988  UNIMOD_Tyr__Thr = 200001245,
11989 
11990  /// Tyr->Val: Tyr->Val substitution.
11991  UNIMOD_Tyr__Val = 200001246,
11992 
11993  /// Tyr->Trp: Tyr->Trp substitution.
11994  UNIMOD_Tyr__Trp = 200001247,
11995 
11996  /// Tyr->Xle: Tyr->Leu/Ile substitution.
11997  UNIMOD_Tyr__Xle = 200001248,
11998 
11999  /// AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
12000  UNIMOD_AHA_SS = 200001249,
12001 
12002  /// AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
12003  UNIMOD_AHA_SS_CAM = 200001250,
12004 
12005  /// Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
12007 
12008  /// Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
12010 
12011  /// 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
12013 
12014  /// Saligenin: O-toluene.
12015  UNIMOD_Saligenin = 200001254,
12016 
12017  /// Cresylphosphate: O-toluyl-phosphorylation.
12019 
12020  /// CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
12022 
12023  /// Ub-Br2: Ub Bromide probe addition.
12024  UNIMOD_Ub_Br2 = 200001257,
12025 
12026  /// Ub-VME: Ubiquitin vinylmethylester.
12027  UNIMOD_Ub_VME = 200001258,
12028 
12029  /// Ub-amide: Ub amide probe addition.
12030  UNIMOD_Ub_amide = 200001260,
12031 
12032  /// Ub-fluorescein: Ub Fluorescein probe addition.
12034 
12035  /// 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
12037 
12038  /// Gly: Addition of Glycine.
12039  UNIMOD_Gly = 200001263,
12040 
12041  /// pupylation: Addition of GGE.
12042  UNIMOD_pupylation = 200001264,
12043 
12044  /// Label:13C(4): 13C4 Methionine label.
12045  UNIMOD_Label_13C_4_ = 200001266,
12046 
12047  /// Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
12049 
12050  /// HCysThiolactone: N-Homocysteine thiolactone.
12052 
12053  /// HCysteinyl: S-homocysteinylation.
12054  UNIMOD_HCysteinyl = 200001271,
12055 
12056  /// UgiJoullie: Side reaction of HisTag.
12057  UNIMOD_UgiJoullie = 200001276,
12058 
12059  /// Dipyridyl: Cys modified with dipy ligand.
12060  UNIMOD_Dipyridyl = 200001277,
12061 
12062  /// Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
12063  UNIMOD_Furan = 200001278,
12064 
12065  /// Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
12066  UNIMOD_Difuran = 200001279,
12067 
12068  /// BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
12070 
12071  /// UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
12073 
12074  /// UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
12076 
12077  /// IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
12079 
12080  /// Arg-loss: Loss of arginine due to transpeptidation.
12081  UNIMOD_Arg_loss = 200001287,
12082 
12083  /// Arg: Addition of arginine due to transpeptidation.
12084  UNIMOD_Arg = 200001288,
12085 
12086  /// Butyryl: Butyryl.
12087  UNIMOD_Butyryl = 200001289,
12088 
12089  /// Dicarbamidomethyl: Double Carbamidomethylation.
12091 
12092  /// Dimethyl:2H(6): Dimethyl-Medium.
12094 
12095  /// GGQ: SUMOylation leaving GlyGlyGln.
12096  UNIMOD_GGQ = 200001292,
12097 
12098  /// QTGG: SUMOylation leaving GlnThrGlyGly.
12099  UNIMOD_QTGG = 200001293,
12100 
12101  /// Label:13C(3): 13C3 label for SILAC.
12102  UNIMOD_Label_13C_3_ = 200001296,
12103 
12104  /// Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
12106 
12107  /// Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
12109 
12110  /// Label:2H(10): 2H(10) label.
12111  UNIMOD_Label_2H_10_ = 200001299,
12112 
12113  /// Label:2H(4)13C(1): Label:2H(4)13C(1).
12115 
12116  /// Lys: Addition of lysine due to transpeptidation.
12117  UNIMOD_Lys = 200001301,
12118 
12119  /// mTRAQ:13C(6)15N(2): MTRAQ heavy.
12121 
12122  /// NeuAc: N-acetyl neuraminic acid.
12123  UNIMOD_NeuAc = 200001303,
12124 
12125  /// NeuGc: N-glycoyl neuraminic acid.
12126  UNIMOD_NeuGc = 200001304,
12127 
12128  /// Propyl: Propyl.
12129  UNIMOD_Propyl = 200001305,
12130 
12131  /// Propyl:2H(6): Propyl:2H(6).
12132  UNIMOD_Propyl_2H_6_ = 200001306,
12133 
12134  /// Propiophenone: Propiophenone.
12136 
12137  /// Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
12139 
12140  /// Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
12142 
12143  /// biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
12145 
12146  /// MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
12148 
12149  /// EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
12151 
12152  /// Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
12154 
12155  /// DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
12157 
12158  /// DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
12159  UNIMOD_DiLeu4plex = 200001322,
12160 
12161  /// DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
12163 
12164  /// DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
12166 
12167  /// NEMsulfur: N-ethylmaleimideSulfur.
12168  UNIMOD_NEMsulfur = 200001326,
12169 
12170  /// SulfurDioxide: SulfurDioxide.
12172 
12173  /// NEMsulfurWater: N-ethylmaleimideSulfurWater.
12175 
12176  /// bisANS-sulfonates: BisANS with loss of both sulfonates.
12178 
12179  /// DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
12180  UNIMOD_DNCB_hapten = 200001331,
12181 
12182  /// Biotin:Thermo-21911: Biotin-PEG11-maleimide.
12184 
12185  /// iodoTMT: Native iodoacetyl Tandem Mass Tag®.
12186  UNIMOD_iodoTMT = 200001341,
12187 
12188  /// iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
12189  UNIMOD_iodoTMT6plex = 200001342,
12190 
12191  /// Phosphogluconoylation: Phosphogluconoylation.
12193 
12194  /// PS_Hapten: Reaction with phenyl salicylate (PS).
12195  UNIMOD_PS_Hapten = 200001345,
12196 
12197  /// Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
12199 
12200  /// benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group.
12202 
12203  /// CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
12205 
12206  /// azole: Formation of five membered aromatic heterocycle.
12207  UNIMOD_azole = 200001355,
12208 
12209  /// phosphoRibosyl: Phosphate-ribosylation.
12211 
12212  /// NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
12214 
12215  /// Crotonyl: Crotonylation.
12216  UNIMOD_Crotonyl = 200001363,
12217 
12218  /// O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
12220 
12221  /// N-dimethylphosphate: N-dimethylphosphate.
12223 
12224  /// dHex(1)Hex(1): Hex1dHex1.
12226 
12227  /// Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
12229 
12230  /// Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
12232 
12233  /// Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
12235 
12236  /// Acetyl:13C(2): Heavy acetylation.
12238 
12239  /// dHex(1)Hex(2): Hex2dHex1.
12241 
12242  /// dHex(1)Hex(3): Hex3dHex1.
12244 
12245  /// dHex(1)Hex(4): Hex4dHex1.
12247 
12248  /// dHex(1)Hex(5): Hex5dHex1.
12250 
12251  /// dHex(1)Hex(6): Hex6dHex1.
12253 
12254  /// methylsulfonylethyl: Reaction with methyl vinyl sulfone.
12256 
12257  /// ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
12259 
12260  /// phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
12262 
12263  /// PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage.
12265 
12266  /// Homocysteic_acid: Methionine oxidation to homocysteic acid.
12268 
12269  /// Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
12271 
12272  /// 3-phosphoglyceryl: 3-phosphoglyceryl.
12274 
12275  /// HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
12276  UNIMOD_HN2_mustard = 200001388,
12277 
12278  /// HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
12279  UNIMOD_HN3_mustard = 200001389,
12280 
12281  /// Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
12283 
12284  /// NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
12286 
12287  /// DiART6plex: Representative mass and accurate mass for 114.
12288  UNIMOD_DiART6plex = 200001392,
12289 
12290  /// DiART6plex115: Accurate mass for DiART6plex 115.
12292 
12293  /// DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
12295 
12296  /// DiART6plex117: Accurate mass for DiART6plex 117.
12298 
12299  /// DiART6plex118: Accurate mass for DiART6plex 118.
12301 
12302  /// Iodoacetanilide: Iodoacetanilide derivative.
12304 
12305  /// Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
12307 
12308  /// Dap-DSP: Diaminopimelic acid-DSP monolinked.
12309  UNIMOD_Dap_DSP = 200001399,
12310 
12311  /// MurNAc: N-Acetylmuramic acid.
12312  UNIMOD_MurNAc = 200001400,
12313 
12314  /// Label:2H(7)15N(4): Label:2H(7)15N(4).
12316 
12317  /// Label:2H(6)15N(1): Label:2H(6)15N(1).
12319 
12320  /// EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
12322 
12323  /// EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
12325 
12326  /// Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
12328 
12329  /// Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
12331 
12332  /// dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
12334 
12335  /// dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
12337 
12338  /// s-GlcNAc: O3S1HexNAc1.
12339  UNIMOD_s_GlcNAc = 200001412,
12340 
12341  /// PhosphoHex(2): H1O3P1Hex2.
12343 
12344  /// Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
12346 
12347  /// 15N-oxobutanoic: Loss of ammonia (15N).
12349 
12350  /// spermine: Spermine adduct.
12351  UNIMOD_spermine = 200001420,
12352 
12353  /// spermidine: Spermidine adduct.
12354  UNIMOD_spermidine = 200001421,
12355 
12356  /// Biotin:Thermo-21330: Biotin_PEG4.
12358 
12359  /// Pentose: Pentose.
12360  UNIMOD_Pentose = 200001425,
12361 
12362  /// Hex(1)Pent(1): Hex Pent.
12364 
12365  /// Hex(1)HexA(1): Hex HexA.
12367 
12368  /// Hex(1)Pent(2): Hex Pent(2).
12370 
12371  /// Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
12373 
12374  /// Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
12376 
12377  /// Hex(1)NeuAc(1): Hex NeuAc ---OR--- HexNAc Kdn.
12379 
12380  /// Hex(1)NeuGc(1): Hex NeuGc.
12382 
12383  /// HexNAc(3): HexNAc(3).
12384  UNIMOD_HexNAc_3_ = 200001433,
12385 
12386  /// HexNAc(1)NeuAc(1): HexNAc NeuAc.
12388 
12389  /// HexNAc(1)NeuGc(1): HexNAc NeuGc.
12391 
12392  /// Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
12394 
12395  /// Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
12397 
12398  /// Hex(2)HexNAc(1): Hex(2) HexNAc.
12400 
12401  /// Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
12403 
12404  /// Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
12406 
12407  /// Hex(1)Pent(3): Hex Pent(3).
12409 
12410  /// Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
12412 
12413  /// Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
12415 
12416  /// Hex(2)NeuAc(1): Hex(2) NeuAc ---OR--- Hex HexNAc Kdn.
12418 
12419  /// dHex(2)Hex(2): Hex2 dHex2.
12421 
12422  /// dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
12424 
12425  /// Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
12427 
12428  /// Hex(4): Hex(4).
12429  UNIMOD_Hex_4_ = 200001448,
12430 
12431  /// dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
12433 
12434  /// Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc ---OR--- dHex Hex HexNAc(2) NeuGc.
12436 
12437  /// Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
12439 
12440  /// Hex(4)HexNAc(2): Hex(4) HexNAc(2).
12442 
12443  /// dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
12445 
12446  /// dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
12448 
12449  /// Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
12451 
12452  /// Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
12454 
12455  /// Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
12457 
12458  /// Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
12460 
12461  /// dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
12463 
12464  /// Hex(7)HexNAc(1): Hex(7) HexNAc.
12466 
12467  /// Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc ---OR--- Hex(3) HexNAc(2) dHex NeuGc.
12469 
12470  /// dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
12472 
12473  /// dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
12475 
12476  /// Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
12478 
12479  /// Hex(6)HexNAc(2): Hex(6) HexNAc(2).
12481 
12482  /// Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
12484 
12485  /// dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
12487 
12488  /// Hex(5)HexNAc(3): Hex(5) HexNAc(3).
12490 
12491  /// Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
12493 
12494  /// Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
12496 
12497  /// dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
12499 
12500  /// dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
12502 
12503  /// Hex(8)HexNAc(1): Hex(8) HexNAc.
12505 
12506  /// dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
12508 
12509  /// dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
12511 
12512  /// dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
12514 
12515  /// dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
12517 
12518  /// dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
12520 
12521  /// Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
12523 
12524  /// Hex(7)HexNAc(2): Hex(7) HexNAc(2).
12526 
12527  /// dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
12529 
12530  /// Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
12532 
12533  /// Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
12535 
12536  /// dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
12538 
12539  /// dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
12541 
12542  /// Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
12544 
12545  /// Hex(6)HexNAc(3): Hex(6) HexNAc(3).
12547 
12548  /// Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc ---OR--- Hex(2) HexNAc(4) dHex NeuGc.
12550 
12551  /// Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
12553 
12554  /// Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
12556 
12557  /// Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
12559 
12560  /// dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3) ---OR--- Hex(4) HexNAc(2) dHex(2) NeuAc.
12562 
12563  /// dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
12565 
12566  /// dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
12568 
12569  /// Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
12571 
12572  /// Hex(4)HexNAc(5): Hex(4) HexNAc(5).
12574 
12575  /// dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
12577 
12578  /// dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
12580 
12581  /// dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
12583 
12584  /// dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
12586 
12587  /// dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc ---OR--- dHex(2) Hex(3) HexNAc(3) NeuGc.
12589 
12590  /// Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
12592 
12593  /// Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
12595 
12596  /// Hex(8)HexNAc(2): Hex(8) HexNAc(2).
12598 
12599  /// dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
12601 
12602  /// dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc ---OR--- Hex(5) HexNAc(3) NeuAc.
12604 
12605  /// dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
12607 
12608  /// dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
12610 
12611  /// dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
12613 
12614  /// dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
12616 
12617  /// dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
12619 
12620  /// dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
12622 
12623  /// Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
12625 
12626  /// Hex(7)HexNAc(3): Hex(7) HexNAc(3).
12628 
12629  /// dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
12631 
12632  /// Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
12634 
12635  /// Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
12637 
12638  /// dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
12640 
12641  /// dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
12643 
12644  /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
12646 
12647  /// Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
12649 
12650  /// Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
12652 
12653  /// dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
12655 
12656  /// Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
12658 
12659  /// dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
12661 
12662  /// dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
12664 
12665  /// dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
12667 
12668  /// dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
12670 
12671  /// dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
12673 
12674  /// Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
12676 
12677  /// Hex(9)HexNAc(2): Hex(9) HexNAc(2).
12679 
12680  /// Hex(4)HexNAc(6): Hex(4) HexNAc(6).
12682 
12683  /// dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
12685 
12686  /// dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc ---OR--- Hex(6) HexNAc(3) NeuAc.
12688 
12689  /// dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
12691 
12692  /// dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
12694 
12695  /// dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
12697 
12698  /// dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
12700 
12701  /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
12703 
12704  /// Hex(3)HexNAc(7): Hex(3) HexNAc(7).
12706 
12707  /// dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
12709 
12710  /// dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
12712 
12713  /// dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
12715 
12716  /// dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
12718 
12719  /// Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
12721 
12722  /// dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
12724 
12725  /// dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
12727 
12728  /// dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
12730 
12731  /// Hex(7)HexNAc(4): Hex(7) HexNAc(4).
12733 
12734  /// dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
12736 
12737  /// Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
12739 
12740  /// Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
12742 
12743  /// dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
12745 
12746  /// dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
12748 
12749  /// dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
12751 
12752  /// dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
12754 
12755  /// dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
12757 
12758  /// Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
12760 
12761  /// Hex(6)HexNAc(5): Hex(6) HexNAc(5).
12763 
12764  /// Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
12766 
12767  /// Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
12769 
12770  /// dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
12772 
12773  /// Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
12775 
12776  /// dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
12778 
12779  /// HexNAc(3)Sulf(1): HexNAc(3) Sulf.
12781 
12782  /// Hex(3)HexNAc(1): Hex(3) HexNAc.
12784 
12785  /// Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
12787 
12788  /// HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
12790 
12791  /// HexNAc(1)Kdn(2): HexNAc Kdn(2) ---OR--- Hex(2) HexNAc HexA.
12793 
12794  /// Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
12796 
12797  /// Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
12799 
12800  /// HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
12802 
12803  /// Hex(4)Phos(1): Hex(4) Phos.
12805 
12806  /// Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
12808 
12809  /// Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
12811 
12812  /// dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
12814 
12815  /// dHex(1)HexNAc(3): DHex HexNAc(3).
12817 
12818  /// dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn ---OR--- Hex(2) dHex NeuAc.
12820 
12821  /// Hex(1)HexNAc(3): Hex HexNAc(3).
12823 
12824  /// HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
12826 
12827  /// dHex(2)Hex(3): DHex(2) Hex(3).
12829 
12830  /// Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
12832 
12833  /// dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
12835 
12836  /// dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
12838 
12839  /// dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
12841 
12842  /// Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
12844 
12845  /// Hex(5): Hex(5).
12846  UNIMOD_Hex_5_ = 200001590,
12847 
12848  /// HexNAc(4): HexNAc(4).
12849  UNIMOD_HexNAc_4_ = 200001591,
12850 
12851  /// HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
12853 
12854  /// dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc ---OR--- Hex(2) HexNAc NeuAc.
12856 
12857  /// dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
12859 
12860  /// Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
12862 
12863  /// dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
12865 
12866  /// dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
12868 
12869  /// Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
12871 
12872  /// Hex(4)HexNAc(1): Hex(4) HexNAc.
12874 
12875  /// Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
12877 
12878  /// Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
12880 
12881  /// Hex(5)Phos(1): Hex(5) Phos.
12883 
12884  /// dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
12886 
12887  /// dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
12889 
12890  /// dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
12892 
12893  /// dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
12895 
12896  /// Hex(2)HexNAc(3): Hex(2) HexNAc(3).
12898 
12899  /// Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
12901 
12902  /// dHex(2)Hex(4): DHex(2) Hex(4).
12904 
12905  /// dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
12907 
12908  /// dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
12910 
12911  /// dHex(1)HexNAc(4): DHex HexNAc(4).
12913 
12914  /// Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
12916 
12917  /// dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex NeuAc.
12919 
12920  /// Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
12922 
12923  /// Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
12925 
12926  /// dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
12928 
12929  /// dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
12931 
12932  /// Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
12934 
12935  /// dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
12937 
12938  /// dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
12940 
12941  /// Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
12943 
12944  /// Hex(5)HexNAc(1): Hex(5) HexNAc.
12946 
12947  /// HexNAc(5): HexNAc(5).
12948  UNIMOD_HexNAc_5_ = 200001628,
12949 
12950  /// Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
12952 
12953  /// Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
12955 
12956  /// Hex(5)Phos(3): Hex(5) Phos(3).
12958 
12959  /// Hex(6)Phos(1): Hex(6) Phos.
12961 
12962  /// dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
12964 
12965  /// dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
12967 
12968  /// Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
12970 
12971  /// dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
12973 
12974  /// Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
12976 
12977  /// dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
12979 
12980  /// dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
12982 
12983  /// dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
12985 
12986  /// Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
12988 
12989  /// dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
12991 
12992  /// dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn ---OR--- Hex(2) HexNAc dHex(2) NeuAc.
12994 
12995  /// dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
12997 
12998  /// Hex(2)HexNAc(4): Hex(2) HexNAc(4).
13000 
13001  /// Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
13003 
13004  /// dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
13006 
13007  /// Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
13009 
13010  /// dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
13012 
13013  /// dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
13015 
13016  /// dHex(1)HexNAc(5): DHex HexNAc(5).
13018 
13019  /// dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc ---OR--- Hex(2) HexNAc(2) dHex NeuAc ---OR--- Hex HexNAc(3) dHex Kdn.
13021 
13022  /// dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
13024 
13025  /// Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
13027 
13028  /// dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
13030 
13031  /// dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) NeuAc.
13033 
13034  /// dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
13036 
13037  /// Hex(6)Phos(3): Hex(6) Phos(3).
13039 
13040  /// dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
13042 
13043  /// dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc ---OR--- Hex(2) HexNAc(3) NeuAc.
13045 
13046  /// Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
13048 
13049  /// dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
13051 
13052  /// Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
13054 
13055  /// Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
13057 
13058  /// dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
13060 
13061  /// dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
13063 
13064  /// dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
13066 
13067  /// dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
13069 
13070  /// dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
13072 
13073  /// dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
13075 
13076  /// Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
13078 
13079  /// dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
13081 
13082  /// dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
13084 
13085  /// dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
13087 
13088  /// dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
13090 
13091  /// Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
13093 
13094  /// dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
13096 
13097  /// dHex(2)HexNAc(5): DHex(2) HexNAc(5).
13099 
13100  /// Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
13102 
13103  /// dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc ---OR--- Hex HexNAc(3) dHex(2) Kdn.
13105 
13106  /// dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
13108 
13109  /// dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc ---OR--- Hex(3) HexNAc(2) dHex NeuAc ---OR--- Hex(2) HexNAc(3) dHex Kdn.
13111 
13112  /// Hex(2)HexNAc(5): Hex(2) HexNAc(5).
13114 
13115  /// dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
13117 
13118  /// Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
13120 
13121  /// dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
13123 
13124  /// dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
13126 
13127  /// Hex(7)Phos(3): Hex(7) Phos(3).
13129 
13130  /// dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
13132 
13133  /// Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(3) dHex NeuGc ---OR--- Hex(2) HexNAc(4) Kdn.
13135 
13136  /// dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
13138 
13139  /// Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
13141 
13142  /// dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
13144 
13145  /// Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
13147 
13148  /// dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
13150 
13151  /// dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
13153 
13154  /// dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
13156 
13157  /// Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
13159 
13160  /// dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
13162 
13163  /// dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
13165 
13166  /// dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
13168 
13169  /// Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
13171 
13172  /// dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
13174 
13175  /// dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
13177 
13178  /// dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
13180 
13181  /// dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
13183 
13184  /// Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
13186 
13187  /// Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
13189 
13190  /// Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
13192 
13193  /// dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
13195 
13196  /// dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc ---OR--- Hex(4) HexNAc(2) dHex NeuAc.
13198 
13199  /// dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
13201 
13202  /// Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
13204 
13205  /// dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
13207 
13208  /// dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
13210 
13211  /// Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
13213 
13214  /// dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc ---OR--- Hex(3) HexNAc(3) dHex NeuAc ---OR--- Hex(2) HexNAc(4) dHex Kdn.
13216 
13217  /// dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
13219 
13220  /// Hex(8)Phos(3): Hex(8) Phos(3).
13222 
13223  /// dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
13225 
13226  /// Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
13228 
13229  /// dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
13231 
13232  /// dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
13234 
13235  /// dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
13237 
13238  /// Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
13240 
13241  /// dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
13243 
13244  /// Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
13246 
13247  /// dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn ---OR--- Hex(3) HexNAc(2) dHex(3) NeuAc.
13249 
13250  /// dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
13252 
13253  /// dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
13255 
13256  /// dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
13258 
13259  /// Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
13261 
13262  /// dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc ---OR--- Hex(2) HexNAc(4) dHex(2) Kdn.
13264 
13265  /// dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
13267 
13268  /// Hex(9)Phos(3): Hex(9) Phos(3).
13270 
13271  /// dHex(2)HexNAc(7): DHex(2) HexNAc(7).
13273 
13274  /// Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
13276 
13277  /// Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
13279 
13280  /// dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
13282 
13283  /// dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
13285 
13286  /// dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
13288 
13289  /// Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
13291 
13292  /// dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
13294 
13295  /// dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
13297 
13298  /// Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
13300 
13301  /// Hex(10)Phos(3): Hex(10) Phos(3).
13303 
13304  /// dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
13306 
13307  /// Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
13309 
13310  /// Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
13312 
13313  /// Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
13315 
13316  /// dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
13318 
13319  /// Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
13321 
13322  /// dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
13324 
13325  /// dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
13327 
13328  /// dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
13330 
13331  /// Hex(3)HexNAc(3): Hex(3) HexNAc(3).
13333 
13334  /// dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
13336 
13337  /// dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
13339 
13340  /// dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
13342 
13343  /// dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
13345 
13346  /// dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
13348 
13349  /// Hex(4)HexNAc(3): Hex(4) HexNAc(3).
13351 
13352  /// dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
13354 
13355  /// dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
13357 
13358  /// Hex(3)HexNAc(5): Hex(3) HexNAc(5).
13360 
13361  /// Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc ---OR--- Hex(3) HexNAc(4) Kdn.
13363 
13364  /// dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
13366 
13367  /// dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
13369 
13370  /// Hex(3)HexNAc(6): Hex(3) HexNAc(6).
13372 
13373  /// Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
13375 
13376  /// dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) dHex Pent Me.
13378 
13379  /// Hex(6)HexNAc(4): Hex(6) HexNAc(4).
13381 
13382  /// Hex(5)HexNAc(5): Hex(5) HexNAc(5).
13384 
13385  /// dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
13387 
13388  /// dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc ---OR--- Hex(3) HexNAc(5) dHex Kdn.
13390 
13391  /// dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
13393 
13394  /// dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
13396 
13397  /// dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
13399 
13400  /// Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
13402 
13403  /// Label:13C(2)15N(2): 13C(2) 15N(2).
13405 
13406  /// Xlink:DSS[155]: Ammonium-quenched monolink of DSS/BS3 crosslinker.
13408 
13409  /// NQIGG: SUMOylation by Giardia lamblia.
13410  UNIMOD_NQIGG = 200001799,
13411 
13412  /// Carboxyethylpyrrole: Carboxyethylpyrrole.
13414 
13415  /// Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
13417 
13418  /// GEE: Transamidation of glycine ethyl ester to glutamine.
13419  UNIMOD_GEE = 200001824,
13420 
13421  /// RNPXL: Simulate peptide-RNA conjugates.
13422  UNIMOD_RNPXL = 200001825,
13423 
13424  /// Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
13426 
13427  /// Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
13429 
13430  /// LRGG+methyl: LeumethylArgGlyGly.
13431  UNIMOD_LRGG_methyl = 200001828,
13432 
13433  /// LRGG+dimethyl: LeudimethylArgGlyGly.
13435 
13436  /// Biotin-tyramide: Biotin-Phenol.
13438 
13439  /// Tris: Tris adduct causes 104 Da addition at asparagine-succinimide intermediate.
13440  UNIMOD_Tris = 200001831,
13441 
13442  /// IASD: Iodoacetamide derivative of stilbene (reaction product with thiol).
13443  UNIMOD_IASD = 200001832,
13444 
13445  /// NP40: NP-40 synthetic polymer terminus.
13446  UNIMOD_NP40 = 200001833,
13447 
13448  /// Tween20: Tween 20 synthetic polymer terminus.
13449  UNIMOD_Tween20 = 200001834,
13450 
13451  /// Tween80: Tween 80 synthetic polymer terminus.
13452  UNIMOD_Tween80 = 200001835,
13453 
13454  /// Triton: Triton synthetic polymer terminus.
13455  UNIMOD_Triton = 200001836,
13456 
13457  /// Brij35: Brij 35 synthetic polymer terminus.
13458  UNIMOD_Brij35 = 200001837,
13459 
13460  /// Brij58: Brij 58 synthetic polymer terminus.
13461  UNIMOD_Brij58 = 200001838,
13462 
13463  /// betaFNA: Beta-Funaltrexamine.
13464  UNIMOD_betaFNA = 200001839,
13465 
13466  /// dHex(1)Hex(7)HexNAc(4): Fucosylated biantennary + 2 alphaGal.
13468 
13469  /// Biotin:Thermo-21328: EZ-Link Sulfo-NHS-SS-Biotin.
13471 
13472  /// PhosphoCytidine: Cytidine monophosphate.
13474 
13475  /// AzidoF: Azidophenylalanine.
13476  UNIMOD_AzidoF = 200001845,
13477 
13478  /// Dimethylaminoethyl: Cys alkylation by dimethylaminoethyl halide.
13480 
13481  /// Gluratylation: Glutarylation.
13483 
13484  /// 2-hydroxyisobutyrylation: 2-hydroxyisobutyrylation.
13486 
13487  /// MeMePhosphorothioate: S-Methyl Methyl phosphorothioate.
13489 
13490  /// Cation:Fe[III]: Replacement of 3 protons by iron.
13492 
13493  /// DTT: DTT adduct of cysteine.
13494  UNIMOD_DTT = 200001871,
13495 
13496  /// DYn-2: Sulfenic Acid specific probe.
13497  UNIMOD_DYn_2 = 200001872,
13498 
13499  /// MesitylOxide: Acetone chemical artifact.
13500  UNIMOD_MesitylOxide = 200001873,
13501 
13502  /// methylol: Formaldehyde induced modifications.
13503  UNIMOD_methylol = 200001875,
13504 
13505  /// Xlink:DSS[259]: Tris-quenched monolink of DSS/BS3 crosslinker.
13507 
13508  /// Xlink:DSSO[176]: Water-quenched monolink of DSSO crosslinker.
13510 
13511  /// Xlink:DSSO[175]: Ammonia-quenched monolink of DSSO crosslinker.
13513 
13514  /// Xlink:DSSO[279]: Tris-quenched monolink of DSSO crosslinker.
13516 
13517  /// Xlink:DSSO[54]: Alkene fragment of DSSO crosslinker.
13519 
13520  /// Xlink:DSSO[86]: Thiol fragment of DSSO crosslinker.
13522 
13523  /// Xlink:DSSO[104]: Sulfenic acid fragment of DSSO crosslinker.
13525 
13526  /// Xlink:BuUrBu[111]: BuUr fragment of BuUrBu crosslinker.
13528 
13529  /// Xlink:BuUrBu[85]: Bu fragment of BuUrBu crosslinker.
13531 
13532  /// Xlink:BuUrBu[213]: Ammonia quenched monolink of BuUrBu crosslinker.
13534 
13535  /// Xlink:BuUrBu[214]: Water quenched monolink of BuUrBu crosslinker.
13537 
13538  /// Xlink:BuUrBu[317]: Tris quenched monolink of BuUrBu crosslinker.
13540 
13541  /// Xlink:DSSO[158]: Intact DSSO crosslinker.
13543 
13544  /// Xlink:EGS[226]: Intact EGS cross-linker.
13546 
13547  /// Xlink:DSS[138]: Intact DSS/BS3 crosslinker.
13549 
13550  /// Xlink:BuUrBu[196]: Intact BuUrBu crosslinker.
13552 
13553  /// Xlink:DTBP[172]: Intact DTBP crosslinker.
13555 
13556  /// Xlink:DST[114]: Intact DST crosslinker.
13558 
13559  /// Xlink:DTSSP[174]: Intact DSP/DTSSP crosslinker.
13561 
13562  /// Xlink:SMCC[219]: Intact SMCC cross-link.
13564 
13565  /// Xlink:BS2G[96]: Intact BS2-G crosslinker.
13567 
13568  /// Xlink:BS2G[113]: Ammonium-quenched monolink of BS2-G crosslinker.
13570 
13571  /// Xlink:BS2G[114]: Water-quenched monolink of BS2-G crosslinker.
13573 
13574  /// Xlink:BS2G[217]: Tris-quenched monolink of BS2-G crosslinker.
13576 
13577  /// Cation:Al[III]: Replacement of 3 protons by aluminium.
13579 
13580  /// Xlink:DMP[139]: Ammonia quenched monolink of DMP crosslinker.
13582 
13583  /// Xlink:DMP[122]: Intact DMP crosslinker.
13585 
13586  /// glyoxalAGE: Glyoxal-derived AGE.
13587  UNIMOD_glyoxalAGE = 200001913,
13588 
13589  /// Met->AspSA: Methionine oxidation to aspartic semialdehyde.
13590  UNIMOD_Met__AspSA = 200001914,
13591 
13592  /// Decarboxylation: Decarboxylation.
13594 
13595  /// Aspartylurea: Aspartylurea.
13596  UNIMOD_Aspartylurea = 200001916,
13597 
13598  /// Formylasparagine: In Bachi as Formylaspargine (typo?).
13600 
13601  /// Carbonyl: Aldehyde and ketone modifications.
13602  UNIMOD_Carbonyl = 200001918,
13603 
13604  /// AFB1_Dialdehyde: Adduction of aflatoxin B1 Dialdehyde to lysine.
13606 
13607  /// Pro->HAVA: Proline oxidation to 5-hydroxy-2-aminovaleric acid.
13608  UNIMOD_Pro__HAVA = 200001922,
13609 
13610  /// Delta:H(-4)O(2): Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione.
13612 
13613  /// Delta:H(-4)O(3): Tryptophan oxidation to hydroxy-bis-tryptophandione.
13615 
13616  /// Delta:O(4): Tryptophan oxidation to dihydroxy-N-formaylkynurenine.
13617  UNIMOD_Delta_O_4_ = 200001925,
13618 
13619  /// Delta:H(3)C(3)O(2): Methylglyoxal-derived carboxyethyllysine.
13621 
13622  /// Delta:H(4)C(5)O(1): Methylglyoxal-derived argpyrimidine.
13624 
13625  /// Delta:H(10)C(8)O(1): Crotonaldehyde-derived dimethyl-FDP-lysine.
13627 
13628  /// Delta:H(6)C(7)O(4): Methylglyoxal-derived tetrahydropyrimidine.
13630 
13631  /// Pent(2): Pent(2).
13632  UNIMOD_Pent_2_ = 200001930,
13633 
13634  /// Pent(1)HexNAc(1): Pent HexNAc.
13636 
13637  /// Hex(2)Sulf(1): Hex(2) O(3) S.
13639 
13640  /// Hex(1)Pent(2)Me(1): Hex:1 Pent:2 Me:1.
13642 
13643  /// HexNAc(2)Sulf(1): HexNAc(2) Sulf.
13645 
13646  /// Hex(1)Pent(3)Me(1): Hex Pent(3) Me.
13648 
13649  /// Hex(2)Pent(2): Hex(2) Pent(2).
13651 
13652  /// Hex(2)Pent(2)Me(1): Hex(2) Pent(2) Me.
13654 
13655  /// Hex(4)HexA(1): Hex(4) HexA.
13657 
13658  /// Hex(2)HexNAc(1)Pent(1)HexA(1): Hex(2) HexNAc Pent HexA.
13660 
13661  /// Hex(3)HexNAc(1)HexA(1): Hex(3) HexNAc HexA.
13663 
13664  /// Hex(1)HexNAc(2)dHex(2)Sulf(1): Hex HexNAc(2) dHex(2) Sulf.
13666 
13667  /// HexA(2)HexNAc(3): HexA(2) HexNAc(3).
13669 
13670  /// dHex(1)Hex(4)HexA(1): DHex Hex(4) HexA.
13672 
13673  /// Hex(5)HexA(1): Hex(5) HexA.
13675 
13676  /// Hex(4)HexA(1)HexNAc(1): Hex(4) HexA HexNAc.
13678 
13679  /// dHex(3)Hex(3)HexNAc(1): DHex(3) Hex(3) HexNAc.
13681 
13682  /// Hex(6)HexNAc(1): Hex(6) HexNAc.
13684 
13685  /// Hex(1)HexNAc(4)dHex(1)Sulf(1): Sulf dHex Hex HexNAc(4).
13687 
13688  /// dHex(1)Hex(2)HexNAc(1)NeuAc(2): DHex Hex(2) HexNAc NeuAc(2).
13690 
13691  /// dHex(3)Hex(3)HexNAc(2): DHex(3) Hex(3) HexNAc(2).
13693 
13694  /// dHex(2)Hex(1)HexNAc(4)Sulf(1): DHex(2) Hex HexNAc(4) Sulf.
13696 
13697  /// dHex(1)Hex(2)HexNAc(4)Sulf(2): DHex Hex(2) HexNAc(4) Sulf(2).
13699 
13700  /// Hex(9): Hex(9).
13701  UNIMOD_Hex_9_ = 200001953,
13702 
13703  /// dHex(2)Hex(3)HexNAc(3)Sulf(1): Sulf dHex(2) Hex(3) HexNAc(3).
13705 
13706  /// dHex(2)Hex(5)HexNAc(2)Me(1): Me dHex(2) Hex(5) HexNAc(2).
13708 
13709  /// dHex(2)Hex(2)HexNAc(4)Sulf(2): Sulf(2) dHex(2) Hex(2) HexNAc(4).
13711 
13712  /// Hex(9)HexNAc(1): Hex(9) HexNAc.
13714 
13715  /// dHex(3)Hex(2)HexNAc(4)Sulf(2): DHex(3) Hex(2) HexNAc(4) Sulf(2).
13717 
13718  /// Hex(4)HexNAc(4)NeuGc(1): Hex(4) HexNAc(4) NeuGc.
13720 
13721  /// dHex(4)Hex(3)HexNAc(2)NeuAc(1): DHex(4) Hex(3) HexNAc(2) NeuAc(1).
13723 
13724  /// Hex(3)HexNAc(5)NeuAc(1): Hex(3) HexNAc(5) NeuAc(1).
13726 
13727  /// Hex(10)HexNAc(1): Hex(10) HexNAc(1).
13729 
13730  /// dHex(1)Hex(8)HexNAc(2): DHex Hex(8) HexNAc(2).
13732 
13733  /// Hex(3)HexNAc(4)NeuAc(2): Hex(3) HexNAc(4) NeuAc(2).
13735 
13736  /// dHex(2)Hex(3)HexNAc(4)NeuAc(1): DHex(2) Hex(3) HexNAc(4) NeuAc.
13738 
13739  /// dHex(2)Hex(2)HexNAc(6)Sulf(1): DHex(2) Hex(2) HexNAc(6) Sulf.
13741 
13742  /// Hex(5)HexNAc(4)NeuAc(1)Ac(1): Hex(5) HexNAc(4) NeuAc Ac.
13744 
13745  /// Hex(3)HexNAc(3)NeuAc(3): Hex(3) HexNAc(3) NeuAc(3).
13747 
13748  /// Hex(5)HexNAc(4)NeuAc(1)Ac(2): Hex(5) HexNAc(4) NeuAc Ac(2).
13750 
13751  /// Unknown:162: Unidentified modification of 162.1258 found in open search.
13752  UNIMOD_Unknown_162 = 200001970,
13753 
13754  /// Unknown:177: Unidentified modification of 176.7462 found in open search.
13755  UNIMOD_Unknown_177 = 200001971,
13756 
13757  /// Unknown:210: Unidentified modification of 210.1616 found in open search.
13758  UNIMOD_Unknown_210 = 200001972,
13759 
13760  /// Unknown:216: Unidentified modification of 216.1002 found in open search.
13761  UNIMOD_Unknown_216 = 200001973,
13762 
13763  /// Unknown:234: Unidentified modification of 234.0742 found in open search.
13764  UNIMOD_Unknown_234 = 200001974,
13765 
13766  /// Unknown:248: Unidentified modification of 248.1986 found in open search.
13767  UNIMOD_Unknown_248 = 200001975,
13768 
13769  /// Unknown:250: Unidentified modification of 249.981 found in open search.
13770  UNIMOD_Unknown_250 = 200001976,
13771 
13772  /// Unknown:302: Unidentified modification of 301.9864 found in open search.
13773  UNIMOD_Unknown_302 = 200001977,
13774 
13775  /// Unknown:306: Unidentified modification of 306.0952 found in open search.
13776  UNIMOD_Unknown_306 = 200001978,
13777 
13778  /// Unknown:420: Unidentified modification of 420.0506 found in open search.
13779  UNIMOD_Unknown_420 = 200001979,
13780 
13781  /// Diethylphosphothione: O-diethylphosphothione.
13783 
13784  /// Dimethylphosphothione: O-dimethylphosphothione.
13786 
13787  /// monomethylphosphothione: O-methylphosphothione.
13789 
13790  /// CIGG: Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly.
13791  UNIMOD_CIGG = 200001990,
13792 
13793  /// GNLLFLACYCIGG: Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Tyr-Cys-Ile-Gly-Gly.
13795 
13796  /// serotonylation: 5-glutamyl serotonin.
13798 
13799  /// TMPP-Ac:13C(9): Heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
13801 
13802  /// unit: A unit of measurement is a standardized quantity of a physical quality.
13803  UO_unit = 300000000,
13804 
13805  /// length unit: A unit which is a standard measure of the distance between two points.
13806  UO_length_unit = 300000001,
13807 
13808  /// mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
13809  UO_mass_unit = 300000002,
13810 
13811  /// time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
13812  UO_time_unit = 300000003,
13813 
13814  /// electric current unit: A unit which is a standard measure of the flow of electric charge.
13816 
13817  /// temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
13818  UO_temperature_unit = 300000005,
13819 
13820  /// substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.
13821  UO_substance_unit = 300000006,
13822 
13823  /// luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
13825 
13826  /// meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
13827  UO_meter = 300000008,
13828 
13829  /// kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
13830  UO_kilogram = 300000009,
13831 
13832  /// second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
13833  UO_second = 300000010,
13834 
13835  /// ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
13836  UO_ampere = 300000011,
13837 
13838  /// kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
13839  UO_kelvin = 300000012,
13840 
13841  /// mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
13842  UO_mole = 300000013,
13843 
13844  /// candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
13845  UO_candela = 300000014,
13846 
13847  /// centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
13848  UO_centimeter = 300000015,
13849 
13850  /// millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
13851  UO_millimeter = 300000016,
13852 
13853  /// micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
13854  UO_micrometer = 300000017,
13855 
13856  /// nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
13857  UO_nanometer = 300000018,
13858 
13859  /// angstrom: A length unit which is equal to 10 [-10] m.
13860  UO_angstrom = 300000019,
13861 
13862  /// picometer: A length unit which is equal to 10^[-12] m.
13863  UO_picometer = 300000020,
13864 
13865  /// gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
13866  UO_gram = 300000021,
13867 
13868  /// milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
13869  UO_milligram = 300000022,
13870 
13871  /// microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
13872  UO_microgram = 300000023,
13873 
13874  /// nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
13875  UO_nanogram = 300000024,
13876 
13877  /// picogram: A mass unit which is equal to 10^[-12] g.
13878  UO_picogram = 300000025,
13879 
13880  /// femtogram: A mass unit which is equal to 10^[-15] g.
13881  UO_femtogram = 300000026,
13882 
13883  /// degree Celsius: A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K.
13884  UO_degree_Celsius = 300000027,
13885 
13886  /// millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
13887  UO_millisecond = 300000028,
13888 
13889  /// microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
13890  UO_microsecond = 300000029,
13891 
13892  /// picosecond: A time unit which is equal to 10^[-12] s.
13893  UO_picosecond = 300000030,
13894 
13895  /// minute: A time unit which is equal to 60 seconds.
13896  UO_minute = 300000031,
13897 
13898  /// hour: A time unit which is equal to 3600 seconds or 60 minutes.
13899  UO_hour = 300000032,
13900 
13901  /// day: A time unit which is equal to 24 hours.
13902  UO_day = 300000033,
13903 
13904  /// week: A time unit which is equal to 7 days.
13905  UO_week = 300000034,
13906 
13907  /// month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
13908  UO_month = 300000035,
13909 
13910  /// year: A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days.
13911  UO_year = 300000036,
13912 
13913  /// milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.
13914  UO_milliampere = 300000037,
13915 
13916  /// microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.
13917  UO_microampere = 300000038,
13918 
13919  /// micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
13920  UO_micromole = 300000039,
13921 
13922  /// millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
13923  UO_millimole = 300000040,
13924 
13925  /// nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
13926  UO_nanomole = 300000041,
13927 
13928  /// picomole: A substance unit equal to 10^[-12] mol.
13929  UO_picomole = 300000042,
13930 
13931  /// femtomole: A substance unit equal to 10^[-15] mol.
13932  UO_femtomole = 300000043,
13933 
13934  /// attomole: A substance unit equal to 10^[-18] mol.
13935  UO_attomole = 300000044,
13936 
13937  /// base unit: A unit which is one of a particular measure to which all measures of that type can be related.
13938  UO_base_unit = 300000045,
13939 
13940  /// prefix:
13941  UO_prefix = 300000046,
13942 
13943  /// area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
13944  UO_area_unit = 300000047,
13945 
13946  /// acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.
13948 
13949  /// angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.
13951 
13952  /// angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.
13954 
13955  /// concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
13957 
13958  /// mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.
13960 
13961  /// luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.
13962  UO_luminance_unit = 300000053,
13963 
13964  /// area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.
13966 
13967  /// molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
13968  UO_molar_mass_unit = 300000055,
13969 
13970  /// molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
13972 
13973  /// momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.
13974  UO_momentum_unit = 300000057,
13975 
13976  /// rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.
13978 
13979  /// specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).
13981 
13982  /// speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.
13984 
13985  /// unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
13986  UO_unit_of_molarity = 300000061,
13987 
13988  /// molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
13989  UO_molar = 300000062,
13990 
13991  /// millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
13992  UO_millimolar = 300000063,
13993 
13994  /// micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
13995  UO_micromolar = 300000064,
13996 
13997  /// nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
13998  UO_nanomolar = 300000065,
13999 
14000  /// picomolar: A unit of molarity which is equal to 10^[-12] M.
14001  UO_picomolar = 300000066,
14002 
14003  /// unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.
14004  UO_unit_of_molality = 300000067,
14005 
14006  /// molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).
14007  UO_molal = 300000068,
14008 
14009  /// millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
14010  UO_millimolal = 300000069,
14011 
14012  /// micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
14013  UO_micromolal = 300000070,
14014 
14015  /// nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
14016  UO_nanomolal = 300000071,
14017 
14018  /// picomolal: A molality unit which is equal to 10^[-12] m.
14019  UO_picomolal = 300000072,
14020 
14021  /// femtomolar: A unit of molarity which is equal to 10^[-15] M.
14022  UO_femtomolar = 300000073,
14023 
14024  /// unit of normality: A unit of concentration which highlights the chemical nature of salts.
14026 
14027  /// normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.
14028  UO_normal = 300000075,
14029 
14030  /// mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.
14031  UO_mole_fraction = 300000076,
14032 
14033  /// meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.
14035 
14036  /// radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.
14038 
14039  /// radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).
14041 
14042  /// square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.
14043  UO_square_meter = 300000080,
14044 
14045  /// square centimeter: An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[2].
14047 
14048  /// square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
14050 
14051  /// kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.
14053 
14054  /// gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.
14056 
14057  /// candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.
14059 
14060  /// kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.
14062 
14063  /// kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.
14065 
14066  /// gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.
14067  UO_gram_per_mole = 300000088,
14068 
14069  /// cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.
14071 
14072  /// cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.
14074 
14075  /// kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.
14077 
14078  /// turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.
14079  UO_turns_per_second = 300000092,
14080 
14081  /// cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.
14083 
14084  /// meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.
14085  UO_meter_per_second = 300000094,
14086 
14087  /// volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
14088  UO_volume_unit = 300000095,
14089 
14090  /// cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.
14091  UO_cubic_meter = 300000096,
14092 
14093  /// cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
14094  UO_cubic_centimeter = 300000097,
14095 
14096  /// milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
14097  UO_milliliter = 300000098,
14098 
14099  /// liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
14100  UO_liter = 300000099,
14101 
14102  /// cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
14103  UO_cubic_decimeter = 300000100,
14104 
14105  /// microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
14106  UO_microliter = 300000101,
14107 
14108  /// nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
14109  UO_nanoliter = 300000102,
14110 
14111  /// picoliter: A volume unit which is equal to 10^[-12] L.
14112  UO_picoliter = 300000103,
14113 
14114  /// femtoliter: A volume unit which is equal to 10^[-15] L.
14115  UO_femtoliter = 300000104,
14116 
14117  /// frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.
14118  UO_frequency_unit = 300000105,
14119 
14120  /// hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
14121  UO_hertz = 300000106,
14122 
14123  /// force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
14124  UO_force_unit = 300000107,
14125 
14126  /// newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.
14127  UO_newton = 300000108,
14128 
14129  /// pressure unit: A unit which is a standard measure of the force applied to a given area.
14130  UO_pressure_unit = 300000109,
14131 
14132  /// pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].
14133  UO_pascal = 300000110,
14134 
14135  /// energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).
14136  UO_energy_unit = 300000111,
14137 
14138  /// joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.
14139  UO_joule = 300000112,
14140 
14141  /// power unit: A unit which is a standard measure power or the rate of doing work.
14142  UO_power_unit = 300000113,
14143 
14144  /// watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.
14145  UO_watt = 300000114,
14146 
14147  /// illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
14148  UO_illuminance_unit = 300000115,
14149 
14150  /// lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].
14151  UO_lux = 300000116,
14152 
14153  /// luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
14155 
14156  /// lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.
14157  UO_lumen = 300000118,
14158 
14159  /// catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.
14161 
14162  /// katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.
14163  UO_katal = 300000120,
14164 
14165  /// angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.
14166  UO_angle_unit = 300000121,
14167 
14168  /// plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.
14169  UO_plane_angle_unit = 300000122,
14170 
14171  /// radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.
14172  UO_radian = 300000123,
14173 
14174  /// solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.
14175  UO_solid_angle_unit = 300000124,
14176 
14177  /// steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.
14178  UO_steradian = 300000125,
14179 
14180  /// radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.
14181  UO_radiation_unit = 300000127,
14182 
14183  /// activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.
14185 
14186  /// absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.
14188 
14189  /// dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.
14191 
14192  /// exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.
14193  UO_exposure_unit = 300000131,
14194 
14195  /// becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).
14196  UO_becquerel = 300000132,
14197 
14198  /// curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).
14199  UO_curie = 300000133,
14200 
14201  /// gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
14202  UO_gray = 300000134,
14203 
14204  /// rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
14205  UO_rad = 300000135,
14206 
14207  /// roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.
14208  UO_roentgen = 300000136,
14209 
14210  /// sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
14211  UO_sievert = 300000137,
14212 
14213  /// millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
14214  UO_millisievert = 300000138,
14215 
14216  /// microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
14217  UO_microsievert = 300000139,
14218 
14219  /// Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.
14221 
14222  /// microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
14223  UO_microgray = 300000141,
14224 
14225  /// milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
14226  UO_milligray = 300000142,
14227 
14228  /// nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.
14229  UO_nanogray = 300000143,
14230 
14231  /// nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.
14232  UO_nanosievert = 300000144,
14233 
14234  /// millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.
14235  UO_millicurie = 300000145,
14236 
14237  /// microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.
14238  UO_microcurie = 300000146,
14239 
14240  /// disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.
14242 
14243  /// counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.
14245 
14246  /// nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
14247  UO_nanosecond = 300000150,
14248 
14249  /// century: A time unit which is equal to 100 years.
14250  UO_century = 300000151,
14251 
14252  /// half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.
14253  UO_half_life = 300000152,
14254 
14255  /// foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.
14256  UO_foot_candle = 300000153,
14257 
14258  /// irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.
14259  UO_irradiance_unit = 300000154,
14260 
14261  /// watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.
14263 
14264  /// einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.
14266 
14267  /// light unit: A unit which is a standard measure of the intensity of light.
14268  UO_light_unit = 300000157,
14269 
14270  /// watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.
14272 
14273  /// radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.
14275 
14276  /// microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].
14278 
14279  /// radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.
14280  UO_radiance_unit = 300000161,
14281 
14282  /// watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.
14284 
14285  /// mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
14286  UO_mass_percentage = 300000163,
14287 
14288  /// mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
14290 
14291  /// volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
14293 
14294  /// parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.
14296 
14297  /// parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.
14299 
14300  /// parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.
14302 
14303  /// parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].
14305 
14306  /// parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].
14308 
14309  /// parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].
14311 
14312  /// parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].
14314 
14315  /// gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.
14317 
14318  /// kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.
14320 
14321  /// gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
14322  UO_gram_per_liter = 300000175,
14323 
14324  /// milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
14326 
14327  /// unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.
14329 
14330  /// unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.
14332 
14333  /// unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.
14334  UO_unit_per_liter = 300000179,
14335 
14336  /// mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).
14338 
14339  /// enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.
14340  UO_enzyme_unit = 300000181,
14341 
14342  /// density unit: A unit which is a standard measure of the influence exerted by some mass.
14343  UO_density_unit = 300000182,
14344 
14345  /// linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.
14347 
14348  /// kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.
14350 
14351  /// degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
14352  UO_degree = 300000185,
14353 
14354  /// dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.
14356 
14357  /// percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
14358  UO_percent = 300000187,
14359 
14360  /// pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.
14361  UO_pi = 300000188,
14362 
14363  /// count unit: A dimensionless unit which denotes a simple count of things.
14364  UO_count_unit = 300000189,
14365 
14366  /// ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
14367  UO_ratio_300000190 = 300000190,
14368 
14369  /// fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).
14370  UO_fraction = 300000191,
14371 
14372  /// molecule count: A dimensionless count unit which denotes the number of molecules.
14373  UO_molecule_count = 300000192,
14374 
14375  /// purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
14377 
14378  /// confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).
14380 
14381  /// degree Fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
14383 
14384  /// pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
14385  UO_pH = 300000196,
14386 
14387  /// liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.
14389 
14390  /// milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.
14392 
14393  /// microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.
14395 
14396  /// cell concentration unit: A concentration unit which denotes the average cell number in a given volume.
14398 
14399  /// cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.
14401 
14402  /// catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.
14404 
14405  /// katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.
14407 
14408  /// katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.
14409  UO_katal_per_liter = 300000204,
14410 
14411  /// volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.
14413 
14414  /// milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.
14416 
14417  /// milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
14419 
14420  /// gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
14422 
14423  /// deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
14424  UO_deciliter = 300000209,
14425 
14426  /// colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
14428 
14429  /// plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.
14431 
14432  /// colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.
14434 
14435  /// colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.
14437 
14438  /// plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.
14440 
14441  /// plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.
14443 
14444  /// disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.
14446 
14447  /// electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.
14449 
14450  /// volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
14451  UO_volt = 300000218,
14452 
14453  /// electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.
14454  UO_electric_charge = 300000219,
14455 
14456  /// coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.
14457  UO_coulomb = 300000220,
14458 
14459  /// dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
14460  UO_dalton = 300000221,
14461 
14462  /// kilodalton: A mass unit which is equal to one thousand daltons.
14463  UO_kilodalton = 300000222,
14464 
14465  /// watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.
14466  UO_watt_hour = 300000223,
14467 
14468  /// kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
14469  UO_kilowatt_hour = 300000224,
14470 
14471  /// magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.
14473 
14474  /// weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.
14475  UO_weber = 300000226,
14476 
14477  /// magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
14479 
14480  /// tesla: A magnetic flux density unit which is equal to one weber per square meter.
14481  UO_tesla = 300000228,
14482 
14483  /// volt-hour: A magnetic flux unit which is equal to 3600 Wb.
14484  UO_volt_hour = 300000229,
14485 
14486  /// kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
14487  UO_kilovolt_hour = 300000230,
14488 
14489  /// information unit: A unit which is a standard measure of the amount of information.
14490  UO_information_unit = 300000231,
14491 
14492  /// bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).
14493  UO_bit = 300000232,
14494 
14495  /// byte: An information unit which is equal to 8 bits.
14496  UO_byte = 300000233,
14497 
14498  /// kilobyte: An information unit which is equal to 1000 bytes.
14499  UO_kilobyte = 300000234,
14500 
14501  /// megabyte: An information unit which is equal to 1000 kB.
14502  UO_megabyte = 300000235,
14503 
14504  /// image resolution unit: An information unit which is a standard measure of the detail an image holds.
14506 
14507  /// chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.
14509 
14510  /// dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.
14512 
14513  /// spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.
14515 
14516  /// dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.
14517  UO_dots_per_inch = 300000240,
14518 
14519  /// micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
14520  UO_micron_pixel = 300000241,
14521 
14522  /// pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.
14523  UO_pixels_per_inch = 300000242,
14524 
14525  /// pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.
14527 
14528  /// base pair: A count unit which contains one nucleotide.
14529  UO_base_pair = 300000244,
14530 
14531  /// kibibyte: An information unit which is equal to 1024 B.
14532  UO_kibibyte = 300000245,
14533 
14534  /// mebibyte: An information unit which is equal to 1024 KiB.
14535  UO_mebibyte = 300000246,
14536 
14537  /// millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.
14538  UO_millivolt = 300000247,
14539 
14540  /// kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
14541  UO_kilovolt = 300000248,
14542 
14543  /// microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.
14544  UO_microvolt = 300000249,
14545 
14546  /// nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.
14547  UO_nanovolt = 300000250,
14548 
14549  /// picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.
14550  UO_picovolt = 300000251,
14551 
14552  /// megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
14553  UO_megavolt = 300000252,
14554 
14555  /// surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.
14557 
14558  /// newton per meter: A surface tension unit which is equal to one newton per meter.
14559  UO_newton_per_meter = 300000254,
14560 
14561  /// dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
14562  UO_dyne_per_cm = 300000255,
14563 
14564  /// viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
14565  UO_viscosity_unit = 300000256,
14566 
14567  /// pascal second: A viscosity unit which is equal to one pascale per second.
14568  UO_pascal_second = 300000257,
14569 
14570  /// poise: A viscosity unit which is equal to one dyne second per square centimeter.
14571  UO_poise = 300000258,
14572 
14573  /// decibel: A ratio unit which is an indicator of sound power per unit area.
14574  UO_decibel = 300000259,
14575 
14576  /// effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.
14578 
14579  /// conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.
14580  UO_conduction_unit = 300000261,
14581 
14582  /// electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).
14584 
14585  /// heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.
14587 
14588  /// siemens: An electrical conduction unit which is equal to A/V.
14589  UO_siemens = 300000264,
14590 
14591  /// watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
14593 
14594  /// electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.
14595  UO_electronvolt = 300000266,
14596 
14597  /// electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.
14599 
14600  /// volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.
14601  UO_volt_per_meter = 300000268,
14602 
14603  /// absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.
14604  UO_absorbance_unit = 300000269,
14605 
14606  /// volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
14608 
14609  /// microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
14611 
14612  /// millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.
14614 
14615  /// milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.
14617 
14618  /// microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.
14620 
14621  /// nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.
14623 
14624  /// amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.
14626 
14627  /// ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.
14628  UO_ug_disk = 300000277,
14629 
14630  /// nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.
14631  UO_nmole_disk = 300000278,
14632 
14633  /// milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.
14635 
14636  /// rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
14637  UO_rate_unit = 300000280,
14638 
14639  /// count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
14641 
14642  /// count per molar second: A rate unit which is equal to one over one molar second.
14644 
14645  /// kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares.
14647 
14648  /// count per nanomolar: A rate unit which is equal to one over one nanomolar.
14650 
14651  /// count per molar: A rate unit which is equal to one over one molar.
14652  UO_count_per_molar = 300000285,
14653 
14654  /// yotta: A prefix in the metric system denoting a factor of ten to the power of 24.
14655  UO_yotta = 300000286,
14656 
14657  /// hecto: A prefix in the metric system denoting a factor of one hundred.
14658  UO_hecto = 300000287,
14659 
14660  /// zetta: A prefix in the metric system denoting a factor of ten to the power of 21.
14661  UO_zetta = 300000288,
14662 
14663  /// exa: A prefix in the metric system denoting a factor of ten to the power of 18.
14664  UO_exa = 300000289,
14665 
14666  /// peta: A prefix in the metric system denoting a factor of ten to the power of 15.
14667  UO_peta = 300000290,
14668 
14669  /// tera: A prefix in the metric system denoting a factor of ten to the power of 12.
14670  UO_tera = 300000291,
14671 
14672  /// giga: A prefix in the metric system denoting a factor of ten to the power of 9.
14673  UO_giga = 300000292,
14674 
14675  /// mega: A prefix in the metric system denoting a factor of million.
14676  UO_mega = 300000293,
14677 
14678  /// kilo: A prefix in the metric system denoting a factor of one thousand.
14679  UO_kilo = 300000294,
14680 
14681  /// deca: A prefix in the metric system denoting a factor of ten.
14682  UO_deca = 300000295,
14683 
14684  /// deci: A prefix in the metric system denoting a factor of one tenth.
14685  UO_deci = 300000296,
14686 
14687  /// milli: A prefix in the metric system denoting a factor of one thousand.
14688  UO_milli_300000297 = 300000297,
14689 
14690  /// centi: A prefix in the metric system denoting a factor of one hundred.
14691  UO_centi = 300000298,
14692 
14693  /// micro: A prefix in the metric system denoting a factor of 10 to the power of -6.
14694  UO_micro = 300000299,
14695 
14696  /// nano: A prefix in the metric system denoting a factor of 10 to the power of -9.
14697  UO_nano = 300000300,
14698 
14699  /// microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
14701 
14702  /// pico: A prefix in the metric system denoting a factor of 10 to the power of -12.
14703  UO_pico = 300000302,
14704 
14705  /// femto: A prefix in the metric system denoting a factor of 10 to the power of -15.
14706  UO_femto = 300000303,
14707 
14708  /// atto: A prefix in the metric system denoting a factor of 10 to the power of -18.
14709  UO_atto = 300000304,
14710 
14711  /// zepto: A prefix in the metric system denoting a factor of 10 to the power of -21.
14712  UO_zepto = 300000305,
14713 
14714  /// yocto: A prefix in the metric system denoting a factor of 10 to the power of -24.
14715  UO_yocto = 300000306,
14716 
14717  /// dose unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered to a recipient subject, expressed in terms of the size of the subject.
14718  UO_dose_unit = 300000307,
14719 
14720  /// milligram per kilogram: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject.
14722 
14723  /// milligram per square meter: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substance per square meter of surface area of the recipient subject.
14725 
14726  /// dosage unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutical substance administered over time to a recipient subject, expressed in terms of the size of the subject.
14727  UO_dosage_unit = 300000310,
14728 
14729  /// milligram per kilogram per day: A dosage unit which is equal to 1 milligram per day of a toxic or pharmaceutical substance per kilogram body weight of the recipient subject.
14731 
14732  /// relative light unit: A derived unit which is a measure of relative light intensity, as typically measured by a luminometer, spectrophotometer, or fluorimeter in biological research applications.
14734 
14735  /// relative luminescence unit: A relative light unit which is a measure of relative luminescence intensity.
14737 
14738  /// relative fluorescence unit: A relative light unit which is a measure of relative fluorescence intensity.
14740 
14741  /// turbidity unit: A unit used to indicate the clarity of water or other solutions or suspensions, as measured by the ability of the solution or suspension to scatter light of a defined wavelength range.
14742  UO_turbidity_unit = 300000315,
14743 
14744  /// cells per microliter: A unit of cell concentration which is equal to one cell in a volume of 1 microliter.
14746 
14747  /// cells per well: A unit of cell concentration which is equal to 1 cell in a well or discrete container of arbitrary volume.
14748  UO_cells_per_well = 300000317,
14749 
14750  /// formazin nephelometric unit: 1000 formazin turbidity units (FNU) on the empirical formazin turbidity scale represents reflectance of insol. reaction products of 0.0725 g hydrazine sulfate with 0.7250 g hexamethylenetetramine diluted to 1 L.
14752 
14753  /// radioactivity concentration: A concentration unit which is a standard measure of the amount of radioactivity in a given volume.
14755 
14756  /// curie per liter: A unit of radioactivity concentration which is equal to one curie in a volume of 1 liter.
14757  UO_curie_per_liter = 300000320,
14758 
14759  /// microcurie per milliliter: A unit of radioactivity concentration which is equal to one micro curie in a volume of 1 liter.
14761 
14762  /// fold dilution: A unit that is the ratio of concentration of two solutions of interest, typically with one solution derived from the other by the addition of solvent.
14763  UO_fold_dilution = 300000322,
14764 
14765  /// ton per hectare: An area density unit which is equal to the mass of an object in tons divided by the surface area in hectares.
14766  UO_ton_per_hectare = 300000323,
14767 
14768  /// square angstrom: An area unit which is equal to an area enclosed by a square with sides each 1 angstrom long.
14769  UO_square_angstrom = 300000324,
14770 
14771  /// megaHertz: A frequency unit which is equal to one million hertz or 10^[6] V.
14772  UO_megaHertz = 300000325,
14773 
14774  /// centiMorgan: A unit used to express distances on a genetic map. In genetic mapping, distances between markers are determined by measuring the rate of meoitic recombination between them, which increases proportionately with the distance separating them. A cM is defined as the length of an interval in which there is a 1% probability of recombination. On the average, 1 cM is roughly equivalent to 1 megabase (Mb) of DNA, although this can vary widely due to hot and cold spots of recombination.
14775  UO_centiMorgan = 300000326,
14776 
14777  /// centiRay: A unit of genetic map distance defined corresponding to an interval in which there is a 1% probability of X-irradiation induced breakage. To be completely specified, the unit must be qualified by the radiation in dosage in rads (e.g. cR8000), because this determines the actual breakage probability.
14778  UO_centiRay = 300000327,
14779 
14780  /// kilobasepair: A unit equal to one thousand base pairs.
14781  UO_kilobasepair = 300000328,
14782 
14783  /// megabasepair: A unit equal to one million base pairs
14784  UO_megabasepair = 300000329,
14785 
14786  /// gigabasepair: A unit equal to one billion base pairs.
14787  UO_gigabasepair = 300000330,
14788 
14789  /// gigabyte: An information unit which is equal to 1000000000 bytes.
14790  UO_gigabyte = 300000331,
14791 
14792  /// terabyte: An information unit which is equal to 1000 gigabytes.
14793  UO_terabyte = 300000332,
14794 
14795  /// square micrometer: An area unit which is equal to an area enclosed by a square with sides each 1 micrometer long.
14797 
14798  /// millisiemens: An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] siemens.
14799  UO_millisiemens = 300010002,
14800 
14801  /// micromole per litre: A specific concentration unit which is equal to 1 micromole in a given volume of one thousandth of a cubic meter.
14803 
14804  /// micromole per kilogram: A specific concentration unit which is equal to 1 micromole of a given substance per kilogram of solvent.
14806 
14807  /// millimeters per day: A speed/velocity unit which is equal to the speed of an object traveling 1 millimeter distance in one day.
14809 
14810  /// ratio: A dimensionless ratio unit which, given a pair of quantities a and b, for which b is a multiple of a, denotes b by giving the multiplier (coefficient) c for a to result in b.
14811  UO_ratio_300010006 = 300010006,
14812 
14813  /// volt-second per square centimeter: An electrical mobility unit which is equal to one volt second per square centimeter.
14815 
14816  /// kilometer per hour: A speed/velocity unit which is equal to the speed of an object traveling 1 kilometer distance in one hour.
14818 
14819  /// milli: A mass unit which is equal to 1/12 the mass of 12C
14820  UO_milli_300010009 = 300010009,
14821 
14822  /// hectare: An area unit which is equal to an area of 10,000 square meters. Equivalent to 2.471 acres.
14823  UO_hectare = 300010010,
14824 
14825  /// inch: A length unit which is equal to 0.0254 metres.
14826  UO_inch = 300010011,
14827 
14828  /// thou: A length unit which is equal to 0.0254 millimetres.
14829  UO_thou = 300010012,
14830 
14831  /// foot: A length unit which is equal to 0.3048 metres, or 12 inches.
14832  UO_foot = 300010013,
14833 
14834  /// yard: A length unit which is equal to 0.9144 metres, or 3 feet.
14835  UO_yard = 300010014,
14836 
14837  /// chain: A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards.
14838  UO_chain = 300010015,
14839 
14840  /// furlong: A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains.
14841  UO_furlong = 300010016,
14842 
14843  /// mile: A length unit which is equal to 1,609.344 metres, or 8 furlongs.
14844  UO_mile = 300010017,
14845 
14846  /// league: A length unit which is equal to 3 miles, or 4,828.032 metres
14847  UO_league = 300010018,
14848 
14849  /// maritime length unit: A maritime length unit is one used primarily at sea.
14851 
14852  /// fathom: A maritime length unit which is equal to 6.08 feet, or 1.853184 metres
14853  UO_fathom = 300010020,
14854 
14855  /// cable: A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres
14856  UO_cable = 300010021,
14857 
14858  /// nautical mile: A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,853.184 metres
14859  UO_nautical_mile = 300010022,
14860 
14861  /// perch: An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod.
14862  UO_perch = 300010023,
14863 
14864  /// rood: An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,011.714,1056 square meters, or 40 square rods.
14865  UO_rood = 300010024,
14866 
14867  /// acre: An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,046.856,4224 square meters, or 43,500 square feet.
14868  UO_acre = 300010025,
14869 
14870  /// fluid ounce: An imperial volume unit which is equivalent to 28.413,0625 millilitres.
14871  UO_fluid_ounce = 300010026,
14872 
14873  /// gill: An imperial volume unit which is equivalent to 142.065,3125 millilitres.
14874  UO_gill = 300010027,
14875 
14876  /// pint: An imperial volume unit which is equivalent to 568.261,25 millilitres.
14877  UO_pint = 300010028,
14878 
14879  /// quart: An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints.
14880  UO_quart = 300010029,
14881 
14882  /// gallon: An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints.
14883  UO_gallon = 300010030,
14884 
14885  /// grain: An imperial mass unit which is equivalent to 64.798,91 milligrams.
14886  UO_grain = 300010031,
14887 
14888  /// drachm: An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound.
14889  UO_drachm = 300010032,
14890 
14891  /// ounce: An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound.
14892  UO_ounce = 300010033,
14893 
14894  /// pound: An imperial mass unit which is equivalent to 453.592,37 grams.
14895  UO_pound = 300010034,
14896 
14897  /// stone: An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds.
14898  UO_stone = 300010035,
14899 
14900  /// quarter: An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds.
14901  UO_quarter = 300010036,
14902 
14903  /// hundredweight: An imperial mass unit which is equivalent to 50.802,345,44 kilograms, 112 pounds, or 8 stone.
14904  UO_hundredweight = 300010037,
14905 
14906  /// ton: An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds.
14907  UO_ton = 300010038,
14908 
14909  /// slug: An imperial gravitational unit which is equivalent to a mass that accelerates by 1ft/s² when a force of one pound (lbf) is exerted on it.
14910  UO_slug = 300010039
14911 }; // enum CVID
14912 
14913 
14914 /// Information about an ontology or CV source and a short 'lookup' tag to refer to.
14916 {
14917  /// the short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).
14918  std::string id;
14919 
14920  /// the URI for the resource.
14921  std::string URI;
14922 
14923  /// the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
14924  std::string fullName;
14925 
14926  /// the version of the CV from which the referred-to terms are drawn.
14927  std::string version;
14928 
14929  /// returns true iff id, URI, fullName, and version are all pairwise equal
14930  bool operator==(const CV& that) const;
14931 
14932  /// returns ture iff id, URI, fullName, and version are all empty
14933  bool empty() const;
14934 };
14935 
14936 
14937 /// returns a CV object for the specified namespace (prefix);
14938 /// currently supported namespaces are: MS UO
14939 PWIZ_API_DECL const CV& cv(const std::string& prefix);
14940 
14941 
14942 /// structure for holding CV term info
14944 {
14945  CVID cvid;
14946  std::string id;
14947  std::string name;
14948  std::string def;
14950 
14951  typedef std::vector<CVID> id_list;
14954  std::multimap<std::string, CVID> otherRelations;
14955  std::vector<std::string> exactSynonyms;
14956  std::multimap<std::string, std::string> propertyValues;
14957 
14958  CVTermInfo() : cvid((CVID)-1) {}
14959  const std::string& shortName() const;
14960  std::string prefix() const;
14961 };
14962 
14963 
14964 /// returns CV term info for the specified CVID
14966 
14967 
14968 /// returns CV term info for the specified id (accession number)
14969 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const char* id);
14970 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const std::string& id);
14971 
14972 
14973 /// returns true iff child IsA parent in the CV
14974 PWIZ_API_DECL bool cvIsA(CVID child, CVID parent);
14975 
14976 
14977 /// returns vector of all valid CVIDs
14978 PWIZ_API_DECL const std::vector<CVID>& cvids();
14979 
14980 
14981 } // namespace cv
14982 } // namespace pwiz
14983 
14984 
14985 #endif // _CV_HPP_
14986 
14987 
MS_CRF_OBSOLETE
MS_CRF_OBSOLETE
CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond ...
Definition: cv.hpp:1155
MS_Laser_Desorption_OBSOLETE
MS_Laser_Desorption_OBSOLETE
Laser Desorption: The formation of ions through the interaction of a laser with a material or with ga...
Definition: cv.hpp:1290
MS_spectra_combination
MS_spectra_combination
spectra combination: Method used to combine the mass spectra.
Definition: cv.hpp:2319
MS_ICAT_reagent
MS_ICAT_reagent
ICAT reagent: Isotope coded affinity tag reagent.
Definition: cv.hpp:8262
UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_
UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_
dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
Definition: cv.hpp:13173
MS_top_hat_baseline_reduction
MS_top_hat_baseline_reduction
top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations ...
Definition: cv.hpp:6411
MS_frag__precursor_ion
MS_frag__precursor_ion
frag: precursor ion: Fragmentation information, type of product: precursor ion.
Definition: cv.hpp:4974
UNIMOD_AccQTag
UNIMOD_AccQTag
AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
Definition: cv.hpp:9747
MS_LTQ_Orbitrap_Classic
MS_LTQ_Orbitrap_Classic
LTQ Orbitrap Classic: Thermo Fisher Scientific LTQ Orbitrap Classic.
Definition: cv.hpp:8928
UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_
UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_
dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
Definition: cv.hpp:12984
UNIMOD_iTRAQ8plex
UNIMOD_iTRAQ8plex
iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
Definition: cv.hpp:10857
MS_Bruker_U2_format
MS_Bruker_U2_format
Bruker U2 format: Bruker HyStar U2 file format.
Definition: cv.hpp:3147
UNIMOD_Cys__methylaminoAla
UNIMOD_Cys__methylaminoAla
Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ...
Definition: cv.hpp:11157
MS_PeptideShaker
MS_PeptideShaker
PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification result...
Definition: cv.hpp:7824
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
Definition: cv.hpp:13122
MS_ACQUITY_UPLC_H_Class_Bio
MS_ACQUITY_UPLC_H_Class_Bio
ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
Definition: cv.hpp:5703
MS_Waters_software
MS_Waters_software
Waters software: Waters software for data acquisition and analysis.
Definition: cv.hpp:2751
UNIMOD_Cys__Asn
UNIMOD_Cys__Asn
Cys->Asn: Cys->Asn substitution.
Definition: cv.hpp:11442
UO_degree
UO_degree
degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
Definition: cv.hpp:14352
UNIMOD_MesitylOxide
UNIMOD_MesitylOxide
MesitylOxide: Acetone chemical artifact.
Definition: cv.hpp:13500
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
Definition: cv.hpp:12753
MS_UniProtKB_text_sequence_format
MS_UniProtKB_text_sequence_format
UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
Definition: cv.hpp:8436
MS_pymzML
MS_pymzML
pymzML: Python module to interface mzML Data.
Definition: cv.hpp:6156
MS_product_ion_m_z
MS_product_ion_m_z
product ion m/z: The m/z of the product ion.
Definition: cv.hpp:4101
UNIMOD_Fluorescein_tyramine
UNIMOD_Fluorescein_tyramine
Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
Definition: cv.hpp:13416
UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
Definition: cv.hpp:13335
MS_hr_ms_compound_identification_confidence_level
MS_hr_ms_compound_identification_confidence_level
hr-ms compound identification confidence level: Refined High Resolution mass spectrometry confidence ...
Definition: cv.hpp:9288
MS_Progenesis_peptide_count
MS_Progenesis_peptide_count
Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
Definition: cv.hpp:6099
UNIMOD_Hex_1_HexA_1_HexNAc_2_
UNIMOD_Hex_1_HexA_1_HexNAc_2_
Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
Definition: cv.hpp:12810
MS_even_electron_ion_OBSOLETE
MS_even_electron_ion_OBSOLETE
even-electron ion: An ion containing no unpaired electrons in its ground electronic state,...
Definition: cv.hpp:1200
MS_GenoTools
MS_GenoTools
GenoTools: Bruker GenoTools software.
Definition: cv.hpp:2841
MS_target_MRM_transition
MS_target_MRM_transition
target MRM transition (target SRM transition): A transition used to target a specific compound that m...
Definition: cv.hpp:6459
UNIMOD_Thr__Ser
UNIMOD_Thr__Ser
Thr->Ser: Thr->Ser substitution.
Definition: cv.hpp:10728
MS_ProteoWizard_msaccess
MS_ProteoWizard_msaccess
ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
Definition: cv.hpp:7071
UNIMOD_Pro__Ala
UNIMOD_Pro__Ala
Pro->Ala: Pro->Ala substitution.
Definition: cv.hpp:10626
UNIMOD_Tyr__Ser
UNIMOD_Tyr__Ser
Tyr->Ser: Tyr->Ser substitution.
Definition: cv.hpp:10791
MS_quantification_file_format
MS_quantification_file_format
quantification file format: File format containing quantification results.
Definition: cv.hpp:6672
MS_principal_ion_OBSOLETE
MS_principal_ion_OBSOLETE
principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of ...
Definition: cv.hpp:1692
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
Definition: cv.hpp:5397
UNIMOD_Hex_6_HexNAc_2_
UNIMOD_Hex_6_HexNAc_2_
Hex(6)HexNAc(2): Hex(6) HexNAc(2).
Definition: cv.hpp:12480
MS______D_______D__
MS______D_______D__
((?<=D))|((?=D)): Regular expression for formic acid.
Definition: cv.hpp:4410
UO_volt
UO_volt
volt: An electric potential difference unit which is equal to the work per unit charge....
Definition: cv.hpp:14451
UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_
UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_
dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:12684
MS_retention_time_window_attribute
MS_retention_time_window_attribute
retention time window attribute: An attribute of a window in time about which a peptide might elute f...
Definition: cv.hpp:3453
MS_impact
MS_impact
impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:6681
UNIMOD_Hex_2_Pent_2_
UNIMOD_Hex_2_Pent_2_
Hex(2)Pent(2): Hex(2) Pent(2).
Definition: cv.hpp:13650
UNIMOD_biotinAcrolein298
UNIMOD_biotinAcrolein298
biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
Definition: cv.hpp:12144
MS_2_iodobenzoate
MS_2_iodobenzoate
2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
Definition: cv.hpp:6174
UO_siemens
UO_siemens
siemens: An electrical conduction unit which is equal to A/V.
Definition: cv.hpp:14589
MS_selected_reaction_monitoring
MS_selected_reaction_monitoring
selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected ...
Definition: cv.hpp:990
UNIMOD_Val__Xle
UNIMOD_Val__Xle
Val->Xle: Val->Leu/Ile substitution.
Definition: cv.hpp:10767
MS_SQID_deltaScore
MS_SQID_deltaScore
SQID:deltaScore: The SQID result 'deltaScore'.
Definition: cv.hpp:6078
MS_pulse_duration
MS_pulse_duration
pulse duration: Describes how long the laser beam was emitted from the laser device.
Definition: cv.hpp:3237
MS_TopMG_fixed_modification
MS_TopMG_fixed_modification
TopMG:fixed modification: Fixed modifications for TopMG searching.
Definition: cv.hpp:9228
MS_impact_HD
MS_impact_HD
impact HD: Bruker Daltonics' impact HD.
Definition: cv.hpp:8460
MS_database_UniProtKB
MS_database_UniProtKB
database UniProtKB: The name of the UniProtKB knowledgebase.
Definition: cv.hpp:6825
MS_mzidLib_CombineSearchEngines
MS_mzidLib_CombineSearchEngines
mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three searc...
Definition: cv.hpp:7185
UNIMOD_EDT_iodoacetyl_PEO_biotin
UNIMOD_EDT_iodoacetyl_PEO_biotin
EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
Definition: cv.hpp:9594
MS_full_spectrum
MS_full_spectrum
full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stag...
Definition: cv.hpp:2352
UNIMOD_Unknown_210
UNIMOD_Unknown_210
Unknown:210: Unidentified modification of 210.1616 found in open search.
Definition: cv.hpp:13758
UNIMOD_FormylMet
UNIMOD_FormylMet
FormylMet: Addition of N-formyl met.
Definition: cv.hpp:9570
MS_fragmentation_ion_type
MS_fragmentation_ion_type
fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a...
Definition: cv.hpp:7371
MS_X_Tandem_hyperscore
MS_X_Tandem_hyperscore
X!Tandem:hyperscore: The X!Tandem hyperscore.
Definition: cv.hpp:4401
PEFF_NumberOfEntries
PEFF_NumberOfEntries
NumberOfEntries: Number of sequence entries in the database.
Definition: cv.hpp:150
UNIMOD_Hex_5_HexA_1_
UNIMOD_Hex_5_HexA_1_
Hex(5)HexA(1): Hex(5) HexA.
Definition: cv.hpp:13674
UNIMOD_Pent_1_HexNAc_1_
UNIMOD_Pent_1_HexNAc_1_
Pent(1)HexNAc(1): Pent HexNAc.
Definition: cv.hpp:13635
UNIMOD_Biotin_Thermo_21360
UNIMOD_Biotin_Thermo_21360
Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
Definition: cv.hpp:10965
MS_GC_IsoLink
MS_GC_IsoLink
GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
Definition: cv.hpp:2616
MS_blackbody_infrared_radiative_dissociation
MS_blackbody_infrared_radiative_dissociation
blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherei...
Definition: cv.hpp:1146
MS_AAIndex_mass_table
MS_AAIndex_mass_table
AAIndex mass table: The masses used in the mass table are taken from AAIndex.
Definition: cv.hpp:4446
MS_Conversion_to_mzXML
MS_Conversion_to_mzXML
Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
Definition: cv.hpp:2244
UNIMOD_O_Methylphosphate
UNIMOD_O_Methylphosphate
O-Methylphosphate: O-Methylphosphorylation.
Definition: cv.hpp:10839
UNIMOD_Met__Hse
UNIMOD_Met__Hse
Met->Hse: Homoserine.
Definition: cv.hpp:9399
MS_superelastic_collision_OBSOLETE
MS_superelastic_collision_OBSOLETE
superelastic collision: Collision in which the translational energy of the fast-moving collision part...
Definition: cv.hpp:1896
MS_unified_atomic_mass_unit_OBSOLETE
MS_unified_atomic_mass_unit_OBSOLETE
unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground sta...
Definition: cv.hpp:1116
MS_____M_
MS_____M_
(?<=M): Regular expression for CNBr.
Definition: cv.hpp:4407
MS_ProteinExtractor_PhenyxWeighting
MS_ProteinExtractor_PhenyxWeighting
ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the sea...
Definition: cv.hpp:4737
MS_reflectron_state
MS_reflectron_state
reflectron state: Status of the reflectron, turned on or off.
Definition: cv.hpp:324
MS_protein_ambiguity_group_result_details
MS_protein_ambiguity_group_result_details
protein ambiguity group result details:
Definition: cv.hpp:3900
MS_Digital_Object_Identifier__DOI_
MS_Digital_Object_Identifier__DOI_
Digital Object Identifier (DOI): DOI unique identifier of a publication.
Definition: cv.hpp:6183
UNIMOD_Biotin_Thermo_21325
UNIMOD_Biotin_Thermo_21325
Biotin:Thermo-21325: Was ChromoBiotin.
Definition: cv.hpp:11040
MS_tab_delimited_text_format
MS_tab_delimited_text_format
tab delimited text format: A file format that has two or more columns of tabular data where each colu...
Definition: cv.hpp:3450
MS_Mascot_IntegratedSpectralLibrarySearch
MS_Mascot_IntegratedSpectralLibrarySearch
Mascot:IntegratedSpectralLibrarySearch: Means that Mascot has integrated the search results of databa...
Definition: cv.hpp:8667
MS_parent_mass_type_average
MS_parent_mass_type_average
parent mass type average: Mass type setting for parent mass was average isotopic.
Definition: cv.hpp:4065
UO_micromolar
UO_micromolar
micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
Definition: cv.hpp:13995
MS_impact_angle
MS_impact_angle
impact angle: Describes the angle between the laser beam and the sample target.
Definition: cv.hpp:3243
UO_milliliter_per_kilogram
UO_milliliter_per_kilogram
milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogra...
Definition: cv.hpp:14391
MS_assay_label_attribute
MS_assay_label_attribute
assay label attribute: Attribute describing an assay label.
Definition: cv.hpp:6780
UNIMOD_Cys__Val
UNIMOD_Cys__Val
Cys->Val: Cys->Val substitution.
Definition: cv.hpp:11454
MS_frag__iTRAQ_4plex_reporter_ion
MS_frag__iTRAQ_4plex_reporter_ion
frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integ...
Definition: cv.hpp:8463
MS_fast_evaporation_MALDI_sample_preparation
MS_fast_evaporation_MALDI_sample_preparation
fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
Definition: cv.hpp:6396
UNIMOD_MM_diphenylpentanone
UNIMOD_MM_diphenylpentanone
MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
Definition: cv.hpp:12147
MS_pressure_array
MS_pressure_array
pressure array: A data array of pressure measurements.
Definition: cv.hpp:3162
MS_signal_to_noise_array
MS_signal_to_noise_array
signal to noise array: A data array of signal-to-noise values.
Definition: cv.hpp:2157
UO_picomolal
UO_picomolal
picomolal: A molality unit which is equal to 10^[-12] m.
Definition: cv.hpp:14019
MS_low_intensity_data_point_removal
MS_low_intensity_data_point_removal
low intensity data point removal: The removal of very low intensity data points that are likely to be...
Definition: cv.hpp:2433
MS_mass_spectrometer_OBSOLETE
MS_mass_spectrometer_OBSOLETE
mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of io...
Definition: cv.hpp:1440
pwiz::cv::CV::fullName
std::string fullName
the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
Definition: cv.hpp:14924
MS_CLINPROT_robot
MS_CLINPROT_robot
CLINPROT robot: Bruker CLINPROT robot software.
Definition: cv.hpp:2799
MS_ultraflex_III_TOF_TOF
MS_ultraflex_III_TOF_TOF
ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
Definition: cv.hpp:2784
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format)...
Definition: cv.hpp:5220
UO_cable
UO_cable
cable: A maritime length unit which is equal to 608 feet, 100 fathoms, or 185.3184 metres
Definition: cv.hpp:14856
MS_LCQ_Deca
MS_LCQ_Deca
LCQ Deca: ThermoFinnigan LCQ Deca.
Definition: cv.hpp:2271
MS_search_statistics
MS_search_statistics
search statistics: The details of the actual run of the search.
Definition: cv.hpp:3999
MS_TSQ_Quantum_Access
MS_TSQ_Quantum_Access
TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
Definition: cv.hpp:2604
UNIMOD_VFQQQTGG
UNIMOD_VFQQQTGG
VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
Definition: cv.hpp:11136
MS_DB_composition_only_decoy
MS_DB_composition_only_decoy
DB composition only decoy: Decoy database composition: database contains only decoy entries.
Definition: cv.hpp:4758
MS_Phenyx_AC_Score
MS_Phenyx_AC_Score
Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in t...
Definition: cv.hpp:4566
MS_peptide_descriptions
MS_peptide_descriptions
peptide descriptions: Descriptions of peptides.
Definition: cv.hpp:4473
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_
Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
Definition: cv.hpp:12765
UO_nano
UO_nano
nano: A prefix in the metric system denoting a factor of 10 to the power of -9.
Definition: cv.hpp:14697
MS_Micromass_PKL_format
MS_Micromass_PKL_format
Micromass PKL format: Micromass PKL file format.
Definition: cv.hpp:2304
UO_kilogram_per_hectare
UO_kilogram_per_hectare
kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divid...
Definition: cv.hpp:14646
MS_adduct_ion_formula
MS_adduct_ion_formula
adduct ion formula: Adduct formation formula specified by the given value.
Definition: cv.hpp:8859
UNIMOD_Glu__Met
UNIMOD_Glu__Met
Glu->Met: Glu->Met substitution.
Definition: cv.hpp:11502
UNIMOD_dHex_1_Hex_4_HexNAc_3_
UNIMOD_dHex_1_Hex_4_HexNAc_3_
dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
Definition: cv.hpp:12486
UO_formazin_nephelometric_unit
UO_formazin_nephelometric_unit
formazin nephelometric unit: 1000 formazin turbidity units (FNU) on the empirical formazin turbidity ...
Definition: cv.hpp:14751
MS_database_IPI_human
MS_database_IPI_human
database IPI_human: International Protein Index database for Homo sapiens sequences.
Definition: cv.hpp:3885
MS_multiple_enzyme_combination_rules_OBSOLETE
MS_multiple_enzyme_combination_rules_OBSOLETE
multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead....
Definition: cv.hpp:3639
UNIMOD_QAT
UNIMOD_QAT
QAT: APTA-d0.
Definition: cv.hpp:9750
MS_Progenesis_peptide_raw_abundance
MS_Progenesis_peptide_raw_abundance
Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-M...
Definition: cv.hpp:6093
UNIMOD_Methyl
UNIMOD_Methyl
Methyl: Methylation.
Definition: cv.hpp:9447
UNIMOD_His__Lys
UNIMOD_His__Lys
His->Lys: His->Lys substitution.
Definition: cv.hpp:11610
MS_ICPL_reagent_6
MS_ICPL_reagent_6
ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
Definition: cv.hpp:8280
PEFF_DbDate_OBSOLETE
PEFF_DbDate_OBSOLETE
DbDate: Database date (release or file date of the source) according to database provider.
Definition: cv.hpp:147
MS_TopPIC_proteoform_level_cutoff_value
MS_TopPIC_proteoform_level_cutoff_value
TopPIC:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteofo...
Definition: cv.hpp:9189
UNIMOD_TMPP_Ac
UNIMOD_TMPP_Ac
TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
Definition: cv.hpp:10980
MS_SEQUEST_sort_by_RSp
MS_SEQUEST_sort_by_RSp
SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in th...
Definition: cv.hpp:3660
UNIMOD_Hex_3_HexNAc_6_Sulf_2_
UNIMOD_Hex_3_HexNAc_6_Sulf_2_
Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
Definition: cv.hpp:12675
MS_Panorama_Public_dataset_identifier
MS_Panorama_Public_dataset_identifier
Panorama Public dataset identifier: Dataset identifier issued by the Panorama Public repository....
Definition: cv.hpp:9039
UNIMOD_2_dimethylsuccinyl
UNIMOD_2_dimethylsuccinyl
2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
Definition: cv.hpp:12036
MS_peptide_phosphoRS_score
MS_peptide_phosphoRS_score
peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
Definition: cv.hpp:8103
MS_Profound_ClusterRank
MS_Profound_ClusterRank
Profound:ClusterRank: The Profound cluster rank.
Definition: cv.hpp:4905
UNIMOD_Hex_1_Pent_3_
UNIMOD_Hex_1_Pent_3_
Hex(1)Pent(3): Hex Pent(3).
Definition: cv.hpp:12408
UNIMOD_dHex_2_Hex_3_HexNAc_2_
UNIMOD_dHex_2_Hex_3_HexNAc_2_
dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
Definition: cv.hpp:13338
MS_EMR_spectrum
MS_EMR_spectrum
EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagneti...
Definition: cv.hpp:3108
MS_MALDI_Synapt_G2_S_MS
MS_MALDI_Synapt_G2_S_MS
MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
Definition: cv.hpp:5736
MS_Mascot_use_MudPIT_scoring_OBSOLETE
MS_Mascot_use_MudPIT_scoring_OBSOLETE
Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
Definition: cv.hpp:5415
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_
dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc —OR— Hex(5) HexNAc(3) NeuAc.
Definition: cv.hpp:12603
UO_milliliter_per_cubic_meter
UO_milliliter_per_cubic_meter
milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter ...
Definition: cv.hpp:14415
UO_kilovolt
UO_kilovolt
kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
Definition: cv.hpp:14541
UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_
UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_
Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
Definition: cv.hpp:13428
MS_decoy_peptide
MS_decoy_peptide
decoy peptide: A putative identified peptide issued from a decoy sequence database.
Definition: cv.hpp:7098
MS_MaxQuant_MS_MS_count
MS_MaxQuant_MS_MS_count
MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
Definition: cv.hpp:6126
MS_3100
MS_3100
3100: Waters quadrupole based 3100.
Definition: cv.hpp:5772
MS_DBImporter
MS_DBImporter
DBImporter: Imports data to an OpenMS database.
Definition: cv.hpp:2934
MS_ions_series_considered
MS_ions_series_considered
ions series considered: The ion series that were used during the calculation of the count (e....
Definition: cv.hpp:3825
UNIMOD_OxArgBiotinRed
UNIMOD_OxArgBiotinRed
OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:9591
MS_database_source
MS_database_source
database source: The organisation, project or laboratory from where the database is obtained (UniProt...
Definition: cv.hpp:3534
UO_foot_candle
UO_foot_candle
foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread ...
Definition: cv.hpp:14256
UNIMOD_NA_LNO2
UNIMOD_NA_LNO2
NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
Definition: cv.hpp:10809
UO_cubic_meter_per_kilogram
UO_cubic_meter_per_kilogram
cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by...
Definition: cv.hpp:14082
UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_
dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
Definition: cv.hpp:12609
MS_includes_supersede_excludes
MS_includes_supersede_excludes
includes supersede excludes: A priority setting specifying that included targets have priority over t...
Definition: cv.hpp:3468
UNIMOD_Xlink_BS2G_114_
UNIMOD_Xlink_BS2G_114_
Xlink:BS2G[114]: Water-quenched monolink of BS2-G crosslinker.
Definition: cv.hpp:13572
MS_moving_belt
MS_moving_belt
moving belt: Continuous moving surface in the form of a belt which passes through an ion source carry...
Definition: cv.hpp:468
MS_SRM
MS_SRM
SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z sel...
Definition: cv.hpp:993
UNIMOD_NEM_2H_5__H2O
UNIMOD_NEM_2H_5__H2O
NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
Definition: cv.hpp:12213
MS_electron_capture_dissociation
MS_electron_capture_dissociation
electron capture dissociation: A process in which a multiply protonated molecules interacts with a lo...
Definition: cv.hpp:1194
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and s...
Definition: cv.hpp:4374
UNIMOD_BADGE
UNIMOD_BADGE
BADGE: Bisphenol A diglycidyl ether derivative.
Definition: cv.hpp:10293
UNIMOD_BMP_piperidinol
UNIMOD_BMP_piperidinol
BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
Definition: cv.hpp:12069
MS_product_ion_intensity
MS_product_ion_intensity
product ion intensity: The intensity of a single product ion.
Definition: cv.hpp:4107
UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_
dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
Definition: cv.hpp:12639
MS_TMT_reagent_129N
MS_TMT_reagent_129N
TMT reagent 129N: The name of the sample labelled with the TMT reagent 129N.
Definition: cv.hpp:8721
MS_common_search_engine_input_parameter
MS_common_search_engine_input_parameter
common search engine input parameter: Search engine input parameter that is shared by more than one s...
Definition: cv.hpp:6732
MS_decoy_DB_type_reverse
MS_decoy_DB_type_reverse
decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
Definition: cv.hpp:4020
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
Definition: cv.hpp:5229
MS_decoy_DB_from_IPI_rat_OBSOLETE
MS_decoy_DB_from_IPI_rat_OBSOLETE
decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegic...
Definition: cv.hpp:4278
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_2_
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_2_
Hex(5)HexNAc(4)NeuAc(1)Ac(2): Hex(5) HexNAc(4) NeuAc Ac(2).
Definition: cv.hpp:13749
UNIMOD_Tween80
UNIMOD_Tween80
Tween80: Tween 80 synthetic polymer terminus.
Definition: cv.hpp:13452
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_
Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
Definition: cv.hpp:13314
UNIMOD_DiART6plex115
UNIMOD_DiART6plex115
DiART6plex115: Accurate mass for DiART6plex 115.
Definition: cv.hpp:12291
UNIMOD_DiLeu4plex117
UNIMOD_DiLeu4plex117
DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
Definition: cv.hpp:12162
MS_ELEMENT2_OBSOLETE
MS_ELEMENT2_OBSOLETE
ELEMENT2: ThermoFinnigan ELEMENT2 MS.
Definition: cv.hpp:831
MS_collisionally_activated_dissociation
MS_collisionally_activated_dissociation
collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion aft...
Definition: cv.hpp:756
UO_absorbed_dose_unit
UO_absorbed_dose_unit
absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation t...
Definition: cv.hpp:14187
UNIMOD_Hex_2_HexNAc_1_
UNIMOD_Hex_2_HexNAc_1_
Hex(2)HexNAc(1): Hex(2) HexNAc.
Definition: cv.hpp:12399
MS_PROTEINEER_dp
MS_PROTEINEER_dp
PROTEINEER dp: Bruker PROTEINEER dp software.
Definition: cv.hpp:2859
UNIMOD_dHex_1_Hex_1_
UNIMOD_dHex_1_Hex_1_
dHex(1)Hex(1): Hex1dHex1.
Definition: cv.hpp:12225
UNIMOD_Piperidine
UNIMOD_Piperidine
Piperidine: Piperidination.
Definition: cv.hpp:10347
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_
dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
Definition: cv.hpp:12867
MS_daly_detector
MS_daly_detector
daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier....
Definition: cv.hpp:651
MS_Byonic__Peptide_AbsLogProb2D
MS_Byonic__Peptide_AbsLogProb2D
Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior e...
Definition: cv.hpp:7383
MS_frag__x_ion
MS_frag__x_ion
frag: x ion: Fragmentation information, type of product: x ion.
Definition: cv.hpp:4116
UNIMOD_Ala__Asn
UNIMOD_Ala__Asn
Ala->Asn: Ala->Asn substitution.
Definition: cv.hpp:11406
UNIMOD_Myristoyl_Delta_H__4_
UNIMOD_Myristoyl_Delta_H__4_
Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
Definition: cv.hpp:9633
MS_protein_value__median_of_peptide_ratios
MS_protein_value__median_of_peptide_ratios
protein value: median of peptide ratios: Protein quantification value calculated as median of peptide...
Definition: cv.hpp:6651
MS_LTQ_Velos_ETD
MS_LTQ_Velos_ETD
LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
Definition: cv.hpp:3264
MS_native_spectrum_identifier_format__combined_spectra
MS_native_spectrum_identifier_format__combined_spectra
native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers th...
Definition: cv.hpp:8394
MS_Mascot_C13_counts
MS_Mascot_C13_counts
Mascot:C13 counts: C13 peaks to use in peak detection.
Definition: cv.hpp:6309
MS_Paragon_input_parameter
MS_Paragon_input_parameter
Paragon input parameter: Search engine input parameters specific to Paragon.
Definition: cv.hpp:7713
MS_param__z_2_ion
MS_param__z_2_ion
param: z+2 ion: Parameter information, type of product: z+2 ion.
Definition: cv.hpp:4626
MS_IT
MS_IT
IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in c...
Definition: cv.hpp:1281
UNIMOD_Diethylphosphate
UNIMOD_Diethylphosphate
Diethylphosphate: O-Diethylphosphorylation.
Definition: cv.hpp:10842
MS_dimeric_ion_OBSOLETE
MS_dimeric_ion_OBSOLETE
dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral ...
Definition: cv.hpp:1656
MS_solid_state_laser
MS_solid_state_laser
solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host w...
Definition: cv.hpp:3249
UNIMOD_Xlink_SMCC_321_
UNIMOD_Xlink_SMCC_321_
Xlink:SMCC[321]: Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine.
Definition: cv.hpp:11106
MS_Pro_BLAST
MS_Pro_BLAST
Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
Definition: cv.hpp:2682
UO_liter_per_kilogram
UO_liter_per_kilogram
liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogra...
Definition: cv.hpp:14388
MS_high_intensity_threshold
MS_high_intensity_threshold
high intensity threshold: Threshold above which some action is taken.
Definition: cv.hpp:2565
MS_MD5
MS_MD5
MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used...
Definition: cv.hpp:2313
UNIMOD_EQAT_2H_5_
UNIMOD_EQAT_2H_5_
EQAT:2H(5): EAPTA d5.
Definition: cv.hpp:9759
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_
dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc —OR— Hex(2) HexNAc NeuAc.
Definition: cv.hpp:12855
MS_Tranche_file_hash
MS_Tranche_file_hash
Tranche file hash: Hash assigned by the Tranche resource to an individual file.
Definition: cv.hpp:6201
PEFF_DbSource
PEFF_DbSource
DbSource: Source of the database file.
Definition: cv.hpp:141
UNIMOD_SulfurDioxide
UNIMOD_SulfurDioxide
SulfurDioxide: SulfurDioxide.
Definition: cv.hpp:12171
UNIMOD_TNBS
UNIMOD_TNBS
TNBS: Tri nitro benzene.
Definition: cv.hpp:10908
UNIMOD_Dethiomethyl
UNIMOD_Dethiomethyl
Dethiomethyl: Prompt loss of side chain from oxidised Met.
Definition: cv.hpp:10359
MS_MassHunter_Quantitative_Analysis
MS_MassHunter_Quantitative_Analysis
MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-...
Definition: cv.hpp:2712
MS_Paragon_expression_error_factor
MS_Paragon_expression_error_factor
Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
Definition: cv.hpp:3963
MS_Mascot_input_parameter
MS_Mascot_input_parameter
Mascot input parameter: Search engine input parameters specific to Mascot.
Definition: cv.hpp:6735
MS_MALDI_Synapt_G2_MS
MS_MALDI_Synapt_G2_MS
MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5730
MS_number_of_sequences_searched
MS_number_of_sequences_searched
number of sequences searched: The number of sequences (proteins / nucleotides) from the database sear...
Definition: cv.hpp:3585
UNIMOD_Dimethyl_2H_6_13C_2_
UNIMOD_Dimethyl_2H_6_13C_2_
Dimethyl:2H(6)13C(2): Dimethylation.
Definition: cv.hpp:9963
UNIMOD_Triiodo
UNIMOD_Triiodo
Triiodo: Tri-Iodination.
Definition: cv.hpp:9627
MS_percent_of_base_peak_times_100
MS_percent_of_base_peak_times_100
percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the m...
Definition: cv.hpp:3420
MS_6410_Triple_Quad_LC_MS
MS_6410_Triple_Quad_LC_MS
6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent ...
Definition: cv.hpp:2031
MS_param__b_ion_H3PO4_DEPRECATED
MS_param__b_ion_H3PO4_DEPRECATED
param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
Definition: cv.hpp:7800
MS_retention_time_window_width
MS_retention_time_window_width
retention time window width: The full width of a retention time window for a chromatographic peak.
Definition: cv.hpp:6135
UNIMOD_CAF
UNIMOD_CAF
CAF: Sulfonation of N-terminus.
Definition: cv.hpp:9843
UNIMOD_Trp__Asp
UNIMOD_Trp__Asp
Trp->Asp: Trp->Asp substitution.
Definition: cv.hpp:11928
MS_counts_reporting
MS_counts_reporting
counts reporting: FeatureList of spectral counts.
Definition: cv.hpp:6813
MS_peptide
MS_peptide
peptide: A compound of low molecular weight that is composed of two or more amino acids.
Definition: cv.hpp:3276
MS_spectrum_subsumable_protein
MS_spectrum_subsumable_protein
spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are di...
Definition: cv.hpp:5211
MS_Pro_Quant
MS_Pro_Quant
Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
Definition: cv.hpp:2679
MS_API_350
MS_API_350
API 350: Applied Biosystems/MDS SCIEX API 350 MS.
Definition: cv.hpp:8220
UO_millimole
UO_millimole
millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
Definition: cv.hpp:13923
UNIMOD_Arg__Ala
UNIMOD_Arg__Ala
Arg->Ala: Arg->Ala substitution.
Definition: cv.hpp:11820
UNIMOD_Thr__Met
UNIMOD_Thr__Met
Thr->Met: Thr->Met substitution.
Definition: cv.hpp:10743
MS_SEQUEST_sort_by_MH_
MS_SEQUEST_sort_by_MH_
SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
Definition: cv.hpp:3633
UNIMOD_Met__Thr
UNIMOD_Met__Thr
Met->Thr: Met->Thr substitution.
Definition: cv.hpp:10587
UNIMOD_IGBP
UNIMOD_IGBP
IGBP: Light IDBEST tag for quantitation.
Definition: cv.hpp:9795
MS_ProteomeDiscoverer_Relaxed_Score_Threshold
MS_ProteomeDiscoverer_Relaxed_Score_Threshold
ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
Definition: cv.hpp:7581
MS_TOPP_NoiseFilterSGolay
MS_TOPP_NoiseFilterSGolay
TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
Definition: cv.hpp:6846
MS_detector_type
MS_detector_type
detector type: Type of detector used in the mass spectrometer.
Definition: cv.hpp:342
MS_PAnalyzer_ambiguous_group_member
MS_PAnalyzer_ambiguous_group_member
PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclu...
Definition: cv.hpp:7095
PEFF_KW
PEFF_KW
KW: Entry associated keyword(s).
Definition: cv.hpp:225
UNIMOD_2_nitrobenzyl
UNIMOD_2_nitrobenzyl
2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
Definition: cv.hpp:11355
UNIMOD_Glycerophospho
UNIMOD_Glycerophospho
Glycerophospho: Glycerophospho.
Definition: cv.hpp:10167
MS_peptide_start_on_chromosome_OBSOLETE
MS_peptide_start_on_chromosome_OBSOLETE
peptide start on chromosome: The overall start position on the chromosome to which a peptide has been...
Definition: cv.hpp:8373
MS_binomial_smoothing
MS_binomial_smoothing
binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-d...
Definition: cv.hpp:3027
MS_odd_electron_rule_OBSOLETE
MS_odd_electron_rule_OBSOLETE
odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions,...
Definition: cv.hpp:1089
MS_ITRAQAnalyzer
MS_ITRAQAnalyzer
ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS expe...
Definition: cv.hpp:6834
MS_MS_Numpress_linear_prediction_compression_followed_by_zlib_compression
MS_MS_Numpress_linear_prediction_compression_followed_by_zlib_compression
MS-Numpress linear prediction compression followed by zlib compression: Compression using MS-Numpress...
Definition: cv.hpp:8658
MS_PyMS
MS_PyMS
PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to th...
Definition: cv.hpp:1344
MS_DeBunker
MS_DeBunker
DeBunker: DeBunker software.
Definition: cv.hpp:6342
UNIMOD_Amidine
UNIMOD_Amidine
Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
Definition: cv.hpp:9648
MS_Th_s
MS_Th_s
Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
Definition: cv.hpp:3117
MS_SCiLS_Lab_format
MS_SCiLS_Lab_format
SCiLS Lab format: SCiLS Lab file format.
Definition: cv.hpp:7605
MS_source_sprayer
MS_source_sprayer
source sprayer: The source sprayer.
Definition: cv.hpp:6219
UNIMOD_Xlink_DMP_139_
UNIMOD_Xlink_DMP_139_
Xlink:DMP[139]: Ammonia quenched monolink of DMP crosslinker.
Definition: cv.hpp:13581
MS_TSQ_Quantiva
MS_TSQ_Quantiva
TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
Definition: cv.hpp:7704
MS_TopPIC_input_parameter
MS_TopPIC_input_parameter
TopPIC input parameter: Search engine input parameters specific to TopPIC.
Definition: cv.hpp:9159
UO_milliliter_per_liter
UO_milliliter_per_liter
milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of sol...
Definition: cv.hpp:14418
MS_Mascot_total_ions
MS_Mascot_total_ions
Mascot:total ions: The Mascot result 'Total ions'.
Definition: cv.hpp:3981
UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_
UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_
Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
Definition: cv.hpp:12831
UNIMOD_DiLeu4plex115
UNIMOD_DiLeu4plex115
DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
Definition: cv.hpp:12156
MS_infrared_multiphoton_dissociation
MS_infrared_multiphoton_dissociation
infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a res...
Definition: cv.hpp:1266
UNIMOD_Nethylmaleimide
UNIMOD_Nethylmaleimide
Nethylmaleimide: N-ethylmaleimide on cysteines.
Definition: cv.hpp:9573
MS_Bruker_Agilent_YEP_format
MS_Bruker_Agilent_YEP_format
Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
Definition: cv.hpp:2310
MS_Mascot_RequireBoldRed
MS_Mascot_RequireBoldRed
Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true,...
Definition: cv.hpp:4377
MS_MALDI_SYNAPT_G2_Si
MS_MALDI_SYNAPT_G2_Si
MALDI SYNAPT G2-Si: Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass...
Definition: cv.hpp:8601
UNIMOD_Xle__Ser
UNIMOD_Xle__Ser
Xle->Ser: Leu/Ile->Ser substitution.
Definition: cv.hpp:10560
MS_statistical_threshold
MS_statistical_threshold
statistical threshold: Estimated statistical threshold.
Definition: cv.hpp:7896
UNIMOD_NBS_13C_6_
UNIMOD_NBS_13C_6_
NBS:13C(6): Shimadzu NBS-13C.
Definition: cv.hpp:9717
UO_effective_dose_unit
UO_effective_dose_unit
effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that...
Definition: cv.hpp:14577
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
Definition: cv.hpp:5664
MS_jet_separator
MS_jet_separator
jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of dif...
Definition: cv.hpp:462
MS_S_lens_voltage
MS_S_lens_voltage
S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide i...
Definition: cv.hpp:6153
MS_nth_generation_product_ion_spectrum_OBSOLETE
MS_nth_generation_product_ion_spectrum_OBSOLETE
nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which t...
Definition: cv.hpp:1587
MS_Synapt_G2_HDMS
MS_Synapt_G2_HDMS
Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
Definition: cv.hpp:5745
UNIMOD_His__Arg
UNIMOD_His__Arg
His->Arg: His->Arg substitution.
Definition: cv.hpp:10524
MS_param__y_ion_H3PO4_DEPRECATED
MS_param__y_ion_H3PO4_DEPRECATED
param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
Definition: cv.hpp:7803
MS_TOPP_PepNovoAdapter
MS_TOPP_PepNovoAdapter
TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
Definition: cv.hpp:7002
UNIMOD_Ser__Thr
UNIMOD_Ser__Thr
Ser->Thr: Ser->Thr substitution.
Definition: cv.hpp:10704
MS_search_engine_specific_peptide_sequence_level_identification_statistic
MS_search_engine_specific_peptide_sequence_level_identification_statistic
search engine specific peptide sequence-level identification statistic: Search engine specific distin...
Definition: cv.hpp:7524
UNIMOD_Hex_1_HexNAc_2_Sulf_1_
UNIMOD_Hex_1_HexNAc_2_Sulf_1_
Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
Definition: cv.hpp:12426
MS_inclusive_high_intensity_threshold
MS_inclusive_high_intensity_threshold
inclusive high intensity threshold: Threshold at or above which some action is taken.
Definition: cv.hpp:3051
UNIMOD_Delta_Hg_1_
UNIMOD_Delta_Hg_1_
Delta:Hg(1): Mercury Mercaptan.
Definition: cv.hpp:9879
MS_cross_link_spectrum_identification_item
MS_cross_link_spectrum_identification_item
cross-link spectrum identification item: Cross-linked spectrum identification item.
Definition: cv.hpp:7983
UNIMOD_Biotin_phenacyl
UNIMOD_Biotin_phenacyl
Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
Definition: cv.hpp:10941
UNIMOD_Met_loss_Acetyl
UNIMOD_Met_loss_Acetyl
Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new...
Definition: cv.hpp:10923
UNIMOD_CHDH
UNIMOD_CHDH
CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
Definition: cv.hpp:10206
MS_Shimadzu_Biotech_QTOF_nativeID_format
MS_Shimadzu_Biotech_QTOF_nativeID_format
Shimadzu Biotech QTOF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:9117
MS_Orbitrap_Fusion_ETD
MS_Orbitrap_Fusion_ETD
Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
Definition: cv.hpp:7701
MS_focal_plane_collector
MS_focal_plane_collector
focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously i...
Definition: cv.hpp:1617
UNIMOD_Iminobiotin
UNIMOD_Iminobiotin
Iminobiotin: Iminobiotinylation.
Definition: cv.hpp:9540
MS_ALEX
MS_ALEX
ALEX: Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1).
Definition: cv.hpp:9351
MS_ProteomeCentral_dataset_URI
MS_ProteomeCentral_dataset_URI
ProteomeCentral dataset URI: URI associated to one PX submission in ProteomeCentral.
Definition: cv.hpp:8964
MS_non_leading_protein
MS_non_leading_protein
non-leading protein: Zero to many proteins within each group should be annotated as non-leading to in...
Definition: cv.hpp:7656
MS_SpectraST_dot
MS_SpectraST_dot
SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
Definition: cv.hpp:4650
MS_QSTAR_Pulsar
MS_QSTAR_Pulsar
QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
Definition: cv.hpp:2640
MS_small_molecule_attribute
MS_small_molecule_attribute
small molecule attribute: Attribute describing a small molecule.
Definition: cv.hpp:6801
MS_deisotoping
MS_deisotoping
deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is comm...
Definition: cv.hpp:363
MS_No_variable_modifications_searched
MS_No_variable_modifications_searched
No variable modifications searched: No variable modifications are included as a parameter for the sea...
Definition: cv.hpp:7812
UNIMOD_Gly__Cys
UNIMOD_Gly__Cys
Gly->Cys: Gly->Cys substitution.
Definition: cv.hpp:10509
UNIMOD_dHex_1_Hex_1_HexNAc_4_
UNIMOD_dHex_1_Hex_1_HexNAc_4_
dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
Definition: cv.hpp:12996
UNIMOD_Methylamine
UNIMOD_Methylamine
Methylamine: Michael addition with methylamine.
Definition: cv.hpp:9975
MS_QTRAP_4500
MS_QTRAP_4500
QTRAP 4500: SCIEX QTRAP 4500.
Definition: cv.hpp:8193
MS_Scaffold__Minimum_Peptide_Probability
MS_Scaffold__Minimum_Peptide_Probability
Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for pro...
Definition: cv.hpp:5130
UNIMOD_Gln__Lys
UNIMOD_Gln__Lys
Gln->Lys: Gln->Lys substitution.
Definition: cv.hpp:10647
MS_BioTools
MS_BioTools
BioTools: Bruker software for data analysis.
Definition: cv.hpp:2790
PEFF_Conversion
PEFF_Conversion
Conversion: Description of the conversion from original format to this current one.
Definition: cv.hpp:153
MS_surface_assisted_laser_desorption_ionization
MS_surface_assisted_laser_desorption_ionization
surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are...
Definition: cv.hpp:1788
MS_MSFit_Mowse_score
MS_MSFit_Mowse_score
MSFit:Mowse score: The MSFit Mowse score.
Definition: cv.hpp:4908
UNIMOD_dHex_2_Hex_4_HexNAc_4_
UNIMOD_dHex_2_Hex_4_HexNAc_4_
dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4) —OR— Hex(4) HexNAc(4) dHex Pent Me.
Definition: cv.hpp:13377
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_
Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
Definition: cv.hpp:12807
MS_frag__z_ion
MS_frag__z_ion
frag: z ion: Fragmentation information, type of product: z ion.
Definition: cv.hpp:4122
UNIMOD_Label_15N_1_
UNIMOD_Label_15N_1_
Label:15N(1): 15N(1).
Definition: cv.hpp:11268
MS_1200_series_LC_MSD_SL
MS_1200_series_LC_MSD_SL
1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap fami...
Definition: cv.hpp:1998
UO_unit_of_molality
UO_unit_of_molality
unit of molality: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:14004
MS_value_between_0_and_1000_inclusive
MS_value_between_0_and_1000_inclusive
value between 0 and 1000 inclusive: Value range for scores.
Definition: cv.hpp:8679
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact p...
Definition: cv.hpp:5298
MS_isotopologue_MS_peak
MS_isotopologue_MS_peak
isotopologue MS peak: The described isotopologue mass spectrometric signal. The value slot contains a...
Definition: cv.hpp:9297
MS_binary_data_type
MS_binary_data_type
binary data type: Encoding type of binary data specifying the binary representation and precision,...
Definition: cv.hpp:2160
MS_direct_inlet
MS_direct_inlet
direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable p...
Definition: cv.hpp:447
MS_peptide_start_positions_on_chromosome
MS_peptide_start_positions_on_chromosome
peptide start positions on chromosome: A comma separated list of start positions within exons to whic...
Definition: cv.hpp:8385
UO_kilogram_meter_per_second
UO_kilogram_meter_per_second
kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass obje...
Definition: cv.hpp:14076
MS_MarkerView_Software
MS_MarkerView_Software
MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
Definition: cv.hpp:2664
MS_ion_optics_attribute
MS_ion_optics_attribute
ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry...
Definition: cv.hpp:2061
UNIMOD_Xlink_BuUrBu_317_
UNIMOD_Xlink_BuUrBu_317_
Xlink:BuUrBu[317]: Tris quenched monolink of BuUrBu crosslinker.
Definition: cv.hpp:13539
UNIMOD_Asn__Gln
UNIMOD_Asn__Gln
Asn->Gln: Asn->Gln substitution.
Definition: cv.hpp:11739
UNIMOD_Lys_loss
UNIMOD_Lys_loss
Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
Definition: cv.hpp:9930
MS_6538_Q_TOF_LC_MS
MS_6538_Q_TOF_LC_MS
6538 Q-TOF LC/MS: The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8784
UNIMOD_Label_13C_6_15N_4__Methyl
UNIMOD_Label_13C_6_15N_4__Methyl
Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:11292
UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_
UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_
dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:13152
UNIMOD_Biotin
UNIMOD_Biotin
Biotin: Biotinylation.
Definition: cv.hpp:9378
MS_MyriMatch_mzFidelity
MS_MyriMatch_mzFidelity
MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental...
Definition: cv.hpp:5178
MS_identification_file_format
MS_identification_file_format
identification file format: Attribute describing an identification file format.
Definition: cv.hpp:6837
UNIMOD_Phe__Gln
UNIMOD_Phe__Gln
Phe->Gln: Phe->Gln substitution.
Definition: cv.hpp:11553
MS_retention_time
MS_retention_time
retention time: A time interval from the start of chromatography when an analyte exits a chromatograp...
Definition: cv.hpp:3387
UNIMOD_GEE
UNIMOD_GEE
GEE: Transamidation of glycine ethyl ester to glutamine.
Definition: cv.hpp:13419
UNIMOD_dHex_1_Hex_6_HexNAc_2_
UNIMOD_dHex_1_Hex_6_HexNAc_2_
dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
Definition: cv.hpp:12516
MS_two_sample_run
MS_two_sample_run
two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
Definition: cv.hpp:5871
MS_m_z_calibration
MS_m_z_calibration
m/z calibration: Calibration of data point m/z positions.
Definition: cv.hpp:4860
MS_SEQUEST_expectation_value
MS_SEQUEST_expectation_value
SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
Definition: cv.hpp:3936
MS_time_unit_OBSOLETE
MS_time_unit_OBSOLETE
time unit: Time Unit.
Definition: cv.hpp:2259
MS_MassHunter_BioConfirm
MS_MassHunter_BioConfirm
MassHunter BioConfirm: Software for protein characterization.
Definition: cv.hpp:2718
UNIMOD_NO_SMX_SEMD
UNIMOD_NO_SMX_SEMD
NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
Definition: cv.hpp:10890
MS_heterolytic_cleavage_OBSOLETE
MS_heterolytic_cleavage_OBSOLETE
heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single b...
Definition: cv.hpp:1833
MS_7000A_Triple_Quadrupole_GC_MS
MS_7000A_Triple_Quadrupole_GC_MS
7000A Triple Quadrupole GC/MS: The 7000A Quadrupole GC/MS system is a Agilent gas chromatography inst...
Definition: cv.hpp:8826
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5559
MS_ProteomeDiscoverer_max_number_neutral_loss
MS_ProteomeDiscoverer_max_number_neutral_loss
ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
Definition: cv.hpp:7422
MS_ProteoSuite
MS_ProteoSuite
ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
Definition: cv.hpp:6819
MS_charge_state
MS_charge_state
charge state: The charge state of the ion, single or multiple and positive or negatively charged.
Definition: cv.hpp:396
MS_DiART_reagent_114
MS_DiART_reagent_114
DiART reagent 114: The name of the sample labelled with the DiART reagent 114.
Definition: cv.hpp:8736
MS_SEQUEST_DescriptionLines
MS_SEQUEST_DescriptionLines
SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
Definition: cv.hpp:3525
UO_micromole
UO_micromole
micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
Definition: cv.hpp:13920
MS_proteoform_level_identification_statistic
MS_proteoform_level_identification_statistic
proteoform-level identification statistic: Identification confidence metric for a proteoform.
Definition: cv.hpp:9138
UNIMOD_Xle__Gly
UNIMOD_Xle__Gly
Xle->Gly: Leu/Ile->Gly substitution.
Definition: cv.hpp:11640
MS_coated_glass_plate
MS_coated_glass_plate
coated glass plate: Coated glass plate.
Definition: cv.hpp:6240
MS_cyclotron
MS_cyclotron
cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged ...
Definition: cv.hpp:1425
UO_area_unit
UO_area_unit
area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
Definition: cv.hpp:13944
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:13224
UNIMOD_Gln__Pro
UNIMOD_Gln__Pro
Gln->Pro: Gln->Pro substitution.
Definition: cv.hpp:10644
MS_protein_group_level_local_FDR
MS_protein_group_level_local_FDR
protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
Definition: cv.hpp:7560
MS_TOPP_software_adaptor
MS_TOPP_software_adaptor
TOPP software adaptor: Software adaptor to an external program in the TOPP software.
Definition: cv.hpp:6987
MS_ion_neutral_species_exchange_reaction_OBSOLETE
MS_ion_neutral_species_exchange_reaction_OBSOLETE
ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the...
Definition: cv.hpp:1866
MS_multi_collector
MS_multi_collector
multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
Definition: cv.hpp:675
UNIMOD_Ammonium
UNIMOD_Ammonium
Ammonium: Replacement of proton with ammonium ion.
Definition: cv.hpp:11259
MS_isotopic_ion_MS_peak
MS_isotopic_ion_MS_peak
isotopic ion MS peak: A mass spectrometry peak that represents one or more isotopic ions....
Definition: cv.hpp:9291
MS_prot_FDR_threshold
MS_prot_FDR_threshold
prot:FDR threshold: False-discovery rate threshold for proteins.
Definition: cv.hpp:4740
MS_Proteios
MS_Proteios
Proteios: Database application and analysis platform for proteomics.
Definition: cv.hpp:2460
UNIMOD_HexNAc_2_NeuAc_1_
UNIMOD_HexNAc_2_NeuAc_1_
HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
Definition: cv.hpp:12789
UNIMOD_Phe__Lys
UNIMOD_Phe__Lys
Phe->Lys: Phe->Lys substitution.
Definition: cv.hpp:11541
UNIMOD_Hex_1_Pent_2_Me_1_
UNIMOD_Hex_1_Pent_2_Me_1_
Hex(1)Pent(2)Me(1): Hex:1 Pent:2 Me:1.
Definition: cv.hpp:13641
MS_number_of_detector_counts
MS_number_of_detector_counts
number of detector counts: The number of counted events observed in one or a group of elements of a d...
Definition: cv.hpp:741
UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_
UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_
Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
Definition: cv.hpp:12933
UNIMOD_Xlink_EGS_244_
UNIMOD_Xlink_EGS_244_
Xlink:EGS[244]: Water quenched monolink of EGS cross-linker.
Definition: cv.hpp:11334
UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_
UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_
dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn —OR— Hex(2) HexNAc dHex NeuAc.
Definition: cv.hpp:12918
MS_Mascot_PTM_site_assignment_confidence
MS_Mascot_PTM_site_assignment_confidence
Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct,...
Definition: cv.hpp:6480
MS_nth_generation_product_ion_scan_OBSOLETE
MS_nth_generation_product_ion_scan_OBSOLETE
nth generation product ion scan: The specific scan functions or processes that record the appropriate...
Definition: cv.hpp:1584
UNIMOD_Xle__Asp
UNIMOD_Xle__Asp
Xle->Asp: Leu/Ile->Asp substitution.
Definition: cv.hpp:11634
UNIMOD_GGQ
UNIMOD_GGQ
GGQ: SUMOylation leaving GlyGlyGln.
Definition: cv.hpp:12096
UNIMOD_Hex_1_HexNAc_1_NeuGc_1_
UNIMOD_Hex_1_HexNAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
Definition: cv.hpp:12774
MS_structural_formula
MS_structural_formula
structural formula: A chemical formula showing the number of atoms of each element in a molecule,...
Definition: cv.hpp:3303
UNIMOD_Arg__Asn
UNIMOD_Arg__Asn
Arg->Asn: Arg->Asn substitution.
Definition: cv.hpp:11829
UNIMOD_GNLLFLACYCIGG
UNIMOD_GNLLFLACYCIGG
GNLLFLACYCIGG: Ubiquitin D (FAT10) leaving after trypsin digestion Gly-Asn-Leu-Leu-Phe-Leu-Ala-Cys-Ty...
Definition: cv.hpp:13794
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spe...
Definition: cv.hpp:5301
MS_DiART_reagent_118
MS_DiART_reagent_118
DiART reagent 118: The name of the sample labelled with the DiART reagent 118.
Definition: cv.hpp:8748
MS_TopMG_proteoform_level_cutoff_type
MS_TopMG_proteoform_level_cutoff_type
TopMG:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform ...
Definition: cv.hpp:9246
MS_Shimadzu_MALDI_TOF_instrument_model
MS_Shimadzu_MALDI_TOF_instrument_model
Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
Definition: cv.hpp:2466
UNIMOD_Lys__Thr
UNIMOD_Lys__Thr
Lys->Thr: Lys->Thr substitution.
Definition: cv.hpp:10539
UNIMOD_Xlink_BS2G_96_
UNIMOD_Xlink_BS2G_96_
Xlink:BS2G[96]: Intact BS2-G crosslinker.
Definition: cv.hpp:13566
UNIMOD_LG_Hlactam_K
UNIMOD_LG_Hlactam_K
LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
Definition: cv.hpp:10317
UNIMOD_Retinylidene
UNIMOD_Retinylidene
Retinylidene: Retinal.
Definition: cv.hpp:10071
MS_FIB
MS_FIB
FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ion...
Definition: cv.hpp:1923
MS_Percolator_features
MS_Percolator_features
Percolator:features: List of Percolator features that were used in processing the peptide matches....
Definition: cv.hpp:5694
MS_scan_m_z_range__OBSOLETE
MS_scan_m_z_range__OBSOLETE
scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
Definition: cv.hpp:1500
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_
dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
Definition: cv.hpp:13233
MS_Thermo_nativeID_format__combined_spectra
MS_Thermo_nativeID_format__combined_spectra
Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combi...
Definition: cv.hpp:8400
MS_MALDI_LTQ_Orbitrap
MS_MALDI_LTQ_Orbitrap
MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
Definition: cv.hpp:2601
UNIMOD_Ethoxyformyl
UNIMOD_Ethoxyformyl
Ethoxyformyl: Ethoxyformylation.
Definition: cv.hpp:11121
UO_parts_per_hundred
UO_parts_per_hundred
parts per hundred: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:14298
MS_matrix_solution
MS_matrix_solution
matrix solution: Describes the chemical solution used as matrix.
Definition: cv.hpp:3198
MS_two_dimensional_gas_chromatography_with_fixed_modulation_time
MS_two_dimensional_gas_chromatography_with_fixed_modulation_time
two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography whe...
Definition: cv.hpp:6705
UNIMOD_Asp__Tyr
UNIMOD_Asp__Tyr
Asp->Tyr: Asp->Tyr substitution.
Definition: cv.hpp:10449
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_
Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:13047
UO_electric_charge
UO_electric_charge
electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a bo...
Definition: cv.hpp:14454
MS_modification_specificity_peptide_N_term
MS_modification_specificity_peptide_N_term
modification specificity peptide N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:4002
MS_MaxQuant_peptide_counts__all_
MS_MaxQuant_peptide_counts__all_
MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
Definition: cv.hpp:6108
MS_Phenyx_Peptides1
MS_Phenyx_Peptides1
Phenyx:Peptides1: First number of phenyx result "#Peptides".
Definition: cv.hpp:4581
MS_Peer_reviewed_dataset
MS_Peer_reviewed_dataset
Peer-reviewed dataset: Dataset has been peer-reviewed somehow.
Definition: cv.hpp:8985
MS_non_classical_ion_OBSOLETE
MS_non_classical_ion_OBSOLETE
non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation....
Definition: cv.hpp:1686
UNIMOD_NEIAA
UNIMOD_NEIAA
NEIAA: N-ethyl iodoacetamide-d0.
Definition: cv.hpp:9783
UO_microeinstein_per_square_meter_per_second
UO_microeinstein_per_square_meter_per_second
microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per...
Definition: cv.hpp:14277
MS_frag__c_ion___NH3
MS_frag__c_ion___NH3
frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
Definition: cv.hpp:4953
UO_microcurie_per_milliliter
UO_microcurie_per_milliliter
microcurie per milliliter: A unit of radioactivity concentration which is equal to one micro curie in...
Definition: cv.hpp:14760
MS_MRM_OBSOLETE
MS_MRM_OBSOLETE
MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:615
UNIMOD_Phe__CamCys
UNIMOD_Phe__CamCys
Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
Definition: cv.hpp:11094
UNIMOD_PyruvicAcidIminyl
UNIMOD_PyruvicAcidIminyl
PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
Definition: cv.hpp:10176
MS_TOPP_SpectraFilterMarkerMower
MS_TOPP_SpectraFilterMarkerMower
TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
Definition: cv.hpp:6864
MS_peak_list_scans
MS_peak_list_scans
peak list scans: A list of scan numbers and or scan ranges associated with a peak list....
Definition: cv.hpp:3078
MS_frag__precursor_ion___H2O
MS_frag__precursor_ion___H2O
frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
Definition: cv.hpp:4968
UNIMOD_Ala__Xle
UNIMOD_Ala__Xle
Ala->Xle: Ala->Leu/Ile substitution.
Definition: cv.hpp:11397
MS_small_molecule_confidence_measure
MS_small_molecule_confidence_measure
small molecule confidence measure: The confidence score produced by a small molecule analysis softwar...
Definition: cv.hpp:9087
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_
dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
Definition: cv.hpp:13284
MS_peptide_level_statistical_threshold
MS_peptide_level_statistical_threshold
peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
Definition: cv.hpp:7902
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_1_
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Ac_1_
Hex(5)HexNAc(4)NeuAc(1)Ac(1): Hex(5) HexNAc(4) NeuAc Ac.
Definition: cv.hpp:13743
MS_QuantAnalysis
MS_QuantAnalysis
QuantAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2877
MS_collision_energy_ramp_start
MS_collision_energy_ramp_start
collision energy ramp start: Collision energy at the start of the collision energy ramp.
Definition: cv.hpp:6483
UNIMOD_Lys__His
UNIMOD_Lys__His
Lys->His: Lys->His substitution.
Definition: cv.hpp:11661
UNIMOD_Xlink_DSS_138_
UNIMOD_Xlink_DSS_138_
Xlink:DSS[138]: Intact DSS/BS3 crosslinker.
Definition: cv.hpp:13548
UO_nanovolt
UO_nanovolt
nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12]...
Definition: cv.hpp:14547
MS_isotope_ratio_mass_spectrometry_OBSOLETE
MS_isotope_ratio_mass_spectrometry_OBSOLETE
isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes o...
Definition: cv.hpp:1272
UNIMOD_Xle__Cys
UNIMOD_Xle__Cys
Xle->Cys: Leu/Ile->Cys substitution.
Definition: cv.hpp:11631
MS_ProteoAnnotator_count_alternative_peptides
MS_ProteoAnnotator_count_alternative_peptides
ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to no...
Definition: cv.hpp:7875
MS_SEQUEST_spscore
MS_SEQUEST_spscore
SEQUEST:spscore: The SEQUEST result 'SpScore'.
Definition: cv.hpp:7191
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
Definition: cv.hpp:5367
MS_SEQUEST_sort_by_Sequence
MS_SEQUEST_sort_by_Sequence
SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
Definition: cv.hpp:3687
MS_mass_chromatogram
MS_mass_chromatogram
mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a functi...
Definition: cv.hpp:3126
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks ar...
Definition: cv.hpp:5292
MS_Agilent_MassHunter_format
MS_Agilent_MassHunter_format
Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains...
Definition: cv.hpp:4932
UNIMOD_Xlink_BMOE
UNIMOD_Xlink_BMOE
Xlink:BMOE: Intact or monolink BMOE crosslinker.
Definition: cv.hpp:10974
UNIMOD_Methyl_2H_3__Acetyl_2H_3_
UNIMOD_Methyl_2H_3__Acetyl_2H_3_
Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:12228
UNIMOD_Diisopropylphosphate
UNIMOD_Diisopropylphosphate
Diisopropylphosphate: O-Diisopropylphosphorylation.
Definition: cv.hpp:10026
MS_array_detector
MS_array_detector
array detector: Detector comprising several ion collection elements, arranged in a line or grid where...
Definition: cv.hpp:1608
MS_ADC
MS_ADC
ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an el...
Definition: cv.hpp:687
MS_mzidLib
MS_mzidLib
mzidLib: A library of Java routines for manipulating mzIdentML files.
Definition: cv.hpp:7158
UO_sievert
UO_sievert
sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by ...
Definition: cv.hpp:14211
MS_modification_specificity_rule
MS_modification_specificity_rule
modification specificity rule: The specificity rules for the modifications applied by the search engi...
Definition: cv.hpp:3651
UNIMOD_Glu__Xle
UNIMOD_Glu__Xle
Glu->Xle: Glu->Leu/Ile substitution.
Definition: cv.hpp:11499
PEFF_Crc64
PEFF_Crc64
Crc64: Sequence checksum in crc64.
Definition: cv.hpp:246
MS_GCT_Premier
MS_GCT_Premier
GCT Premier: Waters oa-ToF based GCT Premier.
Definition: cv.hpp:5724
UNIMOD_Xlink_DMP_140_
UNIMOD_Xlink_DMP_140_
Xlink:DMP[140]: Water quenched monolink of DMP crosslinker.
Definition: cv.hpp:11346
MS_peptide_labeling_state
MS_peptide_labeling_state
peptide labeling state: A state description of how a peptide might be isotopically or isobarically la...
Definition: cv.hpp:3372
UNIMOD_Asp__Lys
UNIMOD_Asp__Lys
Asp->Lys: Asp->Lys substitution.
Definition: cv.hpp:11466
UO_micromolal
UO_micromolal
micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
Definition: cv.hpp:14013
MS_QSTAR_XL
MS_QSTAR_XL
QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
Definition: cv.hpp:2643
MS_SMILES_string
MS_SMILES_string
SMILES string: The simplified molecular input line entry specification or SMILES is a specification f...
Definition: cv.hpp:3306
MS_offset_voltage
MS_offset_voltage
offset voltage: The potential difference between two adjacent interface voltages affecting in-source ...
Definition: cv.hpp:6051
MS_XCMS_maxo
MS_XCMS_maxo
XCMS:maxo: Feature intensity produced by XCMS findPeaks() from maximum peak intensity.
Definition: cv.hpp:8916
MS_LIFT
MS_LIFT
LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy...
Definition: cv.hpp:6432
MS_SEQUEST_total_ions
MS_SEQUEST_total_ions
SEQUEST:total ions: The SEQUEST result 'Total Ions'.
Definition: cv.hpp:3945
MS_multiple_reaction_monitoring_OBSOLETE
MS_multiple_reaction_monitoring_OBSOLETE
multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:612
UNIMOD_HexN
UNIMOD_HexN
HexN: Hexosamine.
Definition: cv.hpp:10260
UNIMOD_Cytopiloyne
UNIMOD_Cytopiloyne
Cytopiloyne: Nucleophilic addtion to cytopiloyne.
Definition: cv.hpp:9837
MS_TOPP_feature_finder
MS_TOPP_feature_finder
TOPP feature finder: Feature finder component of the TOPP software.
Definition: cv.hpp:6942
UO_half_life
UO_half_life
half life: A time unit which represents the period over which the activity or concentration of a spec...
Definition: cv.hpp:14253
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application search...
Definition: cv.hpp:5352
MS_Phenyx_XML_format
MS_Phenyx_XML_format
Phenyx XML format: Phenyx open XML file format.
Definition: cv.hpp:4788
MS_molecular_beam_mass_spectrometry_OBSOLETE
MS_molecular_beam_mass_spectrometry_OBSOLETE
molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced int...
Definition: cv.hpp:1071
MS_scan_number_s__OBSOLETE
MS_scan_number_s__OBSOLETE
scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult....
Definition: cv.hpp:3804
MS_amaZon_Speed_ETD
MS_amaZon_Speed_ETD
amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray,...
Definition: cv.hpp:7350
UNIMOD_DiLeu4plex
UNIMOD_DiLeu4plex
DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
Definition: cv.hpp:12159
UO_femtomolar
UO_femtomolar
femtomolar: A unit of molarity which is equal to 10^[-15] M.
Definition: cv.hpp:14022
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr para...
Definition: cv.hpp:5538
UNIMOD_Xle__Thr
UNIMOD_Xle__Thr
Xle->Thr: Leu/Ile->Thr substitution.
Definition: cv.hpp:10530
MS_PRIDE_Converter2
MS_PRIDE_Converter2
PRIDE Converter2: Java software designed to convert one of several proteomics identification results ...
Definition: cv.hpp:7455
MS_raw_data_file
MS_raw_data_file
raw data file: Describes the type of file and its content.
Definition: cv.hpp:2340
MS_flow_rate_array
MS_flow_rate_array
flow rate array: A data array of flow rate measurements.
Definition: cv.hpp:3159
MS_TripleTOF_6600
MS_TripleTOF_6600
TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition: cv.hpp:8052
MS_Phenyx_Instrument_Type
MS_Phenyx_Instrument_Type
Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
Definition: cv.hpp:4533
MS_MapAligner_OBSOLETE
MS_MapAligner_OBSOLETE
MapAligner: Corrects retention time distortions between maps.
Definition: cv.hpp:2949
UNIMOD_Val__Asn
UNIMOD_Val__Asn
Val->Asn: Val->Asn substitution.
Definition: cv.hpp:11901
MS_faraday_cup
MS_faraday_cup
faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically ...
Definition: cv.hpp:663
MS_InChIKey
MS_InChIKey
InChIKey: Unique chemical structure identifier for chemical compounds.
Definition: cv.hpp:9105
UNIMOD_HexNAc_2_Sulf_1_
UNIMOD_HexNAc_2_Sulf_1_
HexNAc(2)Sulf(1): HexNAc(2) Sulf.
Definition: cv.hpp:13644
MS_TOPP_SpectraFilterBernNorm
MS_TOPP_SpectraFilterBernNorm
TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
Definition: cv.hpp:6861
UNIMOD_BITC
UNIMOD_BITC
BITC: Benzyl isothiocyanate.
Definition: cv.hpp:11238
UO_mole_fraction
UO_mole_fraction
mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of th...
Definition: cv.hpp:14031
UNIMOD_Brij35
UNIMOD_Brij35
Brij35: Brij 35 synthetic polymer terminus.
Definition: cv.hpp:13458
UNIMOD_Hex_7_HexNAc_2_Phos_2_
UNIMOD_Hex_7_HexNAc_2_Phos_2_
Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
Definition: cv.hpp:12591
UNIMOD_Nitrosyl
UNIMOD_Nitrosyl
Nitrosyl: S-nitrosylation.
Definition: cv.hpp:9846
UNIMOD_Lys__Tyr
UNIMOD_Lys__Tyr
Lys->Tyr: Lys->Tyr substitution.
Definition: cv.hpp:11676
UNIMOD_Ala__Glu
UNIMOD_Ala__Glu
Ala->Glu: Ala->Glu substitution.
Definition: cv.hpp:10413
MS_microchannel_plate_detector
MS_microchannel_plate_detector
microchannel plate detector: A thin plate that contains a closely spaced array of channels that each ...
Definition: cv.hpp:669
MS_Waters_nativeID_format
MS_Waters_nativeID_format
Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegative...
Definition: cv.hpp:2979
PEFF_Conflict
PEFF_Conflict
Conflict: Sequence conflict; a UniProtKB term.
Definition: cv.hpp:243
UNIMOD_Glu__Asn
UNIMOD_Glu__Asn
Glu->Asn: Glu->Asn substitution.
Definition: cv.hpp:11505
UNIMOD_Cation_Fe_II_
UNIMOD_Cation_Fe_II_
Cation:Fe[II]: Replacement of 2 protons by iron.
Definition: cv.hpp:11193
MS_H_Score_threshold
MS_H_Score_threshold
H-Score threshold: Threshold for H-score PTM site location score.
Definition: cv.hpp:8130
MS_MRMaid
MS_MRMaid
MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of i...
Definition: cv.hpp:7107
MS_TruTOF
MS_TruTOF
TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
Definition: cv.hpp:5826
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
Definition: cv.hpp:5655
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_
dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
Definition: cv.hpp:12333
MS_quality_estimation_with_implicite_decoy_sequences
MS_quality_estimation_with_implicite_decoy_sequences
quality estimation with implicite decoy sequences: Decoy entries are generated during the search,...
Definition: cv.hpp:4761
UNIMOD_Xlink_DSS_155_
UNIMOD_Xlink_DSS_155_
Xlink:DSS[155]: Ammonium-quenched monolink of DSS/BS3 crosslinker.
Definition: cv.hpp:13407
UNIMOD_PET
UNIMOD_PET
PET: Phosphorylation to pyridyl thiol.
Definition: cv.hpp:9825
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
Definition: cv.hpp:13071
MS_peak_targeting_suitability_rank
MS_peak_targeting_suitability_rank
peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suit...
Definition: cv.hpp:3426
MS_area_peak_picking
MS_area_peak_picking
area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to...
Definition: cv.hpp:3090
MS_experimental_condition__case_
MS_experimental_condition__case_
experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
Definition: cv.hpp:5844
UNIMOD_Asn__Phe
UNIMOD_Asn__Phe
Asn->Phe: Asn->Phe substitution.
Definition: cv.hpp:11727
MS_SEQUEST_NormalizeXCorrValues
MS_SEQUEST_NormalizeXCorrValues
SEQUEST:NormalizeXCorrValues:
Definition: cv.hpp:3576
MS_detector_attribute
MS_detector_attribute
detector attribute: Detector attribute recognized as a value.
Definition: cv.hpp:2043
MS_Voyager_DE_PRO
MS_Voyager_DE_PRO
Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
Definition: cv.hpp:975
UNIMOD_NBS
UNIMOD_NBS
NBS: Shimadzu NBS-12C.
Definition: cv.hpp:9720
MS_field_ionization
MS_field_ionization
field ionization: The removal of electrons from any species by interaction with a high electric field...
Definition: cv.hpp:1242
UNIMOD_ethylsulfonylethyl
UNIMOD_ethylsulfonylethyl
ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
Definition: cv.hpp:12258
MS_B
MS_B
B (magnetic field strength): A property of space that produces a force on a charged particle equal to...
Definition: cv.hpp:339
UO_steradian
UO_steradian
steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere b...
Definition: cv.hpp:14178
MS_Xevo_G2_Q_Tof
MS_Xevo_G2_Q_Tof
Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
Definition: cv.hpp:5763
MS_quadratic
MS_quadratic
quadratic: The mass scan is done in quadratic mode.
Definition: cv.hpp:603
UNIMOD_Asn__Val
UNIMOD_Asn__Val
Asn->Val: Asn->Val substitution.
Definition: cv.hpp:11745
MS_Platform_ICP
MS_Platform_ICP
Platform ICP: Waters Platform ICP MS.
Definition: cv.hpp:918
MS_micrOTOF_Q_III
MS_micrOTOF_Q_III
micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI,...
Definition: cv.hpp:7347
UO_mass_volume_percentage
UO_mass_volume_percentage
mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in...
Definition: cv.hpp:14289
MS_ProteomeDiscoverer_max_equal_modifications
MS_ProteomeDiscoverer_max_equal_modifications
ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
Definition: cv.hpp:7413
UNIMOD_dHex_1_HexNAc_4_
UNIMOD_dHex_1_HexNAc_4_
dHex(1)HexNAc(4): DHex HexNAc(4).
Definition: cv.hpp:12912
MS_MS_Amanda_csv_format
MS_MS_Amanda_csv_format
MS Amanda csv format: MS Amanda csv output format.
Definition: cv.hpp:7827
UNIMOD_Gly__Trp
UNIMOD_Gly__Trp
Gly->Trp: Gly->Trp substitution.
Definition: cv.hpp:10497
MS_MaxQuant_peptide_counts__unique_
MS_MaxQuant_peptide_counts__unique_
MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
Definition: cv.hpp:6105
MS_SCIEX_TOF_TOF_nativeID_format
MS_SCIEX_TOF_TOF_nativeID_format
SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:s...
Definition: cv.hpp:4845
MS_____DE__
MS_____DE__
(?=[DE]): Regular expression for Asp-N-ambic.
Definition: cv.hpp:4242
UNIMOD_Cys__Phe
UNIMOD_Cys__Phe
Cys->Phe: Cys->Phe substitution.
Definition: cv.hpp:10419
MS_Panorama_Public_dataset_URI
MS_Panorama_Public_dataset_URI
Panorama Public dataset URI: URI that allows the access to one dataset in the Panorama Public reposit...
Definition: cv.hpp:9042
UNIMOD_Ethanedithiol
UNIMOD_Ethanedithiol
Ethanedithiol: EDT.
Definition: cv.hpp:9765
UNIMOD_HexNAc_2_dHex_1_
UNIMOD_HexNAc_2_dHex_1_
HexNAc(2)dHex(1): HexNAc2dHex1.
Definition: cv.hpp:9666
MS_FindPairs
MS_FindPairs
FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
Definition: cv.hpp:6639
MS_TOPP_MascotAdapterOnline
MS_TOPP_MascotAdapterOnline
TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mas...
Definition: cv.hpp:6996
MS_coefficient_of_variation
MS_coefficient_of_variation
coefficient of variation: Variation of a set of signal measurements calculated as the standard deviat...
Definition: cv.hpp:6063
MS_smoothing
MS_smoothing
smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real p...
Definition: cv.hpp:2427
MS_SymBiot_I
MS_SymBiot_I
SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
Definition: cv.hpp:948
UNIMOD_Trimethyl_2H_9_
UNIMOD_Trimethyl_2H_9_
Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
Definition: cv.hpp:12234
UNIMOD_Unknown_216
UNIMOD_Unknown_216
Unknown:216: Unidentified modification of 216.1002 found in open search.
Definition: cv.hpp:13761
UO_stone
UO_stone
stone: An imperial mass unit which is equivalent to 6,350.293,18 grams, or 14 pounds.
Definition: cv.hpp:14898
UNIMOD_Hex_5_Phos_3_
UNIMOD_Hex_5_Phos_3_
Hex(5)Phos(3): Hex(5) Phos(3).
Definition: cv.hpp:12957
MS_PEAKS_inChorusPeptideScore
MS_PEAKS_inChorusPeptideScore
PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
Definition: cv.hpp:7794
MS_spectrum_identification_statistical_threshold
MS_spectrum_identification_statistical_threshold
spectrum identification statistical threshold: Estimated statistical threshold used for spectrum iden...
Definition: cv.hpp:8172
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
Definition: cv.hpp:13254
MS_direct_liquid_introduction
MS_direct_liquid_introduction
direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or des...
Definition: cv.hpp:1188
MS_xiFDR
MS_xiFDR
xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
Definition: cv.hpp:8082
UNIMOD_HN3_mustard
UNIMOD_HN3_mustard
HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
Definition: cv.hpp:12279
MS_supplemental_collision_induced_dissociation
MS_supplemental_collision_induced_dissociation
supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisiona...
Definition: cv.hpp:8496
MS_product_ion_attribute
MS_product_ion_attribute
product ion attribute: Fragmentation information like ion types.
Definition: cv.hpp:4089
UNIMOD_Unknown_234
UNIMOD_Unknown_234
Unknown:234: Unidentified modification of 234.0742 found in open search.
Definition: cv.hpp:13764
MS_surface_induced_reaction_OBSOLETE
MS_surface_induced_reaction_OBSOLETE
surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either...
Definition: cv.hpp:1899
MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE
MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE
ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modific...
Definition: cv.hpp:6684
MS_additional_description_OBSOLETE
MS_additional_description_OBSOLETE
additional description: Terms to describe Additional.
Definition: cv.hpp:1977
UNIMOD_dHex_2_Hex_2_HexNAc_1_
UNIMOD_dHex_2_Hex_2_HexNAc_1_
dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
Definition: cv.hpp:12858
MS_median
MS_median
median: Median function.
Definition: cv.hpp:9072
MS_Progenesis_peptide_normalised_abundance
MS_Progenesis_peptide_normalised_abundance
Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by ...
Definition: cv.hpp:6087
MS_product_ion_intensity_standard_deviation
MS_product_ion_intensity_standard_deviation
product ion intensity standard deviation: Standard deviation of product ion intensity in a collection...
Definition: cv.hpp:7125
UO_nanogram_per_milliliter
UO_nanogram_per_milliliter
nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided...
Definition: cv.hpp:14622
UNIMOD_Hex_1_HexNAc_1_dHex_1_
UNIMOD_Hex_1_HexNAc_1_dHex_1_
Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
Definition: cv.hpp:9663
MS_Comet
MS_Comet
Comet: Comet open-source sequence search engine developed at the University of Washington.
Definition: cv.hpp:7200
UNIMOD_Hex_3_HexNAc_2_Pent_1_
UNIMOD_Hex_3_HexNAc_2_Pent_1_
Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
Definition: cv.hpp:12438
MS_WIFF_nativeID_format
MS_WIFF_nativeID_format
WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeIn...
Definition: cv.hpp:2982
MS_quistor_OBSOLETE
MS_quistor_OBSOLETE
quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap....
Definition: cv.hpp:1458
UO_pixels_per_millimeter
UO_pixels_per_millimeter
pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels ...
Definition: cv.hpp:14526
MS_e_2_mass_spectrum
MS_e_2_mass_spectrum
e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric se...
Definition: cv.hpp:1554
MS_ions_series_considered_in_search
MS_ions_series_considered_in_search
ions series considered in search: The description of the DEPRECATED ion fragment series (including ch...
Definition: cv.hpp:3675
UO_pixels_per_inch
UO_pixels_per_inch
pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a compute...
Definition: cv.hpp:14523
MS_Thermo_RAW_format
MS_Thermo_RAW_format
Thermo RAW format: Thermo Scientific RAW file format.
Definition: cv.hpp:2298
UNIMOD_Label_15N_2_
UNIMOD_Label_15N_2_
Label:15N(2): 15N(2).
Definition: cv.hpp:11271
UO_katal
UO_katal
katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second,...
Definition: cv.hpp:14163
UNIMOD_Xlink_DMP_122_
UNIMOD_Xlink_DMP_122_
Xlink:DMP[122]: Intact DMP crosslinker.
Definition: cv.hpp:13584
MS_param__a_ion_H2O_DEPRECATED
MS_param__a_ion_H2O_DEPRECATED
param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
Definition: cv.hpp:3903
MS_Mascot_matched_ions
MS_Mascot_matched_ions
Mascot:matched ions: The Mascot result 'Matched ions'.
Definition: cv.hpp:3978
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative fac...
Definition: cv.hpp:5502
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_
Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc —OR— Hex(2) HexNAc(3) dHex NeuGc —OR— Hex(2) HexNAc(4...
Definition: cv.hpp:13134
MS_sample_attribute
MS_sample_attribute
sample attribute: Sample properties that are associated with a value.
Definition: cv.hpp:2253
UNIMOD_Asp__Xle
UNIMOD_Asp__Xle
Asp->Xle: Asp->Leu/Ile substitution.
Definition: cv.hpp:11463
MS_Andromeda_result_format
MS_Andromeda_result_format
Andromeda result format: Andromeda result file output format.
Definition: cv.hpp:8181
MS_TOPP_SpectraFilterSqrtMower
MS_TOPP_SpectraFilterSqrtMower
TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square r...
Definition: cv.hpp:6879
MS_chrom_format
MS_chrom_format
chrom format: The Lipid Data Analyzer native chrom format.
Definition: cv.hpp:9321
UNIMOD_BEMAD_ST
UNIMOD_BEMAD_ST
BEMAD_ST: Beta elimination of modified S or T followed by Michael addition of DTT.
Definition: cv.hpp:10866
UNIMOD_Pro__Asp
UNIMOD_Pro__Asp
Pro->Asp: Pro->Asp substitution.
Definition: cv.hpp:11754
UNIMOD_Arg__His
UNIMOD_Arg__His
Arg->His: Arg->His substitution.
Definition: cv.hpp:10677
MS_intensity_of_precursor_ion
MS_intensity_of_precursor_ion
intensity of precursor ion: The intensity of the precursor ion.
Definition: cv.hpp:3882
MS_FFR
MS_FFR
FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic ...
Definition: cv.hpp:1035
UNIMOD_Asp__Phe
UNIMOD_Asp__Phe
Asp->Phe: Asp->Phe substitution.
Definition: cv.hpp:11460
UNIMOD_Cys__Arg
UNIMOD_Cys__Arg
Cys->Arg: Cys->Arg substitution.
Definition: cv.hpp:10431
UNIMOD_Carboxy
UNIMOD_Carboxy
Carboxy: Carboxylation.
Definition: cv.hpp:9897
MS_SCIEX_TOF_TOF_database
MS_SCIEX_TOF_TOF_database
SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
Definition: cv.hpp:4848
MS_mass_table_options
MS_mass_table_options
mass table options: Root node for options for the mass table used.
Definition: cv.hpp:4470
MS_ionizing_collision_OBSOLETE
MS_ionizing_collision_OBSOLETE
ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are ...
Definition: cv.hpp:1854
pwiz
Definition: ChromatogramList_Filter.hpp:36
MS_frag__c_ion
MS_frag__c_ion
frag: c ion: Fragmentation information, type of product: c ion.
Definition: cv.hpp:4125
MS_SpectraFilter_OBSOLETE
MS_SpectraFilter_OBSOLETE
SpectraFilter: Applies a filter to peak spectra.
Definition: cv.hpp:2964
MS_metabolic_labeling_14N___15N_quantitation_analysis
MS_metabolic_labeling_14N___15N_quantitation_analysis
metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light vers...
Definition: cv.hpp:5931
MS_MSQuant_PTM_score
MS_MSQuant_PTM_score
MSQuant:PTM-score: The PTM score from MSQuant software.
Definition: cv.hpp:6363
MS_X_Tandem_expect
MS_X_Tandem_expect
X!Tandem:expect: The X!Tandem expectation value.
Definition: cv.hpp:4398
MS_m_z_array
MS_m_z_array
m/z array: A data array of m/z values.
Definition: cv.hpp:2148
UO_milligram_per_kilogram_per_day
UO_milligram_per_kilogram_per_day
milligram per kilogram per day: A dosage unit which is equal to 1 milligram per day of a toxic or pha...
Definition: cv.hpp:14730
MS_Compound_Discoverer
MS_Compound_Discoverer
Compound Discoverer: Metabolomics analysis software from Thermo Fisher Scientific.
Definition: cv.hpp:9063
MS_MS1_label_based_proteingroup_level_quantitation
MS_MS1_label_based_proteingroup_level_quantitation
MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
Definition: cv.hpp:6444
UNIMOD_Pro__Gly
UNIMOD_Pro__Gly
Pro->Gly: Pro->Gly substitution.
Definition: cv.hpp:11763
UNIMOD_GIST_Quat
UNIMOD_GIST_Quat
GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
Definition: cv.hpp:9519
MS_linear_ion_trap
MS_linear_ion_trap
linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by...
Definition: cv.hpp:1434
UNIMOD_maleimide
UNIMOD_maleimide
maleimide: Maleimide.
Definition: cv.hpp:10938
UO_square_angstrom
UO_square_angstrom
square angstrom: An area unit which is equal to an area enclosed by a square with sides each 1 angstr...
Definition: cv.hpp:14769
MS_OpenXQuest_combined_score
MS_OpenXQuest_combined_score
OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.
Definition: cv.hpp:8502
UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_
UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_
dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
Definition: cv.hpp:13395
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that thres...
Definition: cv.hpp:4719
MS_API_150EX
MS_API_150EX
API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
Definition: cv.hpp:795
UO_nanogray
UO_nanogray
nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] ...
Definition: cv.hpp:14229
MS_M_H_ion_1002821
MS_M_H_ion_1002821
M-H ion: M-H ion from negative ion mode (M in the property ionMass denotes the mass of the neutral mo...
Definition: cv.hpp:8886
UNIMOD_Cytopiloyne_water
UNIMOD_Cytopiloyne_water
Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
Definition: cv.hpp:9840
MS_inclusive_low_intensity_threshold
MS_inclusive_low_intensity_threshold
inclusive low intensity threshold: Threshold at or below which some action is taken.
Definition: cv.hpp:3048
MS_Bruker_Daltonics_solarix_series
MS_Bruker_Daltonics_solarix_series
Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap,...
Definition: cv.hpp:5049
MS_Phenyx_Default_Parent_Charge
MS_Phenyx_Default_Parent_Charge
Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
Definition: cv.hpp:4539
UNIMOD_Pyridylethyl
UNIMOD_Pyridylethyl
Pyridylethyl: S-pyridylethylation.
Definition: cv.hpp:9444
MS_pulsed_q_dissociation
MS_pulsed_q_dissociation
pulsed q dissociation: A process that involves precursor ion activation at high Q,...
Definition: cv.hpp:2454
MS_TopMG_spectral_cutoff_value
MS_TopMG_spectral_cutoff_value
TopMG:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectrum...
Definition: cv.hpp:9243
MS_Q_Exactive_Plus
MS_Q_Exactive_Plus
Q Exactive Plus: Thermo Scientific Q Exactive Plus.
Definition: cv.hpp:8358
MS_regular_expression_for_modification_localization_scoring
MS_regular_expression_for_modification_localization_scoring
).
Definition: cv.hpp:7965
MS_spark_ionization
MS_spark_ionization
spark ionization: The formation of ions from a solid material by an intermittent electrical discharge...
Definition: cv.hpp:1785
MS_confident_distinct_peptide_sequences
MS_confident_distinct_peptide_sequences
confident distinct peptide sequences: This counts the number of distinct peptide sequences....
Definition: cv.hpp:3753
MS_counts_per_second
MS_counts_per_second
counts per second: The number of counted events observed per second in one or a group of elements of ...
Definition: cv.hpp:3141
MS_TIC_chromatogram
MS_TIC_chromatogram
TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion cu...
Definition: cv.hpp:1110
UO_poise
UO_poise
poise: A viscosity unit which is equal to one dyne second per square centimeter.
Definition: cv.hpp:14571
pwiz::cv::CV
Information about an ontology or CV source and a short 'lookup' tag to refer to.
Definition: cv.hpp:14916
MS_3200_QTRAP
MS_3200_QTRAP
3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
Definition: cv.hpp:2625
UNIMOD_EHD_diphenylpentanone
UNIMOD_EHD_diphenylpentanone
EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
Definition: cv.hpp:12150
UNIMOD_Label_2H_3_
UNIMOD_Label_2H_3_
Label:2H(3): Trideuteration.
Definition: cv.hpp:9822
MS_proline_endopeptidase
MS_proline_endopeptidase
proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
Definition: cv.hpp:6162
MS_normalized_XIC_area
MS_normalized_XIC_area
normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition: cv.hpp:5991
UNIMOD_Delta_H_6_C_7_O_4_
UNIMOD_Delta_H_6_C_7_O_4_
Delta:H(6)C(7)O(4): Methylglyoxal-derived tetrahydropyrimidine.
Definition: cv.hpp:13629
UNIMOD_NEIAA_2H_5_
UNIMOD_NEIAA_2H_5_
NEIAA:2H(5): N-ethyl iodoacetamide-d5.
Definition: cv.hpp:9786
MS_fragment_mass_type_average
MS_fragment_mass_type_average
fragment mass type average: Mass type setting for fragment mass was average isotopic.
Definition: cv.hpp:4191
MS_ion_pair_formation_OBSOLETE
MS_ion_pair_formation_OBSOLETE
ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment ...
Definition: cv.hpp:1746
pwiz::cv::CV::URI
std::string URI
the URI for the resource.
Definition: cv.hpp:14921
MS_Libra
MS_Libra
Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-cha...
Definition: cv.hpp:7323
MS_HiRes_ESI
MS_HiRes_ESI
HiRes ESI: IonSpec HiResESI MS.
Definition: cv.hpp:852
MS_frag__immonium_ion
MS_frag__immonium_ion
frag: immonium ion: Fragmentation information, type of product: immonium ion.
Definition: cv.hpp:4149
MS_external_offset
MS_external_offset
external offset: The position in the external data where the array begins.
Definition: cv.hpp:8949
MS_inlet_attribute
MS_inlet_attribute
inlet attribute: Inlet properties that are associated with a value.
Definition: cv.hpp:6564
UNIMOD_Glu__Pro
UNIMOD_Glu__Pro
Glu->Pro: Glu->Pro substitution.
Definition: cv.hpp:11508
UNIMOD_Glucuronyl
UNIMOD_Glucuronyl
Glucuronyl: Hexuronic acid.
Definition: cv.hpp:9504
UNIMOD_HCysteinyl
UNIMOD_HCysteinyl
HCysteinyl: S-homocysteinylation.
Definition: cv.hpp:12054
PEFF_ProteoformDb
PEFF_ProteoformDb
ProteoformDb: Proteoform database flag.
Definition: cv.hpp:171
MS_penning_ionization
MS_penning_ionization
penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous spe...
Definition: cv.hpp:1770
UO_turbidity_unit
UO_turbidity_unit
turbidity unit: A unit used to indicate the clarity of water or other solutions or suspensions,...
Definition: cv.hpp:14742
UNIMOD_Unknown_248
UNIMOD_Unknown_248
Unknown:248: Unidentified modification of 248.1986 found in open search.
Definition: cv.hpp:13767
MS_ProteomeDiscoverer_Static_Modification
MS_ProteomeDiscoverer_Static_Modification
ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.
Definition: cv.hpp:5349
MS_ProteomeDiscoverer_automatic_workload
MS_ProteomeDiscoverer_automatic_workload
ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
Definition: cv.hpp:7404
UO_radian
UO_radian
radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc ...
Definition: cv.hpp:14172
UNIMOD_Lys__AminoadipicAcid
UNIMOD_Lys__AminoadipicAcid
Lys->AminoadipicAcid: Alpha-amino adipic acid.
Definition: cv.hpp:10074
MS_area_normalization
MS_area_normalization
area normalization: Normalization of areas below the curves.
Definition: cv.hpp:6429
MS_Mascot_Parser
MS_Mascot_Parser
Mascot Parser: Mascot Parser was used to analyze the spectra.
Definition: cv.hpp:4839
UNIMOD_Glu__Cys
UNIMOD_Glu__Cys
Glu->Cys: Glu->Cys substitution.
Definition: cv.hpp:11490
MS_protein_group_level_global_FDR
MS_protein_group_level_global_FDR
protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
Definition: cv.hpp:7557
MS_Surveyor_PDA
MS_Surveyor_PDA
Surveyor PDA: Surveyor PDA.
Definition: cv.hpp:2532
MS_protein_group_level_quantification_datatype
MS_protein_group_level_quantification_datatype
protein group-level quantification datatype: The data type of the value reported in a QuantLayer for ...
Definition: cv.hpp:8637
MS_number_of_decoy_sequences
MS_number_of_decoy_sequences
number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach i...
Definition: cv.hpp:7761
MS_TOPP_MzTabExporter
MS_TOPP_MzTabExporter
TOPP MzTabExporter: Exports various XML formats to an mzTab file.
Definition: cv.hpp:6921
UNIMOD_Biotin_PEO_Amine
UNIMOD_Biotin_PEO_Amine
Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
Definition: cv.hpp:9873
UNIMOD_Cys__Lys
UNIMOD_Cys__Lys
Cys->Lys: Cys->Lys substitution.
Definition: cv.hpp:11436
UNIMOD_Hex_9_HexNAc_2_
UNIMOD_Hex_9_HexNAc_2_
Hex(9)HexNAc(2): Hex(9) HexNAc(2).
Definition: cv.hpp:12678
MS_precursor_ion_spectrum
MS_precursor_ion_spectrum
precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product...
Definition: cv.hpp:1593
UNIMOD_Met__Phe
UNIMOD_Met__Phe
Met->Phe: Met->Phe substitution.
Definition: cv.hpp:11691
MS_excludes_supersede_includes
MS_excludes_supersede_includes
excludes supersede includes: A priority setting specifying that excluded targets have priority over t...
Definition: cv.hpp:3471
UO_count_unit
UO_count_unit
count unit: A dimensionless unit which denotes a simple count of things.
Definition: cv.hpp:14364
UNIMOD_Hypusine
UNIMOD_Hypusine
Hypusine: Hypusine.
Definition: cv.hpp:10068
MS_PeptideShaker_PSM_confidence
MS_PeptideShaker_PSM_confidence
PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
Definition: cv.hpp:7851
UNIMOD_Val__Trp
UNIMOD_Val__Trp
Val->Trp: Val->Trp substitution.
Definition: cv.hpp:11919
MS_MS_Numpress_positive_integer_compression_followed_by_zlib_compression
MS_MS_Numpress_positive_integer_compression_followed_by_zlib_compression
MS-Numpress positive integer compression followed by zlib compression: Compression using MS-Numpress ...
Definition: cv.hpp:8661
MS_ProLuCID
MS_ProLuCID
ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps...
Definition: cv.hpp:8241
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the give...
Definition: cv.hpp:5310
MS_TopMG
MS_TopMG
TopMG: A mass graph-based approach for the identification of modified proteoforms using top-down tand...
Definition: cv.hpp:9132
MS_METLIN
MS_METLIN
METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human...
Definition: cv.hpp:2727
MS_MaRiMba
MS_MaRiMba
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3318
MS_contact_toll_free_phone_number
MS_contact_toll_free_phone_number
contact toll-free phone number: Toll-free phone number of the contact person or organization.
Definition: cv.hpp:5685
UNIMOD_Phosphopantetheine
UNIMOD_Phosphopantetheine
Phosphopantetheine: Phosphopantetheine.
Definition: cv.hpp:9489
MS_AXIMA_QIT
MS_AXIMA_QIT
AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
Definition: cv.hpp:2484
UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:12909
UNIMOD_SPITC_13C_6_
UNIMOD_SPITC_13C_6_
SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
Definition: cv.hpp:10269
MS_magnetic_field_strength
MS_magnetic_field_strength
magnetic field strength: A property of space that produces a force on a charged particle equal to qv ...
Definition: cv.hpp:336
UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_
UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_
dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:13095
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5490
UNIMOD_Lys__Pro
UNIMOD_Lys__Pro
Lys->Pro: Lys->Pro substitution.
Definition: cv.hpp:11664
MS_peak_picking
MS_peak_picking
peak picking: Spectral peak processing conducted on the acquired data to convert profile data to cent...
Definition: cv.hpp:369
UNIMOD_Met__AspSA
UNIMOD_Met__AspSA
Met->AspSA: Methionine oxidation to aspartic semialdehyde.
Definition: cv.hpp:13590
UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_
UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_
dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
Definition: cv.hpp:12432
MS_SEQUEST_sort_by_P
MS_SEQUEST_sort_by_P
SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
Definition: cv.hpp:3636
UNIMOD_Val__Lys
UNIMOD_Val__Lys
Val->Lys: Val->Lys substitution.
Definition: cv.hpp:11898
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
Definition: cv.hpp:13200
UNIMOD_Ala__Asp
UNIMOD_Ala__Asp
Ala->Asp: Ala->Asp substitution.
Definition: cv.hpp:10404
MS_proteogenomics_attribute
MS_proteogenomics_attribute
proteogenomics attribute: Proteogenomics attribute.
Definition: cv.hpp:8364
MS_maXis_4G
MS_maXis_4G
maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7284
MS_fed_supply_electrospray
MS_fed_supply_electrospray
fed supply electrospray: The sprayer is continuously fed with sample.
Definition: cv.hpp:6249
MS_SEQUEST_sort_by_Sf
MS_SEQUEST_sort_by_Sf
SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
Definition: cv.hpp:3690
MS_esquireControl
MS_esquireControl
esquireControl: Bruker software for data acquisition.
Definition: cv.hpp:2832
MS_box_smoothing
MS_box_smoothing
box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two o...
Definition: cv.hpp:3036
MS_QIT
MS_QIT
QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional...
Definition: cv.hpp:552
MS_MS_Numpress_short_logged_float_compression_followed_by_zlib_compression
MS_MS_Numpress_short_logged_float_compression_followed_by_zlib_compression
MS-Numpress short logged float compression followed by zlib compression: Compression using MS-Numpres...
Definition: cv.hpp:8664
UNIMOD_QAT_2H_3_
UNIMOD_QAT_2H_3_
QAT:2H(3): APTA d3.
Definition: cv.hpp:9753
MS_selected_precursor_m_z
MS_selected_precursor_m_z
selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
Definition: cv.hpp:7149
MS_ProteoWizard_chainsaw
MS_ProteoWizard_chainsaw
ProteoWizard chainsaw: Filters and processes protein sequence databases.
Definition: cv.hpp:7068
UNIMOD_OxArgBiotin
UNIMOD_OxArgBiotin
OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:9588
MS_noise_array
MS_noise_array
noise array: A data array of noise values.
Definition: cv.hpp:8646
UO_roentgen
UO_roentgen
roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive an...
Definition: cv.hpp:14208
MS_SI_OBSOLETE
MS_SI_OBSOLETE
SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface wi...
Definition: cv.hpp:1380
UNIMOD_Ala__Val
UNIMOD_Ala__Val
Ala->Val: Ala->Val substitution.
Definition: cv.hpp:10416
MS_false_localization_rate
MS_false_localization_rate
false localization rate: Estimation of the false localization rate for modification site assignment.
Definition: cv.hpp:7590
MS_resolution_array
MS_resolution_array
resolution array: A data array of resolution values.
Definition: cv.hpp:8040
MS_multiphoton_dissociation
MS_multiphoton_dissociation
multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a ...
Definition: cv.hpp:1884
MS_neutral_loss_OBSOLETE
MS_neutral_loss_OBSOLETE
neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
Definition: cv.hpp:3666
MS_database_IPI_chicken
MS_database_IPI_chicken
database IPI_chicken: International Protein Index database for Gallus gallus sequences.
Definition: cv.hpp:4266
UO_einstein_per_square_meter_per_second
UO_einstein_per_square_meter_per_second
einstein per square meter per second: An irradiance unit which is equal to one einstein per square me...
Definition: cv.hpp:14265
MS_ultrafleXtreme
MS_ultrafleXtreme
ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
Definition: cv.hpp:5037
UNIMOD_Label_13C_6_15N_1_
UNIMOD_Label_13C_6_15N_1_
Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
Definition: cv.hpp:10818
UNIMOD_Thr__Val
UNIMOD_Thr__Val
Thr->Val: Thr->Val substitution.
Definition: cv.hpp:11883
UNIMOD_Cys__His
UNIMOD_Cys__His
Cys->His: Cys->His substitution.
Definition: cv.hpp:11430
UNIMOD_Hex_3_HexNAc_7_
UNIMOD_Hex_3_HexNAc_7_
Hex(3)HexNAc(7): Hex(3) HexNAc(7).
Definition: cv.hpp:12705
UO_cells_per_milliliter
UO_cells_per_milliliter
cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 millil...
Definition: cv.hpp:14400
MS_plasma_desorption
MS_plasma_desorption
plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutra...
Definition: cv.hpp:759
UNIMOD_3_deoxyglucosone
UNIMOD_3_deoxyglucosone
3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
Definition: cv.hpp:11184
pwiz::cv::CVTermInfo::cvid
CVID cvid
Definition: cv.hpp:14945
MS_SILAC_quantitation_analysis
MS_SILAC_quantitation_analysis
SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
Definition: cv.hpp:5919
MS_spectrum_title_OBSOLETE
MS_spectrum_title_OBSOLETE
spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from diff...
Definition: cv.hpp:4647
MS_SRM_transition_ID
MS_SRM_transition_ID
SRM transition ID: Identifier for an SRM transition in an external document describing additional inf...
Definition: cv.hpp:5901
MS_MS1_feature_maximum_intensity
MS_MS1_feature_maximum_intensity
MS1 feature maximum intensity: Maximum intensity of MS1 feature.
Definition: cv.hpp:5943
MS_role_type
MS_role_type
role type: Role of a Person or Organization.
Definition: cv.hpp:4218
UNIMOD_NEM_2H_5_
UNIMOD_NEM_2H_5_
NEM:2H(5): D5 N-ethylmaleimide on cysteines.
Definition: cv.hpp:10947
UO_square_meter
UO_square_meter
square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter lon...
Definition: cv.hpp:14043
MS_Pegasus
MS_Pegasus
Pegasus: LECO GC time-of-flight mass spectrometer.
Definition: cv.hpp:5823
MS_6140_Quadrupole_LC_MS
MS_6140_Quadrupole_LC_MS
6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:2010
MS_mean_of_spectra
MS_mean_of_spectra
mean of spectra: Spectra is combined by calculating the mean of the spectra.
Definition: cv.hpp:2334
UNIMOD_Phe__Asn
UNIMOD_Phe__Asn
Phe->Asn: Phe->Asn substitution.
Definition: cv.hpp:11547
UNIMOD_Tyr__Lys
UNIMOD_Tyr__Lys
Tyr->Lys: Tyr->Lys substitution.
Definition: cv.hpp:11973
UNIMOD_dHex_2_Hex_2_HexNAc_6_Sulf_1_
UNIMOD_dHex_2_Hex_2_HexNAc_6_Sulf_1_
dHex(2)Hex(2)HexNAc(6)Sulf(1): DHex(2) Hex(2) HexNAc(6) Sulf.
Definition: cv.hpp:13740
UNIMOD_Hex_6_HexNAc_2_Phos_1_
UNIMOD_Hex_6_HexNAc_2_Phos_1_
Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
Definition: cv.hpp:12495
UO_linear_density_unit
UO_linear_density_unit
linear density unit: A density unit which is a standard measure of the mass exerting an influence on ...
Definition: cv.hpp:14346
MS_small_molecule_quantification_datatype
MS_small_molecule_quantification_datatype
small molecule quantification datatype: The value reported in a small molecule quantification.
Definition: cv.hpp:9081
UNIMOD_Hex_6_HexNAc_3_
UNIMOD_Hex_6_HexNAc_3_
Hex(6)HexNAc(3): Hex(6) HexNAc(3).
Definition: cv.hpp:12546
UNIMOD_Dimethylaminoethyl
UNIMOD_Dimethylaminoethyl
Dimethylaminoethyl: Cys alkylation by dimethylaminoethyl halide.
Definition: cv.hpp:13479
MS_Arg_C
MS_Arg_C
Arg-C: Endoproteinase Arg-C.
Definition: cv.hpp:4311
UO_femtomole
UO_femtomole
femtomole: A substance unit equal to 10^[-15] mol.
Definition: cv.hpp:13932
UNIMOD_Phe__Ala
UNIMOD_Phe__Ala
Phe->Ala: Phe->Ala substitution.
Definition: cv.hpp:11526
MS_DBExporter
MS_DBExporter
DBExporter: Exports data from an OpenMS database to a file.
Definition: cv.hpp:2931
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral l...
Definition: cv.hpp:5283
MS_ProteomeDiscoverer_Mascot_Significance_Middle
MS_ProteomeDiscoverer_Mascot_Significance_Middle
ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a deco...
Definition: cv.hpp:7134
UNIMOD_Sulfide
UNIMOD_Sulfide
Sulfide: Persulfide.
Definition: cv.hpp:10173
MS_Conversion_to_mzData
MS_Conversion_to_mzData
Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file form...
Definition: cv.hpp:2247
pwiz::cv::CVTermInfo::propertyValues
std::multimap< std::string, std::string > propertyValues
Definition: cv.hpp:14956
UO_mass_unit
UO_mass_unit
mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
Definition: cv.hpp:13809
MS_base_peak
MS_base_peak
base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to t...
Definition: cv.hpp:1008
UNIMOD_Hex_1_HexNAc_3_NeuAc_1_
UNIMOD_Hex_1_HexNAc_3_NeuAc_1_
Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
Definition: cv.hpp:12969
MS_ion_mobility_spectrometry_OBSOLETE
MS_ion_mobility_spectrometry_OBSOLETE
ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas un...
Definition: cv.hpp:1260
MS_DI
MS_DI
DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vap...
Definition: cv.hpp:1179
UNIMOD_Hex_9_HexNAc_1_
UNIMOD_Hex_9_HexNAc_1_
Hex(9)HexNAc(1): Hex(9) HexNAc.
Definition: cv.hpp:13713
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12729
MS_Genespring_MS
MS_Genespring_MS
Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
Definition: cv.hpp:2721
MS_sample_concentration
MS_sample_concentration
sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
Definition: cv.hpp:279
UNIMOD_Hex_5_HexNAc_1_
UNIMOD_Hex_5_HexNAc_1_
Hex(5)HexNAc(1): Hex(5) HexNAc.
Definition: cv.hpp:12945
MS_biological_replicate
MS_biological_replicate
biological replicate: The study variable is 'biological replicate'. This means, the run was generated...
Definition: cv.hpp:5841
MS_single_peak_list_nativeID_format
MS_single_peak_list_nativeID_format
single peak list nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2997
MS_API_100
MS_API_100
API 100: Applied Biosystems/MDS SCIEX API 100 MS.
Definition: cv.hpp:8208
UO_rad
UO_rad
rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
Definition: cv.hpp:14205
MS_PeptideShaker_protein_group_confidence
MS_PeptideShaker_protein_group_confidence
PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
Definition: cv.hpp:7863
UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_
UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
Definition: cv.hpp:13155
MS_SCIEX_software
MS_SCIEX_software
SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2739
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor r...
Definition: cv.hpp:5670
UNIMOD_Phe__Gly
UNIMOD_Phe__Gly
Phe->Gly: Phe->Gly substitution.
Definition: cv.hpp:11535
MS_mass_analyzer
MS_mass_analyzer
mass analyzer: Terms used to describe the Analyzer.
Definition: cv.hpp:1938
MS_product_ion_OBSOLETE
MS_product_ion_OBSOLETE
product ion: An ion formed as the product of a reaction involving a particular precursor ion....
Definition: cv.hpp:1596
MS_transition_validation_method
MS_transition_validation_method
transition validation method: The strategy used to validate that a transition is effective.
Definition: cv.hpp:3435
MS_6220_Time_of_Flight_LC_MS
MS_6220_Time_of_Flight_LC_MS
6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:2694
UNIMOD_Label_2H_6_15N_1_
UNIMOD_Label_2H_6_15N_1_
Label:2H(6)15N(1): Label:2H(6)15N(1).
Definition: cv.hpp:12318
UNIMOD_Xlink_DTSSP_192_
UNIMOD_Xlink_DTSSP_192_
Xlink:DTSSP[192]: Water quenched monolink of DSP/DTSSP crosslinker.
Definition: cv.hpp:11340
UNIMOD_Delta_H_6_C_6_O_1_
UNIMOD_Delta_H_6_C_6_O_1_
Delta:H(6)C(6)O(1): Acrolein addition +94.
Definition: cv.hpp:9768
MS_MS_Numpress_linear_prediction_compression
MS_MS_Numpress_linear_prediction_compression
MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compressio...
Definition: cv.hpp:7386
MS_constant_neutral_loss_spectrum
MS_constant_neutral_loss_spectrum
constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a ...
Definition: cv.hpp:1545
MS_protein_level_local_FDR
MS_protein_level_local_FDR
protein-level local FDR: Estimation of the local false discovery rate of proteins.
Definition: cv.hpp:7542
UNIMOD_Methyl_Acetyl_2H_3_
UNIMOD_Methyl_Acetyl_2H_3_
Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:10929
UNIMOD_LRGG_methyl
UNIMOD_LRGG_methyl
LRGG+methyl: LeumethylArgGlyGly.
Definition: cv.hpp:13431
UNIMOD_Arg__Thr
UNIMOD_Arg__Thr
Arg->Thr: Arg->Thr substitution.
Definition: cv.hpp:10668
MS_small_molecule_list_attribute
MS_small_molecule_list_attribute
small molecule list attribute: Attribute describing a small molecule list.
Definition: cv.hpp:6798
UNIMOD_Hex_5_HexNAc_2_Phos_1_
UNIMOD_Hex_5_HexNAc_2_Phos_1_
Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
Definition: cv.hpp:12459
MS_ProteinExtractor_MascotUseIdentityScore
MS_ProteinExtractor_MascotUseIdentityScore
ProteinExtractor:MascotUseIdentityScore:
Definition: cv.hpp:4698
MS_hydrazideTMT_quantitation_analysis
MS_hydrazideTMT_quantitation_analysis
hydrazideTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive h...
Definition: cv.hpp:8697
MS_detector_resolution
MS_detector_resolution
detector resolution: The resolving power of the detector to detect the smallest difference between tw...
Definition: cv.hpp:348
PEFF_VariantComplex
PEFF_VariantComplex
VariantComplex: Simple sequence variation of a single amino acid change. A change to a stop codon is ...
Definition: cv.hpp:261
MS_matrix_assisted_laser_desorption_ionization
MS_matrix_assisted_laser_desorption_ionization
matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are ...
Definition: cv.hpp:519
MS_dye_laser
MS_dye_laser
dye-laser: Dye lasers use an organic dye as the gain medium.
Definition: cv.hpp:3252
MS_fringing_field
MS_fringing_field
fringing field: The electric or magnetic field that extends from the edge of a sector,...
Definition: cv.hpp:1491
MS_______E_E_
MS_______E_E_
(?<=[^E]E): Regular expression for glutamyl endopeptidase.
Definition: cv.hpp:6300
UO_image_resolution_unit
UO_image_resolution_unit
image resolution unit: An information unit which is a standard measure of the detail an image holds.
Definition: cv.hpp:14505
MS_EM
MS_EM
EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:1215
MS_Acquity_SQD
MS_Acquity_SQD
Acquity SQD: Waters quadrupole based Acquity SQD.
Definition: cv.hpp:5775
MS_database_sequence_details
MS_database_sequence_details
database sequence details: Details about a single database sequence.
Definition: cv.hpp:4434
UNIMOD_GeranylGeranyl
UNIMOD_GeranylGeranyl
GeranylGeranyl: Geranyl-geranyl.
Definition: cv.hpp:9486
MS_Paragon__background_correction
MS_Paragon__background_correction
Paragon: background correction: The Paragon method setting that controls whether the 'Background Corr...
Definition: cv.hpp:7737
MS_conversion_software
MS_conversion_software
conversion software: Computer software primarily designed to convert data represented in one format t...
Definition: cv.hpp:7449
MS_Scaffold_nativeID_format
MS_Scaffold_nativeID_format
Scaffold nativeID format: Scaffold native ID format.
Definition: cv.hpp:5085
MS_iTRAQ_reagent
MS_iTRAQ_reagent
iTRAQ reagent: Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent.
Definition: cv.hpp:8319
MS_ECD
MS_ECD
ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts wit...
Definition: cv.hpp:1197
MS_Conversion_to_mzMLb
MS_Conversion_to_mzMLb
Conversion to mzMLb: Conversion of a file format to Proteomics Standards Initiative mzMLb file format...
Definition: cv.hpp:8940
MS_ProteinExtractor_MascotWeighting
MS_ProteinExtractor_MascotWeighting
ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the sea...
Definition: cv.hpp:4701
MS_CI
MS_CI
CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:498
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
ProteomeDiscoverer:Source Files old: Input pepXML files (old).
Definition: cv.hpp:5631
UNIMOD_Lys__Ser
UNIMOD_Lys__Ser
Lys->Ser: Lys->Ser substitution.
Definition: cv.hpp:11667
UNIMOD_Hex_1_HexNAc_1_NeuAc_3_
UNIMOD_Hex_1_HexNAc_1_NeuAc_3_
Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
Definition: cv.hpp:13053
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_
dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
Definition: cv.hpp:12666
MS_Bruker_software
MS_Bruker_software
Bruker software: Bruker software for data acquisition and analysis.
Definition: cv.hpp:2745
MS_Mascot_UseUnigeneClustering
MS_Mascot_UseUnigeneClustering
Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and...
Definition: cv.hpp:4380
MS_6520B_Q_TOF_LC_MS
MS_6520B_Q_TOF_LC_MS
6520B Q-TOF LC/MS: The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition: cv.hpp:8775
MS_parent_mass_type_mono
MS_parent_mass_type_mono
parent mass type mono: Mass type setting for parent mass was monoisotopic.
Definition: cv.hpp:4062
MS_Shimadzu_Biotech_database_entity
MS_Shimadzu_Biotech_database_entity
Shimadzu Biotech database entity: Shimadzu Biotech format.
Definition: cv.hpp:3498
UNIMOD_Dipyridyl
UNIMOD_Dipyridyl
Dipyridyl: Cys modified with dipy ligand.
Definition: cv.hpp:12060
UNIMOD_Met__Arg
UNIMOD_Met__Arg
Met->Arg: Met->Arg substitution.
Definition: cv.hpp:10590
MS_maXis
MS_maXis
maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:5028
MS_MALDI_matrix_application
MS_MALDI_matrix_application
MALDI matrix application: Attributes to describe the technique how the sample is prepared with the ma...
Definition: cv.hpp:3192
MS_isolation_window_attribute
MS_isolation_window_attribute
isolation window attribute: Isolation window parameter.
Definition: cv.hpp:3063
MS_electron_induced_excitation_in_organics_OBSOLETE
MS_electron_induced_excitation_in_organics_OBSOLETE
electron-induced excitation in organics: The reaction of an ion with an electron in which the transla...
Definition: cv.hpp:1206
MS_study_variable_average_function
MS_study_variable_average_function
study variable average function: Function used to calculate the study variable quantification value.
Definition: cv.hpp:9069
MS_LipiDex
MS_LipiDex
LipiDex: An integrated software package for high-confidence lipid identification.
Definition: cv.hpp:9345
MS_lab_head
MS_lab_head
lab head: The scientist responsible for personnel, grants, and instrumentation in a functional labora...
Definition: cv.hpp:7446
UO_surface_tension_unit
UO_surface_tension_unit
surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of ...
Definition: cv.hpp:14556
UNIMOD_Pro__Pyrrolidone
UNIMOD_Pro__Pyrrolidone
Pro->Pyrrolidone: Pyrrolidone from Proline.
Definition: cv.hpp:10044
MS_taxonomy__scientific_name
MS_taxonomy__scientific_name
taxonomy: scientific name: This term is used if a scientific name is specified, e....
Definition: cv.hpp:4803
UNIMOD_Cation_Al_III_
UNIMOD_Cation_Al_III_
Cation:Al[III]: Replacement of 3 protons by aluminium.
Definition: cv.hpp:13578
MS_baseline_array
MS_baseline_array
baseline array: A data array of signal baseline values (the signal in the absence of analytes).
Definition: cv.hpp:8043
UNIMOD_Gln__pyro_Glu
UNIMOD_Gln__pyro_Glu
Gln->pyro-Glu: Pyro-glu from Q.
Definition: cv.hpp:9435
MS_consecutive_reaction_monitoring_OBSOLETE_1000327
MS_consecutive_reaction_monitoring_OBSOLETE_1000327
consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separatio...
Definition: cv.hpp:1551
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr para...
Definition: cv.hpp:5547
PEFF_ID
PEFF_ID
ID: UniProtKB specific Protein identifier ID; a UniProtKB term.
Definition: cv.hpp:252
MS_compact
MS_compact
compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7287
MS_matrix_solution_concentration
MS_matrix_solution_concentration
matrix solution concentration: Concentration of the chemical solution used as matrix.
Definition: cv.hpp:3201
MS_Isotopomeric_ion_OBSOLETE
MS_Isotopomeric_ion_OBSOLETE
Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their p...
Definition: cv.hpp:1674
MS_TOPP_SpectraFilterScaler
MS_TOPP_SpectraFilterScaler
TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
Definition: cv.hpp:6876
MS_LECO_instrument_model
MS_LECO_instrument_model
LECO instrument model: LECO instrument model.
Definition: cv.hpp:5814
UNIMOD_dHex_2_Hex_3_HexNAc_5_
UNIMOD_dHex_2_Hex_3_HexNAc_5_
dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
Definition: cv.hpp:13281
UNIMOD_Hex_2_HexNAc_1_Me_1_
UNIMOD_Hex_2_HexNAc_1_Me_1_
Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
Definition: cv.hpp:12405
UNIMOD_Arg__GluSA
UNIMOD_Arg__GluSA
Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
Definition: cv.hpp:9987
MS_acquisition_parameter
MS_acquisition_parameter
acquisition parameter: Parameters used in the mass spectrometry acquisition.
Definition: cv.hpp:6285
MS_MGF_raw_scans_OBSOLETE
MS_MGF_raw_scans_OBSOLETE
MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw sca...
Definition: cv.hpp:4644
MS_Cliquid
MS_Cliquid
Cliquid: SCIEX Cliquid software for data analysis and quantitation.
Definition: cv.hpp:2685
UNIMOD_Lys__Arg
UNIMOD_Lys__Arg
Lys->Arg: Lys->Arg substitution.
Definition: cv.hpp:10554
UNIMOD_Label_13C_5_15N_1_
UNIMOD_Label_13C_5_15N_1_
Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
Definition: cv.hpp:9831
MS_4000_QTRAP
MS_4000_QTRAP
4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
Definition: cv.hpp:783
MS_No_PTMs_are_included_in_the_dataset
MS_No_PTMs_are_included_in_the_dataset
No PTMs are included in the dataset: No post-translational-modifications are been included in the ide...
Definition: cv.hpp:9015
MS_DiART_reagent_119
MS_DiART_reagent_119
DiART reagent 119: The name of the sample labelled with the DiART reagent 119.
Definition: cv.hpp:8751
MS_ion_series_considered_in_search
MS_ion_series_considered_in_search
ion series considered in search: The description of the ion fragment series (including charges and ne...
Definition: cv.hpp:7869
MS_ReAdW
MS_ReAdW
ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML....
Definition: cv.hpp:2232
UNIMOD_Dimethyl_2H_4_
UNIMOD_Dimethyl_2H_4_
Dimethyl:2H(4): DiMethyl-CHD2.
Definition: cv.hpp:9762
MS_accurate_mass_OBSOLETE
MS_accurate_mass_OBSOLETE
accurate mass: An experimentally determined mass that is can be to determine a unique elemental formu...
Definition: cv.hpp:996
UNIMOD_SulfanilicAcid
UNIMOD_SulfanilicAcid
SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
Definition: cv.hpp:9864
UNIMOD_dichlorination
UNIMOD_dichlorination
dichlorination: Dichlorination.
Definition: cv.hpp:11151
UNIMOD_Hex_3_HexNAc_5_Sulf_1_
UNIMOD_Hex_3_HexNAc_5_Sulf_1_
Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
Definition: cv.hpp:12543
MS_numerator_data_type_attribute
MS_numerator_data_type_attribute
numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
Definition: cv.hpp:6900
MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE
MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modif...
Definition: cv.hpp:5580
MS_LTQ_Orbitrap_Velos
MS_LTQ_Orbitrap_Velos
LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
Definition: cv.hpp:5640
UNIMOD_Trp__Lys
UNIMOD_Trp__Lys
Trp->Lys: Trp->Lys substitution.
Definition: cv.hpp:11940
MS_LipidQA
MS_LipidQA
LipidQA: Lipid qualitative/quantitative analysis software for identification and quantitation of comp...
Definition: cv.hpp:9363
MS_Analyst
MS_Analyst
Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
Definition: cv.hpp:2262
UNIMOD_Cys__Gly
UNIMOD_Cys__Gly
Cys->Gly: Cys->Gly substitution.
Definition: cv.hpp:10434
MS_MassHunter_Qualitative_Analysis
MS_MassHunter_Qualitative_Analysis
MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
Definition: cv.hpp:2709
UNIMOD_Hex_1_HexNAc_4_dHex_1_Sulf_1_
UNIMOD_Hex_1_HexNAc_4_dHex_1_Sulf_1_
Hex(1)HexNAc(4)dHex(1)Sulf(1): Sulf dHex Hex HexNAc(4).
Definition: cv.hpp:13686
MS_Progenesis_protein_group_normalised_abundance
MS_Progenesis_protein_group_normalised_abundance
Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups ...
Definition: cv.hpp:8004
MS_instrument_additional_description_OBSOLETE
MS_instrument_additional_description_OBSOLETE
instrument additional description: Additional terms to describe the instrument as outlined in the mas...
Definition: cv.hpp:1953
UNIMOD_PhosphoHex_2_
UNIMOD_PhosphoHex_2_
PhosphoHex(2): H1O3P1Hex2.
Definition: cv.hpp:12342
UNIMOD_Arg__Val
UNIMOD_Arg__Val
Arg->Val: Arg->Val substitution.
Definition: cv.hpp:11832
MS_peptide_raw_area_OBSOLETE
MS_peptide_raw_area_OBSOLETE
peptide raw area: Peptide raw area.
Definition: cv.hpp:3849
MS_No_fixed_modifications_searched
MS_No_fixed_modifications_searched
No fixed modifications searched: No fixed modifications are included as a parameter for the search,...
Definition: cv.hpp:7809
UNIMOD_Cation_Cu_I_
UNIMOD_Cation_Cu_I_
Cation:Cu[I]: Replacement of proton by copper.
Definition: cv.hpp:10371
MS_retention_time_window_lower_offset
MS_retention_time_window_lower_offset
retention time window lower offset: The extent of the retention time window in time units below the t...
Definition: cv.hpp:3456
MS_1200_series_LC_MSD_VL
MS_1200_series_LC_MSD_VL
1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrom...
Definition: cv.hpp:2034
MS_collision_gas
MS_collision_gas
collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
Definition: cv.hpp:1830
MS_Paragon__sample_type
MS_Paragon__sample_type
Paragon: sample type: The Paragon method setting indicating the type of sample at the high level,...
Definition: cv.hpp:7716
UO_joule
UO_joule
joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object ...
Definition: cv.hpp:14139
UNIMOD_Pro__Pyrrolidinone
UNIMOD_Pro__Pyrrolidinone
Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
Definition: cv.hpp:10020
UNIMOD_dHex_1_Hex_7_HexNAc_4_
UNIMOD_dHex_1_Hex_7_HexNAc_4_
dHex(1)Hex(7)HexNAc(4): Fucosylated biantennary + 2 alphaGal.
Definition: cv.hpp:13467
MS_MyCompoundID
MS_MyCompoundID
MyCompoundID: Metabolite identification tool MyCompoundID.
Definition: cv.hpp:9066
UNIMOD_HydroxymethylOP
UNIMOD_HydroxymethylOP
HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
Definition: cv.hpp:11046
UO_atto
UO_atto
atto: A prefix in the metric system denoting a factor of 10 to the power of -18.
Definition: cv.hpp:14709
MS_customization
MS_customization
customization: Free text description of a single customization made to the instrument; for several mo...
Definition: cv.hpp:360
UNIMOD_BEMAD_C
UNIMOD_BEMAD_C
BEMAD_C: Beta elimination of alkylated Cys followed by Michael addition of DTT.
Definition: cv.hpp:10869
MS_constant_neutral_mass_gain_spectrum
MS_constant_neutral_mass_gain_spectrum
constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1542
MS_photomultiplier
MS_photomultiplier
photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then a...
Definition: cv.hpp:678
MS_molecular_formula
MS_molecular_formula
molecular formula: A chemical compound formula expressing the number of atoms of each element present...
Definition: cv.hpp:3300
MS_ProteoWizard_software
MS_ProteoWizard_software
ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by...
Definition: cv.hpp:2505
MS_analyzer
MS_analyzer
analyzer (mass analyzer): Terms used to describe the Analyzer.
Definition: cv.hpp:1941
UNIMOD_Chlorination
UNIMOD_Chlorination
Chlorination: Chlorination of tyrosine residues.
Definition: cv.hpp:11148
MS_Shimadzu_instrument_model
MS_Shimadzu_instrument_model
Shimadzu instrument model: Shimadzu corporation instrument model.
Definition: cv.hpp:711
MS_scan
MS_scan
scan: Function or process of the mass spectrometer where it records a spectrum.
Definition: cv.hpp:1905
MS_kinetic_method_OBSOLETE
MS_kinetic_method_OBSOLETE
kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedur...
Definition: cv.hpp:1869
MS_ProteinScape_IntensityCoverage
MS_ProteinScape_IntensityCoverage
ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calcul...
Definition: cv.hpp:4920
MS_Q_Exactive
MS_Q_Exactive
Q Exactive: Thermo Scientific Q Exactive.
Definition: cv.hpp:6147
UNIMOD_Label_13C_6_15N_2_
UNIMOD_Label_13C_6_15N_2_
Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
Definition: cv.hpp:9813
MS_TOPP_SpectraFilterParentPeakMower
MS_TOPP_SpectraFilterParentPeakMower
TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
Definition: cv.hpp:6873
MS_PSM_level_global_FDR
MS_PSM_level_global_FDR
PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
Definition: cv.hpp:7500
MS_stable_ion_OBSOLETE
MS_stable_ion_OBSOLETE
stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate pri...
Definition: cv.hpp:1707
MS_group_member_with_undefined_relationship_OR_ortholog_protein
MS_group_member_with_undefined_relationship_OR_ortholog_protein
group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relations...
Definition: cv.hpp:5193
UO_unit_of_normality
UO_unit_of_normality
unit of normality: A unit of concentration which highlights the chemical nature of salts.
Definition: cv.hpp:14025
MS_SCIEX_TOF_TOF_T2D_nativeID_format
MS_SCIEX_TOF_TOF_T2D_nativeID_format
SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:5076
MS_Shimadzu_Corporation_software
MS_Shimadzu_Corporation_software
Shimadzu Corporation software: Shimadzu Corporation software.
Definition: cv.hpp:5070
PEFF_DatabaseDescription
PEFF_DatabaseDescription
DatabaseDescription: Short Description of the PEFF.
Definition: cv.hpp:165
MS_pre_ionization_state_OBSOLETE
MS_pre_ionization_state_OBSOLETE
pre-ionization state: An electronic state capable of undergoing auto-Ionization.
Definition: cv.hpp:1776
MS_static_field
MS_static_field
static field: An electric or magnetic field that does not change in time.
Definition: cv.hpp:1521
MS_linked_scan_at_constant_b_e_OBSOLETE
MS_linked_scan_at_constant_b_e_OBSOLETE
linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrom...
Definition: cv.hpp:1560
UNIMOD_dHex_1_Hex_4_
UNIMOD_dHex_1_Hex_4_
dHex(1)Hex(4): Hex4dHex1.
Definition: cv.hpp:12246
MS_intermediate_analysis_format
MS_intermediate_analysis_format
intermediate analysis format: Type of the source file, the mzIdentML was created from.
Definition: cv.hpp:3609
MS_ESA
MS_ESA
ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates,...
Definition: cv.hpp:1221
UNIMOD_Gly__Asn
UNIMOD_Gly__Asn
Gly->Asn: Gly->Asn substitution.
Definition: cv.hpp:11580
MS_tandem_mass_spectrometer_OBSOLETE
MS_tandem_mass_spectrometer_OBSOLETE
tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
Definition: cv.hpp:1467
UNIMOD_Ala__Ser
UNIMOD_Ala__Ser
Ala->Ser: Ala->Ser substitution.
Definition: cv.hpp:10398
MS_ACQUITY_UPLC_H_Class
MS_ACQUITY_UPLC_H_Class
ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
Definition: cv.hpp:5700
UO_normal
UO_normal
normal: A unit of concentration which is one gram equivalent of a solute per liter of solution....
Definition: cv.hpp:14028
MS_mattauch_herzog_geometry_OBSOLETE
MS_mattauch_herzog_geometry_OBSOLETE
mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflectio...
Definition: cv.hpp:1446
UNIMOD_Iodoacetanilide
UNIMOD_Iodoacetanilide
Iodoacetanilide: Iodoacetanilide derivative.
Definition: cv.hpp:12303
MS_SRM_spectrum
MS_SRM_spectrum
SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/...
Definition: cv.hpp:2391
MS_p_value_OBSOLETE
MS_p_value_OBSOLETE
p-value: Quality estimation by p-value.
Definition: cv.hpp:4008
UNIMOD_Xlink_DST_114_
UNIMOD_Xlink_DST_114_
Xlink:DST[114]: Intact DST crosslinker.
Definition: cv.hpp:13557
UNIMOD_Saligenin
UNIMOD_Saligenin
Saligenin: O-toluene.
Definition: cv.hpp:12015
UNIMOD_unimod_root_node
UNIMOD_unimod_root_node
unimod root node: The root node of the unimod modifications ontology.
Definition: cv.hpp:9369
UNIMOD_GIST_Quat_2H_6_
UNIMOD_GIST_Quat_2H_6_
GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
Definition: cv.hpp:9525
MS_UniProtKB_XML_sequence_format
MS_UniProtKB_XML_sequence_format
UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
Definition: cv.hpp:8439
UNIMOD_Label_13C_6_15N_2__Acetyl
UNIMOD_Label_13C_6_15N_2__Acetyl
Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
Definition: cv.hpp:10992
UNIMOD_Trp__Ala
UNIMOD_Trp__Ala
Trp->Ala: Trp->Ala substitution.
Definition: cv.hpp:11925
MS_full_scan_OBSOLETE
MS_full_scan_OBSOLETE
full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
Definition: cv.hpp:2100
MS_protein_level_PSM_counts
MS_protein_level_PSM_counts
protein level PSM counts: The number of spectra identified for this protein in spectral counting.
Definition: cv.hpp:6906
UNIMOD_Gly__Ala
UNIMOD_Gly__Ala
Gly->Ala: Gly->Ala substitution.
Definition: cv.hpp:10491
MS_Andromeda
MS_Andromeda
Andromeda: Andromeda is a peptide search engine.
Definition: cv.hpp:7461
MS_protein_value__mean_of_peptide_ratios
MS_protein_value__mean_of_peptide_ratios
protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide rat...
Definition: cv.hpp:5994
MS_APPI_OBSOLETE
MS_APPI_OBSOLETE
APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the r...
Definition: cv.hpp:1143
MS_TopMG_thread_number
MS_TopMG_thread_number
TopMG:thread number: Number of threads used in TopMG.
Definition: cv.hpp:9255
MS_SEQUEST_sort_by_Ref
MS_SEQUEST_sort_by_Ref
SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
Definition: cv.hpp:3645
MS_SEQUEST_consensus_score
MS_SEQUEST_consensus_score
SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
Definition: cv.hpp:3948
UNIMOD_Hex_7_HexNAc_2_
UNIMOD_Hex_7_HexNAc_2_
Hex(7)HexNAc(2): Hex(7) HexNAc(2).
Definition: cv.hpp:12525
MS_DB_MW_filter
MS_DB_MW_filter
DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range...
Definition: cv.hpp:3564
UNIMOD_2_monomethylsuccinyl
UNIMOD_2_monomethylsuccinyl
2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
Definition: cv.hpp:12012
MS_MPD
MS_MPD
MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption ...
Definition: cv.hpp:1887
UO_unit
UO_unit
unit: A unit of measurement is a standardized quantity of a physical quality.
Definition: cv.hpp:13803
UNIMOD_Pyro_carbamidomethyl
UNIMOD_Pyro_carbamidomethyl
Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
Definition: cv.hpp:9429
UNIMOD_IMEHex_2_NeuAc_1_
UNIMOD_IMEHex_2_NeuAc_1_
IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
Definition: cv.hpp:12078
MS_7800_Quadrupole_ICP_MS
MS_7800_Quadrupole_ICP_MS
7800 Quadrupole ICP-MS: The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma inst...
Definition: cv.hpp:8832
MS_scan_mode_OBSOLETE
MS_scan_mode_OBSOLETE
scan mode: OBSOLETE.
Definition: cv.hpp:372
MS_sample_name
MS_sample_name
sample name: A reference string relevant to the sample under study.
Definition: cv.hpp:267
MS_protein_modifications
MS_protein_modifications
protein modifications: Encoding of modifications of the protein sequence from the specified accession...
Definition: cv.hpp:3507
UNIMOD_Trp__Hydroxykynurenin
UNIMOD_Trp__Hydroxykynurenin
Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
Definition: cv.hpp:9999
MS_Xevo_G2_Tof
MS_Xevo_G2_Tof
Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
Definition: cv.hpp:5766
MS_phosphoRS_score
MS_phosphoRS_score
phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
Definition: cv.hpp:6330
MS_mass_resolving_power
MS_mass_resolving_power
mass resolving power: The observed mass divided by the difference between two masses that can be sepa...
Definition: cv.hpp:3087
MS_MassHunter_Data_Acquisition
MS_MassHunter_Data_Acquisition
MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
Definition: cv.hpp:2703
UO_parts_per_quadrillion
UO_parts_per_quadrillion
parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given sub...
Definition: cv.hpp:14313
UNIMOD_Xlink_DSSO_104_
UNIMOD_Xlink_DSSO_104_
Xlink:DSSO[104]: Sulfenic acid fragment of DSSO crosslinker.
Definition: cv.hpp:13524
UNIMOD_Delta_O_4_
UNIMOD_Delta_O_4_
Delta:O(4): Tryptophan oxidation to dihydroxy-N-formaylkynurenine.
Definition: cv.hpp:13617
MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE
MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE
mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrome...
Definition: cv.hpp:1299
MS_IsoProbe_T
MS_IsoProbe_T
IsoProbe T: Waters IsoProbe T MS.
Definition: cv.hpp:864
MS_base_peak_m_z
MS_base_peak_m_z
base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
Definition: cv.hpp:2118
UNIMOD_Label_2H_4__GG
UNIMOD_Label_2H_4__GG
Label:2H(4)+GG: Ubiquitination 2H4 lysine.
Definition: cv.hpp:11010
MS_regular_expressions_for_a_GUID
MS_regular_expressions_for_a_GUID
).
Definition: cv.hpp:7140
MS_BP
MS_BP
BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied...
Definition: cv.hpp:1011
UNIMOD_Delta_H__4_O_2_
UNIMOD_Delta_H__4_O_2_
Delta:H(-4)O(2): Tryptophan oxidation to beta-unsaturated-2,4-bis-tryptophandione.
Definition: cv.hpp:13611
UNIMOD_dHex_3_Hex_2_HexNAc_4_
UNIMOD_dHex_3_Hex_2_HexNAc_4_
dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
Definition: cv.hpp:13236
MS_Q1_spectrum
MS_Q1_spectrum
Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2355
UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_
HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12825
MS_MRMaid_peptide_score
MS_MRMaid_peptide_score
MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
Definition: cv.hpp:7110
UNIMOD_Delta_H_4_C_6_
UNIMOD_Delta_H_4_C_6_
Delta:H(4)C(6): Acrolein addition +76.
Definition: cv.hpp:9777
MS_chemical_ionization
MS_chemical_ionization
chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion....
Definition: cv.hpp:495
MS_isobaric_label_quantitation_analysis
MS_isobaric_label_quantitation_analysis
isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
Definition: cv.hpp:6468
MS_molecules_per_cell
MS_molecules_per_cell
molecules per cell: The absolute abundance of protein in a cell.
Definition: cv.hpp:7989
UO_microampere
UO_microampere
microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6]...
Definition: cv.hpp:13917
UNIMOD_Hex_2_HexNAc_1_NeuGc_4_
UNIMOD_Hex_2_HexNAc_1_NeuGc_4_
Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
Definition: cv.hpp:13275
UNIMOD_Octanoyl
UNIMOD_Octanoyl
Octanoyl: Octanoyl.
Definition: cv.hpp:10188
UNIMOD_Met__Ala
UNIMOD_Met__Ala
Met->Ala: Met->Ala substitution.
Definition: cv.hpp:11679
MS_V8_E
MS_V8_E
V8-E: Cleavage agent V8-E.
Definition: cv.hpp:4356
MS_M_LDI_LR
MS_M_LDI_LR
M@LDI LR: Waters oa-ToF based MALDI LR.
Definition: cv.hpp:879
UNIMOD_ISD_z_2_ion
UNIMOD_ISD_z_2_ion
ISD_z+2_ion: ISD (z+2)-series.
Definition: cv.hpp:11262
MS_TDC
MS_TDC
TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital repr...
Definition: cv.hpp:696
UNIMOD_Propionamide_2H_3_
UNIMOD_Propionamide_2H_3_
Propionamide:2H(3): Acrylamide d3.
Definition: cv.hpp:9561
MS_DiLeu_reagent_115
MS_DiLeu_reagent_115
DiLeu reagent 115: The name of the sample labelled with the DiLeu reagent 115.
Definition: cv.hpp:8757
MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time
MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time
two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatograp...
Definition: cv.hpp:6711
MS_precursor_activation
MS_precursor_activation
precursor activation: Terms to describe the precursor activation.
Definition: cv.hpp:1959
MS_Mascot_MaxProteinHits
MS_Mascot_MaxProteinHits
Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto',...
Definition: cv.hpp:4362
MS_peptide_sequence_level_e_value
MS_peptide_sequence_level_e_value
peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identi...
Definition: cv.hpp:6030
MS_Mascot_query_number
MS_Mascot_query_number
Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
Definition: cv.hpp:4989
MS_decoy_DB_from_IPI_zebrafish_OBSOLETE
MS_decoy_DB_from_IPI_zebrafish_OBSOLETE
decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rer...
Definition: cv.hpp:4290
UO_nanosecond
UO_nanosecond
nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
Definition: cv.hpp:14247
UNIMOD_Tyr__Trp
UNIMOD_Tyr__Trp
Tyr->Trp: Tyr->Trp substitution.
Definition: cv.hpp:11994
UNIMOD_dHex_2_Hex_5_HexNAc_2_Me_1_
UNIMOD_dHex_2_Hex_5_HexNAc_2_Me_1_
dHex(2)Hex(5)HexNAc(2)Me(1): Me dHex(2) Hex(5) HexNAc(2).
Definition: cv.hpp:13707
UO_milliunits_per_milliliter
UO_milliunits_per_milliliter
milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of a...
Definition: cv.hpp:14634
MS_label_free_raw_feature_quantitation
MS_label_free_raw_feature_quantitation
label-free raw feature quantitation: Label-free raw feature quantitation.
Definition: cv.hpp:6501
MS_SCIEX_TOF_TOF_T2D_format
MS_SCIEX_TOF_TOF_T2D_format
SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export fo...
Definition: cv.hpp:5079
MS_ProteinScape_PFFSolverExp
MS_ProteinScape_PFFSolverExp
ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
Definition: cv.hpp:4914
MS_metastable_ion_OBSOLETE
MS_metastable_ion_OBSOLETE
metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation...
Definition: cv.hpp:1677
UNIMOD_Hex_3_HexNAc_3_Sulf_1_
UNIMOD_Hex_3_HexNAc_3_Sulf_1_
Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
Definition: cv.hpp:13026
UO_fluid_ounce
UO_fluid_ounce
fluid ounce: An imperial volume unit which is equivalent to 28.413,0625 millilitres.
Definition: cv.hpp:14871
MS_decoy_DB_generation_algorithm
MS_decoy_DB_generation_algorithm
decoy DB generation algorithm: Name of algorithm used for decoy generation.
Definition: cv.hpp:4752
MS_exact_mass_OBSOLETE
MS_exact_mass_OBSOLETE
exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
Definition: cv.hpp:1029
UNIMOD_NIPCAM
UNIMOD_NIPCAM
NIPCAM: N-isopropylcarboxamidomethyl.
Definition: cv.hpp:9411
UNIMOD_O_Dimethylphosphate
UNIMOD_O_Dimethylphosphate
O-Dimethylphosphate: O-Dimethylphosphorylation.
Definition: cv.hpp:10836
UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_
UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_
dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:12756
MS_DiLeu_reagent_116
MS_DiLeu_reagent_116
DiLeu reagent 116: The name of the sample labelled with the DiLeu reagent 116.
Definition: cv.hpp:8760
MS_Morpheus_summed_Morpheus_score
MS_Morpheus_summed_Morpheus_score
Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
Definition: cv.hpp:8448
MS_wavelength_array
MS_wavelength_array
wavelength array: A data array of electromagnetic radiation wavelength values.
Definition: cv.hpp:2514
UNIMOD_ICPL_2H_4_
UNIMOD_ICPL_2H_4_
ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
Definition: cv.hpp:10815
MS_group_PSMs_by_sequence_with_modifications
MS_group_PSMs_by_sequence_with_modifications
group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifi...
Definition: cv.hpp:7941
MS_Anubis
MS_Anubis
Anubis: Anubis software for selected reaction monitoring data.
Definition: cv.hpp:7680
MS_leading_protein
MS_leading_protein
leading protein: At least one protein within each group should be annotated as a leading protein to i...
Definition: cv.hpp:7653
UNIMOD_Myristoyl
UNIMOD_Myristoyl
Myristoyl: Myristoylation.
Definition: cv.hpp:9477
UNIMOD_Label_13C_4_15N_2__GG
UNIMOD_Label_13C_4_15N_2__GG
Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
Definition: cv.hpp:11124
MS_ETD
MS_ETD
ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing f...
Definition: cv.hpp:2451
UNIMOD_Hex_4_HexNAc_3_NeuGc_1_
UNIMOD_Hex_4_HexNAc_3_NeuGc_1_
Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
Definition: cv.hpp:12534
MS_OMSSA
MS_OMSSA
OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
Definition: cv.hpp:4830
MS_spControl
MS_spControl
spControl: Bruker software for data acquisition.
Definition: cv.hpp:2880
UO_rood
UO_rood
rood: An area unit which is equivalent to 1 furlong x 1 rod. This is equal to an area of 1,...
Definition: cv.hpp:14865
UO_picosecond
UO_picosecond
picosecond: A time unit which is equal to 10^[-12] s.
Definition: cv.hpp:13893
UNIMOD_Oxidation_NEM
UNIMOD_Oxidation_NEM
Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
Definition: cv.hpp:12282
UNIMOD_Ala__Gln
UNIMOD_Ala__Gln
Ala->Gln: Ala->Gln substitution.
Definition: cv.hpp:11409
UNIMOD_dHex_1_Hex_4_HexNAc_2_
UNIMOD_dHex_1_Hex_4_HexNAc_2_
dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
Definition: cv.hpp:13341
UNIMOD_MeMePhosphorothioate
UNIMOD_MeMePhosphorothioate
MeMePhosphorothioate: S-Methyl Methyl phosphorothioate.
Definition: cv.hpp:13488
UNIMOD_TMAB_2H_9_
UNIMOD_TMAB_2H_9_
TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:10278
UNIMOD_Asp__Arg
UNIMOD_Asp__Arg
Asp->Arg: Asp->Arg substitution.
Definition: cv.hpp:11478
MS_Element_2
MS_Element_2
Element 2: Thermo Scientific Element 2 HR-ICP-MS.
Definition: cv.hpp:2610
MS_activation
MS_activation
activation (precursor activation): Terms to describe the precursor activation.
Definition: cv.hpp:1962
UNIMOD_Ethanolyl
UNIMOD_Ethanolyl
Ethanolyl: Ethanolation.
Definition: cv.hpp:9852
UO_angle_unit
UO_angle_unit
angle unit: A unit which is a standard measure of the figure or space formed by the junction of two l...
Definition: cv.hpp:14166
UNIMOD_Pro__Met
UNIMOD_Pro__Met
Pro->Met: Pro->Met substitution.
Definition: cv.hpp:11769
UNIMOD_Unknown_177
UNIMOD_Unknown_177
Unknown:177: Unidentified modification of 176.7462 found in open search.
Definition: cv.hpp:13755
MS_peptide_D_Score
MS_peptide_D_Score
peptide:D-Score: D-Score for PTM site location at the peptide-level.
Definition: cv.hpp:8112
MS_Bioworks
MS_Bioworks
Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
Definition: cv.hpp:2205
UNIMOD_Biotin_Thermo_33033_H
UNIMOD_Biotin_Thermo_33033_H
Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
Definition: cv.hpp:12009
UNIMOD_4AcAllylGal
UNIMOD_4AcAllylGal
4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
Definition: cv.hpp:11085
MS_ion_selection_attribute
MS_ion_selection_attribute
ion selection attribute: Ion selection properties that are associated with a value.
Definition: cv.hpp:1956
UNIMOD_LG_pyrrole
UNIMOD_LG_pyrrole
LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
Definition: cv.hpp:11178
MS_Exactive_Plus
MS_Exactive_Plus
Exactive Plus: Thermo Scientific Exactive Plus MS.
Definition: cv.hpp:8028
UO_curie_per_liter
UO_curie_per_liter
curie per liter: A unit of radioactivity concentration which is equal to one curie in a volume of 1 l...
Definition: cv.hpp:14757
MS_Shimadzu_Scientific_Instruments_instrument_model
MS_Shimadzu_Scientific_Instruments_instrument_model
Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
Definition: cv.hpp:2469
MS_Paragon__quantitation
MS_Paragon__quantitation
Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is cond...
Definition: cv.hpp:7734
MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once
MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once
ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a Prot...
Definition: cv.hpp:8160
MS_API_300
MS_API_300
API 300: Applied Biosystems/MDS SCIEX API 300 MS.
Definition: cv.hpp:8217
MS_ProteinExtractor_MinNumberOfPeptides
MS_ProteinExtractor_MinNumberOfPeptides
ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
Definition: cv.hpp:4686
MS_ProLuCID_xcorr
MS_ProLuCID_xcorr
ProLuCID:xcorr: The ProLuCID result 'XCorr'.
Definition: cv.hpp:8055
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_
Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
Definition: cv.hpp:13101
UNIMOD_dHex_1_Hex_7_HexNAc_3_
UNIMOD_dHex_1_Hex_7_HexNAc_3_
dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
Definition: cv.hpp:12696
UNIMOD_AEBS
UNIMOD_AEBS
AEBS: Aminoethylbenzenesulfonylation.
Definition: cv.hpp:9849
MS_experimental_condition__healthy_
MS_experimental_condition__healthy_
experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
Definition: cv.hpp:5853
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein id...
Definition: cv.hpp:5613
MS_____W_
MS_____W_
(?<=W): Regular expression for 2-iodobenzoate.
Definition: cv.hpp:6303
MS_Comet_matched_ions
MS_Comet_matched_ions
Comet:matched ions: The Comet result 'Matched Ions'.
Definition: cv.hpp:7221
MS_Paragon__digestion
MS_Paragon__digestion
Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other s...
Definition: cv.hpp:7758
UNIMOD_Hex_3_HexNAc_2_NeuAc_1_
UNIMOD_Hex_3_HexNAc_2_NeuAc_1_
Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
Definition: cv.hpp:12450
MS_TMT_reagent_130
MS_TMT_reagent_130
TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
Definition: cv.hpp:8313
UNIMOD_Phycoerythrobilin
UNIMOD_Phycoerythrobilin
Phycoerythrobilin: Phycoerythrobilin.
Definition: cv.hpp:10086
UNIMOD_HPG
UNIMOD_HPG
HPG: Hydroxyphenylglyoxal arginine.
Definition: cv.hpp:9735
MS_protein_group_level_combined_FDRScore
MS_protein_group_level_combined_FDRScore
protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtain...
Definition: cv.hpp:7575
MS_Paragon_unused_protscore
MS_Paragon_unused_protscore
Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
Definition: cv.hpp:3951
MS_mass_defect_OBSOLETE
MS_mass_defect_OBSOLETE
mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
Definition: cv.hpp:1059
MS_Phenyx_Scoring_Model
MS_Phenyx_Scoring_Model
Phenyx:Scoring Model: The selected scoring model in Phenyx.
Definition: cv.hpp:4536
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss pea...
Definition: cv.hpp:5289
UNIMOD_Xlink_BS2G_113_
UNIMOD_Xlink_BS2G_113_
Xlink:BS2G[113]: Ammonium-quenched monolink of BS2-G crosslinker.
Definition: cv.hpp:13569
MS_scan_start_time
MS_scan_start_time
scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
Definition: cv.hpp:309
MS_TopPIC_shift_num
MS_TopPIC_shift_num
TopPIC:shift num: Maximum number of unexpected modifications in a proteoform spectrum match.
Definition: cv.hpp:9177
MS_DirecTag
MS_DirecTag
DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
Definition: cv.hpp:5160
MS_Mascot_ProteinScoringMethod
MS_Mascot_ProteinScoringMethod
Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
Definition: cv.hpp:4365
UNIMOD_dHex_2_Hex_4_HexNAc_3_
UNIMOD_dHex_2_Hex_4_HexNAc_3_
dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
Definition: cv.hpp:12528
MS_ProteinLynx_Ladder_Score
MS_ProteinLynx_Ladder_Score
ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
Definition: cv.hpp:5112
pwiz::cv::CV::empty
bool empty() const
returns ture iff id, URI, fullName, and version are all empty
UNIMOD_Leu__MetOx
UNIMOD_Leu__MetOx
Leu->MetOx: Leu->Met substitution and sulfoxidation.
Definition: cv.hpp:11097
UNIMOD_DyLight_maleimide
UNIMOD_DyLight_maleimide
DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
Definition: cv.hpp:11058
MS_PeptideShaker_protein_confidence_type
MS_PeptideShaker_protein_confidence_type
PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein i...
Definition: cv.hpp:8079
MS_MzWiff
MS_MzWiff
MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML fo...
Definition: cv.hpp:2424
UNIMOD_Xle__Met
UNIMOD_Xle__Met
Xle->Met: Leu/Ile->Met substitution.
Definition: cv.hpp:10581
MS_SRM_quantitation_analysis
MS_SRM_quantitation_analysis
SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fra...
Definition: cv.hpp:5928
MS_PEAKS_inChorusProteinScore
MS_PEAKS_inChorusProteinScore
PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
Definition: cv.hpp:7797
MS_apex_Q
MS_apex_Q
apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:792
UO_millicurie
UO_millicurie
millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-...
Definition: cv.hpp:14235
MS_MS1_label_based_raw_feature_quantitation
MS_MS1_label_based_raw_feature_quantitation
MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
Definition: cv.hpp:6435
UO_micromole_per_kilogram
UO_micromole_per_kilogram
micromole per kilogram: A specific concentration unit which is equal to 1 micromole of a given substa...
Definition: cv.hpp:14805
MS_FAIMS_CV
MS_FAIMS_CV
FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS t...
Definition: cv.hpp:5145
UNIMOD_Phe__Tyr
UNIMOD_Phe__Tyr
Phe->Tyr: Phe->Tyr substitution.
Definition: cv.hpp:10485
MS_software
MS_software
software: Software related to the recording or transformation of spectra.
Definition: cv.hpp:2199
UO_kilogram_per_meter
UO_kilogram_per_meter
kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided...
Definition: cv.hpp:14349
UNIMOD_Dimethylphosphothione
UNIMOD_Dimethylphosphothione
Dimethylphosphothione: O-dimethylphosphothione.
Definition: cv.hpp:13785
MS_TSQ_Endura
MS_TSQ_Endura
TSQ Endura: Thermo Scientific TSQ Endura MS.
Definition: cv.hpp:7707
UO_femtoliter
UO_femtoliter
femtoliter: A volume unit which is equal to 10^[-15] L.
Definition: cv.hpp:14115
UO_microliter_per_kilogram
UO_microliter_per_kilogram
microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogr...
Definition: cv.hpp:14394
UNIMOD_MG_H1
UNIMOD_MG_H1
MG-H1: Methylglyoxal-derived hydroimidazolone.
Definition: cv.hpp:11013
UNIMOD_dHex_2_Hex_3_HexNAc_4_
UNIMOD_dHex_2_Hex_3_HexNAc_4_
dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
Definition: cv.hpp:13365
MS_xi
MS_xi
xi: Search engine for cross-linked peptides.
Definition: cv.hpp:8085
UO_kilowatt_hour
UO_kilowatt_hour
kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
Definition: cv.hpp:14469
MS_focus_diameter_x
MS_focus_diameter_x
focus diameter x: Describes the diameter of the laser beam in x direction.
Definition: cv.hpp:3228
MS_PDA_spectrum_OBSOLETE
MS_PDA_spectrum_OBSOLETE
PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
Definition: cv.hpp:2523
MS_dynamic_mass_spectrometry_OBSOLETE
MS_dynamic_mass_spectrometry_OBSOLETE
dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fie...
Definition: cv.hpp:1479
MS_ion_optics
MS_ion_optics
ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise man...
Definition: cv.hpp:1980
MS_Scaffold_input_parameter
MS_Scaffold_input_parameter
Scaffold input parameter: Search engine input parameters specific to Scaffold.
Definition: cv.hpp:6765
MS_2500_QTRAP
MS_2500_QTRAP
2500 QTRAP: SCIEX 2500 QTRAP.
Definition: cv.hpp:8187
MS_energy_unit_OBSOLETE
MS_energy_unit_OBSOLETE
energy unit: Energy units are represented in either eV or Joules.
Definition: cv.hpp:414
MS_combined_FDRScore_for_proteins
MS_combined_FDRScore_for_proteins
combined FDRScore for proteins: MzidLibrary Combined FDRScore for proteins.
Definition: cv.hpp:7548
MS_number_of_product_ion_observations
MS_number_of_product_ion_observations
number of product ion observations: The number of times the specific product ion has been observed in...
Definition: cv.hpp:7128
MS_resonance_enhanced_multiphoton_ionization
MS_resonance_enhanced_multiphoton_ionization
resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross secti...
Definition: cv.hpp:1353
UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_
dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
Definition: cv.hpp:12693
UNIMOD_Hex_1_Pent_2_
UNIMOD_Hex_1_Pent_2_
Hex(1)Pent(2): Hex Pent(2).
Definition: cv.hpp:12369
MS_ProteinScape_Gel
MS_ProteinScape_Gel
ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
Definition: cv.hpp:4248
MS_MS_GF_SpecEValue
MS_MS_GF_SpecEValue
MS-GF:SpecEValue: MS-GF spectral E-value.
Definition: cv.hpp:6606
MS_Vs_cm_2
MS_Vs_cm_2
Vs/cm^2 (volt-second per square centimeter): An electrical mobility unit that equals the speed [cm/s]...
Definition: cv.hpp:8865
MS_product_ion_scan_OBSOLETE
MS_product_ion_scan_OBSOLETE
product ion scan: The specific scan function or process that records product ion spectrum.
Definition: cv.hpp:621
MS_Mascot_PreferredTaxonomy
MS_Mascot_PreferredTaxonomy
Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same s...
Definition: cv.hpp:5793
MS_API_4000
MS_API_4000
API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
Definition: cv.hpp:807
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
Definition: cv.hpp:5646
MS_Xcalibur
MS_Xcalibur
Xcalibur: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2202
MS_SEQUEST_PeptideRankSp
MS_SEQUEST_PeptideRankSp
SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide)....
Definition: cv.hpp:4077
UNIMOD_Xlink_DSSO_54_
UNIMOD_Xlink_DSSO_54_
Xlink:DSSO[54]: Alkene fragment of DSSO crosslinker.
Definition: cv.hpp:13518
UNIMOD_benzylguanidine
UNIMOD_benzylguanidine
benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favo...
Definition: cv.hpp:12201
UNIMOD_LG_anhydrolactam
UNIMOD_LG_anhydrolactam
LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
Definition: cv.hpp:11175
UNIMOD_Carbamyl
UNIMOD_Carbamyl
Carbamyl: Carbamylation.
Definition: cv.hpp:9384
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:13176
UNIMOD_Hex_1_HexA_1_HexNAc_1_
UNIMOD_Hex_1_HexA_1_HexNAc_1_
Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
Definition: cv.hpp:12402
MS_X_Tandem
MS_X_Tandem
X!Tandem: X!Tandem was used to analyze the spectra.
Definition: cv.hpp:4833
UNIMOD_Propyl
UNIMOD_Propyl
Propyl: Propyl.
Definition: cv.hpp:12129
UNIMOD_Phycocyanobilin
UNIMOD_Phycocyanobilin
Phycocyanobilin: Phycocyanobilin.
Definition: cv.hpp:10083
UNIMOD_Succinyl_2H_4_
UNIMOD_Succinyl_2H_4_
Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
Definition: cv.hpp:9534
MS_decoy_DB_from_EST_OBSOLETE
MS_decoy_DB_from_EST_OBSOLETE
decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
Definition: cv.hpp:4287
UNIMOD_Tyr__Arg
UNIMOD_Tyr__Arg
Tyr->Arg: Tyr->Arg substitution.
Definition: cv.hpp:11985
MS_peak_area_OBSOLETE
MS_peak_area_OBSOLETE
peak area: Area of MS1 peak (e.g. SILAC, 15N).
Definition: cv.hpp:5949
UNIMOD_Ub_VME
UNIMOD_Ub_VME
Ub-VME: Ubiquitin vinylmethylester.
Definition: cv.hpp:12027
MS_OmniFlex
MS_OmniFlex
OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
Definition: cv.hpp:915
UNIMOD_TMAB
UNIMOD_TMAB
TMAB: 4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:10275
MS_MSn_OBSOLETE
MS_MSn_OBSOLETE
MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by pr...
Definition: cv.hpp:1320
UNIMOD_Xlink_B10621
UNIMOD_Xlink_B10621
Xlink:B10621: Bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine.
Definition: cv.hpp:9948
MS_API_2000
MS_API_2000
API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
Definition: cv.hpp:801
MS_ProteomeDiscoverer_WinCyg_source_files
MS_ProteomeDiscoverer_WinCyg_source_files
ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
Definition: cv.hpp:5637
UNIMOD_His__Pro
UNIMOD_His__Pro
His->Pro: His->Pro substitution.
Definition: cv.hpp:10515
MS_isolation_window_lower_limit_OBSOLETE
MS_isolation_window_lower_limit_OBSOLETE
isolation window lower limit: The lowest m/z being isolated in an isolation window.
Definition: cv.hpp:3069
MS_Thermo_Fisher_Scientific_instrument_model
MS_Thermo_Fisher_Scientific_instrument_model
Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model....
Definition: cv.hpp:2049
MS_LC_MS_feature_intensity
MS_LC_MS_feature_intensity
LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
Definition: cv.hpp:5934
MS_SEQUEST_Sum
MS_SEQUEST_Sum
SEQUEST:Sum:
Definition: cv.hpp:4530
UNIMOD_BDMAPP
UNIMOD_BDMAPP
BDMAPP: Mass Defect Tag on lysine e-amino.
Definition: cv.hpp:10806
MS_MSn_spectrum
MS_MSn_spectrum
MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where ...
Definition: cv.hpp:2364
MS_quantile_normalization__proteins
MS_quantile_normalization__proteins
quantile normalization, proteins: Normalization of protein values to approach the same distribution.
Definition: cv.hpp:6003
MS_modified_peptide_sequence
MS_modified_peptide_sequence
modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compos...
Definition: cv.hpp:3369
MS_database_name
MS_database_name
database name: The name of the search database (nr, SwissProt or est_human).
Definition: cv.hpp:3537
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_
dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:12540
MS_median_baseline_reduction
MS_median_baseline_reduction
median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of ...
Definition: cv.hpp:6417
MS_FT_ICR
MS_FT_ICR
FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on th...
Definition: cv.hpp:537
MS_domain_range
MS_domain_range
domain range: Domain range of a numerical value.
Definition: cv.hpp:7362
UNIMOD_PropylNAGthiazoline
UNIMOD_PropylNAGthiazoline
PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
Definition: cv.hpp:10335
UO_mole
UO_mole
mole: A substance unit which is equal to the amount of substance of a molecular system which contains...
Definition: cv.hpp:13842
MS_ProteomeDiscoverer_SN_Threshold
MS_ProteomeDiscoverer_SN_Threshold
ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
Definition: cv.hpp:5253
UO_nanomole
UO_nanomole
nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
Definition: cv.hpp:13926
UO_confluence_percentage
UO_confluence_percentage
confluence percentage: A dimensionless percent unit which denotes the density of an attached or monol...
Definition: cv.hpp:14379
MS_ProteinLynx_Log_Likelihood
MS_ProteinLynx_Log_Likelihood
ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
Definition: cv.hpp:5109
MS_SCION_TQ
MS_SCION_TQ
SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
Definition: cv.hpp:7338
MS_MzStar
MS_MzStar
MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format....
Definition: cv.hpp:2235
UNIMOD_DMPO
UNIMOD_DMPO
DMPO: DMPO spin-trap nitrone adduct.
Definition: cv.hpp:11322
UO_momentum_unit
UO_momentum_unit
momentum unit: A unit which is a standard measure of the quantity of motion measured by the product o...
Definition: cv.hpp:13974
MS_Discrete_Mass_Spectrum
MS_Discrete_Mass_Spectrum
Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contai...
Definition: cv.hpp:723
UO_disintegrations_per_second
UO_disintegrations_per_second
disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:14445
UNIMOD_Arg__Ser
UNIMOD_Arg__Ser
Arg->Ser: Arg->Ser substitution.
Definition: cv.hpp:10662
MS_sample_mass
MS_sample_mass
sample mass: Total mass of sample used.
Definition: cv.hpp:273
UNIMOD_Ser__Gly
UNIMOD_Ser__Gly
Ser->Gly: Ser->Gly substitution.
Definition: cv.hpp:10725
UNIMOD_Cyano
UNIMOD_Cyano
Cyano: Cyano.
Definition: cv.hpp:10218
pwiz::cv::CV::id
std::string id
the short label to be used as a reference tag with which to refer to this particular Controlled Vocab...
Definition: cv.hpp:14918
MS_param__a_ion
MS_param__a_ion
param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
Definition: cv.hpp:3783
UNIMOD_Thiophos_S_S_biotin
UNIMOD_Thiophos_S_S_biotin
Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
Definition: cv.hpp:9966
MS_Element_GD
MS_Element_GD
Element GD: Thermo Scientific Element GD Glow Discharge MS.
Definition: cv.hpp:2613
UNIMOD_Tyr__Cys
UNIMOD_Tyr__Cys
Tyr->Cys: Tyr->Cys substitution.
Definition: cv.hpp:10803
MS_TMT_reagent_127N
MS_TMT_reagent_127N
TMT reagent 127N: The name of the sample labelled with the TMT reagent 127N.
Definition: cv.hpp:8709
MS_peptide_modification_details
MS_peptide_modification_details
peptide modification details: The children of this term can be used to describe modifications.
Definition: cv.hpp:4809
UNIMOD_s_GlcNAc
UNIMOD_s_GlcNAc
s-GlcNAc: O3S1HexNAc1.
Definition: cv.hpp:12339
MS_Progenesis_normalization
MS_Progenesis_normalization
Progenesis normalization: Normalization as performed by Progenesis LC-MS.
Definition: cv.hpp:6015
UNIMOD_Hex_7_Phos_3_
UNIMOD_Hex_7_Phos_3_
Hex(7)Phos(3): Hex(7) Phos(3).
Definition: cv.hpp:13128
UNIMOD_dHex_2_Hex_1_HexNAc_4_Sulf_1_
UNIMOD_dHex_2_Hex_1_HexNAc_4_Sulf_1_
dHex(2)Hex(1)HexNAc(4)Sulf(1): DHex(2) Hex HexNAc(4) Sulf.
Definition: cv.hpp:13695
MS_PEAKS_Studio
MS_PEAKS_Studio
PEAKS Studio: PEAKS Studio software for data analysis.
Definition: cv.hpp:6261
UNIMOD_mTRAQ_13C_6_15N_2_
UNIMOD_mTRAQ_13C_6_15N_2_
mTRAQ:13C(6)15N(2): MTRAQ heavy.
Definition: cv.hpp:12120
UNIMOD_Biotin_Thermo_33033
UNIMOD_Biotin_Thermo_33033
Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
Definition: cv.hpp:12006
MS_CRM_OBSOLETE
MS_CRM_OBSOLETE
CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and...
Definition: cv.hpp:1161
MS_no_nativeID_format
MS_no_nativeID_format
no nativeID format: No nativeID format indicates that the file tagged with this term does not contain...
Definition: cv.hpp:3171
MS_increasing_m_z_scan
MS_increasing_m_z_scan
increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
Definition: cv.hpp:594
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from differen...
Definition: cv.hpp:5304
UNIMOD_dHex_1_Hex_4_HexNAc_5_
UNIMOD_dHex_1_Hex_4_HexNAc_5_
dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
Definition: cv.hpp:12642
PEFF_TaxName
PEFF_TaxName
TaxName: Taxonomy name (latin or common name).
Definition: cv.hpp:186
MS_6460_Triple_Quadrupole_LC_MS
MS_6460_Triple_Quadrupole_LC_MS
6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7785
MS_ProteinExtractor_UseSequest
MS_ProteinExtractor_UseSequest
ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the Protei...
Definition: cv.hpp:4704
MS_param__v_ion
MS_param__v_ion
param: v ion: Parameter information, type of product: side chain loss v ion.
Definition: cv.hpp:4197
MS_local_FDR
MS_local_FDR
local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
Definition: cv.hpp:4176
MS_TIC
MS_TIC
TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/...
Definition: cv.hpp:1410
UO_exa
UO_exa
exa: A prefix in the metric system denoting a factor of ten to the power of 18.
Definition: cv.hpp:14664
UNIMOD_DimethylpyrroleAdduct
UNIMOD_DimethylpyrroleAdduct
DimethylpyrroleAdduct: 2,5-dimethypyrrole.
Definition: cv.hpp:9936
MS_Bruker_BAF_format
MS_Bruker_BAF_format
Bruker BAF format: Bruker BAF raw file format.
Definition: cv.hpp:3144
MS_SEQUEST_SequencePartialFilter
MS_SEQUEST_SequencePartialFilter
SEQUEST:SequencePartialFilter:
Definition: cv.hpp:3594
UNIMOD_DEDGFLYMVYASQETFG
UNIMOD_DEDGFLYMVYASQETFG
DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
Definition: cv.hpp:11310
MS_PEAKS_Online
MS_PEAKS_Online
PEAKS Online: PEAKS Online software for high throughput data analysis.
Definition: cv.hpp:6264
UNIMOD_DiART6plex
UNIMOD_DiART6plex
DiART6plex: Representative mass and accurate mass for 114.
Definition: cv.hpp:12288
MS_linked_scan_OBSOLETE
MS_linked_scan_OBSOLETE
linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer ...
Definition: cv.hpp:1557
UNIMOD_trifluoro
UNIMOD_trifluoro
trifluoro: Trifluoroleucine replacement of leucine.
Definition: cv.hpp:10905
MS_chromatogram
MS_chromatogram
chromatogram: The representation of detector response versus time.
Definition: cv.hpp:2544
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched ...
Definition: cv.hpp:5436
MS_32_bit_float
MS_32_bit_float
32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2169
MS_spectral_count_feature
MS_spectral_count_feature
spectral count feature: Dummy decribing a spectral count feature.
Definition: cv.hpp:6810
MS_MS_GF
MS_MS_GF
MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
Definition: cv.hpp:6588
MS_param__z_ion
MS_param__z_ion
param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
Definition: cv.hpp:4215
UNIMOD_Asn__Tyr
UNIMOD_Asn__Tyr
Asn->Tyr: Asn->Tyr substitution.
Definition: cv.hpp:10611
MS_6150_Quadrupole_LC_MS
MS_6150_Quadrupole_LC_MS
6150 Quadrupole LC/MS: The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:8805
MS_quality_estimation_method_details
MS_quality_estimation_method_details
quality estimation method details: Method for quality estimation (manually or with decoy database).
Definition: cv.hpp:3663
UNIMOD_Ethanolamine
UNIMOD_Ethanolamine
Ethanolamine: Carboxyl modification with ethanolamine.
Definition: cv.hpp:10863
MS_target_SRM_transition
MS_target_SRM_transition
target SRM transition: A transition used to target a specific compound that may be in the sample.
Definition: cv.hpp:6456
MS_ProCon
MS_ProCon
ProCon: Java software designed to convert one of several proteomics identification results formats in...
Definition: cv.hpp:7452
MS_n_terminal_flanking_residue
MS_n_terminal_flanking_residue
n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it...
Definition: cv.hpp:3795
PEFF_ModResUnimod
PEFF_ModResUnimod
ModResUnimod: Modified residue with Unimod identifier.
Definition: cv.hpp:255
MS_Tide
MS_Tide
Tide: Tide open-source sequence search program developed at the University of Washington.
Definition: cv.hpp:8178
UNIMOD_Phe__Trp
UNIMOD_Phe__Trp
Phe->Trp: Phe->Trp substitution.
Definition: cv.hpp:11562
MS_product_ion_detection_probability
MS_product_ion_detection_probability
product ion detection probability: Probability of detecting product ion when precursor ion is present...
Definition: cv.hpp:7119
MS_retention_time_normalization_standard
MS_retention_time_normalization_standard
retention time normalization standard: A standard providing the retention times at which a set of ref...
Definition: cv.hpp:3408
UO_microcurie
UO_microcurie
microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6...
Definition: cv.hpp:14238
MS_Voyager_Biospectrometry_Workstation_System
MS_Voyager_Biospectrometry_Workstation_System
Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysi...
Definition: cv.hpp:2226
MS_spin_coating_MALDI_sample_preparation
MS_spin_coating_MALDI_sample_preparation
spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
Definition: cv.hpp:6405
MS_error_on_peptide_ratio
MS_error_on_peptide_ratio
error on peptide ratio: Error on peptide ratio.
Definition: cv.hpp:3858
MS_percent_collision_energy_ramp_start
MS_percent_collision_energy_ramp_start
percent collision energy ramp start: Collision energy at the start of the collision energy ramp in pe...
Definition: cv.hpp:7101
MS_PQD
MS_PQD
PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q,...
Definition: cv.hpp:2457
UNIMOD_Cation_Fe_III_
UNIMOD_Cation_Fe_III_
Cation:Fe[III]: Replacement of 3 protons by iron.
Definition: cv.hpp:13491
UNIMOD_Tyr__Gln
UNIMOD_Tyr__Gln
Tyr->Gln: Tyr->Gln substitution.
Definition: cv.hpp:11982
MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE
MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modif...
Definition: cv.hpp:7443
MS_GC_Quantum
MS_GC_Quantum
GC Quantum: GC Quantum.
Definition: cv.hpp:2283
UNIMOD_dHex_1_Hex_3_HexNAc_3_
UNIMOD_dHex_1_Hex_3_HexNAc_3_
dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
Definition: cv.hpp:13347
MS_Thermo_Finnigan_software
MS_Thermo_Finnigan_software
Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2748
MS_Skyline
MS_Skyline
Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of...
Definition: cv.hpp:3474
MS_peak_intensity_rank
MS_peak_intensity_rank
peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum....
Definition: cv.hpp:3423
MS_PTM_scoring_algorithm_version
MS_PTM_scoring_algorithm_version
PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
Definition: cv.hpp:6339
UO_nanomolal
UO_nanomolal
nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
Definition: cv.hpp:14016
MS_peptide_consensus_attribute
MS_peptide_consensus_attribute
peptide consensus attribute: Attribute describing a peptide consensus.
Definition: cv.hpp:6795
MS_FlexAnalysis
MS_FlexAnalysis
FlexAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2211
MS_NBRF_PIR
MS_NBRF_PIR
NBRF PIR: The NBRF PIR was used as format.
Definition: cv.hpp:4467
UNIMOD_Thr__Xle
UNIMOD_Thr__Xle
Thr->Xle: Thr->Leu/Ile substitution.
Definition: cv.hpp:10746
UO_fathom
UO_fathom
fathom: A maritime length unit which is equal to 6.08 feet, or 1.853184 metres
Definition: cv.hpp:14853
UO_amount_per_container
UO_amount_per_container
amount per container: A concentration unit which is a standard measure of the amount of a substance i...
Definition: cv.hpp:14625
MS_mean
MS_mean
mean: The arithmetic mean.
Definition: cv.hpp:9309
MS_dalton_OBSOLETE
MS_dalton_OBSOLETE
dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1....
Definition: cv.hpp:1017
UO_molecule_count
UO_molecule_count
molecule count: A dimensionless count unit which denotes the number of molecules.
Definition: cv.hpp:14373
UNIMOD_EGCG2
UNIMOD_EGCG2
EGCG2: (-)-dehydroepigallocatechin.
Definition: cv.hpp:11289
MS_PinPoint
MS_PinPoint
PinPoint: Thermo Scientific PinPoint SRM analysis software.
Definition: cv.hpp:6150
PEFF_PName
PEFF_PName
PName: Protein Name, description.
Definition: cv.hpp:180
MS_co_author
MS_co_author
co-author: One of a set of authors associated with a publication or release.
Definition: cv.hpp:6552
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_
dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
Definition: cv.hpp:12963
UNIMOD_HexNAc_2_
UNIMOD_HexNAc_2_
HexNAc(2): HexNAc2.
Definition: cv.hpp:9654
UNIMOD_HexNAc_3_
UNIMOD_HexNAc_3_
HexNAc(3): HexNAc(3).
Definition: cv.hpp:12384
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
Definition: cv.hpp:5376
MS_simple_ratio_of_two_values
MS_simple_ratio_of_two_values
simple ratio of two values: Simple ratio of two values (enumerator and denominator).
Definition: cv.hpp:5958
UNIMOD_Cation_Zn_II_
UNIMOD_Cation_Zn_II_
Cation:Zn[II]: Replacement of 2 protons by zinc.
Definition: cv.hpp:11199
UNIMOD_PhosphoHex
UNIMOD_PhosphoHex
PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
Definition: cv.hpp:10194
MS_emission_spectrum
MS_emission_spectrum
emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or ...
Definition: cv.hpp:3111
MS_TOPP_FeatureLinkerLabeled
MS_TOPP_FeatureLinkerLabeled
TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
Definition: cv.hpp:6972
MS_selected_ion_flow_tube
MS_selected_ion_flow_tube
selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and...
Definition: cv.hpp:1383
UO_kilodalton
UO_kilodalton
kilodalton: A mass unit which is equal to one thousand daltons.
Definition: cv.hpp:14463
UNIMOD_Gly__Asp
UNIMOD_Gly__Asp
Gly->Asp: Gly->Asp substitution.
Definition: cv.hpp:10506
MS_Hitachi_instrument_model
MS_Hitachi_instrument_model
Hitachi instrument model: Hitachi instrument model.
Definition: cv.hpp:2064
UNIMOD_Val__Phe
UNIMOD_Val__Phe
Val->Phe: Val->Phe substitution.
Definition: cv.hpp:10752
MS_OpenXQuest_intsum
MS_OpenXQuest_intsum
OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.
Definition: cv.hpp:8514
MS_Scaffold
MS_Scaffold
Scaffold: Scaffold analysis software.
Definition: cv.hpp:5082
UO_volume_unit
UO_volume_unit
volume unit: A unit which is a standard measure of the amount of space occupied by any substance,...
Definition: cv.hpp:14088
UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_
UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_
dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:12519
MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score
MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score
ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do ...
Definition: cv.hpp:7587
MS_Result_file_URI
MS_Result_file_URI
Result file URI: URI of one file labeled as 'Result', associated to one PX submission.
Definition: cv.hpp:8967
MS_instrument
MS_instrument
instrument: Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1983
UNIMOD_Ala__Arg
UNIMOD_Ala__Arg
Ala->Arg: Ala->Arg substitution.
Definition: cv.hpp:11412
UNIMOD_Tripalmitate
UNIMOD_Tripalmitate
Tripalmitate: N-acyl diglyceride cysteine.
Definition: cv.hpp:9495
MS_nanoelectrospray
MS_nanoelectrospray
nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is sy...
Definition: cv.hpp:1764
MS_pwiz
MS_pwiz
pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis....
Definition: cv.hpp:2508
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically ...
Definition: cv.hpp:5514
MS_FAB
MS_FAB
FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused...
Definition: cv.hpp:516
MS_PSM_level_result_list_statistic
MS_PSM_level_result_list_statistic
PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
Definition: cv.hpp:8559
MS_absolute_quantity
MS_absolute_quantity
absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample...
Definition: cv.hpp:3870
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
Definition: cv.hpp:1395
UNIMOD_Thr__Phe
UNIMOD_Thr__Phe
Thr->Phe: Thr->Phe substitution.
Definition: cv.hpp:11871
MS_time_delayed_fragmentation_spectrum
MS_time_delayed_fragmentation_spectrum
time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a tim...
Definition: cv.hpp:3057
MS_OMSSA_pvalue
MS_OMSSA_pvalue
OMSSA:pvalue: OMSSA p-value.
Definition: cv.hpp:4395
MS_SpectrumMill_Score
MS_SpectrumMill_Score
SpectrumMill:Score: Spectrum mill peptide score.
Definition: cv.hpp:5115
UO_millimolar
UO_millimolar
millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
Definition: cv.hpp:13992
MS_Trypsin_R
MS_Trypsin_R
Trypsin/R (Arg-C): Endoproteinase Arg-C.
Definition: cv.hpp:4314
UO_decibel
UO_decibel
decibel: A ratio unit which is an indicator of sound power per unit area.
Definition: cv.hpp:14574
MS_PAnalyzer
MS_PAnalyzer
PAnalyzer: PAnalyzer software for getting protein evidence categories.
Definition: cv.hpp:6678
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
Definition: cv.hpp:5277
MS_dataset_submitter
MS_dataset_submitter
dataset submitter: A person who submits a dataset to a repository.
Definition: cv.hpp:6555
UNIMOD_Trp__Arg
UNIMOD_Trp__Arg
Trp->Arg: Trp->Arg substitution.
Definition: cv.hpp:10779
MS_decoy_DB_from_IPI_chicken_OBSOLETE
MS_decoy_DB_from_IPI_chicken_OBSOLETE
decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gall...
Definition: cv.hpp:4296
UNIMOD_2_succinyl
UNIMOD_2_succinyl
2-succinyl: S-(2-succinyl) cysteine.
Definition: cv.hpp:11208
MS_protein_group_level_identification_statistic
MS_protein_group_level_identification_statistic
protein group-level identification statistic: Identification confidence metric for a protein group.
Definition: cv.hpp:7494
UNIMOD_Tyr__Asn
UNIMOD_Tyr__Asn
Tyr->Asn: Tyr->Asn substitution.
Definition: cv.hpp:10794
MS_ProteinProspector
MS_ProteinProspector
ProteinProspector: ProteinProspector software for data acquisition and analysis.
Definition: cv.hpp:6576
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12630
MS_Ascore_software
MS_Ascore_software
Ascore software: Ascore software.
Definition: cv.hpp:6381
UO_quart
UO_quart
quart: An imperial volume unit which is equivalent to 1,136.5225 millilitres, or two pints.
Definition: cv.hpp:14880
MS_PSM_FDR_threshold
MS_PSM_FDR_threshold
PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
Definition: cv.hpp:7227
pwiz::cv::CVTermInfo::parentsIsA
id_list parentsIsA
Definition: cv.hpp:14952
UNIMOD_OxLysBiotinRed
UNIMOD_OxLysBiotinRed
OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:9576
MS_MaRiMba_OBSOLETE
MS_MaRiMba_OBSOLETE
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3480
UNIMOD_Hex_1_HexA_1_
UNIMOD_Hex_1_HexA_1_
Hex(1)HexA(1): Hex HexA.
Definition: cv.hpp:12366
MS_OpenMS_file_format
MS_OpenMS_file_format
OpenMS file format: File format developed by the OpenMS team.
Definition: cv.hpp:8889
UNIMOD_Hex_1_HexNAc_1_Phos_1_
UNIMOD_Hex_1_HexNAc_1_Phos_1_
Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
Definition: cv.hpp:12372
MS_MSDK
MS_MSDK
MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass...
Definition: cv.hpp:8391
MS_MapNormalizer
MS_MapNormalizer
MapNormalizer: Normalizes peak intensities in an MS run.
Definition: cv.hpp:2952
MS_unmapped_protein
MS_unmapped_protein
unmapped protein: Within the context of a proteogenomics approach, a protein sequence that has not be...
Definition: cv.hpp:8643
MS_protein_value__sum_of_peptide_values
MS_protein_value__sum_of_peptide_values
protein value: sum of peptide values: Protein quantification value calculated as sum of peptide value...
Definition: cv.hpp:5967
MS_t_test_p_value
MS_t_test_p_value
t-test p-value: P-value of t-Test of two groups.
Definition: cv.hpp:5979
MS_ProteinScape_PFFSolverScore
MS_ProteinScape_PFFSolverScore
ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
Definition: cv.hpp:4917
MS_PTM_localization_single_result_statistic
MS_PTM_localization_single_result_statistic
PTM localization single result statistic: Statistic for a single item derived from a post-translation...
Definition: cv.hpp:8526
UNIMOD_Hex_1_HexNAc_2_dHex_2_Sulf_1_
UNIMOD_Hex_1_HexNAc_2_dHex_2_Sulf_1_
Hex(1)HexNAc(2)dHex(2)Sulf(1): Hex HexNAc(2) dHex(2) Sulf.
Definition: cv.hpp:13665
MS_API_365
MS_API_365
API 365: Applied Biosystems/MDS SCIEX API 365 MS.
Definition: cv.hpp:8223
MS_BIRD
MS_BIRD
BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation...
Definition: cv.hpp:1149
MS_QTRAP_6500_
MS_QTRAP_6500_
QTRAP 6500+: SCIEX QTRAP 6500+.
Definition: cv.hpp:8199
MS_AXIMA_CFR_MALDI_TOF
MS_AXIMA_CFR_MALDI_TOF
AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
Definition: cv.hpp:2481
UNIMOD_Cys__Pro
UNIMOD_Cys__Pro
Cys->Pro: Cys->Pro substitution.
Definition: cv.hpp:11445
MS_TOPP_feature_linker
MS_TOPP_feature_linker
TOPP feature linker: Feature linker component of the TOPP software.
Definition: cv.hpp:6969
UNIMOD_SulfanilicAcid_13C_6_
UNIMOD_SulfanilicAcid_13C_6_
SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
Definition: cv.hpp:9867
UNIMOD_Delta_H_8_C_6_O_1_
UNIMOD_Delta_H_8_C_6_O_1_
Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
Definition: cv.hpp:12141
MS_group_representative
MS_group_representative
group representative: An arbitrary and optional flag applied to exactly one protein per group to indi...
Definition: cv.hpp:7659
MS_MS1_label_based_peptide_level_quantitation
MS_MS1_label_based_peptide_level_quantitation
MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
Definition: cv.hpp:6438
UO_parts_per_million
UO_parts_per_million
parts per million: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:14304
MS_Maltcms
MS_Maltcms
Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework...
Definition: cv.hpp:7482
MS_time_series__time_point_X
MS_time_series__time_point_X
time series, time point X: The experimental design followed a time series design. The time point of t...
Definition: cv.hpp:5859
UNIMOD_Microcin
UNIMOD_Microcin
Microcin: Microcin E492 siderophore ester from serine.
Definition: cv.hpp:10242
MS_search_input_details
MS_search_input_details
search input details: Details describing the search input.
Definition: cv.hpp:4173
MS_Bruker_Daltonics_SCION_series
MS_Bruker_Daltonics_SCION_series
Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
Definition: cv.hpp:7329
UNIMOD_Lys__Phe
UNIMOD_Lys__Phe
Lys->Phe: Lys->Phe substitution.
Definition: cv.hpp:11655
MS_anti_aromatic_ion_OBSOLETE
MS_anti_aromatic_ion_OBSOLETE
anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
Definition: cv.hpp:1641
MS_SQID_protein_score
MS_SQID_protein_score
SQID:protein score: The SQID result 'protein score'.
Definition: cv.hpp:6081
MS_param__b_ion
MS_param__b_ion
param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
Definition: cv.hpp:3813
MS_gene_name
MS_gene_name
gene name: Name of the gene from which the protein is translated.
Definition: cv.hpp:3510
MS_AXIMA_Assurance_Linear_MALDI_TOF
MS_AXIMA_Assurance_Linear_MALDI_TOF
AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
Definition: cv.hpp:2496
MS_sample_state
MS_sample_state
sample state: The chemical phase of a pure sample, or the state of a mixed sample.
Definition: cv.hpp:270
MS_mass_scan_OBSOLETE
MS_mass_scan_OBSOLETE
mass scan: A variation of instrument where a selected mass is scanned.
Definition: cv.hpp:585
MS_MaxQuant_Phospho__STY__Probabilities_threshold
MS_MaxQuant_Phospho__STY__Probabilities_threshold
MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.
Definition: cv.hpp:8151
MS_adduct_ion
MS_adduct_ion
adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an io...
Definition: cv.hpp:1632
UNIMOD_MolybdopterinGD
UNIMOD_MolybdopterinGD
MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
Definition: cv.hpp:10182
MS_Pegasus_BT
MS_Pegasus_BT
Pegasus BT: LECO bench-top GC time-of-flight mass spectrometer.
Definition: cv.hpp:8577
MS_laser
MS_laser
laser: Device that emits light (electromagnetic radiation) through a process called stimulated emissi...
Definition: cv.hpp:3216
MS_jPOST_dataset_identifier
MS_jPOST_dataset_identifier
jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to e...
Definition: cv.hpp:8352
MS_acquisition_software
MS_acquisition_software
acquisition software: Acquisition software.
Definition: cv.hpp:4764
MS_final_MS_exponent
MS_final_MS_exponent
final MS exponent: Final MS level achieved when performing PFF with the ion trap (e....
Definition: cv.hpp:333
MS_ProteomeDiscoverer_Peptide_CTerminus
MS_ProteomeDiscoverer_Peptide_CTerminus
ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used duri...
Definition: cv.hpp:5448
UNIMOD_CyDye_Cy5
UNIMOD_CyDye_Cy5
CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:10299
MS_charge_remote_fragmentation_OBSOLETE
MS_charge_remote_fragmentation_OBSOLETE
charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not...
Definition: cv.hpp:1152
MS_peptide_Ascore
MS_peptide_Ascore
peptide:Ascore: A-score for PTM site location at the peptide-level.
Definition: cv.hpp:8106
MS_decreasing_m_z_scan
MS_decreasing_m_z_scan
decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
Definition: cv.hpp:591
MS_quality_estimation_by_manual_validation
MS_quality_estimation_by_manual_validation
quality estimation by manual validation: The quality estimation was done manually.
Definition: cv.hpp:3657
UNIMOD_Thr__Cys
UNIMOD_Thr__Cys
Thr->Cys: Thr->Cys substitution.
Definition: cv.hpp:11862
UNIMOD_Lys__Asp
UNIMOD_Lys__Asp
Lys->Asp: Lys->Asp substitution.
Definition: cv.hpp:11652
MS_Byonic_Peptide_LogProb
MS_Byonic_Peptide_LogProb
Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM w...
Definition: cv.hpp:7245
MS_experimental_condition__control_
MS_experimental_condition__control_
experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
Definition: cv.hpp:5847
MS_multiple_ion_monitoring_spectrum
MS_multiple_ion_monitoring_spectrum
multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2385
UNIMOD_Nitro
UNIMOD_Nitro
Nitro: Oxidation to nitro.
Definition: cv.hpp:10011
UNIMOD_Hex_4_HexNAc_2_
UNIMOD_Hex_4_HexNAc_2_
Hex(4)HexNAc(2): Hex(4) HexNAc(2).
Definition: cv.hpp:12441
MS_TOPP_OpenSwathRTNormalizer
MS_TOPP_OpenSwathRTNormalizer
TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized ...
Definition: cv.hpp:7053
MS_msmsEval_quality
MS_msmsEval_quality
msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
Definition: cv.hpp:4482
UNIMOD_C8_QAT
UNIMOD_C8_QAT
C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
Definition: cv.hpp:10332
MS_splash_key
MS_splash_key
splash key: Spectral Hash key, an unique identifier for spectra.
Definition: cv.hpp:8250
MS_peptide_exon_nucleotide_sizes
MS_peptide_exon_nucleotide_sizes
peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to ...
Definition: cv.hpp:8382
MS_Profound_Cluster
MS_Profound_Cluster
Profound:Cluster: The Profound cluster score.
Definition: cv.hpp:4902
MS_Conversion_to_mzML
MS_Conversion_to_mzML
Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
Definition: cv.hpp:2241
MS_alternate_mass
MS_alternate_mass
alternate mass: List of masses a non-standard letter code is replaced with.
Definition: cv.hpp:4491
UO_radian_per_second_per_second
UO_radian_per_second_per_second
radian per second per second: An angular unit acceleration which is equal to the angular acceleration...
Definition: cv.hpp:14037
MS_Microsoft_Excel
MS_Microsoft_Excel
Microsoft Excel: Microsoft Excel (can be used for spectral counting).
Definition: cv.hpp:6627
UNIMOD_Hex_6_HexNAc_4_Me_3_
UNIMOD_Hex_6_HexNAc_4_Me_3_
Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
Definition: cv.hpp:12651
MS_flow_injection_analysis
MS_flow_injection_analysis
flow injection analysis: Sample is directly injected or infused into the ionization source.
Definition: cv.hpp:453
MS_TOPP_DTAExtractor
MS_TOPP_DTAExtractor
TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
Definition: cv.hpp:6909
PEFF_SV
PEFF_SV
SV: Sequence version.
Definition: cv.hpp:195
UNIMOD_dHex_1_Hex_5_HexNAc_3_
UNIMOD_dHex_1_Hex_5_HexNAc_3_
dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
Definition: cv.hpp:12537
MS_API
MS_API
API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas pha...
Definition: cv.hpp:1137
UNIMOD_Glu__Gly
UNIMOD_Glu__Gly
Glu->Gly: Glu->Gly substitution.
Definition: cv.hpp:10470
MS_PROTEINEER_LC
MS_PROTEINEER_LC
PROTEINEER-LC: Bruker PROTEINEER-LC software.
Definition: cv.hpp:2868
MS_TopPIC_error_tolerance
MS_TopPIC_error_tolerance
TopPIC:error tolerance: Error tolerance for precursor and fragment masses in PPM.
Definition: cv.hpp:9168
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before...
Definition: cv.hpp:6690
MS_nanoACQUITY_UPLC_System_with_1D_Technology
MS_nanoACQUITY_UPLC_System_with_1D_Technology
nanoACQUITY UPLC System with 1D Technology: Waters LC-system nanoACQUITY UPLC System with 1D Technolo...
Definition: cv.hpp:5715
UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_
dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
Definition: cv.hpp:12723
UNIMOD_Hex_1_HexNAc_1_NeuGc_5_
UNIMOD_Hex_1_HexNAc_1_NeuGc_5_
Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
Definition: cv.hpp:13308
MS_nanoACQUITY_UPLC_with_HDX_Technology
MS_nanoACQUITY_UPLC_with_HDX_Technology
nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
Definition: cv.hpp:5718
UNIMOD_Biotin_Cayman_10141
UNIMOD_Biotin_Cayman_10141
Biotin:Cayman-10141: Was 15dB-biotin.
Definition: cv.hpp:10392
MS_API_150EX_Prep
MS_API_150EX_Prep
API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
Definition: cv.hpp:798
UNIMOD_Asp__His
UNIMOD_Asp__His
Asp->His: Asp->His substitution.
Definition: cv.hpp:10440
MS_TOPP_CompNovo
MS_TOPP_CompNovo
TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
Definition: cv.hpp:6981
MS_MS2_tag_based_analysis
MS_MS2_tag_based_analysis
MS2 tag-based analysis: MS2 tag-based analysis.
Definition: cv.hpp:6513
UNIMOD_Methylmalonylation
UNIMOD_Methylmalonylation
Methylmalonylation: Methylmalonylation on Serine.
Definition: cv.hpp:11118
MS_PDA
MS_PDA
PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visi...
Definition: cv.hpp:2529
UNIMOD_Arg__Lys
UNIMOD_Arg__Lys
Arg->Lys: Arg->Lys substitution.
Definition: cv.hpp:10674
MS_D_Score
MS_D_Score
D-Score: D-Score for PTM site location at the PSM-level.
Definition: cv.hpp:8061
UNIMOD_Hex_6_HexNAc_1_
UNIMOD_Hex_6_HexNAc_1_
Hex(6)HexNAc(1): Hex(6) HexNAc.
Definition: cv.hpp:13683
UNIMOD_MercaptoEthanol
UNIMOD_MercaptoEthanol
MercaptoEthanol: 2-OH-ethyl thio-Ser.
Definition: cv.hpp:11130
MS_chemical_compound
MS_chemical_compound
chemical compound: A substance formed by chemical union of two or more elements or ingredients in def...
Definition: cv.hpp:3345
MS_peptide_sharing_details
MS_peptide_sharing_details
peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this...
Definition: cv.hpp:3840
MS_photoionization
MS_photoionization
photoionization: The ionization of an atom or molecule by a photon, written M + h?...
Definition: cv.hpp:1335
MS_tag_search
MS_tag_search
tag search: A sequence tag search.
Definition: cv.hpp:3705
MS_ProteinScape_SearchResultId
MS_ProteinScape_SearchResultId
ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape d...
Definition: cv.hpp:4890
MS_synchronous_prefilter_selection
MS_synchronous_prefilter_selection
synchronous prefilter selection: Synchronous prefilter selection.
Definition: cv.hpp:8034
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_
dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
Definition: cv.hpp:12939
MS_total_ion_current
MS_total_ion_current
total ion current: The sum of all the separate ion currents carried by the ions of different m/z cont...
Definition: cv.hpp:1407
MS_SIC_chromatogram
MS_SIC_chromatogram
SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of th...
Definition: cv.hpp:2553
UNIMOD_Pro__Asn
UNIMOD_Pro__Asn
Pro->Asn: Pro->Asn substitution.
Definition: cv.hpp:11772
MS_precursor_ion_detection_probability
MS_precursor_ion_detection_probability
precursor ion detection probability: Probability of detecting precursor when parent protein is presen...
Definition: cv.hpp:7116
UNIMOD_Gln__Glu
UNIMOD_Gln__Glu
Gln->Glu: Gln->Glu substitution.
Definition: cv.hpp:10650
MS_p_value__protein_diff_from_1_randomly__OBSOLETE
MS_p_value__protein_diff_from_1_randomly__OBSOLETE
p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
Definition: cv.hpp:3867
MS_Bruker_FID_nativeID_format
MS_Bruker_FID_nativeID_format
Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2991
MS_Bruker_Daltonics_BioTOF_series
MS_Bruker_Daltonics_BioTOF_series
Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
Definition: cv.hpp:5010
MS_SEQUEST_Full
MS_SEQUEST_Full
SEQUEST:Full:
Definition: cv.hpp:3792
MS_height_peak_picking
MS_height_peak_picking
height peak picking: Spectral peak processing conducted on the acquired data to convert profile data ...
Definition: cv.hpp:3096
MS_Byonic__Protein_AbsLogProb
MS_Byonic__Protein_AbsLogProb
Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7380
UNIMOD_Methylpyrroline
UNIMOD_Methylpyrroline
Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
Definition: cv.hpp:10209
UNIMOD_Asp__Gln
UNIMOD_Asp__Gln
Asp->Gln: Asp->Gln substitution.
Definition: cv.hpp:11475
UNIMOD_Glu__Phe
UNIMOD_Glu__Phe
Glu->Phe: Glu->Phe substitution.
Definition: cv.hpp:11493
MS_ProteomeDiscoverer_ion_settings
MS_ProteomeDiscoverer_ion_settings
ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
Definition: cv.hpp:7437
MS_neutral_loss
MS_neutral_loss
neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds t...
Definition: cv.hpp:1578
MS_MaxQuant_peptide_counts__razor_unique_
MS_MaxQuant_peptide_counts__razor_unique_
MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQu...
Definition: cv.hpp:6111
MS_Channeltron_Detector
MS_Channeltron_Detector
Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multipl...
Definition: cv.hpp:642
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr paramete...
Definition: cv.hpp:5526
MS_spectra_data_details
MS_spectra_data_details
spectra data details: Child-terms contain information to map the results back to spectra.
Definition: cv.hpp:4992
MS_AutoSpec_Premier
MS_AutoSpec_Premier
AutoSpec Premier: Waters AutoSpec Premier magnetic sector instrument.
Definition: cv.hpp:7278
MS_taxonomy__NCBI_TaxID
MS_taxonomy__NCBI_TaxID
taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
Definition: cv.hpp:4797
MS_time_of_flight_mass_spectrometer_OBSOLETE
MS_time_of_flight_mass_spectrometer_OBSOLETE
time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region aft...
Definition: cv.hpp:1419
UO_hundredweight
UO_hundredweight
hundredweight: An imperial mass unit which is equivalent to 50.802,345,44 kilograms,...
Definition: cv.hpp:14904
UNIMOD_Ser__Phe
UNIMOD_Ser__Phe
Ser->Phe: Ser->Phe substitution.
Definition: cv.hpp:10695
UNIMOD_Cation_K
UNIMOD_Cation_K
Cation:K: Replacement of proton by potassium.
Definition: cv.hpp:10368
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition: Export.hpp:32
UNIMOD_Hex_3_HexNAc_3_
UNIMOD_Hex_3_HexNAc_3_
Hex(3)HexNAc(3): Hex(3) HexNAc(3).
Definition: cv.hpp:13332
UNIMOD_Phe__Xle
UNIMOD_Phe__Xle
Phe->Xle: Phe->Leu/Ile substitution.
Definition: cv.hpp:10482
UNIMOD_FMN
UNIMOD_FMN
FMN: O3-(riboflavin phosphoryl).
Definition: cv.hpp:10227
MS_quantitation_analysis_summary
MS_quantitation_analysis_summary
quantitation analysis summary: The overall workflow of this quantitation report.
Definition: cv.hpp:5913
MS_attenuation
MS_attenuation
attenuation: Describes the reduction of the intensity of the laser beam energy.
Definition: cv.hpp:3240
UO_milli_300000297
UO_milli_300000297
milli: A prefix in the metric system denoting a factor of one thousand.
Definition: cv.hpp:14688
MS_BSI_software
MS_BSI_software
BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
Definition: cv.hpp:6270
MS_Percolator_input_parameter
MS_Percolator_input_parameter
Percolator input parameter: Search engine input parameters specific to Percolator.
Definition: cv.hpp:6768
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge r...
Definition: cv.hpp:5280
UO_attomole
UO_attomole
attomole: A substance unit equal to 10^[-18] mol.
Definition: cv.hpp:13935
MS_MALDI_Synapt_MS
MS_MALDI_Synapt_MS
MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
Definition: cv.hpp:5742
MS_Synapt_MS
MS_Synapt_MS
Synapt MS: Waters oa-ToF based Synapt MS.
Definition: cv.hpp:5760
MS_TopPIC_N_term_form
MS_TopPIC_N_term_form
TopPIC:N-term form: N-terminal forms of proteins allowed in TopPIC searching.
Definition: cv.hpp:9165
UO_nanosievert
UO_nanosievert
nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 1...
Definition: cv.hpp:14232
MS_theoretical_mass
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
Definition: cv.hpp:3810
MS_TopPIC_MIScore
MS_TopPIC_MIScore
TopPIC:MIScore: Modification identification score.
Definition: cv.hpp:9219
MS_SSQ_7000
MS_SSQ_7000
SSQ 7000: ThermoFinnigan SSQ 7000 MS.
Definition: cv.hpp:2913
MS_spectral_count_peptide_level_quantitation
MS_spectral_count_peptide_level_quantitation
spectral count peptide level quantitation: Spectral count peptide level quantitation.
Definition: cv.hpp:6489
MS_DiART_reagent_115
MS_DiART_reagent_115
DiART reagent 115: The name of the sample labelled with the DiART reagent 115.
Definition: cv.hpp:8739
MS_ion_chemical_type_OBSOLETE
MS_ion_chemical_type_OBSOLETE
ion chemical type: Ion Type.
Definition: cv.hpp:2130
MS_constant_neutral_mass_loss_OBSOLETE
MS_constant_neutral_mass_loss_OBSOLETE
constant neutral mass loss: A spectrum formed of all product ions that have been produced with a sele...
Definition: cv.hpp:606
UNIMOD_Ser__Gln
UNIMOD_Ser__Gln
Ser->Gln: Ser->Gln substitution.
Definition: cv.hpp:11856
UNIMOD_Gly__Met
UNIMOD_Gly__Met
Gly->Met: Gly->Met substitution.
Definition: cv.hpp:11577
MS_Th
MS_Th
Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an...
Definition: cv.hpp:390
UNIMOD_Hex_5_Phos_1_
UNIMOD_Hex_5_Phos_1_
Hex(5)Phos(1): Hex(5) Phos.
Definition: cv.hpp:12882
UNIMOD_Pro__Thr
UNIMOD_Pro__Thr
Pro->Thr: Pro->Thr substitution.
Definition: cv.hpp:10635
UO_degree_Fahrenheit
UO_degree_Fahrenheit
degree Fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahre...
Definition: cv.hpp:14382
UNIMOD_HexNAc_2_NeuGc_1_
UNIMOD_HexNAc_2_NeuGc_1_
HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
Definition: cv.hpp:12801
UNIMOD_Glu__His
UNIMOD_Glu__His
Glu->His: Glu->His substitution.
Definition: cv.hpp:11496
MS_Q3_spectrum
MS_Q3_spectrum
Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2358
UO_weber
UO_weber
weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn ...
Definition: cv.hpp:14475
MS_TOPP_XTandemAdapter
MS_TOPP_XTandemAdapter
TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
Definition: cv.hpp:7005
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative fac...
Definition: cv.hpp:5499
MS_selection_window_attribute
MS_selection_window_attribute
selection window attribute: Selection window properties that are associated with a value.
Definition: cv.hpp:2256
MS_EThcD
MS_EThcD
EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combin...
Definition: cv.hpp:8349
UNIMOD_ethylamino
UNIMOD_ethylamino
ethylamino: Ethyl amino.
Definition: cv.hpp:11127
MS_Paragon__FDR_analysis
MS_Paragon__FDR_analysis
Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
Definition: cv.hpp:7731
MS_value_greater_than_zero
MS_value_greater_than_zero
value greater than zero: Positive value range.
Definition: cv.hpp:7368
MS_product_interpretation_rank
MS_product_interpretation_rank
product interpretation rank: The integer rank given an interpretation of an observed product ion....
Definition: cv.hpp:3486
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
Definition: cv.hpp:12915
UNIMOD_Glu__Trp
UNIMOD_Glu__Trp
Glu->Trp: Glu->Trp substitution.
Definition: cv.hpp:11520
MS_native_spectrum_identifier_format
MS_native_spectrum_identifier_format
native spectrum identifier format: Describes how the native spectrum identifiers are formated.
Definition: cv.hpp:2970
MS_impact_II
MS_impact_II
impact II: Bruker Daltonics' impact II.
Definition: cv.hpp:8457
UNIMOD_Arg2PG
UNIMOD_Arg2PG
Arg2PG: Adduct of phenylglyoxal with Arg.
Definition: cv.hpp:11001
UNIMOD_NEMsulfur
UNIMOD_NEMsulfur
NEMsulfur: N-ethylmaleimideSulfur.
Definition: cv.hpp:12168
PEFF_CustomTag
PEFF_CustomTag
CustomTag: A tag (short string) used to categorize a sequence annotation (variant or modification).
Definition: cv.hpp:174
UO_unit_per_volume_unit
UO_unit_per_volume_unit
unit per volume unit: A concentration unit which is a standard measure of the number of units,...
Definition: cv.hpp:14328
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
ProteomeDiscoverer:Reference Database: Full path database name.
Definition: cv.hpp:5619
UNIMOD_Hex_9_
UNIMOD_Hex_9_
Hex(9): Hex(9).
Definition: cv.hpp:13701
MS_BioAnalyst
MS_BioAnalyst
BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
Definition: cv.hpp:2670
MS_decoy_DB_type_randomized
MS_decoy_DB_type_randomized
decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the or...
Definition: cv.hpp:4023
MS_PSM_level_statistical_threshold
MS_PSM_level_statistical_threshold
PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
Definition: cv.hpp:7899
MS_analysis_attribute
MS_analysis_attribute
analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.
Definition: cv.hpp:8520
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with score...
Definition: cv.hpp:5343
MS_frag__y_ion
MS_frag__y_ion
frag: y ion: Fragmentation information, type of product: y ion.
Definition: cv.hpp:4086
UNIMOD_Dehydrated
UNIMOD_Dehydrated
Dehydrated: Dehydration.
Definition: cv.hpp:9420
UNIMOD_Xlink_DSSO_279_
UNIMOD_Xlink_DSSO_279_
Xlink:DSSO[279]: Tris-quenched monolink of DSSO crosslinker.
Definition: cv.hpp:13515
MS_sample_plate
MS_sample_plate
sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
Definition: cv.hpp:6231
MS_in_source_collision_induced_dissociation
MS_in_source_collision_induced_dissociation
in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excit...
Definition: cv.hpp:6054
MS_wavelet_transformation_smoothing
MS_wavelet_transformation_smoothing
wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transf...
Definition: cv.hpp:6420
UNIMOD_Delta_H_4_C_2_O__1_S_1_
UNIMOD_Delta_H_4_C_2_O__1_S_1_
Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
Definition: cv.hpp:9957
MS_IDMS_OBSOLETE
MS_IDMS_OBSOLETE
IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an iso...
Definition: cv.hpp:1053
MS_negative_scan
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition: cv.hpp:735
UNIMOD_maleimide5
UNIMOD_maleimide5
maleimide5: Maleimide-5-saccharide.
Definition: cv.hpp:11229
UO_kilo
UO_kilo
kilo: A prefix in the metric system denoting a factor of one thousand.
Definition: cv.hpp:14679
MS_IonSpec_instrument_model
MS_IonSpec_instrument_model
IonSpec instrument model: IonSpec corporation instrument model.
Definition: cv.hpp:708
PEFF_DbUniqueId
PEFF_DbUniqueId
DbUniqueId: Sequence Database unique identifier.
Definition: cv.hpp:177
UNIMOD_dHex_2_Hex_2_HexNAc_4_
UNIMOD_dHex_2_Hex_2_HexNAc_4_
dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
Definition: cv.hpp:13161
MS_TOPP_OpenSwath_component
MS_TOPP_OpenSwath_component
TOPP OpenSwath component: OpenSwath component of the TOPP software.
Definition: cv.hpp:7038
MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE
MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE
travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on ...
Definition: cv.hpp:5802
UNIMOD_CyDye_Cy3
UNIMOD_CyDye_Cy3
CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:10296
UNIMOD_His__Asn
UNIMOD_His__Asn
His->Asn: His->Asn substitution.
Definition: cv.hpp:9993
MS_ion_desolvation_OBSOLETE
MS_ion_desolvation_OBSOLETE
ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heatin...
Definition: cv.hpp:1743
MS_M_LDI_L
MS_M_LDI_L
M@LDI L: Waters oa-ToF based MALDI L.
Definition: cv.hpp:876
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported da...
Definition: cv.hpp:5520
MS_mass_selective_instability_OBSOLETE
MS_mass_selective_instability_OBSOLETE
mass selective instability: A method for selective ejection of ions according to their m/z value in a...
Definition: cv.hpp:1506
UNIMOD_Trp__Oxolactone
UNIMOD_Trp__Oxolactone
Trp->Oxolactone: Tryptophan oxidation to oxolactone.
Definition: cv.hpp:9870
MS_regular_expression
MS_regular_expression
regular expression: Regular expression.
Definition: cv.hpp:7887
UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_
dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
Definition: cv.hpp:12513
MS_data_filtering
MS_data_filtering
data filtering: Filtering out part of the data.
Definition: cv.hpp:4863
MS_inductive_detector
MS_inductive_detector
inductive detector: Inductive detector.
Definition: cv.hpp:2538
MS_percent_of_base_peak
MS_percent_of_base_peak
percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percen...
Definition: cv.hpp:744
MS_PSM_level_combined_FDRScore
MS_PSM_level_combined_FDRScore
PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically ...
Definition: cv.hpp:7518
MS_protein_identification_confidence_metric
MS_protein_identification_confidence_metric
protein identification confidence metric: Identification confidence metric for a protein.
Definition: cv.hpp:4029
UNIMOD_Cresylphosphate
UNIMOD_Cresylphosphate
Cresylphosphate: O-toluyl-phosphorylation.
Definition: cv.hpp:12018
UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
Definition: cv.hpp:12888
UNIMOD_methylsulfonylethyl
UNIMOD_methylsulfonylethyl
methylsulfonylethyl: Reaction with methyl vinyl sulfone.
Definition: cv.hpp:12255
MS_lower_score_better
MS_lower_score_better
lower score better: Indicates that a lower score is better.
Definition: cv.hpp:6774
MS_____R____P_
MS_____R____P_
(?<=R)(?!P): Regular expression for Arg-C.
Definition: cv.hpp:4236
MS_temperature_array
MS_temperature_array
temperature array: A data array of temperature measurements.
Definition: cv.hpp:3165
UNIMOD_Met__Hsl
UNIMOD_Met__Hsl
Met->Hsl: Homoserine lactone.
Definition: cv.hpp:9402
UNIMOD_Hex_6_Phos_1_
UNIMOD_Hex_6_Phos_1_
Hex(6)Phos(1): Hex(6) Phos.
Definition: cv.hpp:12960
MS_onium_ion_OBSOLETE
MS_onium_ion_OBSOLETE
onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methoni...
Definition: cv.hpp:1689
MS_accelerating_voltage
MS_accelerating_voltage
accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectr...
Definition: cv.hpp:1473
UO_base_pair
UO_base_pair
base pair: A count unit which contains one nucleotide.
Definition: cv.hpp:14529
MS_proteogenomics_search
MS_proteogenomics_search
proteogenomics search: Proteogenomics search performed.
Definition: cv.hpp:8361
UNIMOD_Ser__LacticAcid
UNIMOD_Ser__LacticAcid
Ser->LacticAcid: Lactic acid from N-term Ser.
Definition: cv.hpp:10128
UNIMOD_Unknown_302
UNIMOD_Unknown_302
Unknown:302: Unidentified modification of 301.9864 found in open search.
Definition: cv.hpp:13773
MS_protonated_molecule_OBSOLETE
MS_protonated_molecule_OBSOLETE
protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented...
Definition: cv.hpp:1698
MS_constant_neutral_mass_loss_spectrum
MS_constant_neutral_mass_loss_spectrum
constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1548
MS_ProteinLynx_Global_Server
MS_ProteinLynx_Global_Server
ProteinLynx Global Server: Waters software for data analysis.
Definition: cv.hpp:2463
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_
Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
Definition: cv.hpp:13374
MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps
MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps
two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatog...
Definition: cv.hpp:6708
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_
dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
Definition: cv.hpp:12927
MS_UIMF_format
MS_UIMF_format
UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an interme...
Definition: cv.hpp:8046
MS_ICPL_reagent_4
MS_ICPL_reagent_4
ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
Definition: cv.hpp:8277
MS_cross_link_donor
MS_cross_link_donor
cross-link donor: The Cross-linking donor, assigned according to the following rules: the export soft...
Definition: cv.hpp:7977
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM),...
Definition: cv.hpp:5256
MS_autodetachment
MS_autodetachment
autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy gre...
Definition: cv.hpp:1722
MS_database_IPI_cow
MS_database_IPI_cow
database IPI_cow: International Protein Index database for Bos taurus sequences.
Definition: cv.hpp:4269
UNIMOD_PhosphoCytidine
UNIMOD_PhosphoCytidine
PhosphoCytidine: Cytidine monophosphate.
Definition: cv.hpp:13473
MS_highest_observed_wavelength
MS_highest_observed_wavelength
highest observed wavelength: Highest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2517
MS_PSM_level_q_value
MS_PSM_level_q_value
PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
Definition: cv.hpp:7512
UNIMOD_Asn__Pro
UNIMOD_Asn__Pro
Asn->Pro: Asn->Pro substitution.
Definition: cv.hpp:11736
UNIMOD_Lys__Met
UNIMOD_Lys__Met
Lys->Met: Lys->Met substitution.
Definition: cv.hpp:10551
MS_MS1_spectrum
MS_MS1_spectrum
MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-sta...
Definition: cv.hpp:2349
UNIMOD_DiART6plex117
UNIMOD_DiART6plex117
DiART6plex117: Accurate mass for DiART6plex 117.
Definition: cv.hpp:12297
MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold
MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold
ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectr...
Definition: cv.hpp:5259
MS_6230A_Time_of_Flight_LC_MS
MS_6230A_Time_of_Flight_LC_MS
6230A Time-of-Flight LC/MS: The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8811
UO_coulomb
UO_coulomb
coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of...
Definition: cv.hpp:14457
pwiz::cv::CV::version
std::string version
the version of the CV from which the referred-to terms are drawn.
Definition: cv.hpp:14927
UO_heat_conduction_unit
UO_heat_conduction_unit
heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of t...
Definition: cv.hpp:14586
UNIMOD_Val__His
UNIMOD_Val__His
Val->His: Val->His substitution.
Definition: cv.hpp:11895
UNIMOD_Ser__Tyr
UNIMOD_Ser__Tyr
Ser->Tyr: Ser->Tyr substitution.
Definition: cv.hpp:10713
MS_magnetic_deflection
MS_magnetic_deflection
magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to ...
Definition: cv.hpp:1056
MS_Morpheus_Morpheus_score
MS_Morpheus_Morpheus_score
Morpheus:Morpheus score: Morpheus score for PSMs.
Definition: cv.hpp:8445
MS_SEQUEST_sort_by_Scan
MS_SEQUEST_sort_by_Scan
SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
Definition: cv.hpp:3684
MS_chemi_ionization
MS_chemi_ionization
chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an i...
Definition: cv.hpp:1731
MS_Quattro_micro_GC
MS_Quattro_micro_GC
Quattro micro GC: Waters (triple) quadrupole based Quattro micro GC.
Definition: cv.hpp:5781
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of th...
Definition: cv.hpp:5274
MS_selected_ion_monitoring
MS_selected_ion_monitoring
selected ion monitoring: The operation of a mass spectrometer in which the intensities of several spe...
Definition: cv.hpp:981
MS_ProteinProphet
MS_ProteinProphet
ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM o...
Definition: cv.hpp:7317
MS_modification_specificity_peptide_C_term
MS_modification_specificity_peptide_C_term
modification specificity peptide C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:4005
MS_no_modification_threshold
MS_no_modification_threshold
no modification threshold: No statistical threshold for accepting or rejecting that a modification po...
Definition: cv.hpp:8475
MS_transmission
MS_transmission
transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number e...
Definition: cv.hpp:1113
MS_mass_type_settings
MS_mass_type_settings
mass type settings: The type of mass difference value to be considered by the search engine (monoisot...
Definition: cv.hpp:4059
UO_mebibyte
UO_mebibyte
mebibyte: An information unit which is equal to 1024 KiB.
Definition: cv.hpp:14535
MS_SELDI
MS_SELDI
SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas pha...
Definition: cv.hpp:1368
UNIMOD_BEMAD_ST_2H_6_
UNIMOD_BEMAD_ST_2H_6_
BEMAD_ST:2H(6): Beta elimination of modified S or T followed by Michael addition of labelled DTT.
Definition: cv.hpp:10914
PEFF_ModRes
PEFF_ModRes
ModRes: Modified residue without PSI-MOD identifier.
Definition: cv.hpp:213
UO_milligram_per_milliliter
UO_milligram_per_milliliter
milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divid...
Definition: cv.hpp:14325
MS_peptide_level_quantification_datatype
MS_peptide_level_quantification_datatype
peptide-level quantification datatype: The data type of the value reported in a QuantLayer for a pept...
Definition: cv.hpp:8631
UO_giga
UO_giga
giga: A prefix in the metric system denoting a factor of ten to the power of 9.
Definition: cv.hpp:14673
MS_proteoform_level_local_FDR_threshold
MS_proteoform_level_local_FDR_threshold
proteoform-level local FDR threshold: Threshold for the local false discovery rate of proteoforms.
Definition: cv.hpp:9156
MS_TOPP_FeatureFinderMetabo
MS_TOPP_FeatureFinderMetabo
TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
Definition: cv.hpp:6954
MS_GPS_Explorer
MS_GPS_Explorer
GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2652
MS_LTQ_FT_Ultra
MS_LTQ_FT_Ultra
LTQ FT Ultra: LTQ FT Ultra.
Definition: cv.hpp:2280
UNIMOD_Hex_2_HexNAc_3_NeuAc_2_
UNIMOD_Hex_2_HexNAc_3_NeuAc_2_
Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
Definition: cv.hpp:13203
MS_alternating_polarity_mode
MS_alternating_polarity_mode
alternating polarity mode: Polarities of the scans of a run are alternating, i.e. both positive and n...
Definition: cv.hpp:8922
MS_selected_reaction_monitoring_spectrum
MS_selected_reaction_monitoring_spectrum
selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2400
UNIMOD_Pro__Trp
UNIMOD_Pro__Trp
Pro->Trp: Pro->Trp substitution.
Definition: cv.hpp:11778
MS_u_OBSOLETE
MS_u_OBSOLETE
u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground...
Definition: cv.hpp:1119
MS_positive_scan
MS_positive_scan
positive scan: Polarity of the scan is positive.
Definition: cv.hpp:738
MS_distributed_normalized_spectral_abundance_factor
MS_distributed_normalized_spectral_abundance_factor
distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor ...
Definition: cv.hpp:8097
UO_second
UO_second
second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation correspo...
Definition: cv.hpp:13833
MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps
MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps
two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chr...
Definition: cv.hpp:6714
MS_retention_time_s__OBSOLETE
MS_retention_time_s__OBSOLETE
retention time(s): Retention time of the spectrum from the source file.
Definition: cv.hpp:3801
UNIMOD_Met__Asp
UNIMOD_Met__Asp
Met->Asp: Met->Asp substitution.
Definition: cv.hpp:11685
MS_LCQ_Deca_XP_Plus
MS_LCQ_Deca_XP_Plus
LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
Definition: cv.hpp:873
MS_IsoPrime
MS_IsoPrime
IsoPrime: Waters IsoPrime MS.
Definition: cv.hpp:858
UNIMOD_His__Ser
UNIMOD_His__Ser
His->Ser: His->Ser substitution.
Definition: cv.hpp:11616
UNIMOD_Gly__Arg
UNIMOD_Gly__Arg
Gly->Arg: Gly->Arg substitution.
Definition: cv.hpp:10512
MS_curator_keyword
MS_curator_keyword
curator keyword: Keyword assigned by a data curator.
Definition: cv.hpp:6198
MS_PTMProphet
MS_PTMProphet
PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the p...
Definition: cv.hpp:7326
MS_Mascot_MGF_format
MS_Mascot_MGF_format
Mascot MGF format: Mascot MGF file format.
Definition: cv.hpp:3669
UNIMOD_Biotin_Thermo_21330
UNIMOD_Biotin_Thermo_21330
Biotin:Thermo-21330: Biotin_PEG4.
Definition: cv.hpp:12357
UNIMOD_dHex_2_Hex_3_
UNIMOD_dHex_2_Hex_3_
dHex(2)Hex(3): DHex(2) Hex(3).
Definition: cv.hpp:12828
MS_Progenesis_automatic_alignment
MS_Progenesis_automatic_alignment
Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
Definition: cv.hpp:6009
MS_unlabeled_sample
MS_unlabeled_sample
unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "ligh...
Definition: cv.hpp:6558
MS_mzR
MS_mzR
mzR: Bioconductor package mzR for reading and writing mass spectrometry data files.
Definition: cv.hpp:9030
UNIMOD_Cysteinyl
UNIMOD_Cysteinyl
Cysteinyl: Cysteinylation.
Definition: cv.hpp:9927
UNIMOD_Unknown_250
UNIMOD_Unknown_250
Unknown:250: Unidentified modification of 249.981 found in open search.
Definition: cv.hpp:13770
MS_microelectrospray
MS_microelectrospray
microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is...
Definition: cv.hpp:1761
UNIMOD_Asn__Arg
UNIMOD_Asn__Arg
Asn->Arg: Asn->Arg substitution.
Definition: cv.hpp:11742
MS_multidimensional_chromatography_modulation_description
MS_multidimensional_chromatography_modulation_description
multidimensional chromatography modulation description: Multidimensional chromatography modulation de...
Definition: cv.hpp:6702
MS_Glu_C
MS_Glu_C
Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6171
MS_alternate_single_letter_codes
MS_alternate_single_letter_codes
alternate single letter codes: List of standard residue one letter codes which are used to replace a ...
Definition: cv.hpp:4488
MS_protein_level_quantification_datatype
MS_protein_level_quantification_datatype
protein-level quantification datatype: The data type of the value reported in a QuantLayer for a prot...
Definition: cv.hpp:8634
UNIMOD_Ala__Gly
UNIMOD_Ala__Gly
Ala->Gly: Ala->Gly substitution.
Definition: cv.hpp:10410
MS_TOPP_MRMMapper
MS_TOPP_MRMMapper
TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
Definition: cv.hpp:7035
MS_DeBunker_score_threshold
MS_DeBunker_score_threshold
DeBunker:score threshold: Threshold for DeBunker PTM site location score.
Definition: cv.hpp:8133
MS_Acquity_TQD
MS_Acquity_TQD
Acquity TQD: Waters quadrupole based Acquity TQD.
Definition: cv.hpp:5778
MS_Synapt_G2_S_MS
MS_Synapt_G2_S_MS
Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
Definition: cv.hpp:5754
MS_Trypsin_K
MS_Trypsin_K
Trypsin/K (Lys-C): Endoproteinase Lys-C.
Definition: cv.hpp:4338
MS_scan_attribute
MS_scan_attribute
scan attribute: Scan properties that are associated with a value.
Definition: cv.hpp:2115
MS_nanospray
MS_nanospray
nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min....
Definition: cv.hpp:1767
UNIMOD_DiART6plex116_119
UNIMOD_DiART6plex116_119
DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
Definition: cv.hpp:12294
MS_contact_address
MS_contact_address
contact address: Postal address of the contact person or organization.
Definition: cv.hpp:2412
UNIMOD_Val__Glu
UNIMOD_Val__Glu
Val->Glu: Val->Glu substitution.
Definition: cv.hpp:10758
MS_ASN_1
MS_ASN_1
ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
Definition: cv.hpp:4455
MS_PIA_workflow_parameter
MS_PIA_workflow_parameter
PIA workflow parameter: A parameter set for a single PIA analysis.
Definition: cv.hpp:7617
MS_H3PO4_neutral_loss_OBSOLETE
MS_H3PO4_neutral_loss_OBSOLETE
H3PO4 neutral loss: Neutral loss of phosphoric acid.
Definition: cv.hpp:7821
UNIMOD_Xle__His
UNIMOD_Xle__His
Xle->His: Leu/Ile->His substitution.
Definition: cv.hpp:10575
UNIMOD_Label_2H_10_
UNIMOD_Label_2H_10_
Label:2H(10): 2H(10) label.
Definition: cv.hpp:12111
MS_MIKES_OBSOLETE
MS_MIKES_OBSOLETE
MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass s...
Definition: cv.hpp:1302
UNIMOD_Delta_H_4_C_3_
UNIMOD_Delta_H_4_C_3_
Delta:H(4)C(3): Propionaldehyde +40.
Definition: cv.hpp:9807
MS_Maui
MS_Maui
Maui: The Maltcms Graphical User Interface.
Definition: cv.hpp:7806
MS_fast_ion_bombardment
MS_fast_ion_bombardment
fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions havi...
Definition: cv.hpp:1920
UO_colony_forming_unit_per_milliliter
UO_colony_forming_unit_per_milliliter
colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers...
Definition: cv.hpp:14436
UNIMOD_Phytochromobilin
UNIMOD_Phytochromobilin
Phytochromobilin: Phytochromobilin.
Definition: cv.hpp:10089
MS_SEQUEST_ProcessCV
MS_SEQUEST_ProcessCV
SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
Definition: cv.hpp:3720
MS_product_ion_mobility
MS_product_ion_mobility
product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectromet...
Definition: cv.hpp:6321
MS_protein_level_result_list_attribute
MS_protein_level_result_list_attribute
protein-level result list attribute: Attribute of an entire protein list.
Definition: cv.hpp:8568
UNIMOD_Trp__Val
UNIMOD_Trp__Val
Trp->Val: Trp->Val substitution.
Definition: cv.hpp:11958
MS_AE_OBSOLETE
MS_AE_OBSOLETE
AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a ...
Definition: cv.hpp:1005
MS_merge_of_runs_of_1D_gel_bands
MS_merge_of_runs_of_1D_gel_bands
merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
Definition: cv.hpp:5886
UNIMOD_Label_13C_3_15N_1_
UNIMOD_Label_13C_3_15N_1_
Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
Definition: cv.hpp:12105
MS_ProteomeDiscoverer_Delta_Score
MS_ProteomeDiscoverer_Delta_Score
ProteomeDiscoverer:Delta Score: The Delta Score reported by Proteome Discoverer version 2.
Definition: cv.hpp:8925
UNIMOD_Acetyl
UNIMOD_Acetyl
Acetyl: Acetylation.
Definition: cv.hpp:9372
MS_PeakPicker_OBSOLETE
MS_PeakPicker_OBSOLETE
PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
Definition: cv.hpp:2958
MS_multiple_reaction_monitoring_spectrum
MS_multiple_reaction_monitoring_spectrum
multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2397
MS_data_transformation
MS_data_transformation
data transformation: Terms used to describe types of data processing.
Definition: cv.hpp:1944
MS_peptide_sequence_level_local_FDR
MS_peptide_sequence_level_local_FDR
peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides ...
Definition: cv.hpp:7527
MS_PTM_localization_distinct_peptide_level_statistic
MS_PTM_localization_distinct_peptide_level_statistic
PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localiza...
Definition: cv.hpp:8100
MS_TMT_reagent_127C
MS_TMT_reagent_127C
TMT reagent 127C: The name of the sample labelled with the TMT reagent 127C.
Definition: cv.hpp:8712
MS_ProteomeDiscoverer_Static_Modification_for_X
MS_ProteomeDiscoverer_Static_Modification_for_X
ProteomeDiscoverer:Static Modification for X: Static Modification for X.
Definition: cv.hpp:5586
UO_gigabyte
UO_gigabyte
gigabyte: An information unit which is equal to 1000000000 bytes.
Definition: cv.hpp:14790
MS_retention_time_alignment
MS_retention_time_alignment
retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free prote...
Definition: cv.hpp:2904
MS_peptide_sequence_level_result_list_statistic
MS_peptide_sequence_level_result_list_statistic
peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the li...
Definition: cv.hpp:8565
UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_
UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_
dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:13293
MS_solariX
MS_solariX
solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
Definition: cv.hpp:5052
MS_positive_ion_mode_OBSOLETE
MS_positive_ion_mode_OBSOLETE
positive ion mode: OBSOLETE.
Definition: cv.hpp:528
MS_field_free_region
MS_field_free_region
field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields...
Definition: cv.hpp:1032
MS_TopPIC_spectral_E_value
MS_TopPIC_spectral_E_value
TopPIC:spectral E-value: TopPIC spectrum-level E-value.
Definition: cv.hpp:9207
MS_XCMS_into
MS_XCMS_into
XCMS:into: Feature intensity produced by XCMS findPeaks() from integrated peak intensity.
Definition: cv.hpp:8910
MS_TOPP_noise_filter
MS_TOPP_noise_filter
TOPP noise filter: Noise filter component of the TOPP software.
Definition: cv.hpp:6840
UO_light_unit
UO_light_unit
light unit: A unit which is a standard measure of the intensity of light.
Definition: cv.hpp:14268
UNIMOD_Biotin_Thermo_88310
UNIMOD_Biotin_Thermo_88310
Biotin:Thermo-88310: Desthiobiotin modification of lysine.
Definition: cv.hpp:11352
MS_DiART_reagent_116
MS_DiART_reagent_116
DiART reagent 116: The name of the sample labelled with the DiART reagent 116.
Definition: cv.hpp:8742
UNIMOD_Glu__Gln
UNIMOD_Glu__Gln
Glu->Gln: Glu->Gln substitution.
Definition: cv.hpp:10461
UO_radiation_unit
UO_radiation_unit
radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radi...
Definition: cv.hpp:14181
UNIMOD_Molybdopterin
UNIMOD_Molybdopterin
Molybdopterin: Molybdopterin.
Definition: cv.hpp:10095
MS_spectrum_identification_list_result_details
MS_spectrum_identification_list_result_details
spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificati...
Definition: cv.hpp:7764
MS_database_UniProtKB_Swiss_Prot
MS_database_UniProtKB_Swiss_Prot
database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
Definition: cv.hpp:3771
MS_TopMG_max_shift
MS_TopMG_max_shift
TopMG:max shift: Maximum value of the mass shift (in Dalton).
Definition: cv.hpp:9237
MS_data_processing_start_time
MS_data_processing_start_time
data processing start time: The time that a data processing action was started.
Definition: cv.hpp:7755
MS_TopPIC_use_TopFD_feature
MS_TopPIC_use_TopFD_feature
TopPIC:use TopFD feature: Proteoform identification using TopFD feature file.
Definition: cv.hpp:9204
UO_relative_luminescence_unit
UO_relative_luminescence_unit
relative luminescence unit: A relative light unit which is a measure of relative luminescence intensi...
Definition: cv.hpp:14736
MS_spectrum_from_ProteinScape_database_nativeID_format
MS_spectrum_from_ProteinScape_database_nativeID_format
spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4998
UNIMOD_Lys__Ala
UNIMOD_Lys__Ala
Lys->Ala: Lys->Ala substitution.
Definition: cv.hpp:11646
UNIMOD_dHex_2_Hex_3_HexNAc_3_
UNIMOD_dHex_2_Hex_3_HexNAc_3_
dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
Definition: cv.hpp:13356
UO_molar_mass_unit
UO_molar_mass_unit
molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing...
Definition: cv.hpp:13968
MS_Andi_CHROM_format
MS_Andi_CHROM_format
Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
Definition: cv.hpp:7779
UNIMOD_Hex_3_HexNAc_6_Sulf_1_
UNIMOD_Hex_3_HexNAc_6_Sulf_1_
Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
Definition: cv.hpp:12636
MS_source_temperature
MS_source_temperature
source temperature: The temperature of the source of a mass spectrometer.
Definition: cv.hpp:6570
MS_Q_Tof_Premier
MS_Q_Tof_Premier
Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
Definition: cv.hpp:2568
UNIMOD_ESP_2H_10_
UNIMOD_ESP_2H_10_
ESP:2H(10): ESP-Tag heavy d10.
Definition: cv.hpp:9546
MS_Paragon_total_protscore
MS_Paragon_total_protscore
Paragon:total protscore: The Paragon result 'Total ProtScore'.
Definition: cv.hpp:3954
UNIMOD_Hex_2_HexNAc_2_dHex_1_
UNIMOD_Hex_2_HexNAc_2_dHex_1_
Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
Definition: cv.hpp:9699
UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_
UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_
Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
Definition: cv.hpp:12786
MS_conversion_dynode_photomultiplier
MS_conversion_dynode_photomultiplier
conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce ele...
Definition: cv.hpp:648
UO_solid_angle_unit
UO_solid_angle_unit
solid angle unit: A unit which is a standard measure of the angle formed by three or more planes inte...
Definition: cv.hpp:14175
MS_small_molecule_analysis_software
MS_small_molecule_analysis_software
small molecule analysis software: Software for the analysis of small molecules.
Definition: cv.hpp:9057
MS_TMT_reagent_127
MS_TMT_reagent_127
TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
Definition: cv.hpp:8304
MS_MS_GF_Energy
MS_MS_GF_Energy
MS-GF:Energy: MS-GF energy score.
Definition: cv.hpp:6603
MS_Comet_deltacnstar
MS_Comet_deltacnstar
Comet:deltacnstar: The Comet result 'DeltaCnStar'.
Definition: cv.hpp:7209
MS_cleavage_agent_name
MS_cleavage_agent_name
cleavage agent name: The name of the cleavage agent.
Definition: cv.hpp:3621
MS_PIA_XML_format
MS_PIA_XML_format
PIA XML format: A compilation of search engine results in the PIA XML format.
Definition: cv.hpp:7614
UNIMOD_Carboxymethyl
UNIMOD_Carboxymethyl
Carboxymethyl: Iodoacetic acid derivative.
Definition: cv.hpp:9387
UO_cubic_decimeter
UO_cubic_decimeter
cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3],...
Definition: cv.hpp:14103
UNIMOD_dHex_3_Hex_3_HexNAc_3_
UNIMOD_dHex_3_Hex_3_HexNAc_3_
dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
Definition: cv.hpp:13218
UNIMOD_CoenzymeA
UNIMOD_CoenzymeA
CoenzymeA: Cysteine modified Coenzyme A.
Definition: cv.hpp:9858
MS_param__b_ion_H2O_DEPRECATED
MS_param__b_ion_H2O_DEPRECATED
param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
Definition: cv.hpp:3909
MS_nativeID_format__combined_spectra
MS_nativeID_format__combined_spectra
nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes ho...
Definition: cv.hpp:8397
MS_no_special_processing
MS_no_special_processing
no special processing: No special processing performed.
Definition: cv.hpp:7935
UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_
UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_
dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:12576
MS_reporter_ion_normalized_value
MS_reporter_ion_normalized_value
reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).
Definition: cv.hpp:5985
UNIMOD_Ethylphosphate
UNIMOD_Ethylphosphate
Ethylphosphate: O-Ethylphosphorylation.
Definition: cv.hpp:10845
MS_desorption_ionization_on_silicon
MS_desorption_ionization_on_silicon
desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample de...
Definition: cv.hpp:1734
UO_hertz
UO_hertz
hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
Definition: cv.hpp:14121
MS_DTASelect
MS_DTASelect
DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highli...
Definition: cv.hpp:8247
MS_Voyager_DE_STR
MS_Voyager_DE_STR
Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
Definition: cv.hpp:978
MS_spectral_count_protein_level_quantitation
MS_spectral_count_protein_level_quantitation
spectral count protein level quantitation: Spectral count protein level quantitation.
Definition: cv.hpp:6492
MS_Amanda_AmandaScore
MS_Amanda_AmandaScore
Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
Definition: cv.hpp:7407
MS_ProteinExtractor_ProteinSolverWeighting
MS_ProteinExtractor_ProteinSolverWeighting
ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of m...
Definition: cv.hpp:4725
UNIMOD_Gln__Arg
UNIMOD_Gln__Arg
Gln->Arg: Gln->Arg substitution.
Definition: cv.hpp:10656
UNIMOD_BisANS
UNIMOD_BisANS
BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
Definition: cv.hpp:10344
MS_Xevo_G2_XS_Tof
MS_Xevo_G2_XS_Tof
Xevo G2 XS Tof: Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectro...
Definition: cv.hpp:8607
MS_Pegasus_4D
MS_Pegasus_4D
Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
Definition: cv.hpp:6258
MS_negative_ion_OBSOLETE
MS_negative_ion_OBSOLETE
negative ion: An atomic or molecular species having a net negative electric charge.
Definition: cv.hpp:1683
MS_Progenesis_QI_normalised_abundance
MS_Progenesis_QI_normalised_abundance
Progenesis QI normalised abundance: The normalised abundance produced by Progenesis QI LC-MS.
Definition: cv.hpp:9084
UNIMOD_Xlink_EGS_226_
UNIMOD_Xlink_EGS_226_
Xlink:EGS[226]: Intact EGS cross-linker.
Definition: cv.hpp:13545
MS_Reprocessed_subset_dataset
MS_Reprocessed_subset_dataset
Reprocessed subset dataset: A subset of the raw files included in the original dataset (or group of o...
Definition: cv.hpp:9009
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc —OR— dHex(2) Hex(3) HexNAc(3) NeuGc.
Definition: cv.hpp:12588
MS_IRMS_OBSOLETE
MS_IRMS_OBSOLETE
IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different iso...
Definition: cv.hpp:1275
MS_TOPP_SpecLibSearcher
MS_TOPP_SpecLibSearcher
TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral ...
Definition: cv.hpp:7008
MS_Bruker_Daltonics_EVOQ_series
MS_Bruker_Daltonics_EVOQ_series
Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
Definition: cv.hpp:7332
MS_no_compression
MS_no_compression
no compression: No Compression.
Definition: cv.hpp:2337
UNIMOD_NHS_LC_Biotin
UNIMOD_NHS_LC_Biotin
NHS-LC-Biotin: NHS-LC-Biotin.
Definition: cv.hpp:9549
UNIMOD_Phe__Glu
UNIMOD_Phe__Glu
Phe->Glu: Phe->Glu substitution.
Definition: cv.hpp:11532
MS_SIM_chromatogram
MS_SIM_chromatogram
SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of...
Definition: cv.hpp:4815
MS_protein_attribute
MS_protein_attribute
protein attribute: An nonphysical attribute describing a specific protein.
Definition: cv.hpp:3354
MS_ProteinExtractor_MascotPeptideScoreThreshold
MS_ProteinExtractor_MascotPeptideScoreThreshold
ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4692
UO_mass_density_unit
UO_mass_density_unit
mass density unit: A density unit which is a standard measure of the mass of a substance in a given v...
Definition: cv.hpp:13959
MS_MALDI_Solutions
MS_MALDI_Solutions
MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:5073
UNIMOD_His__Thr
UNIMOD_His__Thr
His->Thr: His->Thr substitution.
Definition: cv.hpp:11619
MS_TSQ_9000
MS_TSQ_9000
TSQ 9000: Thermo Scientific TSQ 9000 Triple Quadrupole MS.
Definition: cv.hpp:9051
MS_ProteomeDiscoverer_Highest_Charge_State
MS_ProteomeDiscoverer_Highest_Charge_State
ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
Definition: cv.hpp:5340
UNIMOD_dHex_1_Hex_3_HexNAc_4_
UNIMOD_dHex_1_Hex_3_HexNAc_4_
dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
Definition: cv.hpp:9909
MS_ionization_type
MS_ionization_type
ionization type: The method by which gas phase ions are generated from the sample.
Definition: cv.hpp:285
UNIMOD_Phe__Asp
UNIMOD_Phe__Asp
Phe->Asp: Phe->Asp substitution.
Definition: cv.hpp:11529
MS_chromatogram_attribute
MS_chromatogram_attribute
chromatogram attribute: Chromatogram properties that are associated with a value.
Definition: cv.hpp:3120
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_
dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc —OR— Hex(3) HexNAc(2) NeuAc.
Definition: cv.hpp:13032
MS_frag__z_1_ion
MS_frag__z_1_ion
frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
Definition: cv.hpp:4509
MS_PIA_FDRScore_calculated
MS_PIA_FDRScore_calculated
PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
Definition: cv.hpp:7620
MS_TOPP_IDPosteriorErrorProbability
MS_TOPP_IDPosteriorErrorProbability
TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
Definition: cv.hpp:7023
MS_ProteomeDiscoverer_Xtract_Highest_Charge
MS_ProteomeDiscoverer_Xtract_Highest_Charge
ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution ...
Definition: cv.hpp:5313
MS_6310_Ion_Trap_LC_MS
MS_6310_Ion_Trap_LC_MS
6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:2016
MS_2000_QTRAP
MS_2000_QTRAP
2000 QTRAP: SCIEX 2000 QTRAP.
Definition: cv.hpp:8184
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
Definition: cv.hpp:5643
MS_sequence_subsumable_protein
MS_sequence_subsumable_protein
sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are di...
Definition: cv.hpp:5208
MS_pI
MS_pI
pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an elect...
Definition: cv.hpp:3285
MS_Ascore
MS_Ascore
Ascore: A-score for PTM site location at the PSM-level.
Definition: cv.hpp:6384
UO_information_unit
UO_information_unit
information unit: A unit which is a standard measure of the amount of information.
Definition: cv.hpp:14490
MS_Single_Stage_Mass_Spectrometry
MS_Single_Stage_Mass_Spectrometry
Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment ...
Definition: cv.hpp:2361
MS_TripleTOF_5600
MS_TripleTOF_5600
TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition: cv.hpp:3504
MS_dpControl
MS_dpControl
dpControl: Bruker software for data acquisition.
Definition: cv.hpp:2829
MS_analyzer_scan_offset
MS_analyzer_scan_offset
analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan....
Definition: cv.hpp:3102
UO_kilogram_per_liter
UO_kilogram_per_liter
kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by t...
Definition: cv.hpp:14319
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be consid...
Definition: cv.hpp:5331
MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE
MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE
Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that und...
Definition: cv.hpp:1536
UO_micrometer
UO_micrometer
micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
Definition: cv.hpp:13854
MS_Xevo_TQ_S
MS_Xevo_TQ_S
Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
Definition: cv.hpp:5790
UO_specific_volume_unit
UO_specific_volume_unit
specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (...
Definition: cv.hpp:13980
MS_resolution_type_OBSOLETE
MS_resolution_type_OBSOLETE
resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either...
Definition: cv.hpp:300
pwiz::cv::CVTermInfo::def
std::string def
Definition: cv.hpp:14948
MS_emission_chromatogram
MS_emission_chromatogram
emission chromatogram: The measurement of light emitted by the sample as a function of the retention ...
Definition: cv.hpp:3138
MS_TOPP_IDMapper
MS_TOPP_IDMapper
TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
Definition: cv.hpp:7020
MS_isolation_window_upper_limit_OBSOLETE
MS_isolation_window_upper_limit_OBSOLETE
isolation window upper limit: The highest m/z being isolated in an isolation window.
Definition: cv.hpp:3066
MS_vacuum_drying_MALDI_sample_preparation
MS_vacuum_drying_MALDI_sample_preparation
vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method...
Definition: cv.hpp:6390
MS_Mascot_Integra
MS_Mascot_Integra
Mascot Integra: Mascot Integra.
Definition: cv.hpp:4872
MS_interchannel_delay
MS_interchannel_delay
interchannel delay: The duration of intervals between scanning, during which the instrument configura...
Definition: cv.hpp:3342
UNIMOD_FAD
UNIMOD_FAD
FAD: Flavin adenine dinucleotide.
Definition: cv.hpp:9492
MS_protein_group_level_result_list_statistic
MS_protein_group_level_result_list_statistic
protein group-level result list statistic: Attrbiute of an entire list of protein groups.
Definition: cv.hpp:8574
MS_XIC_area
MS_XIC_area
XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition: cv.hpp:5988
UNIMOD_Hex_1_HexNAc_3_
UNIMOD_Hex_1_HexNAc_3_
Hex(1)HexNAc(3): Hex HexNAc(3).
Definition: cv.hpp:12822
UNIMOD_Tyr__Phe
UNIMOD_Tyr__Phe
Tyr->Phe: Tyr->Phe substitution.
Definition: cv.hpp:10788
MS_iTRAQ_reagent_113
MS_iTRAQ_reagent_113
iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
Definition: cv.hpp:8322
UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
Definition: cv.hpp:12564
MS_MALDI_Solutions_Microbial_Identification
MS_MALDI_Solutions_Microbial_Identification
MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition,...
Definition: cv.hpp:6048
UO_colony_forming_unit
UO_colony_forming_unit
colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
Definition: cv.hpp:14427
MS_spectral_count_proteingroup_level_quantitation
MS_spectral_count_proteingroup_level_quantitation
spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
Definition: cv.hpp:6495
UNIMOD_Glu__Lys
UNIMOD_Glu__Lys
Glu->Lys: Glu->Lys substitution.
Definition: cv.hpp:10467
UNIMOD_VIEVYQEQTGG
UNIMOD_VIEVYQEQTGG
VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
Definition: cv.hpp:11139
MS_instrument_serial_number
MS_instrument_serial_number
instrument serial number: Serial Number of the instrument.
Definition: cv.hpp:2193
UO_dyne_per_cm
UO_dyne_per_cm
dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
Definition: cv.hpp:14562
UNIMOD_Amidino
UNIMOD_Amidino
Amidino: Amidino.
Definition: cv.hpp:10224
UNIMOD_Val__Ser
UNIMOD_Val__Ser
Val->Ser: Val->Ser substitution.
Definition: cv.hpp:11913
MS_fragmentation_score
MS_fragmentation_score
fragmentation score: The fragmentation confidence score.
Definition: cv.hpp:9093
MS_inverse_reduced_ion_mobility
MS_inverse_reduced_ion_mobility
inverse reduced ion mobility: Ion mobility measurement for an ion or spectrum of ions as measured in ...
Definition: cv.hpp:8868
MS_64_bit_float
MS_64_bit_float
64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2175
MS_normalized_protein_value
MS_normalized_protein_value
normalized protein value: Normalized protein value.
Definition: cv.hpp:5970
MS_protein_group_passes_threshold
MS_protein_group_passes_threshold
protein group passes threshold: A Boolean attribute to determine whether the protein group has passed...
Definition: cv.hpp:7695
UNIMOD_LG_Hlactam_R
UNIMOD_LG_Hlactam_R
LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
Definition: cv.hpp:10323
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_
dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc —OR— Hex(3) HexNAc(2) dHex NeuAc —OR— ...
Definition: cv.hpp:13110
MS_TrypChymo
MS_TrypChymo
TrypChymo: Cleavage agent TrypChymo.
Definition: cv.hpp:4347
MS_quantification_data_processing
MS_quantification_data_processing
quantification data processing: Terms used to describe types of quantification data processing.
Definition: cv.hpp:5997
MS_second_column_elution_time
MS_second_column_elution_time
second column elution time: The time of elution from the second chromatographic column in the chromat...
Definition: cv.hpp:6699
MS_4000_QTRAP_OBSOLETE
MS_4000_QTRAP_OBSOLETE
4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
Definition: cv.hpp:3312
UNIMOD_Xle__Val
UNIMOD_Xle__Val
Xle->Val: Leu/Ile->Val substitution.
Definition: cv.hpp:10572
MS_Proline
MS_Proline
Proline: The Proline software suite for mass spectrometry based proteomics.
Definition: cv.hpp:9366
MS_protein_group_or_subset_relationship
MS_protein_group_or_subset_relationship
protein group or subset relationship: Protein group or subset relationships.
Definition: cv.hpp:3762
UO_perch
UO_perch
perch: An area unit which is equal to an area of 25.292,852,64 square meters, or 1 square rod.
Definition: cv.hpp:14862
UNIMOD_Asn__Lys
UNIMOD_Asn__Lys
Asn->Lys: Asn->Lys substitution.
Definition: cv.hpp:10608
MS_de_facto_standard
MS_de_facto_standard
de facto standard: A practice or product that has become a standard not because it has been approved ...
Definition: cv.hpp:3402
UNIMOD_Homocysteic_acid
UNIMOD_Homocysteic_acid
Homocysteic_acid: Methionine oxidation to homocysteic acid.
Definition: cv.hpp:12267
MS_distinct_peptide_level_q_value
MS_distinct_peptide_level_q_value
distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identi...
Definition: cv.hpp:6018
MS_Scaffold_Peptide_Probability
MS_Scaffold_Peptide_Probability
Scaffold:Peptide Probability: Scaffold peptide probability score.
Definition: cv.hpp:5103
UNIMOD_Tyr__Met
UNIMOD_Tyr__Met
Tyr->Met: Tyr->Met substitution.
Definition: cv.hpp:11976
UNIMOD_EEEDVIEVYQEQTGG
UNIMOD_EEEDVIEVYQEQTGG
EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
Definition: cv.hpp:12321
UNIMOD_dHex_1_Hex_3_
UNIMOD_dHex_1_Hex_3_
dHex(1)Hex(3): Hex3dHex1.
Definition: cv.hpp:12243
UNIMOD_Phenylisocyanate
UNIMOD_Phenylisocyanate
Phenylisocyanate: Phenyl isocyanate.
Definition: cv.hpp:10146
UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_
dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
Definition: cv.hpp:12930
MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE
MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE
decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabido...
Definition: cv.hpp:4284
MS_database_IPI_mouse
MS_database_IPI_mouse
database IPI_mouse: International Protein Index database for Mus musculus sequences.
Definition: cv.hpp:4257
MS_database_EST
MS_database_EST
database EST: Expressed sequence tag nucleotide sequence database.
Definition: cv.hpp:3993
MS_Compass_for_HCT_esquire
MS_Compass_for_HCT_esquire
Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
Definition: cv.hpp:2808
MS_LC_MS_feature_volume
MS_LC_MS_feature_volume
LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
Definition: cv.hpp:5937
UNIMOD_Cys__Tyr
UNIMOD_Cys__Tyr
Cys->Tyr: Cys->Tyr substitution.
Definition: cv.hpp:10428
MS_SILAC_light_reagent
MS_SILAC_light_reagent
SILAC light reagent: The name of the sample labelled with the light SILAC label.
Definition: cv.hpp:8295
MS_6110_Quadrupole_LC_MS
MS_6110_Quadrupole_LC_MS
6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:2001
UNIMOD_dHex_1_Hex_8_HexNAc_2_
UNIMOD_dHex_1_Hex_8_HexNAc_2_
dHex(1)Hex(8)HexNAc(2): DHex Hex(8) HexNAc(2).
Definition: cv.hpp:13731
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_
dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
Definition: cv.hpp:12840
UNIMOD_cysTMT6plex
UNIMOD_cysTMT6plex
cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
Definition: cv.hpp:11250
UNIMOD_Hex_5_HexNAc_4_Sulf_1_
UNIMOD_Hex_5_HexNAc_4_Sulf_1_
Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
Definition: cv.hpp:12594
MS_search_engine_input_parameter
MS_search_engine_input_parameter
search engine input parameter: Search engine input parameter.
Definition: cv.hpp:6729
MS_liquid_secondary_ionization
MS_liquid_secondary_ionization
liquid secondary ionization: The ionization of any species by the interaction of a focused beam of io...
Definition: cv.hpp:1755
MS_mass_spectrograph_obsolete_OBSOLETE
MS_mass_spectrograph_obsolete_OBSOLETE
mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-ch...
Definition: cv.hpp:1437
MS_ratio_calculation_method
MS_ratio_calculation_method
ratio calculation method: Method used to calculate the ratio.
Definition: cv.hpp:6648
MS_measurement_method
MS_measurement_method
measurement method: An attribute of resolution when recording the detector response in absence of the...
Definition: cv.hpp:2442
MS_data_processing
MS_data_processing
data processing (data transformation): Terms used to describe types of data processing.
Definition: cv.hpp:1947
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_
Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
Definition: cv.hpp:13278
UNIMOD_Label_13C_1_2H_3__Oxidation
UNIMOD_Label_13C_1_2H_3__Oxidation
Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
Definition: cv.hpp:11043
UNIMOD_Hex_6_HexNAc_4_
UNIMOD_Hex_6_HexNAc_4_
Hex(6)HexNAc(4): Hex(6) HexNAc(4).
Definition: cv.hpp:13380
UNIMOD_Xle__Trp
UNIMOD_Xle__Trp
Xle->Trp: Leu/Ile->Trp substitution.
Definition: cv.hpp:10566
MS_SRM_chromatogram
MS_SRM_chromatogram
SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an arr...
Definition: cv.hpp:4821
MS_fragment_neutral_loss
MS_fragment_neutral_loss
fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
Definition: cv.hpp:4977
MS_scan_window_upper_limit
MS_scan_window_upper_limit
scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:2106
MS_PeptideShaker_protein_group_score
MS_PeptideShaker_protein_group_score
PeptideShaker protein group score: The probability based PeptideShaker protein group score.
Definition: cv.hpp:7860
MS_Search_engine_output_file_URI
MS_Search_engine_output_file_URI
Search engine output file URI: URI of one search engine output file associated to one PX submission.
Definition: cv.hpp:8970
UNIMOD_Hex_4_HexNAc_4_Sulf_2_
UNIMOD_Hex_4_HexNAc_4_Sulf_2_
Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
Definition: cv.hpp:13245
UNIMOD_Benzoyl
UNIMOD_Benzoyl
Benzoyl: Labeling reagent light form (N-term & K).
Definition: cv.hpp:9636
MS_sliding_average_smoothing
MS_sliding_average_smoothing
sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each poin...
Definition: cv.hpp:3042
MS_Compass_OpenAccess
MS_Compass_OpenAccess
Compass OpenAccess: Bruker compass OpenAccess software.
Definition: cv.hpp:2814
UO_fraction
UO_fraction
fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denomin...
Definition: cv.hpp:14370
MS_chromosome_strand
MS_chromosome_strand
chromosome strand: The strand (+ or -) to which the peptide has been mapped.
Definition: cv.hpp:8370
MS_Scaffold__Minimum_Peptide_Count
MS_Scaffold__Minimum_Peptide_Count
Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
Definition: cv.hpp:5124
MS_ATAQS
MS_ATAQS
ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the result...
Definition: cv.hpp:3483
UNIMOD_HexNAc_1_dHex_2_
UNIMOD_HexNAc_1_dHex_2_
HexNAc(1)dHex(2): HexNAc1dHex2.
Definition: cv.hpp:9660
MS_PepFinder
MS_PepFinder
PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
Definition: cv.hpp:8022
UNIMOD_Bodipy
UNIMOD_Bodipy
Bodipy: Bodipy modifications onto cysteine.
Definition: cv.hpp:11037
MS_sample_pre_fractionation
MS_sample_pre_fractionation
sample pre-fractionation: Sample pre-fractionation performed.
Definition: cv.hpp:7929
MS_spectrum_identifier_nativeID_format
MS_spectrum_identifier_nativeID_format
spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
Definition: cv.hpp:3003
UNIMOD_Label_15N_3_
UNIMOD_Label_15N_3_
Label:15N(3): 15N(3).
Definition: cv.hpp:11274
UNIMOD_Glu__Val
UNIMOD_Glu__Val
Glu->Val: Glu->Val substitution.
Definition: cv.hpp:10473
MS_contact_fax_number
MS_contact_fax_number
contact fax number: Fax number for the contact person or organization.
Definition: cv.hpp:5682
UNIMOD_Glu__Ala
UNIMOD_Glu__Ala
Glu->Ala: Glu->Ala substitution.
Definition: cv.hpp:10458
UNIMOD_Hex_2_HexNAc_1_NeuGc_3_
UNIMOD_Hex_2_HexNAc_1_NeuGc_3_
Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
Definition: cv.hpp:13170
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
Definition: cv.hpp:13035
UNIMOD_Dicarbamidomethyl
UNIMOD_Dicarbamidomethyl
Dicarbamidomethyl: Double Carbamidomethylation.
Definition: cv.hpp:12090
MS_multichannel_plate
MS_multichannel_plate
multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array o...
Definition: cv.hpp:672
UNIMOD_Succinyl
UNIMOD_Succinyl
Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
Definition: cv.hpp:9531
MS_residual_gas_analyzer_OBSOLETE
MS_residual_gas_analyzer_OBSOLETE
residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in ...
Definition: cv.hpp:1359
UNIMOD_AHA_SS
UNIMOD_AHA_SS
AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
Definition: cv.hpp:12000
MS_iTRAQ_reagent_121
MS_iTRAQ_reagent_121
iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
Definition: cv.hpp:8343
MS_SILAC_heavy_reagent
MS_SILAC_heavy_reagent
SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
Definition: cv.hpp:8289
UNIMOD_Asn__Gly
UNIMOD_Asn__Gly
Asn->Gly: Asn->Gly substitution.
Definition: cv.hpp:11730
MS_staphylococcal_protease
MS_staphylococcal_protease
staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3....
Definition: cv.hpp:6168
UNIMOD_Propargylamine
UNIMOD_Propargylamine
Propargylamine: Propargylamine.
Definition: cv.hpp:11211
MS_TSQ_Altis
MS_TSQ_Altis
TSQ Altis: Thermo Scientific TSQ Altis Triple Quadrupole MS.
Definition: cv.hpp:9045
UNIMOD_Hex_4_HexNAc_4_Sulf_1_
UNIMOD_Hex_4_HexNAc_4_Sulf_1_
Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:12522
UNIMOD_Met__Tyr
UNIMOD_Met__Tyr
Met->Tyr: Met->Tyr substitution.
Definition: cv.hpp:11715
UNIMOD_GG
UNIMOD_GG
GG: Ubiquitinylation residue.
Definition: cv.hpp:9600
MS_ion_kinetic_energy_spectrometry_OBSOLETE
MS_ion_kinetic_energy_spectrometry_OBSOLETE
ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according ...
Definition: cv.hpp:1254
UNIMOD_Sulfo_NHS_LC_LC_Biotin
UNIMOD_Sulfo_NHS_LC_LC_Biotin
Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
Definition: cv.hpp:10353
MS_nanoACQUITY_UPLC
MS_nanoACQUITY_UPLC
nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
Definition: cv.hpp:5712
UNIMOD_HCysThiolactone
UNIMOD_HCysThiolactone
HCysThiolactone: N-Homocysteine thiolactone.
Definition: cv.hpp:12051
UO_yotta
UO_yotta
yotta: A prefix in the metric system denoting a factor of ten to the power of 24.
Definition: cv.hpp:14655
UO_angular_acceleration_unit
UO_angular_acceleration_unit
angular acceleration unit: A unit which is a standard measure of the rate of change of angular veloci...
Definition: cv.hpp:13953
UNIMOD_PEO_Iodoacetyl_LC_Biotin
UNIMOD_PEO_Iodoacetyl_LC_Biotin
PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
Definition: cv.hpp:9414
MS_peptide_group_label
MS_peptide_group_label
peptide group label: An arbitrary string label used to mark a set of peptides that belong together in...
Definition: cv.hpp:3384
MS_LCQ_Classic
MS_LCQ_Classic
LCQ Classic: ThermoFinnigan LCQ Classic MS.
Definition: cv.hpp:870
UNIMOD_Succinyl_13C_4_
UNIMOD_Succinyl_13C_4_
Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
Definition: cv.hpp:9537
MS_Xevo_Q_Tof
MS_Xevo_Q_Tof
Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
Definition: cv.hpp:5769
MS_LCQ_Fleet
MS_LCQ_Fleet
LCQ Fleet: LCQ Fleet.
Definition: cv.hpp:2346
MS_PASSEL_transition_group_browser_URI
MS_PASSEL_transition_group_browser_URI
PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas...
Definition: cv.hpp:6537
MS_IsoProbe
MS_IsoProbe
IsoProbe: Waters IsoProbe MS.
Definition: cv.hpp:861
MS_protein_level_identification_attribute
MS_protein_level_identification_attribute
protein-level identification attribute: Protein level information.
Definition: cv.hpp:3714
MS_adduct_ion_isotope
MS_adduct_ion_isotope
adduct ion isotope: Isotope of the matrix molecule M of an adduct formation.
Definition: cv.hpp:8853
MS_SpectrumMill_directories
MS_SpectrumMill_directories
SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format...
Definition: cv.hpp:5100
MS_database_filtering
MS_database_filtering
database filtering: Was there filtering used on the database.
Definition: cv.hpp:3555
UNIMOD_Dioxidation
UNIMOD_Dioxidation
Dioxidation: Dihydroxy.
Definition: cv.hpp:10185
UNIMOD_HexNAc_2_dHex_2_
UNIMOD_HexNAc_2_dHex_2_
HexNAc(2)dHex(2): HexNAc2dHex2.
Definition: cv.hpp:9675
MS_TOPP_MascotAdapter
MS_TOPP_MascotAdapter
TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
Definition: cv.hpp:6993
MS_database_type
MS_database_type
database type: Database containing amino acid or nucleic acid sequences.
Definition: cv.hpp:3552
MS_TopPIC_proteoform_level_cutoff_type
MS_TopPIC_proteoform_level_cutoff_type
TopPIC:proteoform-level cutoff type: Proteoform-level cutoff type for filtering identified proteoform...
Definition: cv.hpp:9186
MS_study_variable_variation_function
MS_study_variable_variation_function
study variable variation function: Function used to calculate the study variable quantification varia...
Definition: cv.hpp:9075
UNIMOD_ICAT_C_13C_9_
UNIMOD_ICAT_C_13C_9_
ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
Definition: cv.hpp:9567
MS_product_ion_drift_time_OBSOLETE
MS_product_ion_drift_time_OBSOLETE
product ion drift time: The ion drift time of an MS2 product ion.
Definition: cv.hpp:6324
UO_drachm
UO_drachm
drachm: An imperial mass unit which is equivalent to 1.771,845,195,3125 grams, or 1/256 of 1 pound.
Definition: cv.hpp:14889
MS_MBMS_OBSOLETE
MS_MBMS_OBSOLETE
MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introdu...
Definition: cv.hpp:1074
MS_source_sprayer_model
MS_source_sprayer_model
source sprayer model: The source sprayer model.
Definition: cv.hpp:6228
UNIMOD_ICAT_G
UNIMOD_ICAT_G
ICAT-G: Gygi ICAT(TM) d0.
Definition: cv.hpp:9393
MS_SEQUEST
MS_SEQUEST
SEQUEST: The name of the SEQUEST search engine.
Definition: cv.hpp:4053
UNIMOD_Ala__Pro
UNIMOD_Ala__Pro
Ala->Pro: Ala->Pro substitution.
Definition: cv.hpp:10407
MS_protein_group_level_FDRScore
MS_protein_group_level_FDRScore
protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
Definition: cv.hpp:7572
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whet...
Definition: cv.hpp:5418
MS_Phenyx_Turbo_ErrorTol
MS_Phenyx_Turbo_ErrorTol
Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of ...
Definition: cv.hpp:4548
MS_SEQUEST_out_file_format
MS_SEQUEST_out_file_format
SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
Definition: cv.hpp:4035
MS_Mascot_Distiller
MS_Mascot_Distiller
Mascot Distiller: Mascot Distiller.
Definition: cv.hpp:4869
MS_charge_induced_fragmentation_OBSOLETE
MS_charge_induced_fragmentation_OBSOLETE
charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjac...
Definition: cv.hpp:1812
MS_MS_MS_OBSOLETE
MS_MS_MS_OBSOLETE
MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically c...
Definition: cv.hpp:1314
UO_electric_current_unit
UO_electric_current_unit
electric current unit: A unit which is a standard measure of the flow of electric charge.
Definition: cv.hpp:13815
MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE
MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE
ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modific...
Definition: cv.hpp:7440
MS_sample_batch
MS_sample_batch
sample batch: Sample batch lot identifier.
Definition: cv.hpp:435
UO_counts_per_minute
UO_counts_per_minute
counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissio...
Definition: cv.hpp:14244
MS_data_file_content
MS_data_file_content
data file content: Describes the data content on the file.
Definition: cv.hpp:2178
UO_picometer
UO_picometer
picometer: A length unit which is equal to 10^[-12] m.
Definition: cv.hpp:13863
MS_Expect_value
MS_Expect_value
Expect value: Result of quality estimation: Expect value.
Definition: cv.hpp:4011
UO_time_unit
UO_time_unit
time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
Definition: cv.hpp:13812
PEFF_PEFF_CV_term
PEFF_PEFF_CV_term
PEFF CV term: PSI Extended FASTA Format Controlled Vocabulary term.
Definition: cv.hpp:120
MS_H_Score
MS_H_Score
H-Score: H-Score for peptide phosphorylation site location.
Definition: cv.hpp:6387
MS_DiLeu_reagent
MS_DiLeu_reagent
DiLeu reagent: Dimethyl leucine labeling reagent.
Definition: cv.hpp:8754
MS_report_only_spectra_assigned_to_identified_proteins
MS_report_only_spectra_assigned_to_identified_proteins
report only spectra assigned to identified proteins: Flag indicating to report only the spectra assig...
Definition: cv.hpp:5121
UNIMOD_Arg__Trp
UNIMOD_Arg__Trp
Arg->Trp: Arg->Trp substitution.
Definition: cv.hpp:10665
MS_small_molecule_modification_attribute
MS_small_molecule_modification_attribute
small molecule modification attribute: Attribute describing a small molecule modification.
Definition: cv.hpp:6804
MS_ProteomeDiscoverer_Max_Precursor_Mass
MS_ProteomeDiscoverer_Max_Precursor_Mass
ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
Definition: cv.hpp:5235
UNIMOD_Label_18O_2_
UNIMOD_Label_18O_2_
Label:18O(2): O18 label at both C-terminal oxygens.
Definition: cv.hpp:9744
Export.hpp
MS_precursor_ion_scan_OBSOLETE
MS_precursor_ion_scan_OBSOLETE
precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
Definition: cv.hpp:618
UO_pi
UO_pi
pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3....
Definition: cv.hpp:14361
MS_distinct_peptide_level_FDRScore
MS_distinct_peptide_level_FDRScore
distinct peptide-level FDRScore: MzidLibrary FDRScore for distinct peptides once redundant identifica...
Definition: cv.hpp:7530
MS_micrOTOF_Q_II
MS_micrOTOF_Q_II
micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2781
MS_suspension
MS_suspension
suspension: State if the sample is in suspension form.
Definition: cv.hpp:432
UNIMOD_Hex_7_HexNAc_2_Phos_1_
UNIMOD_Hex_7_HexNAc_2_Phos_1_
Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
Definition: cv.hpp:12555
UNIMOD_AHA_Alkyne
UNIMOD_AHA_Alkyne
AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
Definition: cv.hpp:11280
MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE
MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE
ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modific...
Definition: cv.hpp:6687
MS_ALEX123
MS_ALEX123
ALEX123: Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (M...
Definition: cv.hpp:9354
MS_programmer
MS_programmer
programmer: Programmer role.
Definition: cv.hpp:4224
UNIMOD_Brij58
UNIMOD_Brij58
Brij58: Brij 58 synthetic polymer terminus.
Definition: cv.hpp:13461
UO_nanometer
UO_nanometer
nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
Definition: cv.hpp:13857
UNIMOD_Cys__ethylaminoAla
UNIMOD_Cys__ethylaminoAla
Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of e...
Definition: cv.hpp:11160
MS_peptide_spectrum_match_scoring_algorithm
MS_peptide_spectrum_match_scoring_algorithm
peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a ...
Definition: cv.hpp:6306
UNIMOD_Asn__His
UNIMOD_Asn__His
Asn->His: Asn->His substitution.
Definition: cv.hpp:10614
MS_SCION_SQ
MS_SCION_SQ
SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
Definition: cv.hpp:7335
MS_MZmine
MS_MZmine
MZmine: A framework for differential analysis of mass spectrometry data.
Definition: cv.hpp:7476
UNIMOD_Asp__Ala
UNIMOD_Asp__Ala
Asp->Ala: Asp->Ala substitution.
Definition: cv.hpp:10437
MS_MSPathFinder
MS_MSPathFinder
MSPathFinder: PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in f...
Definition: cv.hpp:8580
UNIMOD_Bromobimane
UNIMOD_Bromobimane
Bromobimane: Monobromobimane derivative.
Definition: cv.hpp:9900
MS_MS_GF_QValue
MS_MS_GF_QValue
MS-GF:QValue: MS-GF Q-value.
Definition: cv.hpp:6612
MS_combined_pmf___ms_ms_search
MS_combined_pmf___ms_ms_search
combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (a...
Definition: cv.hpp:5154
UNIMOD_Hex_1_HexNAc_2_NeuGc_1_
UNIMOD_Hex_1_HexNAc_2_NeuGc_1_
Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
Definition: cv.hpp:12879
UNIMOD_Trp__Gly
UNIMOD_Trp__Gly
Trp->Gly: Trp->Gly substitution.
Definition: cv.hpp:10782
MS_peptide_H_Score
MS_peptide_H_Score
peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
Definition: cv.hpp:8109
UO_kibibyte
UO_kibibyte
kibibyte: An information unit which is equal to 1024 B.
Definition: cv.hpp:14532
MS_delta_m_z
MS_delta_m_z
delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally...
Definition: cv.hpp:6348
MS_instrument_vendor
MS_instrument_vendor
instrument vendor: Instrument vendor role.
Definition: cv.hpp:4227
MS_Proteome_Discoverer
MS_Proteome_Discoverer
Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
Definition: cv.hpp:2622
MS_protein_group_level_e_value
MS_protein_group_level_e_value
protein group-level e-value: Estimation of the e-value for protein groups.
Definition: cv.hpp:7566
UNIMOD_dHex_1_Hex_6_
UNIMOD_dHex_1_Hex_6_
dHex(1)Hex(6): Hex6dHex1.
Definition: cv.hpp:12252
UO_power_unit
UO_power_unit
power unit: A unit which is a standard measure power or the rate of doing work.
Definition: cv.hpp:14142
MS_marginally_distinguished_protein
MS_marginally_distinguished_protein
marginally distinguished protein: Assigned to a non-leading protein that has some independent evidenc...
Definition: cv.hpp:7677
MS_SQID
MS_SQID
SQID: Software for data analysis of peptides and proteins.
Definition: cv.hpp:6072
MS_internal_peptide_reference_used
MS_internal_peptide_reference_used
internal peptide reference used: States whether an internal peptide reference is used or not in absol...
Definition: cv.hpp:7995
MS_SEQUEST_Chromatogram
MS_SEQUEST_Chromatogram
SEQUEST:Chromatogram:
Definition: cv.hpp:3765
MS_idXML
MS_idXML
idXML: OpenMS intermediate identification format.
Definition: cv.hpp:8892
UNIMOD_Label_13C_6_15N_4__Dimethyl
UNIMOD_Label_13C_6_15N_4__Dimethyl
Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:11295
MS_Scaffold__Minimum_Protein_Probability
MS_Scaffold__Minimum_Protein_Probability
Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted...
Definition: cv.hpp:5127
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative fac...
Definition: cv.hpp:5478
MS_non_identified_ion
MS_non_identified_ion
non-identified ion: Non-identified ion.
Definition: cv.hpp:4152
MS_SYNAPT_G2_Si
MS_SYNAPT_G2_Si
SYNAPT G2-Si: Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectromete...
Definition: cv.hpp:8598
UNIMOD_iTRAQ8plex_13C_6_15N_2_
UNIMOD_iTRAQ8plex_13C_6_15N_2_
iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
Definition: cv.hpp:10860
UNIMOD_DYn_2
UNIMOD_DYn_2
DYn-2: Sulfenic Acid specific probe.
Definition: cv.hpp:13497
UNIMOD_Tyr__Ala
UNIMOD_Tyr__Ala
Tyr->Ala: Tyr->Ala substitution.
Definition: cv.hpp:11964
UNIMOD_Gln__Met
UNIMOD_Gln__Met
Gln->Met: Gln->Met substitution.
Definition: cv.hpp:11799
MS_MALDI_LTQ_XL
MS_MALDI_LTQ_XL
MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
Definition: cv.hpp:2598
UO_hour
UO_hour
hour: A time unit which is equal to 3600 seconds or 60 minutes.
Definition: cv.hpp:13899
MS_SEQUEST_sf
MS_SEQUEST_sf
SEQUEST:sf: The SEQUEST result 'Sf'.
Definition: cv.hpp:3939
MS_ion_neutral_complex_OBSOLETE
MS_ion_neutral_complex_OBSOLETE
ion/neutral complex: A particular type of transition state that lies between precursor and product io...
Definition: cv.hpp:1860
UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_
UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_
Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
Definition: cv.hpp:12798
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5556
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_
Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
Definition: cv.hpp:12330
MS_Bruker_TDF_nativeID_format
MS_Bruker_TDF_nativeID_format
Bruker TDF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativ...
Definition: cv.hpp:8877
MS_Andi_MS_format
MS_Andi_MS_format
Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
Definition: cv.hpp:7773
UO_picomole
UO_picomole
picomole: A substance unit equal to 10^[-12] mol.
Definition: cv.hpp:13929
MS_6550A_iFunnel_Q_TOF_LC_MS
MS_6550A_iFunnel_Q_TOF_LC_MS
6550A iFunnel Q-TOF LC/MS: The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatograp...
Definition: cv.hpp:8772
UNIMOD_Xlink_DST_132_
UNIMOD_Xlink_DST_132_
Xlink:DST[132]: Water quenched monolink of DST crosslinker.
Definition: cv.hpp:11337
MS_ProteoGrouper_PDH_score
MS_ProteoGrouper_PDH_score
ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetection...
Definition: cv.hpp:7152
MS_source_sprayer_manufacturer
MS_source_sprayer_manufacturer
source sprayer manufacturer: The source sprayer manufacturer.
Definition: cv.hpp:6225
MS_radial_ejection_linear_ion_trap
MS_radial_ejection_linear_ion_trap
radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the...
Definition: cv.hpp:558
UO_angular_velocity_unit
UO_angular_velocity_unit
angular velocity unit: A unit which is a standard measure of the rate of angular movement about an ax...
Definition: cv.hpp:13950
MS_quantile_normalization__peptides
MS_quantile_normalization__peptides
quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
Definition: cv.hpp:6006
UNIMOD_DNCB_hapten
UNIMOD_DNCB_hapten
DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
Definition: cv.hpp:12180
UNIMOD_Phe__Pro
UNIMOD_Phe__Pro
Phe->Pro: Phe->Pro substitution.
Definition: cv.hpp:11550
MS_APEX_value
MS_APEX_value
APEX value: The APEX value of protein abundance, produced from the APEX software.
Definition: cv.hpp:6132
UNIMOD_Asn__Cys
UNIMOD_Asn__Cys
Asn->Cys: Asn->Cys substitution.
Definition: cv.hpp:11721
MS_mzidLib_Omssa2Mzid
MS_mzidLib_Omssa2Mzid
mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
Definition: cv.hpp:7161
MS_count_of_identified_proteins
MS_count_of_identified_proteins
count of identified proteins: The number of proteins that have been identified, which must match the ...
Definition: cv.hpp:7662
MS_taxonomy__common_name
MS_taxonomy__common_name
taxonomy: common name: This term is used if a common name is specified, e.g. human....
Definition: cv.hpp:4800
MS_mathieu_stability_diagram_OBSOLETE
MS_mathieu_stability_diagram_OBSOLETE
mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that ...
Definition: cv.hpp:1509
MS_reference_ion_OBSOLETE
MS_reference_ion_OBSOLETE
reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by...
Definition: cv.hpp:1704
UNIMOD_Lys__CamCys
UNIMOD_Lys__CamCys
Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
Definition: cv.hpp:11091
UNIMOD_IMID_2H_4_
UNIMOD_IMID_2H_4_
IMID:2H(4): IMID d4.
Definition: cv.hpp:9558
MS_LTQ_Orbitrap_XL_ETD
MS_LTQ_Orbitrap_XL_ETD
LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
Definition: cv.hpp:2589
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_
dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:12510
UNIMOD_Gln__Asn
UNIMOD_Gln__Asn
Gln->Asn: Gln->Asn substitution.
Definition: cv.hpp:11802
UNIMOD_Lys__Allysine
UNIMOD_Lys__Allysine
Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
Definition: cv.hpp:10005
MS_MS_Numpress_positive_integer_compression
MS_MS_Numpress_positive_integer_compression
MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
Definition: cv.hpp:7389
MS_microflex_LT
MS_microflex_LT
microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
Definition: cv.hpp:2772
MS_mass_spectrometer_file_format
MS_mass_spectrometer_file_format
mass spectrometer file format: The format of the file being used. This could be a instrument or vendo...
Definition: cv.hpp:2289
MS_Thermo_Finnigan_instrument_model
MS_Thermo_Finnigan_instrument_model
Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
Definition: cv.hpp:714
MS_consensus_scoring
MS_consensus_scoring
consensus scoring: Consensus multiple search engine approach performed.
Definition: cv.hpp:7926
MS_SEQUEST_ShowFragmentIons
MS_SEQUEST_ShowFragmentIons
SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
Definition: cv.hpp:3603
MS_analysis_software
MS_analysis_software
analysis software: Analysis software.
Definition: cv.hpp:4767
UNIMOD_Hex_3_HexNAc_2_
UNIMOD_Hex_3_HexNAc_2_
Hex(3)HexNAc(2): Hex3HexNAc2.
Definition: cv.hpp:9702
MS_purgatory_OBSOLETE
MS_purgatory_OBSOLETE
purgatory: Terms that will likely become obsolete unless there are wails of dissent.
Definition: cv.hpp:2037
MS_SEQUEST_probability
MS_SEQUEST_probability
SEQUEST:probability: The SEQUEST result 'Probability'.
Definition: cv.hpp:3921
UO_yard
UO_yard
yard: A length unit which is equal to 0.9144 metres, or 3 feet.
Definition: cv.hpp:14835
UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_
UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_
dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
Definition: cv.hpp:12885
MS_Bruker_Agilent_YEP_nativeID_format
MS_Bruker_Agilent_YEP_nativeID_format
Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2985
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_
Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
Definition: cv.hpp:12951
UNIMOD_Withaferin
UNIMOD_Withaferin
Withaferin: Modification of cystein by withaferin.
Definition: cv.hpp:11367
UNIMOD_Biotin_Thermo_88317
UNIMOD_Biotin_Thermo_88317
Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
Definition: cv.hpp:11370
MS_FAIMS_compensation_voltage
MS_FAIMS_compensation_voltage
FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compens...
Definition: cv.hpp:5142
MS_TopPIC_thread_number
MS_TopPIC_thread_number
TopPIC:thread number: Number of threads used in TopPIC.
Definition: cv.hpp:9201
MS_sandwich_MALDI_sample_preparation
MS_sandwich_MALDI_sample_preparation
sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
Definition: cv.hpp:6402
UNIMOD_Hex_3_HexNAc_5_NeuAc_1_
UNIMOD_Hex_3_HexNAc_5_NeuAc_1_
Hex(3)HexNAc(5)NeuAc(1): Hex(3) HexNAc(5) NeuAc(1).
Definition: cv.hpp:13725
UNIMOD_Xlink_DSS_259_
UNIMOD_Xlink_DSS_259_
Xlink:DSS[259]: Tris-quenched monolink of DSS/BS3 crosslinker.
Definition: cv.hpp:13506
UNIMOD_Gln__Asp
UNIMOD_Gln__Asp
Gln->Asp: Gln->Asp substitution.
Definition: cv.hpp:11790
MS_single_ion_monitoring_OBSOLETE
MS_single_ion_monitoring_OBSOLETE
single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scann...
Definition: cv.hpp:624
MS_light_labeled_sample
MS_light_labeled_sample
light labeled sample (unlabeled sample): A sample that has not been labelled or modified....
Definition: cv.hpp:6561
MS_protein_short_name
MS_protein_short_name
protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
Definition: cv.hpp:3351
MS_emulsion
MS_emulsion
emulsion: State if the sample is in emulsion form.
Definition: cv.hpp:417
UNIMOD_ADP_Ribosyl
UNIMOD_ADP_Ribosyl
ADP-Ribosyl: ADP Ribose addition.
Definition: cv.hpp:9789
MS_SEQUEST_summary
MS_SEQUEST_summary
SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
Definition: cv.hpp:4161
MS_combined_ms_ms___spectral_library_search
MS_combined_ms_ms___spectral_library_search
combined ms-ms + spectral library search: A combined MS2 (with fragment ions) and spectral library se...
Definition: cv.hpp:8685
MS______FL__
MS______FL__
(?<=[FL]): Regular expression for PepsinA.
Definition: cv.hpp:4419
UNIMOD_Gly__Ser
UNIMOD_Gly__Ser
Gly->Ser: Gly->Ser substitution.
Definition: cv.hpp:10494
UNIMOD_Ser__Val
UNIMOD_Ser__Val
Ser->Val: Ser->Val substitution.
Definition: cv.hpp:11859
MS_dilution_series__concentration_X
MS_dilution_series__concentration_X
dilution series, concentration X: The experimental design followed a dilution series design....
Definition: cv.hpp:5862
UNIMOD_EQAT
UNIMOD_EQAT
EQAT: EAPTA d0.
Definition: cv.hpp:9756
MS_Percolator
MS_Percolator
Percolator: Percolator.
Definition: cv.hpp:4875
MS_Mascot_Instrument
MS_Mascot_Instrument
Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
Definition: cv.hpp:5382
MS_kinetic_energy_release_distribution_OBSOLETE
MS_kinetic_energy_release_distribution_OBSOLETE
kinetic energy release distribution: Distribution of values of translational kinetic energy release f...
Definition: cv.hpp:1284
MS_raw_files_group_attribute
MS_raw_files_group_attribute
raw files group attribute: Attribute describing, how raw files build a raw file group.
Definition: cv.hpp:5883
MS_Paragon_contrib
MS_Paragon_contrib
Paragon:contrib: The Paragon result 'Contrib'.
Definition: cv.hpp:3969
MS_PSM_level_global_confidence
MS_PSM_level_global_confidence
PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
Definition: cv.hpp:7845
MS_peptide_shared_in_multiple_proteins
MS_peptide_shared_in_multiple_proteins
peptide shared in multiple proteins: A peptide matching multiple proteins.
Definition: cv.hpp:3984
UNIMOD_Hex_3_HexNAc_6_
UNIMOD_Hex_3_HexNAc_6_
Hex(3)HexNAc(6): Hex(3) HexNAc(6).
Definition: cv.hpp:13371
MS_SEQUEST_Fast
MS_SEQUEST_Fast
SEQUEST:Fast:
Definition: cv.hpp:3837
UNIMOD_OxProBiotinRed
UNIMOD_OxProBiotinRed
OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:9582
MS_collision_quadrupole
MS_collision_quadrupole
collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to...
Definition: cv.hpp:1347
UNIMOD_Cys__Thr
UNIMOD_Cys__Thr
Cys->Thr: Cys->Thr substitution.
Definition: cv.hpp:11451
UNIMOD_Cys__PyruvicAcid
UNIMOD_Cys__PyruvicAcid
Cys->PyruvicAcid: Pyruvic acid from N-term cys.
Definition: cv.hpp:10077
MS_unstable_ion_OBSOLETE
MS_unstable_ion_OBSOLETE
unstable ion: An ion with sufficient energy to dissociate within the ion source.
Definition: cv.hpp:1710
UNIMOD_Pro__Xle
UNIMOD_Pro__Xle
Pro->Xle: Pro->Leu/Ile substitution.
Definition: cv.hpp:10641
MS_6230B_Time_of_Flight_LC_MS
MS_6230B_Time_of_Flight_LC_MS
6230B Time-of-Flight LC/MS: The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8814
UO_inch
UO_inch
inch: A length unit which is equal to 0.0254 metres.
Definition: cv.hpp:14826
MS_ion_molecule_reaction_OBSOLETE
MS_ion_molecule_reaction_OBSOLETE
ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction...
Definition: cv.hpp:1857
MS_transmission_quadrupole_mass_spectrometer_OBSOLETE
MS_transmission_quadrupole_mass_spectrometer_OBSOLETE
transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods wh...
Definition: cv.hpp:1470
MS_selected_ion_current_chromatogram
MS_selected_ion_current_chromatogram
selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a...
Definition: cv.hpp:2550
UNIMOD_Met_loss
UNIMOD_Met_loss
Met-loss: Removal of initiator methionine from protein N-terminus.
Definition: cv.hpp:10920
UNIMOD_Hex_7_HexNAc_3_
UNIMOD_Hex_7_HexNAc_3_
Hex(7)HexNAc(3): Hex(7) HexNAc(3).
Definition: cv.hpp:12627
UNIMOD_ICAT_C
UNIMOD_ICAT_C
ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
Definition: cv.hpp:9564
PEFF_File_Header_Section_term
PEFF_File_Header_Section_term
File Header Section term: CV term that may appear in a PEFF File Header Section.
Definition: cv.hpp:123
MS_LOWESS_smoothing
MS_LOWESS_smoothing
LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted p...
Definition: cv.hpp:3021
MS_Triple_Quad_5500
MS_Triple_Quad_5500
Triple Quad 5500: SCIEX Triple Quad 5500.
Definition: cv.hpp:8232
UNIMOD_Ala__Lys
UNIMOD_Ala__Lys
Ala->Lys: Ala->Lys substitution.
Definition: cv.hpp:11400
MS_PIA_used_top_identifications_for_FDR
MS_PIA_used_top_identifications_for_FDR
PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR...
Definition: cv.hpp:7629
UNIMOD_Carbofuran
UNIMOD_Carbofuran
Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
Definition: cv.hpp:11235
UNIMOD_Phosphogluconoylation
UNIMOD_Phosphogluconoylation
Phosphogluconoylation: Phosphogluconoylation.
Definition: cv.hpp:12192
MS_DB_source_UniProt
MS_DB_source_UniProt
DB source UniProt: Database source UniProt.
Definition: cv.hpp:4188
MS_quantification_datatype
MS_quantification_datatype
quantification datatype: The data type of the value reported in a QuantLayer.
Definition: cv.hpp:5829
MS_external_reference_keyword
MS_external_reference_keyword
external reference keyword: Free text attribute that can enrich the information about an entity.
Definition: cv.hpp:6189
PEFF_NcbiTaxId
PEFF_NcbiTaxId
NcbiTaxId: NCBI taxonomy identifier.
Definition: cv.hpp:183
UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_
UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_
dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:12621
MS_isolation_window_target_m_z
MS_isolation_window_target_m_z
isolation window target m/z: The primary or reference m/z about which the isolation window is defined...
Definition: cv.hpp:3180
MS_Ascore_threshold
MS_Ascore_threshold
Ascore threshold: Threshold for Ascore PTM site location score.
Definition: cv.hpp:8121
UNIMOD_Pro__HAVA
UNIMOD_Pro__HAVA
Pro->HAVA: Proline oxidation to 5-hydroxy-2-aminovaleric acid.
Definition: cv.hpp:13608
MS_TOPP_PeakPickerWavelet
MS_TOPP_PeakPickerWavelet
TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted prof...
Definition: cv.hpp:6855
UO_pressure_unit
UO_pressure_unit
pressure unit: A unit which is a standard measure of the force applied to a given area.
Definition: cv.hpp:14130
UNIMOD_Delta_H__4_O_3_
UNIMOD_Delta_H__4_O_3_
Delta:H(-4)O(3): Tryptophan oxidation to hydroxy-bis-tryptophandione.
Definition: cv.hpp:13614
MS_mzMLb_format
MS_mzMLb_format
mzMLb format: mzMLb file format, mzML encapsulated within HDF5.
Definition: cv.hpp:8937
UNIMOD_dHex_1_Hex_3_HexNAc_1_
UNIMOD_dHex_1_Hex_3_HexNAc_1_
dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
Definition: cv.hpp:12864
MS_Compass
MS_Compass
Compass: Bruker Compass software.
Definition: cv.hpp:2805
UNIMOD_Dipyrrolylmethanemethyl
UNIMOD_Dipyrrolylmethanemethyl
Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
Definition: cv.hpp:10161
MS_Thermo_Electron_instrument_model
MS_Thermo_Electron_instrument_model
Thermo Electron instrument model: Thermo Electron Corporation instrument model.
Definition: cv.hpp:2076
MS_mzidLib_Tandem2Mzid
MS_mzidLib_Tandem2Mzid
mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
Definition: cv.hpp:7164
MS_Mascot_IncludeErrorTolerantMatches
MS_Mascot_IncludeErrorTolerantMatches
Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide m...
Definition: cv.hpp:4383
MS_TopPIC_max_shift
MS_TopPIC_max_shift
TopPIC:max shift: Maximum value of the mass shift (in Dalton) of an unexpected modification.
Definition: cv.hpp:9171
MS_SEQUEST_SelectAdvancedCV
MS_SEQUEST_SelectAdvancedCV
SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
Definition: cv.hpp:3894
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide...
Definition: cv.hpp:10158
MS_Phenyx_Conflict_Resolution
MS_Phenyx_Conflict_Resolution
Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorit...
Definition: cv.hpp:4569
UNIMOD_Hex_5_HexNAc_3_
UNIMOD_Hex_5_HexNAc_3_
Hex(5)HexNAc(3): Hex(5) HexNAc(3).
Definition: cv.hpp:12489
MS_TOPP_FeatureFinderCentroided
MS_TOPP_FeatureFinderCentroided
TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
Definition: cv.hpp:6945
MS_dwell_time
MS_dwell_time
dwell time: The time spent gathering data across a peak.
Definition: cv.hpp:2112
MS_time_lag_focusing
MS_time_lag_focusing
time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by intr...
Definition: cv.hpp:1413
UO_relative_light_unit
UO_relative_light_unit
relative light unit: A derived unit which is a measure of relative light intensity,...
Definition: cv.hpp:14733
MS_mass_trace_reporting__polygons
MS_mass_trace_reporting__polygons
mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygon...
Definition: cv.hpp:5895
UO_pound
UO_pound
pound: An imperial mass unit which is equivalent to 453.592,37 grams.
Definition: cv.hpp:14895
MS_TopPIC_combined_spectrum_number
MS_TopPIC_combined_spectrum_number
TopPIC:combined spectrum number: Number of combined spectra.
Definition: cv.hpp:9195
MS_Paragon__instrument_setting
MS_Paragon__instrument_setting
Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level...
Definition: cv.hpp:7722
UNIMOD_Amino
UNIMOD_Amino
Amino: Tyrosine oxidation to 2-aminotyrosine.
Definition: cv.hpp:9981
MS_Laser_Ionization_MERGE_OBSOLETE
MS_Laser_Ionization_MERGE_OBSOLETE
Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser w...
Definition: cv.hpp:1293
UNIMOD_Methyl_PEO12_Maleimide
UNIMOD_Methyl_PEO12_Maleimide
Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
Definition: cv.hpp:11061
UNIMOD_Val__Met
UNIMOD_Val__Met
Val->Met: Val->Met substitution.
Definition: cv.hpp:10761
MS_ultraflex
MS_ultraflex
ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
Definition: cv.hpp:969
UO_electronvolt
UO_electronvolt
electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electro...
Definition: cv.hpp:14595
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5571
MS_LTQ_Orbitrap_XL
MS_LTQ_Orbitrap_XL
LTQ Orbitrap XL: LTQ Orbitrap XL.
Definition: cv.hpp:2277
MS_collision_energy
MS_collision_energy
collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting i...
Definition: cv.hpp:411
UNIMOD_Trp__Glu
UNIMOD_Trp__Glu
Trp->Glu: Trp->Glu substitution.
Definition: cv.hpp:11931
MS_metabolic_labelling_purity
MS_metabolic_labelling_purity
metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity ...
Definition: cv.hpp:6657
MS_DiART_quantitation_analysis
MS_DiART_quantitation_analysis
DiART quantitation analysis: Quantification analysis using the amine-reactive deuterium isobaric amin...
Definition: cv.hpp:8703
UO_viscosity_unit
UO_viscosity_unit
viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
Definition: cv.hpp:14565
UNIMOD_Xlink_DSSO_175_
UNIMOD_Xlink_DSSO_175_
Xlink:DSSO[175]: Ammonia-quenched monolink of DSSO crosslinker.
Definition: cv.hpp:13512
MS_Mascot_ShowDecoyMatches
MS_Mascot_ShowDecoyMatches
Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated deco...
Definition: cv.hpp:4386
UNIMOD_Phe__Arg
UNIMOD_Phe__Arg
Phe->Arg: Phe->Arg substitution.
Definition: cv.hpp:11556
UNIMOD_Amidated
UNIMOD_Amidated
Amidated: Amidation.
Definition: cv.hpp:9375
MS_protein_group_level_probability
MS_protein_group_level_probability
protein group-level probability: Probability that at least one of the members of a group of protein s...
Definition: cv.hpp:7578
MS_low_energy_collision_induced_dissociation
MS_low_energy_collision_induced_dissociation
low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precu...
Definition: cv.hpp:1875
UNIMOD_Ahx2_Hsl
UNIMOD_Ahx2_Hsl
Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
Definition: cv.hpp:11319
MS_TOPP_SpectraFilterThresholdMower
MS_TOPP_SpectraFilterThresholdMower
TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
Definition: cv.hpp:6882
MS_TWIMS_OBSOLETE
MS_TWIMS_OBSOLETE
TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique b...
Definition: cv.hpp:5805
UNIMOD_Nmethylmaleimide_water
UNIMOD_Nmethylmaleimide_water
Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
Definition: cv.hpp:10308
MS_Mascot_PTM_site_assignment_confidence_threshold
MS_Mascot_PTM_site_assignment_confidence_threshold
Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.
Definition: cv.hpp:8136
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of ...
Definition: cv.hpp:5409
MS_database_nr
MS_database_nr
database nr: Non-redundant GenBank sequence database.
Definition: cv.hpp:3711
MS_TagRecon
MS_TagRecon
TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
Definition: cv.hpp:5163
MS_param__b_ion_NH3_DEPRECATED
MS_param__b_ion_NH3_DEPRECATED
param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammoni...
Definition: cv.hpp:3906
UNIMOD_Xlink_DSS_156_
UNIMOD_Xlink_DSS_156_
Xlink:DSS[156]: Water-quenched monolink of DSS/BS3 crosslinker.
Definition: cv.hpp:11331
MS_ProteomeDiscoverer_Residue_substitution_list
MS_ProteomeDiscoverer_Residue_substitution_list
ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
Definition: cv.hpp:5622
MS_charge_stripping_reaction_OBSOLETE
MS_charge_stripping_reaction_OBSOLETE
charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive ch...
Definition: cv.hpp:1821
UO_gigabasepair
UO_gigabasepair
gigabasepair: A unit equal to one billion base pairs.
Definition: cv.hpp:14787
MS_PA_OBSOLETE
MS_PA_OBSOLETE
PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy c...
Definition: cv.hpp:1101
MS_chromatogram_title
MS_chromatogram_title
chromatogram title: A free-form text title describing a chromatogram.
Definition: cv.hpp:3123
MS_Agilent_instrument_model
MS_Agilent_instrument_model
Agilent instrument model: Agilent instrument model.
Definition: cv.hpp:2070
MS_Phenyx_Turbo_Coverage
MS_Phenyx_Turbo_Coverage
Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent,...
Definition: cv.hpp:4551
MS_MS1_label_based_analysis
MS_MS1_label_based_analysis
MS1 label-based analysis: MS1 label-based analysis.
Definition: cv.hpp:6498
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5484
MS_mean_inverse_reduced_ion_mobility_array
MS_mean_inverse_reduced_ion_mobility_array
mean inverse reduced ion mobility array: Array of drift times or inverse reduced ion mobilities,...
Definition: cv.hpp:8871
MS_pulse_counting
MS_pulse_counting
pulse counting: Definition to do.
Definition: cv.hpp:690
MS_PTM_localization_PSM_level_statistic
MS_PTM_localization_PSM_level_statistic
PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an am...
Definition: cv.hpp:6327
UO_peta
UO_peta
peta: A prefix in the metric system denoting a factor of ten to the power of 15.
Definition: cv.hpp:14667
MS_database_release_date_OBSOLETE
MS_database_release_date_OBSOLETE
database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search datab...
Definition: cv.hpp:3549
MS_spectrum_multiply_subsumable_protein
MS_spectrum_multiply_subsumable_protein
spectrum multiply subsumable protein: A protein for which the matched spectra are the same,...
Definition: cv.hpp:8166
UNIMOD_Tyr__Val
UNIMOD_Tyr__Val
Tyr->Val: Tyr->Val substitution.
Definition: cv.hpp:11991
MS_PRIDE_experiment_URI
MS_PRIDE_experiment_URI
PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
Definition: cv.hpp:6207
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability...
Definition: cv.hpp:5421
MS_Paul_Ion_trap
MS_Paul_Ion_trap
Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three d...
Definition: cv.hpp:549
MS_second_pass_peptide_identification
MS_second_pass_peptide_identification
second-pass peptide identification: A putative identified peptide found in a second-pass search of pr...
Definition: cv.hpp:7473
MS_peptide_ion_level_spectral_count
MS_peptide_ion_level_spectral_count
peptide ion-level spectral count: The number of MS2 spectra identified for a molecular ion defined by...
Definition: cv.hpp:8622
MS_PSM_level_attribute
MS_PSM_level_attribute
PSM-level attribute: Attribute of a single peptide-spectrum match.
Definition: cv.hpp:7485
MS_API_3200
MS_API_3200
API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
Definition: cv.hpp:2631
MS_phosphoRS_score_threshold
MS_phosphoRS_score_threshold
phosphoRS score threshold: Threshold for phosphoRS score.
Definition: cv.hpp:8154
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
transition validated with an MS/MS spectrum on specified instrument: The transition has been validate...
Definition: cv.hpp:3441
UO_dose_unit
UO_dose_unit
dose unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceutica...
Definition: cv.hpp:14718
UO_meter_per_second
UO_meter_per_second
meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter di...
Definition: cv.hpp:14085
UNIMOD_Gly
UNIMOD_Gly
Gly: Addition of Glycine.
Definition: cv.hpp:12039
MS_PSM_level_global_FNR
MS_PSM_level_global_FNR
PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
Definition: cv.hpp:7842
UNIMOD_Glu__Thr
UNIMOD_Glu__Thr
Glu->Thr: Glu->Thr substitution.
Definition: cv.hpp:11517
UO_microvolt
UO_microvolt
microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6]...
Definition: cv.hpp:14544
MS_SEQUEST_CleavesAt
MS_SEQUEST_CleavesAt
SEQUEST:CleavesAt:
Definition: cv.hpp:3516
MS_zlib_compression
MS_zlib_compression
zlib compression: Zlib.
Definition: cv.hpp:2331
UNIMOD_Diironsubcluster
UNIMOD_Diironsubcluster
Diironsubcluster: Hydrogenase diiron subcluster.
Definition: cv.hpp:10221
MS_leukocyte_elastase
MS_leukocyte_elastase
leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
Definition: cv.hpp:6159
MS_IRMPD
MS_IRMPD
IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates ...
Definition: cv.hpp:1269
MS_surface_induced_dissociation
MS_surface_induced_dissociation
surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
Definition: cv.hpp:771
MS_peptide_level_spectral_count
MS_peptide_level_spectral_count
peptide-level spectral count: The number of MS2 spectra identified for a peptide sequence specified b...
Definition: cv.hpp:8619
UNIMOD_Hex_4_HexNAc_3_NeuAc_1_
UNIMOD_Hex_4_HexNAc_3_NeuAc_1_
Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc —OR— Hex(3) HexNAc(4) Kdn.
Definition: cv.hpp:13362
MS_None____OBSOLETE
MS_None____OBSOLETE
None ??: None.
Definition: cv.hpp:630
UNIMOD_Label_13C_6__Acetyl
UNIMOD_Label_13C_6__Acetyl
Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
Definition: cv.hpp:10989
MS_micrOTOF
MS_micrOTOF
micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
Definition: cv.hpp:2775
MS_CAD
MS_CAD
CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation....
Definition: cv.hpp:753
MS_search_tolerance_minus_value
MS_search_tolerance_minus_value
search tolerance minus value:
Definition: cv.hpp:4638
UNIMOD_Pro__Ser
UNIMOD_Pro__Ser
Pro->Ser: Pro->Ser substitution.
Definition: cv.hpp:10623
UNIMOD_cysTMT
UNIMOD_cysTMT
cysTMT: Native cysteine-reactive Tandem Mass Tag®.
Definition: cv.hpp:11247
UO_radioactivity_concentration
UO_radioactivity_concentration
radioactivity concentration: A concentration unit which is a standard measure of the amount of radioa...
Definition: cv.hpp:14754
UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
Definition: cv.hpp:13107
UNIMOD_ICDID
UNIMOD_ICDID
ICDID: Isotope-Coded Dimedone light form.
Definition: cv.hpp:11325
MS_no_cleavage
MS_no_cleavage
no cleavage: No cleavage.
Definition: cv.hpp:6288
MS_TOPP_FeatureLinkerUnlabeled
MS_TOPP_FeatureLinkerUnlabeled
TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
Definition: cv.hpp:6975
MS_PeptideProphet
MS_PeptideProphet
PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data search...
Definition: cv.hpp:7311
MS_negative_mode_adduct_ion
MS_negative_mode_adduct_ion
negative mode adduct ion: Adduct ion with negative ionization.
Definition: cv.hpp:8844
UNIMOD_Nmethylmaleimide
UNIMOD_Nmethylmaleimide
Nmethylmaleimide: Nmethylmaleimide.
Definition: cv.hpp:9933
MS_common_software_input_parameter
MS_common_software_input_parameter
common software input parameter: Software input parameter that is shared by more than one software.
Definition: cv.hpp:6759
UNIMOD_CAMthiopropanoyl
UNIMOD_CAMthiopropanoyl
CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
Definition: cv.hpp:9885
MS_MD_Score
MS_MD_Score
MD-Score: MD-Score for PTM site location at the PSM-level.
Definition: cv.hpp:8064
MS_ProteomeDiscoverer_Dynamic_Modification
MS_ProteomeDiscoverer_Dynamic_Modification
ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).
Definition: cv.hpp:5346
MS_Phenyx_MinPepLength
MS_Phenyx_MinPepLength
Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identi...
Definition: cv.hpp:4557
UO_cubic_meter
UO_cubic_meter
cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length....
Definition: cv.hpp:14091
UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_
UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_
dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:13230
MS_DTA_format
MS_DTA_format
DTA format: SEQUEST DTA file format.
Definition: cv.hpp:2499
MS_activation_energy
MS_activation_energy
activation energy: Activation Energy.
Definition: cv.hpp:2133
UNIMOD_Ser__Asn
UNIMOD_Ser__Asn
Ser->Asn: Ser->Asn substitution.
Definition: cv.hpp:10707
UNIMOD_EDT_maleimide_PEO_biotin
UNIMOD_EDT_maleimide_PEO_biotin
EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
Definition: cv.hpp:9552
UNIMOD_dHex_1_Hex_4_HexNAc_4_
UNIMOD_dHex_1_Hex_4_HexNAc_4_
dHex(1)Hex(4)HexNAc(4): DHex Hex(4) HexNAc(4) —OR— Hex(4) HexNAc(4) Pent Me.
Definition: cv.hpp:9912
UNIMOD_Hex_3_HexNAc_4_NeuAc_2_
UNIMOD_Hex_3_HexNAc_4_NeuAc_2_
Hex(3)HexNAc(4)NeuAc(2): Hex(3) HexNAc(4) NeuAc(2).
Definition: cv.hpp:13734
MS_original_nucleic_acid_sequence
MS_original_nucleic_acid_sequence
original nucleic acid sequence: Specification of the original nucleic acid sequence,...
Definition: cv.hpp:6531
UNIMOD_Asp__Ser
UNIMOD_Asp__Ser
Asp->Ser: Asp->Ser substitution.
Definition: cv.hpp:11481
UNIMOD_dHex_2_Hex_2_HexNAc_4_Sulf_2_
UNIMOD_dHex_2_Hex_2_HexNAc_4_Sulf_2_
dHex(2)Hex(2)HexNAc(4)Sulf(2): Sulf(2) dHex(2) Hex(2) HexNAc(4).
Definition: cv.hpp:13710
MS_analyzer_type_OBSOLETE
MS_analyzer_type_OBSOLETE
analyzer type: The common name of the particular analyzer stage being described. Synonym of mass anal...
Definition: cv.hpp:291
MS_frag__TMT_ETD_reporter_ion
MS_frag__TMT_ETD_reporter_ion
frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot hold...
Definition: cv.hpp:8472
UNIMOD_ICAT_D_2H_8_
UNIMOD_ICAT_D_2H_8_
ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
Definition: cv.hpp:9405
MS_SCIEX_API_III_format
MS_SCIEX_API_III_format
SCIEX API III format: PE SCIEX peak list file format.
Definition: cv.hpp:4167
UNIMOD_dHex_2_Hex_4_HexNAc_5_
UNIMOD_dHex_2_Hex_4_HexNAc_5_
dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
Definition: cv.hpp:13398
MS_iTRAQ_reagent_118
MS_iTRAQ_reagent_118
iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
Definition: cv.hpp:8337
UNIMOD_Triiodothyronine
UNIMOD_Triiodothyronine
Triiodothyronine: Triiodo.
Definition: cv.hpp:10113
MS_MS_GF_PEP
MS_MS_GF_PEP
MS-GF:PEP: MS-GF posterior error probability.
Definition: cv.hpp:6618
MS_precursor_neutral_loss
MS_precursor_neutral_loss
precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
Definition: cv.hpp:4980
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modif...
Definition: cv.hpp:5430
UO_spatial_resolution_unit
UO_spatial_resolution_unit
spatial resolution unit: An image resolution unit which is a standard measure of the way luminance an...
Definition: cv.hpp:14514
MS_unimolecular_dissociation_OBSOLETE
MS_unimolecular_dissociation_OBSOLETE
unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one,...
Definition: cv.hpp:1902
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_
Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
Definition: cv.hpp:12396
MS_modulation_time
MS_modulation_time
modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional se...
Definition: cv.hpp:6573
UNIMOD_EQIGG
UNIMOD_EQIGG
EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
Definition: cv.hpp:10998
MS_Progenesis_LC_MS
MS_Progenesis_LC_MS
Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
Definition: cv.hpp:5904
UNIMOD_AEC_MAEC
UNIMOD_AEC_MAEC
AEC-MAEC: Aminoethylcysteine.
Definition: cv.hpp:10272
MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE
MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE
decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
Definition: cv.hpp:4293
MS_AXIMA_Performance_MALDI_TOF_TOF
MS_AXIMA_Performance_MALDI_TOF_TOF
AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
Definition: cv.hpp:2490
MS_Paragon__channel_to_use_as_denominator_in_ratios
MS_Paragon__channel_to_use_as_denominator_in_ratios
Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which labe...
Definition: cv.hpp:7743
UNIMOD_Trp__Ser
UNIMOD_Trp__Ser
Trp->Ser: Trp->Ser substitution.
Definition: cv.hpp:10773
PEFF_CC
PEFF_CC
CC: Entry associated comment.
Definition: cv.hpp:222
MS_ProteomeDiscoverer_Maximum_Peptides_Output
MS_ProteomeDiscoverer_Maximum_Peptides_Output
ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
Definition: cv.hpp:5439
MS_LTQ_XL_ETD
MS_LTQ_XL_ETD
LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
Definition: cv.hpp:2586
MS_HCTultra
MS_HCTultra
HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2763
UO_radiance_unit
UO_radiance_unit
radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through s...
Definition: cv.hpp:14280
MS_FDRScore_for_proteins
MS_FDRScore_for_proteins
FDRScore for proteins: MzidLibrary FDRScore for proteins specifically obtained for distinct combinati...
Definition: cv.hpp:7545
MS_DB_PI_filter_minimum
MS_DB_PI_filter_minimum
DB PI filter minimum: Minimum value of isoelectric point filter.
Definition: cv.hpp:4047
MS_microflex
MS_microflex
microflex: Bruker Daltonics' microflex: MALDI TOF.
Definition: cv.hpp:897
MS_local_retention_time
MS_local_retention_time
local retention time: A time interval from the start of chromatography when an analyte exits an unspe...
Definition: cv.hpp:3390
UO_chroma_sampling_unit
UO_chroma_sampling_unit
chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial d...
Definition: cv.hpp:14508
MS_6120A_Quadrupole_LC_MS
MS_6120A_Quadrupole_LC_MS
6120A Quadrupole LC/MS: The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrume...
Definition: cv.hpp:2004
MS_Dataset_FTP_location
MS_Dataset_FTP_location
Dataset FTP location: FTP location of one entire PX data set.
Definition: cv.hpp:8979
UO_dots_per_inch
UO_dots_per_inch
dots per inch: A spatial resolution unit which is a standard measure of the printing resolution,...
Definition: cv.hpp:14517
UNIMOD_Arg__Npo
UNIMOD_Arg__Npo
Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
Definition: cv.hpp:10995
MS_cationized_molecule_OBSOLETE
MS_cationized_molecule_OBSOLETE
cationized molecule: An ion formed by the association of a cation with a neutral molecule,...
Definition: cv.hpp:1644
MS_compound_identification_confidence_level
MS_compound_identification_confidence_level
compound identification confidence level: Confidence level for annotation of identified compounds as ...
Definition: cv.hpp:9111
UNIMOD_DimethylamineGMBS
UNIMOD_DimethylamineGMBS
DimethylamineGMBS: Modified GMBS X linker.
Definition: cv.hpp:11169
MS_SQ_Detector_2
MS_SQ_Detector_2
SQ Detector 2: Waters quadrupole based SQ Detector 2.
Definition: cv.hpp:7269
pwiz::cv::CVTermInfo::name
std::string name
Definition: cv.hpp:14947
MS_cross_linking_search
MS_cross_linking_search
cross-linking search: Cross-linking search performed.
Definition: cv.hpp:7932
MS_value_greater_than_zero_but_less_than_or_equal_to_one
MS_value_greater_than_zero_but_less_than_or_equal_to_one
value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
Definition: cv.hpp:7497
UNIMOD_Hex_3_HexNAc_4_NeuAc_1_
UNIMOD_Hex_3_HexNAc_4_NeuAc_1_
Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc —OR— Hex(2) HexNAc(4) dHex NeuGc.
Definition: cv.hpp:12549
MS_search_result_details_OBSOLETE
MS_search_result_details_OBSOLETE
search result details: OBSOLETE: Scores and global result characteristics.
Definition: cv.hpp:4068
UNIMOD_Arg
UNIMOD_Arg
Arg: Addition of arginine due to transpeptidation.
Definition: cv.hpp:12084
UO_relative_fluorescence_unit
UO_relative_fluorescence_unit
relative fluorescence unit: A relative light unit which is a measure of relative fluorescence intensi...
Definition: cv.hpp:14739
UNIMOD_Dimethyl_2H_4_13C_2_
UNIMOD_Dimethyl_2H_4_13C_2_
Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
Definition: cv.hpp:10326
UO_radian_per_second
UO_radian_per_second
radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minu...
Definition: cv.hpp:14040
UO_milligray
UO_milligray
milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
Definition: cv.hpp:14226
MS_frag__isobaric_label_ion
MS_frag__isobaric_label_ion
frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
Definition: cv.hpp:8544
UNIMOD_Hex_3_HexNAc_2_NeuAc_2_
UNIMOD_Hex_3_HexNAc_2_NeuAc_2_
Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
Definition: cv.hpp:13188
UNIMOD_His__Trp
UNIMOD_His__Trp
His->Trp: His->Trp substitution.
Definition: cv.hpp:11625
MS_TOPP_IDConflictResolver
MS_TOPP_IDConflictResolver
TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
Definition: cv.hpp:7014
MS_TOPP_FalseDiscoveryRate
MS_TOPP_FalseDiscoveryRate
TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy ...
Definition: cv.hpp:7059
UNIMOD_OxProBiotin
UNIMOD_OxProBiotin
OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:9585
UO_deci
UO_deci
deci: A prefix in the metric system denoting a factor of one tenth.
Definition: cv.hpp:14685
MS_product_ion_spectrum
MS_product_ion_spectrum
product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record pro...
Definition: cv.hpp:2373
UNIMOD_Hex_1_HexNAc_3_NeuGc_1_
UNIMOD_Hex_1_HexNAc_3_NeuGc_1_
Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
Definition: cv.hpp:12975
MS_add_others_OBSOLETE
MS_add_others_OBSOLETE
add_others: OBSOLETE.
Definition: cv.hpp:4389
MS_Bruker_Daltonics_flex_series
MS_Bruker_Daltonics_flex_series
Bruker Daltonics flex series: Bruker Daltonics' flex series.
Definition: cv.hpp:5007
MS_fraction_identifier
MS_fraction_identifier
fraction identifier: Identier string that describes the sample fraction. This identifier should conta...
Definition: cv.hpp:3270
MS_Comet_deltacn
MS_Comet_deltacn
Comet:deltacn: The Comet result 'DeltaCn'.
Definition: cv.hpp:7206
MS_cluster_identifier
MS_cluster_identifier
cluster identifier: An identifier applied to protein groups to indicate that they are linked by share...
Definition: cv.hpp:7671
MS_MaxQuant_feature_intensity
MS_MaxQuant_feature_intensity
MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
Definition: cv.hpp:6123
UNIMOD_Met__Gln
UNIMOD_Met__Gln
Met->Gln: Met->Gln substitution.
Definition: cv.hpp:11706
UNIMOD_Trimethyl
UNIMOD_Trimethyl
Trimethyl: Tri-Methylation.
Definition: cv.hpp:9456
MS_basepeak_chromatogram
MS_basepeak_chromatogram
basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each ti...
Definition: cv.hpp:2556
UO_centi
UO_centi
centi: A prefix in the metric system denoting a factor of one hundred.
Definition: cv.hpp:14691
MS_ProteomeXchange_project_tag
MS_ProteomeXchange_project_tag
ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the groupi...
Definition: cv.hpp:7470
UO_centiMorgan
UO_centiMorgan
centiMorgan: A unit used to express distances on a genetic map. In genetic mapping,...
Definition: cv.hpp:14775
UNIMOD_Heme
UNIMOD_Heme
Heme: Heme.
Definition: cv.hpp:10092
UNIMOD_Lys__Gln
UNIMOD_Lys__Gln
Lys->Gln: Lys->Gln substitution.
Definition: cv.hpp:10548
MS_ionization_efficiency_OBSOLETE
MS_ionization_efficiency_OBSOLETE
ionization efficiency: The ratio of the number of ions formed to the number of electrons,...
Definition: cv.hpp:1041
MS_OMEGA_2001
MS_OMEGA_2001
OMEGA-2001: IonSpec OMEGA-2001 MS.
Definition: cv.hpp:912
UNIMOD_Trp__Pro
UNIMOD_Trp__Pro
Trp->Pro: Trp->Pro substitution.
Definition: cv.hpp:11949
MS_explorer
MS_explorer
explorer: IonSpec Explorer MS.
Definition: cv.hpp:840
MS_transition_predicted_by_informatic_analysis
MS_transition_predicted_by_informatic_analysis
transition predicted by informatic analysis: The transition has been predicted by informatics softwar...
Definition: cv.hpp:3447
MS_HCTultra_ETD_II
MS_HCTultra_ETD_II
HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI,...
Definition: cv.hpp:2769
MS_nitrogen_rule_OBSOLETE
MS_nitrogen_rule_OBSOLETE
nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nomin...
Definition: cv.hpp:1083
UNIMOD_Delta_H_4_C_5_O_1_
UNIMOD_Delta_H_4_C_5_O_1_
Delta:H(4)C(5)O(1): Methylglyoxal-derived argpyrimidine.
Definition: cv.hpp:13623
MS_SEQUEST_xcorr
MS_SEQUEST_xcorr
SEQUEST:xcorr: The SEQUEST result 'XCorr'.
Definition: cv.hpp:3924
UO_count_per_molar
UO_count_per_molar
count per molar: A rate unit which is equal to one over one molar.
Definition: cv.hpp:14652
UNIMOD_Delta_H_1_N__1_18O_1_
UNIMOD_Delta_H_1_N__1_18O_1_
Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
Definition: cv.hpp:9714
MS_mass_spectrum
MS_mass_spectrum
mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function o...
Definition: cv.hpp:1443
UNIMOD_Hex_7_HexNAc_1_
UNIMOD_Hex_7_HexNAc_1_
Hex(7)HexNAc(1): Hex(7) HexNAc.
Definition: cv.hpp:12465
MS_Byonic_DeltaMod_Score
MS_Byonic_DeltaMod_Score
Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide diff...
Definition: cv.hpp:7239
MS_reservoir
MS_reservoir
reservoir: A sample inlet method involving a reservoir.
Definition: cv.hpp:480
UO_exposure_unit
UO_exposure_unit
exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radia...
Definition: cv.hpp:14193
MS_TOPP_NoiseFilterGaussian
MS_TOPP_NoiseFilterGaussian
TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
Definition: cv.hpp:6843
UO_zepto
UO_zepto
zepto: A prefix in the metric system denoting a factor of 10 to the power of -21.
Definition: cv.hpp:14712
UNIMOD_Xle__Pro
UNIMOD_Xle__Pro
Xle->Pro: Leu/Ile->Pro substitution.
Definition: cv.hpp:10569
UO_degree_Celsius
UO_degree_Celsius
degree Celsius: A temperature unit which is equal to one kelvin degree. However, they have their zero...
Definition: cv.hpp:13884
UNIMOD_Thrbiotinhydrazide
UNIMOD_Thrbiotinhydrazide
Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
Definition: cv.hpp:10023
UNIMOD_Hex_8_Phos_3_
UNIMOD_Hex_8_Phos_3_
Hex(8)Phos(3): Hex(8) Phos(3).
Definition: cv.hpp:13221
UNIMOD_O_Et_N_diMePhospho
UNIMOD_O_Et_N_diMePhospho
O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
Definition: cv.hpp:12219
UO_plaque_forming_unit_per_volume
UO_plaque_forming_unit_per_volume
plaque forming unit per volume: A concentration unit which a measure of plague forming units in a giv...
Definition: cv.hpp:14439
MS_iTRAQ_reagent_116
MS_iTRAQ_reagent_116
iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
Definition: cv.hpp:8331
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_
dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
Definition: cv.hpp:13194
MS_Vion_IMS_QTof
MS_Vion_IMS_QTof
Vion IMS QTof: Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrome...
Definition: cv.hpp:8604
MS_empirical_formula
MS_empirical_formula
empirical formula: A chemical formula which expresses the proportions of the elements present in a su...
Definition: cv.hpp:3297
MS_FAIMS_OBSOLETE
MS_FAIMS_OBSOLETE
FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two ...
Definition: cv.hpp:1233
UO_parts_per_trillion
UO_parts_per_trillion
parts per trillion: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:14310
MS_source_sprayer_type
MS_source_sprayer_type
source sprayer type: The source sprayer type.
Definition: cv.hpp:6222
MS_FileConverter
MS_FileConverter
FileConverter: Converts between different MS file formats.
Definition: cv.hpp:2937
UNIMOD_Hex_2_HexNAc_4_
UNIMOD_Hex_2_HexNAc_4_
Hex(2)HexNAc(4): Hex(2) HexNAc(4).
Definition: cv.hpp:12999
MS_FI
MS_FI
FI (field ionization): The removal of electrons from any species by interaction with a high electric ...
Definition: cv.hpp:1245
MS_ICPL_reagent
MS_ICPL_reagent
ICPL reagent: Isotope coded protein labeling reagent.
Definition: cv.hpp:8271
UNIMOD_MTSL
UNIMOD_MTSL
MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
Definition: cv.hpp:11112
MS_clustal_aln
MS_clustal_aln
clustal aln: ClustalW ALN (multiple alignment) format.
Definition: cv.hpp:4461
MS_PepsinA
MS_PepsinA
PepsinA: PepsinA proteinase.
Definition: cv.hpp:4344
UNIMOD_Delta_S__1_Se_1_
UNIMOD_Delta_S__1_Se_1_
Delta:S(-1)Se(1): Selenium replaces sulfur.
Definition: cv.hpp:9711
MS_TopPIC_spectral_p_value
MS_TopPIC_spectral_p_value
TopPIC:spectral p-value: TopPIC spectrum-level p-value.
Definition: cv.hpp:9216
UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_
UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_
dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn —OR— Hex(2) HexNAc dHex(2) NeuAc.
Definition: cv.hpp:12993
MS_number_of_peaks_submitted
MS_number_of_peaks_submitted
number of peaks submitted: The number of peaks from the original peaks listed that were submitted to ...
Definition: cv.hpp:3831
PEFF_SequenceType
PEFF_SequenceType
SequenceType: Molecular type of the sequences.
Definition: cv.hpp:156
MS_Synapt_HDMS
MS_Synapt_HDMS
Synapt HDMS: Waters oa-ToF based Synapt HDMS.
Definition: cv.hpp:5757
UNIMOD_ICAT_H_13C_6_
UNIMOD_ICAT_H_13C_6_
ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
Definition: cv.hpp:9609
MS_SIM
MS_SIM
SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of sever...
Definition: cv.hpp:987
MS_product_background
MS_product_background
product background: The background area for the quantified transition.
Definition: cv.hpp:7689
MS_Trans_Proteomic_Pipeline
MS_Trans_Proteomic_Pipeline
Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data deve...
Definition: cv.hpp:7302
UNIMOD_GluGluGluGlu
UNIMOD_GluGluGluGlu
GluGluGluGlu: Tetraglutamyl.
Definition: cv.hpp:10257
MS_Electronic_Ionization_OBSOLETE
MS_Electronic_Ionization_OBSOLETE
Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelera...
Definition: cv.hpp:501
UNIMOD_dHex_1_Hex_7_HexNAc_2_
UNIMOD_dHex_1_Hex_7_HexNAc_2_
dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
Definition: cv.hpp:12585
UO_femto
UO_femto
femto: A prefix in the metric system denoting a factor of 10 to the power of -15.
Definition: cv.hpp:14706
MS_chromatography_OBSOLETE
MS_chromatography_OBSOLETE
chromatography: Chromatographic conditions used to obtain the sample.
Definition: cv.hpp:438
UNIMOD_Quinone
UNIMOD_Quinone
Quinone: Quinone.
Definition: cv.hpp:10098
MS_protein_group_level_result_list_attribute
MS_protein_group_level_result_list_attribute
protein group-level result list attribute: Details describing a protein cluster.
Definition: cv.hpp:7665
MS_number_of_matched_peaks
MS_number_of_matched_peaks
number of matched peaks: The number of peaks that were matched as qualified by the ion series conside...
Definition: cv.hpp:3822
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether...
Definition: cv.hpp:5457
MS_frag__internal_yb_ion
MS_frag__internal_yb_ion
frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
Definition: cv.hpp:4503
MS_sprayed_MALDI_matrix_preparation
MS_sprayed_MALDI_matrix_preparation
sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
Definition: cv.hpp:3210
MS_ProteinLynx_Global_Server_mass_spectrum_XML_format
MS_ProteinLynx_Global_Server_mass_spectrum_XML_format
ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global ...
Definition: cv.hpp:2502
UNIMOD_His__Val
UNIMOD_His__Val
His->Val: His->Val substitution.
Definition: cv.hpp:11622
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
ProteomeDiscoverer:Source file extension: File type (if not pepXML).
Definition: cv.hpp:5625
MS_MAT900XP
MS_MAT900XP
MAT900XP: ThermoFinnigan MAT900XP MS.
Definition: cv.hpp:885
MS_APCI
MS_APCI
APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric ...
Definition: cv.hpp:492
UNIMOD_AFB1_Dialdehyde
UNIMOD_AFB1_Dialdehyde
AFB1_Dialdehyde: Adduction of aflatoxin B1 Dialdehyde to lysine.
Definition: cv.hpp:13605
MS_Skyline_mzQuantML_converter
MS_Skyline_mzQuantML_converter
Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
Definition: cv.hpp:8091
MS_MIM_spectrum
MS_MIM_spectrum
MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the...
Definition: cv.hpp:2382
MS_proteoform_level_global_FDR
MS_proteoform_level_global_FDR
proteoform-level global FDR: Estimation of the global false discovery rate of proteoforms.
Definition: cv.hpp:9144
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4731
MS_ProteinExtractor_SequestWeighting
MS_ProteinExtractor_SequestWeighting
ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the s...
Definition: cv.hpp:4713
MS_consensusXML
MS_consensusXML
consensusXML: OpenMS consensus map format.
Definition: cv.hpp:8898
UNIMOD_Atto495Maleimide
UNIMOD_Atto495Maleimide
Atto495Maleimide: High molecular absorption maleimide label for proteins.
Definition: cv.hpp:11145
MS_no_PSM_threshold
MS_no_PSM_threshold
no PSM threshold: Indicating that no PSM threshold was used.
Definition: cv.hpp:7953
PEFF_GName
PEFF_GName
GName: Gene name.
Definition: cv.hpp:189
UNIMOD_ICPL_13C_6_
UNIMOD_ICPL_13C_6_
ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
Definition: cv.hpp:10032
MS_Paragon__search_effort
MS_Paragon__search_effort
Paragon: search effort: The Paragon method setting that controls the two major modes of search effort...
Definition: cv.hpp:7725
MS_protein_group_list_attribute
MS_protein_group_list_attribute
protein group list attribute: Attribute describing a protein group list.
Definition: cv.hpp:6783
UNIMOD_GPIanchor
UNIMOD_GPIanchor
GPIanchor: Glycosylphosphatidylinositol.
Definition: cv.hpp:10104
MS_Bruker_BAF_nativeID_format
MS_Bruker_BAF_nativeID_format
Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2988
UNIMOD_Farnesyl
UNIMOD_Farnesyl
Farnesyl: Farnesylation.
Definition: cv.hpp:9474
MS_Xevo_G2_S_QTof
MS_Xevo_G2_S_QTof
Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
Definition: cv.hpp:7275
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5550
UNIMOD_Hex_2_HexNAc_1_NeuGc_2_
UNIMOD_Hex_2_HexNAc_1_NeuGc_2_
Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
Definition: cv.hpp:13002
MS_peptide_MD_Score
MS_peptide_MD_Score
peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
Definition: cv.hpp:8115
UNIMOD_Phe__Met
UNIMOD_Phe__Met
Phe->Met: Phe->Met substitution.
Definition: cv.hpp:11544
UO_newton
UO_newton
newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass...
Definition: cv.hpp:14127
MS_xi_score
MS_xi_score
xi:score: The xi result 'Score'.
Definition: cv.hpp:8088
UNIMOD_Trp__Gln
UNIMOD_Trp__Gln
Trp->Gln: Trp->Gln substitution.
Definition: cv.hpp:11952
UO_milligram_per_square_meter
UO_milligram_per_square_meter
milligram per square meter: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical su...
Definition: cv.hpp:14724
UNIMOD_Methylthio
UNIMOD_Methylthio
Methylthio: Beta-methylthiolation.
Definition: cv.hpp:9459
UO_luminance_unit
UO_luminance_unit
luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given are...
Definition: cv.hpp:13962
UNIMOD_HexNAc_1_dHex_1_
UNIMOD_HexNAc_1_dHex_1_
HexNAc(1)dHex(1): HexNAc1dHex1.
Definition: cv.hpp:9651
MS_peptide_attribute
MS_peptide_attribute
peptide attribute: A nonphysical attribute that can be used to describe a peptide.
Definition: cv.hpp:3363
MS_enhanced_multiply_charged_spectrum
MS_enhanced_multiply_charged_spectrum
enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared t...
Definition: cv.hpp:3054
MS_TopPIC_spectral_cutoff_value
MS_TopPIC_spectral_cutoff_value
TopPIC:spectral cutoff value: Spectrum-level cutoff value for filtering identified proteoform spectru...
Definition: cv.hpp:9183
MS_quantification_information
MS_quantification_information
quantification information: Quantification information.
Definition: cv.hpp:3846
MS_Progenesis_QI
MS_Progenesis_QI
Progenesis QI: Metabolomics analysis software for LC-MS data from Nonlinear Dynamics.
Definition: cv.hpp:9060
MS_ion_to_photon_detector
MS_ion_to_photon_detector
ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that...
Definition: cv.hpp:1620
MS_AP_MALDI
MS_AP_MALDI
AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser de...
Definition: cv.hpp:1131
UNIMOD_Gly__Xle
UNIMOD_Gly__Xle
Gly->Xle: Gly->Leu/Ile substitution.
Definition: cv.hpp:11571
MS_microflex_II
MS_microflex_II
microflex II: Bruker Daltonics' microflex II: MALDI TOF.
Definition: cv.hpp:5055
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE
high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentr...
Definition: cv.hpp:1230
MS_SEQUEST_PeptideSp
MS_SEQUEST_PeptideSp
SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
Definition: cv.hpp:4074
MS_SIM_spectrum
MS_SIM_spectrum
SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of ...
Definition: cv.hpp:2379
UNIMOD_QTGG
UNIMOD_QTGG
QTGG: SUMOylation leaving GlnThrGlyGly.
Definition: cv.hpp:12099
UNIMOD_Hex_3_HexNAc_1_Pent_1_
UNIMOD_Hex_3_HexNAc_1_Pent_1_
Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
Definition: cv.hpp:9687
MS_p_value
MS_p_value
p-value: P-value as result of one of the processing steps described. Specify in the description,...
Definition: cv.hpp:6666
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of ...
Definition: cv.hpp:5265
MS_Comet_spscore
MS_Comet_spscore
Comet:spscore: The Comet result 'SpScore'.
Definition: cv.hpp:7212
MS_mass_analyzer_attribute
MS_mass_analyzer_attribute
mass analyzer attribute: Analyzer properties that are associated with a value.
Definition: cv.hpp:2040
MS_electron_transfer_dissociation
MS_electron_transfer_dissociation
electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmen...
Definition: cv.hpp:2448
MS_2E_Mass_Spectrum_OBSOLETE
MS_2E_Mass_Spectrum_OBSOLETE
2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value ...
Definition: cv.hpp:1524
MS_trap_type_collision_induced_dissociation
MS_trap_type_collision_induced_dissociation
trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a t...
Definition: cv.hpp:7866
UNIMOD_Lys__Gly
UNIMOD_Lys__Gly
Lys->Gly: Lys->Gly substitution.
Definition: cv.hpp:11658
UNIMOD_Delta_H_4_C_3_O_1_
UNIMOD_Delta_H_4_C_3_O_1_
Delta:H(4)C(3)O(1): Acrolein addition +56.
Definition: cv.hpp:9771
UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_
UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_
Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:12558
MS_Compass_for_micrOTOF
MS_Compass_for_micrOTOF
Compass for micrOTOF: Bruker Compass for micrOTOF software.
Definition: cv.hpp:2811
MS_peptide_sequence_level_p_value
MS_peptide_sequence_level_p_value
peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identi...
Definition: cv.hpp:6024
UNIMOD_Hex_2_HexNAc_4_NeuAc_1_
UNIMOD_Hex_2_HexNAc_4_NeuAc_1_
Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
Definition: cv.hpp:13158
MS_photodissociation
MS_photodissociation
photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one...
Definition: cv.hpp:1881
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptid...
Definition: cv.hpp:5388
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_
Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
Definition: cv.hpp:13401
MS_autoflex_III_TOF_TOF_smartbeam
MS_autoflex_III_TOF_TOF_smartbeam
autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
Definition: cv.hpp:5061
UNIMOD_Bromo
UNIMOD_Bromo
Bromo: Bromination.
Definition: cv.hpp:9978
MS_PROTEINEER
MS_PROTEINEER
PROTEINEER: Bruker PROTEINEER software.
Definition: cv.hpp:2856
MS_LCMS_2010EV
MS_LCMS_2010EV
LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
Definition: cv.hpp:2475
UNIMOD_thioacylPA
UNIMOD_thioacylPA
thioacylPA: Membrane protein extraction.
Definition: cv.hpp:11223
MS_distinct_peptide_level_combined_FDRScore
MS_distinct_peptide_level_combined_FDRScore
distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identificatio...
Definition: cv.hpp:7533
UNIMOD_Xlink_DSSO_176_
UNIMOD_Xlink_DSSO_176_
Xlink:DSSO[176]: Water-quenched monolink of DSSO crosslinker.
Definition: cv.hpp:13509
MS_selected_reaction_monitoring_chromatogram
MS_selected_reaction_monitoring_chromatogram
selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measureme...
Definition: cv.hpp:4818
MS_frag__w_ion
MS_frag__w_ion
frag: w ion: Fragmentation information, type of product: w ion.
Definition: cv.hpp:4146
MS_peptide_ratio
MS_peptide_ratio
peptide ratio: Peptide ratio.
Definition: cv.hpp:3855
MS_UltroTOF_Q
MS_UltroTOF_Q
UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
Definition: cv.hpp:5022
UO_gram_per_milliliter
UO_gram_per_milliliter
gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the ...
Definition: cv.hpp:14316
MS_TOPP_SpectraFilterWindowMower
MS_TOPP_SpectraFilterWindowMower
TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak ...
Definition: cv.hpp:6885
UNIMOD_dHex_1_Hex_2_HexA_1_
UNIMOD_dHex_1_Hex_2_HexA_1_
dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
Definition: cv.hpp:12423
UO_catalytic_activity_unit
UO_catalytic_activity_unit
catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst...
Definition: cv.hpp:14160
MS_peptide_sequence_level_global_confidence
MS_peptide_sequence_level_global_confidence
peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides o...
Definition: cv.hpp:7839
MS_ProteoGrouper_PAG_score
MS_ProteoGrouper_PAG_score
ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mz...
Definition: cv.hpp:7155
MS_electron_ionization
MS_electron_ionization
electron ionization: The ionization of an atom or molecule by electrons that are typically accelerate...
Definition: cv.hpp:1740
UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_
UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_
dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:12717
CVID_Unknown
CVID_Unknown
Definition: cv.hpp:114
UNIMOD_NDA
UNIMOD_NDA
NDA: Naphthalene-2,3-dicarboxaldehyde.
Definition: cv.hpp:10266
MS_fluorescence_detector
MS_fluorescence_detector
fluorescence detector: A detector using a fluorescent signal after excitation with light.
Definition: cv.hpp:7374
MS_Paragon_confidence
MS_Paragon_confidence
Paragon:confidence: The Paragon result 'Confidence'.
Definition: cv.hpp:3960
MS_OpenXQuest
MS_OpenXQuest
OpenXQuest: Cross-Linking MS search engine.
Definition: cv.hpp:8478
MS_MassHunter_Metabolite_ID
MS_MassHunter_Metabolite_ID
MassHunter Metabolite ID: Software for identification of metabolites.
Definition: cv.hpp:2715
UNIMOD_Label_13C_2_15N_2_
UNIMOD_Label_13C_2_15N_2_
Label:13C(2)15N(2): 13C(2) 15N(2).
Definition: cv.hpp:13404
MS_PEFF_format
MS_PEFF_format
PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
Definition: cv.hpp:4785
MS_OpenXQuest_xcorr_xlink
MS_OpenXQuest_xcorr_xlink
OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.
Definition: cv.hpp:8505
UO_dosage_unit
UO_dosage_unit
dosage unit: A concentration unit which is a standard measure of the amount of a toxic or pharmaceuti...
Definition: cv.hpp:14727
MS_CLINPROT
MS_CLINPROT
CLINPROT: Bruker CLINPROT software.
Definition: cv.hpp:2793
UNIMOD_Label_13C_3_
UNIMOD_Label_13C_3_
Label:13C(3): 13C3 label for SILAC.
Definition: cv.hpp:12102
UNIMOD_Biotin_Thermo_21345
UNIMOD_Biotin_Thermo_21345
Biotin:Thermo-21345: Was PentylamineBiotin.
Definition: cv.hpp:10959
MS_TOPP_OMSSAAdapter
MS_TOPP_OMSSAAdapter
TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
Definition: cv.hpp:6999
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are...
Definition: cv.hpp:5673
MS_massWolf
MS_massWolf
massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was origin...
Definition: cv.hpp:2220
MS_TMT_reagent_131
MS_TMT_reagent_131
TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
Definition: cv.hpp:8316
MS_higher_energy_beam_type_collision_induced_dissociation
MS_higher_energy_beam_type_collision_induced_dissociation
higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wher...
Definition: cv.hpp:7893
MS_postacceleration_detector
MS_postacceleration_detector
postacceleration detector: A detector in which the charged particles are accelerated to a high veloci...
Definition: cv.hpp:1626
MS_electrospray_supply_type
MS_electrospray_supply_type
electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
Definition: cv.hpp:6243
UNIMOD_HexNAc_5_
UNIMOD_HexNAc_5_
HexNAc(5): HexNAc(5).
Definition: cv.hpp:12948
UNIMOD_PyridoxalPhosphateH2
UNIMOD_PyridoxalPhosphateH2
PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linka...
Definition: cv.hpp:12264
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_
Hex(4)HexNAc(4)NeuGc(1): Hex(4) HexNAc(4) NeuGc.
Definition: cv.hpp:13719
PEFF_Signal
PEFF_Signal
Signal: Sequence range of signal peptide.
Definition: cv.hpp:237
MS_API_5000
MS_API_5000
API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
Definition: cv.hpp:2634
MS_EE_OBSOLETE
MS_EE_OBSOLETE
EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state,...
Definition: cv.hpp:1203
MS_Experimental_information_has_been_refined_since_this_experiment_was_originally_made_publicly_available
MS_Experimental_information_has_been_refined_since_this_experiment_was_originally_made_publicly_available
Experimental information has been refined since this experiment was originally made publicly availabl...
Definition: cv.hpp:9024
MS_REMPI
MS_REMPI
REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cro...
Definition: cv.hpp:1356
MS_HiRes_MALDI
MS_HiRes_MALDI
HiRes MALDI: IonSpec HiResMALDI MS.
Definition: cv.hpp:855
MS_particle_beam
MS_particle_beam
particle beam: Method for generating ions from a solution of an analyte.
Definition: cv.hpp:477
MS_source_attribute
MS_source_attribute
source attribute: Property of a source device that need a value.
Definition: cv.hpp:2046
UNIMOD_Trp__Kynurenin
UNIMOD_Trp__Kynurenin
Trp->Kynurenin: Tryptophan oxidation to kynurenin.
Definition: cv.hpp:10002
MS_CRM_chromatogram_OBSOLETE
MS_CRM_chromatogram_OBSOLETE
CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an ...
Definition: cv.hpp:4827
MS_Thermo_Scientific_instrument_model
MS_Thermo_Scientific_instrument_model
Thermo Scientific instrument model: Thermo Scientific instrument model.
Definition: cv.hpp:2082
UNIMOD_dHex_4_Hex_2_HexNAc_3_
UNIMOD_dHex_4_Hex_2_HexNAc_3_
dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
Definition: cv.hpp:13209
UNIMOD_Hex_4_HexNAc_5_NeuAc_1_
UNIMOD_Hex_4_HexNAc_5_NeuAc_1_
Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
Definition: cv.hpp:12738
UNIMOD_Crotonyl
UNIMOD_Crotonyl
Crotonyl: Crotonylation.
Definition: cv.hpp:12216
MS_site_global_FDR
MS_site_global_FDR
site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modi...
Definition: cv.hpp:7467
UNIMOD_Asn__Asp
UNIMOD_Asn__Asp
Asn->Asp: Asn->Asp substitution.
Definition: cv.hpp:10617
MS_ion__OBSOLETE
MS_ion__OBSOLETE
ion?: An atomic or molecular species having a net positive or negative electric charge.
Definition: cv.hpp:1668
MS_param__a_ion_NH3_DEPRECATED
MS_param__a_ion_NH3_DEPRECATED
param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammoni...
Definition: cv.hpp:3897
MS_electron_affinity_OBSOLETE
MS_electron_affinity_OBSOLETE
electron affinity: The electron affinity of M is the minimum energy required for the process M- ?...
Definition: cv.hpp:1020
UNIMOD_mTRAQ_13C_3_15N_1_
UNIMOD_mTRAQ_13C_3_15N_1_
mTRAQ:13C(3)15N(1): MTRAQ medium.
Definition: cv.hpp:11055
UNIMOD_dHex_3_Hex_3_HexNAc_1_
UNIMOD_dHex_3_Hex_3_HexNAc_1_
dHex(3)Hex(3)HexNAc(1): DHex(3) Hex(3) HexNAc.
Definition: cv.hpp:13680
UNIMOD_Lys__Trp
UNIMOD_Lys__Trp
Lys->Trp: Lys->Trp substitution.
Definition: cv.hpp:11673
UNIMOD_dHex_1_Hex_2_HexNAc_1_NeuAc_2_
UNIMOD_dHex_1_Hex_2_HexNAc_1_NeuAc_2_
dHex(1)Hex(2)HexNAc(1)NeuAc(2): DHex Hex(2) HexNAc NeuAc(2).
Definition: cv.hpp:13689
MS_Associated_raw_file_URI
MS_Associated_raw_file_URI
Associated raw file URI: URI of one raw data file associated to the PRIDE experiment (maybe through a...
Definition: cv.hpp:8961
UNIMOD_Thr__Glu
UNIMOD_Thr__Glu
Thr->Glu: Thr->Glu substitution.
Definition: cv.hpp:11868
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
Definition: cv.hpp:13257
UNIMOD_Delta_H_10_C_8_O_1_
UNIMOD_Delta_H_10_C_8_O_1_
Delta:H(10)C(8)O(1): Crotonaldehyde-derived dimethyl-FDP-lysine.
Definition: cv.hpp:13626
UNIMOD_Ser__Pro
UNIMOD_Ser__Pro
Ser->Pro: Ser->Pro substitution.
Definition: cv.hpp:10710
UNIMOD_Cation_Ni_II_
UNIMOD_Cation_Ni_II_
Cation:Ni[II]: Replacement of 2 protons by nickel.
Definition: cv.hpp:11196
UNIMOD_Hex_2_
UNIMOD_Hex_2_
Hex(2): Lactosylation.
Definition: cv.hpp:10329
UNIMOD_SUMO3549
UNIMOD_SUMO3549
SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
Definition: cv.hpp:11220
UNIMOD_dHex_2_Hex_2_HexNAc_5_
UNIMOD_dHex_2_Hex_2_HexNAc_5_
dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
Definition: cv.hpp:13251
MS_MS_GF_RawScore
MS_MS_GF_RawScore
MS-GF:RawScore: MS-GF raw score.
Definition: cv.hpp:6597
MS_proteoform_level_global_FDR_threshold
MS_proteoform_level_global_FDR_threshold
proteoform-level global FDR threshold: Threshold for the global false discovery rate of proteoforms.
Definition: cv.hpp:9153
UNIMOD_Asn__Xle
UNIMOD_Asn__Xle
Asn->Xle: Asn->Leu/Ile substitution.
Definition: cv.hpp:10620
MS_X_Tandem_xml_format
MS_X_Tandem_xml_format
X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
Definition: cv.hpp:4611
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:11298
MS_sampled_noise_intensity_array
MS_sampled_noise_intensity_array
sampled noise intensity array: A data array of intensity values for the amplitude of noise variation ...
Definition: cv.hpp:8652
UO_microgray
UO_microgray
microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
Definition: cv.hpp:14223
MS_mass_resolving_power_OBSOLETE
MS_mass_resolving_power_OBSOLETE
mass resolving power: In a mass spectrum, the observed mass divided by the difference between two mas...
Definition: cv.hpp:1104
UNIMOD_HNE_Delta_H_2_
UNIMOD_HNE_Delta_H_2_
HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
Definition: cv.hpp:9972
MS_product_ion_m_z_error
MS_product_ion_m_z_error
product ion m/z error: The product ion m/z error.
Definition: cv.hpp:4113
UNIMOD_a_type_ion
UNIMOD_a_type_ion
a-type-ion: ISD a-series (C-Term).
Definition: cv.hpp:9645
MS_EMT
MS_EMT
EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged partic...
Definition: cv.hpp:660
MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count
MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count
ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spe...
Definition: cv.hpp:5241
MS_BioTOF
MS_BioTOF
BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
Definition: cv.hpp:5016
MS_translation_start_codons
MS_translation_start_codons
translation start codons: The translation start codons used to translate the nucleotides to amino aci...
Definition: cv.hpp:4629
MS_QTRAP_6500
MS_QTRAP_6500
QTRAP 6500: SCIEX QTRAP 6500.
Definition: cv.hpp:8196
MS_electric_field_strength
MS_electric_field_strength
electric field strength: The magnitude of the force per unit charge at a given point in space.
Definition: cv.hpp:1485
UNIMOD_Arg__Asp
UNIMOD_Arg__Asp
Arg->Asp: Arg->Asp substitution.
Definition: cv.hpp:11823
MS_enhanced_resolution_scan_OBSOLETE
MS_enhanced_resolution_scan_OBSOLETE
enhanced resolution scan: Scan with enhanced resolution.
Definition: cv.hpp:3060
MS_Empower
MS_Empower
Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5796
MS_ion_reaction_OBSOLETE
MS_ion_reaction_OBSOLETE
ion reaction: Chemical transformation involving an ion.
Definition: cv.hpp:1893
MS_PAnalyzer_conclusive_protein
MS_PAnalyzer_conclusive_protein
PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct,...
Definition: cv.hpp:7086
MS_Progenesis_confidence_score
MS_Progenesis_confidence_score
Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
Definition: cv.hpp:6096
UNIMOD_Hex_1_HexNAc_1_NeuGc_2_
UNIMOD_Hex_1_HexNAc_1_NeuGc_2_
Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
Definition: cv.hpp:12921
UNIMOD_Sulfo
UNIMOD_Sulfo
Sulfo: O-Sulfonation.
Definition: cv.hpp:9462
MS_DESI
MS_DESI
DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization meth...
Definition: cv.hpp:6477
UNIMOD_dHex_3_Hex_3_HexNAc_2_
UNIMOD_dHex_3_Hex_3_HexNAc_2_
dHex(3)Hex(3)HexNAc(2): DHex(3) Hex(3) HexNAc(2).
Definition: cv.hpp:13692
UNIMOD_HexNAc_1_Kdn_2_
UNIMOD_HexNAc_1_Kdn_2_
HexNAc(1)Kdn(2): HexNAc Kdn(2) —OR— Hex(2) HexNAc HexA.
Definition: cv.hpp:12792
MS_ion_injection_time
MS_ion_injection_time
ion injection time: The length of time spent filling an ion trapping device.
Definition: cv.hpp:3489
UNIMOD_dHex_1_Hex_6_HexNAc_3_
UNIMOD_dHex_1_Hex_6_HexNAc_3_
dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
Definition: cv.hpp:12612
UO_microsecond
UO_microsecond
microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
Definition: cv.hpp:13890
MS_PSM_is_used_for_peptide_level_scoring
MS_PSM_is_used_for_peptide_level_scoring
PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
Definition: cv.hpp:7959
UO_cubic_centimeter
UO_cubic_centimeter
cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3],...
Definition: cv.hpp:14094
MS_TIQAM
MS_TIQAM
TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring ex...
Definition: cv.hpp:3477
MS_LCMS_2010A
MS_LCMS_2010A
LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
Definition: cv.hpp:2478
UNIMOD_Thr__Lys
UNIMOD_Thr__Lys
Thr->Lys: Thr->Lys substitution.
Definition: cv.hpp:10737
MS_ionization_mode_OBSOLETE
MS_ionization_mode_OBSOLETE
ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
Definition: cv.hpp:288
UNIMOD_HexNAc_1_NeuAc_1_
UNIMOD_HexNAc_1_NeuAc_1_
HexNAc(1)NeuAc(1): HexNAc NeuAc.
Definition: cv.hpp:12387
MS_TOPP_peak_picker
MS_TOPP_peak_picker
TOPP peak picker: Peak picker component of the TOPP software.
Definition: cv.hpp:6849
MS_predicted_retention_time
MS_predicted_retention_time
predicted retention time: A time interval from the start of chromatography when an analyte exits a ch...
Definition: cv.hpp:3396
MS_frag__a_ion___H2O
MS_frag__a_ion___H2O
frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
Definition: cv.hpp:4134
MS_inlet_temperature
MS_inlet_temperature
inlet temperature: The temperature of the inlet of a mass spectrometer.
Definition: cv.hpp:6567
UNIMOD_FMNH
UNIMOD_FMNH
FMNH: Flavin mononucleotide.
Definition: cv.hpp:10140
MS_decoy_SRM_transition
MS_decoy_SRM_transition
decoy SRM transition: A transition not expected to be present in the sample and used to calculate sta...
Definition: cv.hpp:6462
UNIMOD_Hex_5_
UNIMOD_Hex_5_
Hex(5): Hex(5).
Definition: cv.hpp:12846
MS_Varian_instrument_model
MS_Varian_instrument_model
Varian instrument model: Varian instrument model.
Definition: cv.hpp:2067
MS_QSTAR
MS_QSTAR
QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
Definition: cv.hpp:936
UNIMOD_Hydroxymethyl
UNIMOD_Hydroxymethyl
Hydroxymethyl: Hydroxymethyl.
Definition: cv.hpp:10155
MS_TopMG_proteoform_level_cutoff_value
MS_TopMG_proteoform_level_cutoff_value
TopMG:proteoform-level cutoff value: Proteoform-level cutoff value for filtering identified proteofor...
Definition: cv.hpp:9249
MS_param__y_ion_NH3_DEPRECATED
MS_param__y_ion_NH3_DEPRECATED
param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammoni...
Definition: cv.hpp:3912
MS_TOF_Total_Path_Length
MS_TOF_Total_Path_Length
TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer...
Definition: cv.hpp:327
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_
Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
Definition: cv.hpp:13146
MS_param__d_ion
MS_param__d_ion
param: d ion: Parameter information, type of product: side chain loss d ion.
Definition: cv.hpp:4200
UNIMOD_Hex_2_Pent_2_Me_1_
UNIMOD_Hex_2_Pent_2_Me_1_
Hex(2)Pent(2)Me(1): Hex(2) Pent(2) Me.
Definition: cv.hpp:13653
MS_ion_energy_loss_spectrum_OBSOLETE
MS_ion_energy_loss_spectrum_OBSOLETE
ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a...
Definition: cv.hpp:1851
MS_confidence_score
MS_confidence_score
confidence score: Result of quality estimation: confidence score.
Definition: cv.hpp:4014
MS_LipidBlast
MS_LipidBlast
LipidBlast: LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-sil...
Definition: cv.hpp:9336
UNIMOD_Label_2H_3__Oxidation
UNIMOD_Label_2H_3__Oxidation
Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
Definition: cv.hpp:12231
MS_feature_attribute
MS_feature_attribute
feature attribute: Attribute describing a feature.
Definition: cv.hpp:5898
MS_ANOVA_test
MS_ANOVA_test
ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value,...
Definition: cv.hpp:6663
MS_ProteomeDiscoverer_Target_FDR_Strict
MS_ProteomeDiscoverer_Target_FDR_Strict
ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR,...
Definition: cv.hpp:5406
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
Definition: cv.hpp:6693
UNIMOD_SUMO2135
UNIMOD_SUMO2135
SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
Definition: cv.hpp:11217
MS_SEQUEST_TIC
MS_SEQUEST_TIC
SEQUEST:TIC: SEQUEST total ion current.
Definition: cv.hpp:4527
MS_EIEIO_OBSOLETE
MS_EIEIO_OBSOLETE
EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the...
Definition: cv.hpp:1209
MS_SpectraST_discriminant_score_F
MS_SpectraST_discriminant_score_F
SpectraST:discriminant score F: SpectraST spectrum score.
Definition: cv.hpp:4656
MS_Discoverer_MSF_format
MS_Discoverer_MSF_format
Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
Definition: cv.hpp:5091
MS_selected_ion_detection_OBSOLETE
MS_selected_ion_detection_OBSOLETE
selected ion detection: Please see Single Ion Monitoring.
Definition: cv.hpp:588
MS_6545_Q_TOF_LC_MS
MS_6545_Q_TOF_LC_MS
6545 Q-TOF LC/MS: The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8793
MS_peptide_exon_count
MS_peptide_exon_count
peptide exon count: The number of exons to which the peptide has been mapped.
Definition: cv.hpp:8379
MS_modification_motif
MS_modification_motif
modification motif: The regular expression describing the sequence motif for a modification.
Definition: cv.hpp:6039
MS_Asp_N
MS_Asp_N
Asp-N: Endoproteinase Asp-N.
Definition: cv.hpp:4320
MS_PSM_level_e_value
MS_PSM_level_e_value
PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
Definition: cv.hpp:7509
UNIMOD_AHA_Alkyne_KDDDD
UNIMOD_AHA_Alkyne_KDDDD
AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
Definition: cv.hpp:11283
UNIMOD_Hex_2_HexNAc_3_NeuGc_2_
UNIMOD_Hex_2_HexNAc_3_NeuGc_2_
Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
Definition: cv.hpp:13227
MS_SNAP
MS_SNAP
SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured s...
Definition: cv.hpp:6426
UNIMOD_Hex_6_HexNAc_3_Phos_1_
UNIMOD_Hex_6_HexNAc_3_Phos_1_
Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
Definition: cv.hpp:12570
MS_MaxQuant
MS_MaxQuant
MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass sp...
Definition: cv.hpp:5151
MS_decoy_DB_from_nr_OBSOLETE
MS_decoy_DB_from_nr_OBSOLETE
decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
Definition: cv.hpp:4275
MS_TOPP_spectra_filter
MS_TOPP_spectra_filter
TOPP spectra filter: Spectra filter component of the TOPP software.
Definition: cv.hpp:6858
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_
Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
Definition: cv.hpp:13311
UNIMOD_Gln__Tyr
UNIMOD_Gln__Tyr
Gln->Tyr: Gln->Tyr substitution.
Definition: cv.hpp:11817
MS_Phenyx_MinPepzscore
MS_Phenyx_MinPepzscore
Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identific...
Definition: cv.hpp:4560
MS_DFS
MS_DFS
DFS: Thermo Scientific DFS HR GC-MS.
Definition: cv.hpp:2592
MS_proportional_OBSOLETE
MS_proportional_OBSOLETE
proportional: When resolution is proportional with respect to m/z.
Definition: cv.hpp:582
MS_frag__internal_ya_ion
MS_frag__internal_ya_ion
frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
Definition: cv.hpp:4506
PEFF_Processed
PEFF_Processed
Processed: Processed Molecule.
Definition: cv.hpp:204
MS_mzIdentML_format
MS_mzIdentML_format
mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI....
Definition: cv.hpp:6669
MS_Agilent_software
MS_Agilent_software
Agilent software: Agilent software for data acquisition and analysis.
Definition: cv.hpp:2736
UNIMOD_Xlink_DTSSP_88_
UNIMOD_Xlink_DTSSP_88_
Xlink:DTSSP[88]: Cleaved and reduced DSP/DTSSP crosslinker.
Definition: cv.hpp:9612
UNIMOD_dHex_2_Hex_5_HexNAc_4_
UNIMOD_dHex_2_Hex_5_HexNAc_4_
dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
Definition: cv.hpp:12708
MS_6330_Ion_Trap_LC_MS
MS_6330_Ion_Trap_LC_MS
6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:2022
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_
dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
Definition: cv.hpp:12567
UO_fold_dilution
UO_fold_dilution
fold dilution: A unit that is the ratio of concentration of two solutions of interest,...
Definition: cv.hpp:14763
MS_TopMG_spectral_cutoff_type
MS_TopMG_spectral_cutoff_type
TopMG:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum m...
Definition: cv.hpp:9240
MS_software_vendor
MS_software_vendor
software vendor: Software vendor role.
Definition: cv.hpp:4221
MS_Supported_dataset_by_repository
MS_Supported_dataset_by_repository
Supported dataset by repository: The PX dataset is supported by and is available through the submissi...
Definition: cv.hpp:8991
MS_q
MS_q
q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so a...
Definition: cv.hpp:1350
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:12990
UO_plaque_forming_unit
UO_plaque_forming_unit
plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given vo...
Definition: cv.hpp:14430
UNIMOD_His__Cys
UNIMOD_His__Cys
His->Cys: His->Cys substitution.
Definition: cv.hpp:11598
MS_HCTultra_PTM
MS_HCTultra_PTM
HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
Definition: cv.hpp:2766
MS_apex_ultra
MS_apex_ultra
apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:2754
UNIMOD_TMPP_Ac_13C_9_
UNIMOD_TMPP_Ac_13C_9_
TMPP-Ac:13C(9): Heavy tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester ...
Definition: cv.hpp:13800
MS_ISQ
MS_ISQ
ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
Definition: cv.hpp:6138
MS_linear_OBSOLETE
MS_linear_OBSOLETE
linear: The mass scan is done in linear mode.
Definition: cv.hpp:600
MS_CNBr
MS_CNBr
CNBr: Cyanogen bromide.
Definition: cv.hpp:4329
UNIMOD_MurNAc
UNIMOD_MurNAc
MurNAc: N-Acetylmuramic acid.
Definition: cv.hpp:12312
MS_aminoxyTMT_quantitation_analysis
MS_aminoxyTMT_quantitation_analysis
aminoxyTMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive ami...
Definition: cv.hpp:8694
UNIMOD_NP40
UNIMOD_NP40
NP40: NP-40 synthetic polymer terminus.
Definition: cv.hpp:13446
MS_count_of_identified_clusters
MS_count_of_identified_clusters
count of identified clusters: The number of protein clusters that have been identified,...
Definition: cv.hpp:7668
MS_Conversion_to_dta
MS_Conversion_to_dta
Conversion to dta: Conversion to dta format.
Definition: cv.hpp:2892
UO_watt_per_meter_kelvin
UO_watt_per_meter_kelvin
watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
Definition: cv.hpp:14592
MS_NIST_MSPepSearch
MS_NIST_MSPepSearch
NIST MSPepSearch: Search tool of the NIST (National Institute of Standards and Technology) for spectr...
Definition: cv.hpp:8670
MS_TopPIC_min_shift
MS_TopPIC_min_shift
TopPIC:min shift: Minimum value of the mass shift (in Dalton) of an unexpected modification.
Definition: cv.hpp:9174
MS_adduct_ion_mass
MS_adduct_ion_mass
adduct ion mass: Mass of an adduct formation specified by the given value.
Definition: cv.hpp:8850
MS_mass_table_source
MS_mass_table_source
mass table source: Children of this term specify the source of the mass table used.
Definition: cv.hpp:4443
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr paramete...
Definition: cv.hpp:5535
MS_MaxQuant_PTM_Delta_Score_threshold
MS_MaxQuant_PTM_Delta_Score_threshold
MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
Definition: cv.hpp:8148
UO_yocto
UO_yocto
yocto: A prefix in the metric system denoting a factor of 10 to the power of -24.
Definition: cv.hpp:14715
UNIMOD_glucosone
UNIMOD_glucosone
glucosone: Condensation product of glucosone.
Definition: cv.hpp:11244
UNIMOD_maleimide3
UNIMOD_maleimide3
maleimide3: Maleimide-3-saccharide.
Definition: cv.hpp:11226
MS_ion_attribute_OBSOLETE
MS_ion_attribute_OBSOLETE
ion attribute: Ion properties that are associated with a value.
Definition: cv.hpp:2127
MS_constant_neutral_gain_scan_OBSOLETE
MS_constant_neutral_gain_scan_OBSOLETE
constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
Definition: cv.hpp:1533
MS_modification_rescoring_false_localization_rate
MS_modification_rescoring_false_localization_rate
modification rescoring:false localization rate: Mod position score: false localization rate.
Definition: cv.hpp:7971
MS_quick_and_dirty_MALDI_sample_preparation
MS_quick_and_dirty_MALDI_sample_preparation
quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix ha...
Definition: cv.hpp:6408
UO_volt_second_per_square_centimeter
UO_volt_second_per_square_centimeter
volt-second per square centimeter: An electrical mobility unit which is equal to one volt second per ...
Definition: cv.hpp:14814
MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra
MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra
Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra ...
Definition: cv.hpp:8409
MS_6320_Ion_Trap_LC_MS
MS_6320_Ion_Trap_LC_MS
6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:2019
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5568
PEFF_XRef
PEFF_XRef
XRef: Cross-reference to an external resource.
Definition: cv.hpp:231
UNIMOD_Arg__Phe
UNIMOD_Arg__Phe
Arg->Phe: Arg->Phe substitution.
Definition: cv.hpp:11838
MS_PIA_protein_inference_used_score
MS_PIA_protein_inference_used_score
PIA:protein inference used score: The used base score for the protein inference using PIA.
Definition: cv.hpp:7644
UNIMOD_Gly__Tyr
UNIMOD_Gly__Tyr
Gly->Tyr: Gly->Tyr substitution.
Definition: cv.hpp:11592
UO_parts_per_thousand
UO_parts_per_thousand
parts per thousand: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:14301
MS_micrOTOFcontrol
MS_micrOTOFcontrol
micrOTOFcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2847
UNIMOD_Label_2H_9_13C_6_15N_2_
UNIMOD_Label_2H_9_13C_6_15N_2_
Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
Definition: cv.hpp:10821
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr para...
Definition: cv.hpp:5541
UO_milligram_per_liter
UO_milligram_per_liter
milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by...
Definition: cv.hpp:14616
UO_substance_unit
UO_substance_unit
substance unit: A unit which is a standardised quantity of an element or compound with uniform compos...
Definition: cv.hpp:13821
PEFF_Transit
PEFF_Transit
Transit: Sequence range of transit peptide.
Definition: cv.hpp:240
MS_ASAPRatio
MS_ASAPRatio
ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2...
Definition: cv.hpp:8175
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
Definition: cv.hpp:5652
MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold
MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold
ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that...
Definition: cv.hpp:6717
MS_file_format_conversion
MS_file_format_conversion
file format conversion: Conversion of one file format to another.
Definition: cv.hpp:2196
UNIMOD_Xlink_DFDNB
UNIMOD_Xlink_DFDNB
Xlink:DFDNB: Intact DFDNB crosslinker.
Definition: cv.hpp:10977
UO_meter
UO_meter
meter: A length unit which is equal to the length of the path traveled by light in vacuum during a ti...
Definition: cv.hpp:13827
MS_spectrum_identification_result_details
MS_spectrum_identification_result_details
spectrum identification result details: This subsection describes terms which can describe details of...
Definition: cv.hpp:4614
MS_6130_Quadrupole_LC_MS
MS_6130_Quadrupole_LC_MS
6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:2007
UNIMOD_Xlink_DTBP_87_
UNIMOD_Xlink_DTBP_87_
Xlink:DTBP[87]: Cleaved and reduced DTBP crosslinker.
Definition: cv.hpp:9951
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5553
MS_Chymotrypsin
MS_Chymotrypsin
Chymotrypsin: Enzyme chymotrypsin.
Definition: cv.hpp:4326
MS_SRM_feature_level_quantitation
MS_SRM_feature_level_quantitation
SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
Definition: cv.hpp:7290
MS_four_sample_run
MS_four_sample_run
four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
Definition: cv.hpp:5877
UNIMOD_Ub_amide
UNIMOD_Ub_amide
Ub-amide: Ub amide probe addition.
Definition: cv.hpp:12030
UNIMOD_His__Asp
UNIMOD_His__Asp
His->Asp: His->Asp substitution.
Definition: cv.hpp:9996
MS_OMEGA
MS_OMEGA
OMEGA: IonSpec OMEGA MS.
Definition: cv.hpp:909
MS_TODOscoring_model_OBSOLETE
MS_TODOscoring_model_OBSOLETE
TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed gr...
Definition: cv.hpp:3672
UNIMOD_Met__Ser
UNIMOD_Met__Ser
Met->Ser: Met->Ser substitution.
Definition: cv.hpp:11709
MS_protein_group_level_statistical_threshold
MS_protein_group_level_statistical_threshold
protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
Definition: cv.hpp:7908
MS_beam_type_collision_induced_dissociation
MS_beam_type_collision_induced_dissociation
beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a b...
Definition: cv.hpp:1839
MS_PIA
MS_PIA
PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
Definition: cv.hpp:7611
UNIMOD_Hex_1_Pent_1_
UNIMOD_Hex_1_Pent_1_
Hex(1)Pent(1): Hex Pent.
Definition: cv.hpp:12363
UNIMOD_ICPL_13C_6_2H_4_
UNIMOD_ICPL_13C_6_2H_4_
ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
Definition: cv.hpp:11028
MS_identification_parameter
MS_identification_parameter
identification parameter: Identification parameter for the search engine run.
Definition: cv.hpp:8433
UNIMOD_Ser__Met
UNIMOD_Ser__Met
Ser->Met: Ser->Met substitution.
Definition: cv.hpp:11853
MS_PTM_localization_confidence_metric
MS_PTM_localization_confidence_metric
PTM localization confidence metric: Localization confidence metric for a post translational modificat...
Definition: cv.hpp:8067
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:13092
UNIMOD_Hex_3_HexNAc_1_
UNIMOD_Hex_3_HexNAc_1_
Hex(3)HexNAc(1): Hex(3) HexNAc.
Definition: cv.hpp:12783
MS_protein_ratio
MS_protein_ratio
protein ratio: Protein ratio.
Definition: cv.hpp:3861
UNIMOD_Propionyl
UNIMOD_Propionyl
Propionyl: Propionate labeling reagent light form (N-term & K).
Definition: cv.hpp:9513
MS_Dionex_instrument_model
MS_Dionex_instrument_model
Dionex instrument model: Dionex instrument model.
Definition: cv.hpp:2073
MS_Trapper
MS_Trapper
Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML....
Definition: cv.hpp:2268
MS_Finnigan_MAT_instrument_model
MS_Finnigan_MAT_instrument_model
Finnigan MAT instrument model: Finnigan MAT instrument model.
Definition: cv.hpp:2079
UO_grain
UO_grain
grain: An imperial mass unit which is equivalent to 64.798,91 milligrams.
Definition: cv.hpp:14886
MS_collisional_excitation_OBSOLETE
MS_collisional_excitation_OBSOLETE
collisional excitation: The reaction of an ion with a neutral species in which the translational ener...
Definition: cv.hpp:1827
MS_CF_FAB
MS_CF_FAB
CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte...
Definition: cv.hpp:444
MS_DiART_reagent
MS_DiART_reagent
DiART reagent: Deuterium isobaric amine reactive tag labeling reagent.
Definition: cv.hpp:8733
UNIMOD_HexNAc_1_NeuGc_2_
UNIMOD_HexNAc_1_NeuGc_2_
HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
Definition: cv.hpp:12852
MS_esquire_4000
MS_esquire_4000
esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray,...
Definition: cv.hpp:834
MS_quattro_micro
MS_quattro_micro
quattro micro: Waters (triple) quadrupole based micro.
Definition: cv.hpp:939
UNIMOD_dHex_2_Hex_1_HexNAc_3_
UNIMOD_dHex_2_Hex_1_HexNAc_3_
dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
Definition: cv.hpp:12972
MS_TOPP_SpectraMerger
MS_TOPP_SpectraMerger
TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
Definition: cv.hpp:6918
UNIMOD_Hex_2_HexNAc_1_Pent_1_HexA_1_
UNIMOD_Hex_2_HexNAc_1_Pent_1_HexA_1_
Hex(2)HexNAc(1)Pent(1)HexA(1): Hex(2) HexNAc Pent HexA.
Definition: cv.hpp:13659
UNIMOD_sulfo_amino
UNIMOD_sulfo_amino
sulfo+amino: Aminotyrosine with sulfation.
Definition: cv.hpp:11277
MS_QSTAR_Elite
MS_QSTAR_Elite
QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
Definition: cv.hpp:2637
PEFF_AltAC
PEFF_AltAC
AltAC: Alternative Accession Code.
Definition: cv.hpp:216
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS,...
Definition: cv.hpp:5232
MS_custom_unreleased_software_tool
MS_custom_unreleased_software_tool
custom unreleased software tool: A software tool that has not yet been released. The value should des...
Definition: cv.hpp:3084
MS_charge_permutation_reaction_OBSOLETE
MS_charge_permutation_reaction_OBSOLETE
charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in...
Definition: cv.hpp:1818
MS_light_labeled_peptide
MS_light_labeled_peptide
light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usu...
Definition: cv.hpp:3381
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be ...
Definition: cv.hpp:5307
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12978
MS_minimum_information_standard
MS_minimum_information_standard
minimum information standard: A specification of a minimum amount of information needed to reproduce ...
Definition: cv.hpp:3405
MS_LTQ_XL
MS_LTQ_XL
LTQ XL: Thermo Scientific LTQ XL MS.
Definition: cv.hpp:3258
UNIMOD_Hex_2_HexNAc_3_NeuGc_1_
UNIMOD_Hex_2_HexNAc_3_NeuGc_1_
Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
Definition: cv.hpp:13056
UNIMOD_Hex_1_NeuAc_1_
UNIMOD_Hex_1_NeuAc_1_
Hex(1)NeuAc(1): Hex NeuAc —OR— HexNAc Kdn.
Definition: cv.hpp:12378
pwiz::cv::CVTermInfo::parentsPartOf
id_list parentsPartOf
Definition: cv.hpp:14953
UNIMOD_Pentylamine
UNIMOD_Pentylamine
Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
Definition: cv.hpp:10962
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between at...
Definition: cv.hpp:5373
MS_ProteinExtractor_SequestPeptideScoreThreshold
MS_ProteinExtractor_SequestPeptideScoreThreshold
ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold a...
Definition: cv.hpp:4707
UNIMOD_dHex_3_Hex_2_HexNAc_4_Sulf_2_
UNIMOD_dHex_3_Hex_2_HexNAc_4_Sulf_2_
dHex(3)Hex(2)HexNAc(4)Sulf(2): DHex(3) Hex(2) HexNAc(4) Sulf(2).
Definition: cv.hpp:13716
UNIMOD_Deoxy
UNIMOD_Deoxy
Deoxy: Reduction.
Definition: cv.hpp:10239
MS_TOPP_InspectAdapter
MS_TOPP_InspectAdapter
TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
Definition: cv.hpp:6990
MS_minimum_number_of_enzymatic_termini
MS_minimum_number_of_enzymatic_termini
minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be ac...
Definition: cv.hpp:5133
UO_milli_300010009
UO_milli_300010009
milli: A mass unit which is equal to 1/12 the mass of 12C
Definition: cv.hpp:14820
MS_LightSight_Software
MS_LightSight_Software
LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
Definition: cv.hpp:2655
UNIMOD_Hex_4_HexA_1_
UNIMOD_Hex_4_HexA_1_
Hex(4)HexA(1): Hex(4) HexA.
Definition: cv.hpp:13656
UNIMOD_Carboxyethylpyrrole
UNIMOD_Carboxyethylpyrrole
Carboxyethylpyrrole: Carboxyethylpyrrole.
Definition: cv.hpp:13413
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used durin...
Definition: cv.hpp:5424
MS_ProteinLynx_XML_format
MS_ProteinLynx_XML_format
ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
Definition: cv.hpp:5097
UO_activity__of_a_radionuclide__unit
UO_activity__of_a_radionuclide__unit
activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disinteg...
Definition: cv.hpp:14184
MS_SILACAnalyzer
MS_SILACAnalyzer
SILACAnalyzer: Software for SILAC workflow.
Definition: cv.hpp:5907
UNIMOD_Xlink_DSSO_86_
UNIMOD_Xlink_DSSO_86_
Xlink:DSSO[86]: Thiol fragment of DSSO crosslinker.
Definition: cv.hpp:13521
MS_Trypsin
MS_Trypsin
Trypsin: Enzyme trypsin.
Definition: cv.hpp:4179
MS_decoy_DB_accession_regexp
MS_decoy_DB_accession_regexp
decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
Definition: cv.hpp:4251
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_
dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
Definition: cv.hpp:13011
MS_printed_MALDI_matrix_preparation
MS_printed_MALDI_matrix_preparation
printed MALDI matrix preparation: Printed MALDI matrix preparation.
Definition: cv.hpp:3207
UO_ratio_300000190
UO_ratio_300000190
ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
Definition: cv.hpp:14367
MS_experiment_name
MS_experiment_name
experiment name: The name for identifying an experiment.
Definition: cv.hpp:6807
MS_family_member_protein
MS_family_member_protein
family member protein: A protein with significant homology to another protein, but some distinguishin...
Definition: cv.hpp:5190
UO_megabasepair
UO_megabasepair
megabasepair: A unit equal to one million base pairs
Definition: cv.hpp:14784
UNIMOD_Cys__Oxoalanine
UNIMOD_Cys__Oxoalanine
Cys->Oxoalanine: Oxoalanine.
Definition: cv.hpp:10125
MS_mass_spectrometry_imaging
MS_mass_spectrometry_imaging
mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved man...
Definition: cv.hpp:8013
MS_TLF
MS_TLF
TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished b...
Definition: cv.hpp:1416
UNIMOD_Thr__Ala
UNIMOD_Thr__Ala
Thr->Ala: Thr->Ala substitution.
Definition: cv.hpp:10731
UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_
UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_
dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
Definition: cv.hpp:12837
UNIMOD_spermine
UNIMOD_spermine
spermine: Spermine adduct.
Definition: cv.hpp:12351
UNIMOD_dNIC
UNIMOD_dNIC
dNIC: Deuterated Nicotinic Acid.
Definition: cv.hpp:10827
MS_msPrefix_precursor_recalculation
MS_msPrefix_precursor_recalculation
msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection ...
Definition: cv.hpp:3015
UNIMOD_NeuGc
UNIMOD_NeuGc
NeuGc: N-glycoyl neuraminic acid.
Definition: cv.hpp:12126
MS_no_combination
MS_no_combination
no combination: Use this term if only one scan was recorded or there is no information about scans av...
Definition: cv.hpp:3072
MS_amaZon_X
MS_amaZon_X
amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:5043
UNIMOD_Unknown_306
UNIMOD_Unknown_306
Unknown:306: Unidentified modification of 306.0952 found in open search.
Definition: cv.hpp:13776
UNIMOD_TMT6plex
UNIMOD_TMT6plex
TMT6plex: Sixplex Tandem Mass Tag®.
Definition: cv.hpp:10872
UNIMOD_Label_2H_4_13C_1_
UNIMOD_Label_2H_4_13C_1_
Label:2H(4)13C(1): Label:2H(4)13C(1).
Definition: cv.hpp:12114
MS_ProteomeDiscoverer_max_number_neutral_loss_modifications
MS_ProteomeDiscoverer_max_number_neutral_loss_modifications
ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifi...
Definition: cv.hpp:7425
PEFF_Variant
PEFF_Variant
Variant: DEPRECATED in favor of VariantSimple and VariantComplex. Former definition: Sequence variati...
Definition: cv.hpp:207
UNIMOD_DTT
UNIMOD_DTT
DTT: DTT adduct of cysteine.
Definition: cv.hpp:13494
MS_iodoTMT_quantitation_analysis
MS_iodoTMT_quantitation_analysis
iodoTMT quantitation analysis: Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo...
Definition: cv.hpp:8688
MS_microTOF_LC
MS_microTOF_LC
microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:900
MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE
MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modif...
Definition: cv.hpp:5583
UNIMOD_ExacTagThiol
UNIMOD_ExacTagThiol
ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
Definition: cv.hpp:10881
MS_combined_FDRScore_OBSOLETE
MS_combined_FDRScore_OBSOLETE
combined FDRScore: FDRScore values specifically obtained for distinct combinations of single,...
Definition: cv.hpp:6822
UNIMOD_pyrophospho
UNIMOD_pyrophospho
pyrophospho: Pyrophosphorylation of Ser/Thr.
Definition: cv.hpp:11079
UO_picomolar
UO_picomolar
picomolar: A unit of molarity which is equal to 10^[-12] M.
Definition: cv.hpp:14001
UO_acceleration_unit
UO_acceleration_unit
acceleration unit: A unit which is a standard measure of the rate of change of velocity in either spe...
Definition: cv.hpp:13947
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used durin...
Definition: cv.hpp:5445
UNIMOD_dHex_1_Hex_2_HexNAc_4_Sulf_2_
UNIMOD_dHex_1_Hex_2_HexNAc_4_Sulf_2_
dHex(1)Hex(2)HexNAc(4)Sulf(2): DHex Hex(2) HexNAc(4) Sulf(2).
Definition: cv.hpp:13698
MS_fragment_ion_intensity
MS_fragment_ion_intensity
fragment ion intensity (product ion intensity): The intensity of a single product ion.
Definition: cv.hpp:4110
UNIMOD_dHex_3_Hex_2_HexNAc_3_
UNIMOD_dHex_3_Hex_2_HexNAc_3_
dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
Definition: cv.hpp:13125
UNIMOD_monomethylphosphothione
UNIMOD_monomethylphosphothione
monomethylphosphothione: O-methylphosphothione.
Definition: cv.hpp:13788
MS_baseline
MS_baseline
baseline: An attribute of resolution when recording the detector response in absence of the analyte.
Definition: cv.hpp:567
UNIMOD_BEMAD_C_2H_6_
UNIMOD_BEMAD_C_2H_6_
BEMAD_C:2H(6): Beta elimination of alkylated Cys followed by Michael addition of labelled DTT.
Definition: cv.hpp:10917
MS_eight_sample_run
MS_eight_sample_run
eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
Definition: cv.hpp:5880
MS_param__c_ion
MS_param__c_ion
param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
Definition: cv.hpp:3816
MS_ProteinPilot_Software
MS_ProteinPilot_Software
ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
Definition: cv.hpp:2658
MS_Phenyx_PepPvalue
MS_Phenyx_PepPvalue
Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4596
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
Definition: cv.hpp:5217
MS_FA
MS_FA
FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that car...
Definition: cv.hpp:1227
MS_axial_ejection_linear_ion_trap
MS_axial_ejection_linear_ion_trap
axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the ...
Definition: cv.hpp:531
MS_Variance_stabilizing_normalization
MS_Variance_stabilizing_normalization
Variance stabilizing normalization: The model incorporates data calibration (normalization),...
Definition: cv.hpp:7080
MS_enhanced_resolution_scan
MS_enhanced_resolution_scan
enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acqui...
Definition: cv.hpp:2097
MS_SEQUEST_SelectDefault
MS_SEQUEST_SelectDefault
SEQUEST:SelectDefault:
Definition: cv.hpp:3891
MS_TagRecon_mzFidelity
MS_TagRecon_mzFidelity
TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5184
MS_LTQ_FT
MS_LTQ_FT
LTQ FT: Finnigan LTQ FT MS.
Definition: cv.hpp:1929
MS_3500_QTRAP
MS_3500_QTRAP
3500 QTRAP: SCIEX 3500 QTRAP.
Definition: cv.hpp:8190
MS_mzTab
MS_mzTab
mzTab: Tabular result format for proteomics and metabolomics experiments.
Definition: cv.hpp:8256
UNIMOD_GIST_Quat_2H_3_
UNIMOD_GIST_Quat_2H_3_
GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
Definition: cv.hpp:9522
UNIMOD_IASD
UNIMOD_IASD
IASD: Iodoacetamide derivative of stilbene (reaction product with thiol).
Definition: cv.hpp:13443
UNIMOD_Label_13C_6_15N_2__Dimethyl
UNIMOD_Label_13C_6_15N_2__Dimethyl
Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
Definition: cv.hpp:11256
MS_Bruker_XML_format
MS_Bruker_XML_format
Bruker XML format: Bruker data exchange XML format.
Definition: cv.hpp:4170
UO_lux
UO_lux
lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an ...
Definition: cv.hpp:14151
UO_kilogram_per_mole
UO_kilogram_per_mole
kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical e...
Definition: cv.hpp:14064
MS_NICI
MS_NICI
NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negativ...
Definition: cv.hpp:1326
MS_SWIFT
MS_SWIFT
SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ion...
Definition: cv.hpp:1404
MS_ProteomeDiscoverer_Target_FDR_Relaxed
MS_ProteomeDiscoverer_Target_FDR_Relaxed
ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR,...
Definition: cv.hpp:5403
UO_pH
UO_pH
pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activi...
Definition: cv.hpp:14385
UNIMOD_Tris
UNIMOD_Tris
Tris: Tris adduct causes 104 Da addition at asparagine-succinimide intermediate.
Definition: cv.hpp:13440
MS_label_free_peptide_level_quantitation
MS_label_free_peptide_level_quantitation
label-free peptide level quantitation: Label-free peptide level quantitation.
Definition: cv.hpp:6504
MS_transient_recorder
MS_transient_recorder
transient recorder: A detector acquisition mode used for detecting transient signals.
Definition: cv.hpp:699
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a ...
Definition: cv.hpp:5400
MS_peptide_level_score_OBSOLETE
MS_peptide_level_score_OBSOLETE
peptide level score: Peptide level score.
Definition: cv.hpp:7947
UNIMOD_Thr__Tyr
UNIMOD_Thr__Tyr
Thr->Tyr: Thr->Tyr substitution.
Definition: cv.hpp:11889
MS_TOPP_FeatureLinkerUnlabeledQT
MS_TOPP_FeatureLinkerUnlabeledQT
TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality thres...
Definition: cv.hpp:6978
MS_SpectrumMill_Discriminant_Score
MS_SpectrumMill_Discriminant_Score
SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
Definition: cv.hpp:5139
MS_Phenyx
MS_Phenyx
Phenyx: The name of the Phenyx search engine.
Definition: cv.hpp:4056
MS_PMT
MS_PMT
PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are ...
Definition: cv.hpp:681
UO_newton_per_meter
UO_newton_per_meter
newton per meter: A surface tension unit which is equal to one newton per meter.
Definition: cv.hpp:14559
UO_molal
UO_molal
molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram o...
Definition: cv.hpp:14007
MS_external_array_length
MS_external_array_length
external array length: Describes how many fields an array contains.
Definition: cv.hpp:8952
UNIMOD_Hex_4_HexNAc_2_Pent_1_
UNIMOD_Hex_4_HexNAc_2_Pent_1_
Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
Definition: cv.hpp:12453
UNIMOD_Acetylhypusine
UNIMOD_Acetylhypusine
Acetylhypusine: Acetylhypusine.
Definition: cv.hpp:11385
MS_5800_TOF_TOF
MS_5800_TOF_TOF
5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
Definition: cv.hpp:4851
UNIMOD_Gly__Gln
UNIMOD_Gly__Gln
Gly->Gln: Gly->Gln substitution.
Definition: cv.hpp:11586
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12987
UNIMOD_dHex_2_Hex_3_HexNAc_3_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexNAc_3_Sulf_1_
dHex(2)Hex(3)HexNAc(3)Sulf(1): Sulf dHex(2) Hex(3) HexNAc(3).
Definition: cv.hpp:13704
UNIMOD_Ala__Met
UNIMOD_Ala__Met
Ala->Met: Ala->Met substitution.
Definition: cv.hpp:11403
UNIMOD_IDEnT
UNIMOD_IDEnT
IDEnT: Isotope Distribution Encoded Tag.
Definition: cv.hpp:10911
MS_TOPP_AdditiveSeries
MS_TOPP_AdditiveSeries
TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
Definition: cv.hpp:6933
MS_chemical_compound_attribute
MS_chemical_compound_attribute
chemical compound attribute: A describable property of a chemical compound.
Definition: cv.hpp:3279
MS_PROTEINEER_spII
MS_PROTEINEER_spII
PROTEINEER spII: Bruker PROTEINEER spII software.
Definition: cv.hpp:2865
UO_length_unit
UO_length_unit
length unit: A unit which is a standard measure of the distance between two points.
Definition: cv.hpp:13806
MS_param__w_ion
MS_param__w_ion
param: w ion: Parameter information, type of product: side chain loss w ion.
Definition: cv.hpp:4206
UO_disintegrations_per_minute
UO_disintegrations_per_minute
disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:14241
MS_time_array
MS_time_array
time array: A data array of relative time offset values from a reference time.
Definition: cv.hpp:2439
MS_ProteinExtractor
MS_ProteinExtractor
ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinSca...
Definition: cv.hpp:4866
UO_volt_per_meter
UO_volt_per_meter
volt per meter: The volt per meter is a unit of electric field strength equal to the a potential diff...
Definition: cv.hpp:14601
MS_collision_gas_pressure
MS_collision_gas_pressure
collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
Definition: cv.hpp:3309
MS_transition_optimized_on_specified_instrument
MS_transition_optimized_on_specified_instrument
transition optimized on specified instrument: The transition has been optimized by direct injection o...
Definition: cv.hpp:3438
UO_micron_pixel
UO_micron_pixel
micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
Definition: cv.hpp:14520
MS_peptide_sequence_level_global_FDR
MS_peptide_sequence_level_global_FDR
peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptide...
Definition: cv.hpp:4500
UO_molar
UO_molar
molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solut...
Definition: cv.hpp:13989
MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_
MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_
Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining elec...
Definition: cv.hpp:8346
MS_Waters_raw_format
MS_Waters_raw_format
Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acqu...
Definition: cv.hpp:2184
MS_iTRAQH_quantitation_analysis
MS_iTRAQH_quantitation_analysis
iTRAQH quantitation analysis: Quantification analysis using the carbonyl-reactive isobaric tags for r...
Definition: cv.hpp:8700
MS_PubMed_identifier
MS_PubMed_identifier
PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
Definition: cv.hpp:3339
MS_mzidLib_InsertMetaDataFromFasta
MS_mzidLib_InsertMetaDataFromFasta
mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequen...
Definition: cv.hpp:7188
UO_concentration_unit
UO_concentration_unit
concentration unit: A unit which represents a standard measurement of how much of a given substance t...
Definition: cv.hpp:13956
UNIMOD_Carboxy__Thiocarboxy
UNIMOD_Carboxy__Thiocarboxy
Carboxy->Thiocarboxy: Thiocarboxylic acid.
Definition: cv.hpp:10170
MS_Surveyor_MSQ
MS_Surveyor_MSQ
Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
Definition: cv.hpp:945
MS_Phenyx_Peptides2
MS_Phenyx_Peptides2
Phenyx:Peptides2: Second number of phenyx result "#Peptides".
Definition: cv.hpp:4584
MS_KERD_OBSOLETE
MS_KERD_OBSOLETE
KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy re...
Definition: cv.hpp:1287
MS_minute_OBSOLETE
MS_minute_OBSOLETE
minute: Acquisition time in minutes.
Definition: cv.hpp:378
MS_ProteinScape_SequestMetaScore
MS_ProteinScape_SequestMetaScore
ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SE...
Definition: cv.hpp:4923
MS_decoy_DB_type_shuffle
MS_decoy_DB_type_shuffle
decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
Definition: cv.hpp:4755
UNIMOD_4_ONE_Delta_H__2_O__1_
UNIMOD_4_ONE_Delta_H__2_O__1_
4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
Definition: cv.hpp:10887
MS_focal_plane_array
MS_focal_plane_array
focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultane...
Definition: cv.hpp:666
UNIMOD_O_pinacolylmethylphosphonate
UNIMOD_O_pinacolylmethylphosphonate
O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
Definition: cv.hpp:10848
MS_Triple_Quad_3500
MS_Triple_Quad_3500
Triple Quad 3500: SCIEX Triple Quad 3500.
Definition: cv.hpp:8226
UNIMOD_BHT
UNIMOD_BHT
BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
Definition: cv.hpp:9723
UNIMOD_His__Xle
UNIMOD_His__Xle
His->Xle: His->Leu/Ile substitution.
Definition: cv.hpp:10527
MS_manual_validation
MS_manual_validation
manual validation: Result of quality estimation: decision of a manual validation.
Definition: cv.hpp:3834
UNIMOD_dHex_1_Hex_3_HexNAc_2_
UNIMOD_dHex_1_Hex_3_HexNAc_2_
dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
Definition: cv.hpp:13326
MS_Byonic
MS_Byonic
Byonic: Byonic search engine from Protein Metrics.
Definition: cv.hpp:7230
PEFF_VariantSimple
PEFF_VariantSimple
VariantSimple: Simple sequence variation of a single amino acid change. A change to a stop codon is p...
Definition: cv.hpp:258
MS_homolytic_cleavage_OBSOLETE
MS_homolytic_cleavage_OBSOLETE
homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons...
Definition: cv.hpp:1845
MS_TMT_reagent_128C
MS_TMT_reagent_128C
TMT reagent 128C: The name of the sample labelled with the TMT reagent 128C.
Definition: cv.hpp:8718
UNIMOD_ESP
UNIMOD_ESP
ESP: ESP-Tag light d0.
Definition: cv.hpp:9543
UO_milligram_per_kilogram
UO_milligram_per_kilogram
milligram per kilogram: A dose unit which is equal to 1 milligram of a toxic or pharmaceutical substa...
Definition: cv.hpp:14721
MS_researcher
MS_researcher
researcher: Researcher role.
Definition: cv.hpp:4233
MS_signal_to_noise_ratio
MS_signal_to_noise_ratio
signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signa...
Definition: cv.hpp:6066
UNIMOD_Dap_DSP
UNIMOD_Dap_DSP
Dap-DSP: Diaminopimelic acid-DSP monolinked.
Definition: cv.hpp:12309
MS_6120B_Quadrupole_LC_MS
MS_6120B_Quadrupole_LC_MS
6120B Quadrupole LC/MS: The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrume...
Definition: cv.hpp:8802
MS_SSRCalc
MS_SSRCalc
SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on the...
Definition: cv.hpp:3324
MS_SORI
MS_SORI
SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotr...
Definition: cv.hpp:1392
UO_ampere
UO_ampere
ampere: An electric current unit which is equal to the constant current which, if maintained in two s...
Definition: cv.hpp:13836
UNIMOD_Label_13C_9_15N_1_
UNIMOD_Label_13C_9_15N_1_
Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
Definition: cv.hpp:9834
UNIMOD_Gln__Val
UNIMOD_Gln__Val
Gln->Val: Gln->Val substitution.
Definition: cv.hpp:11811
MS_LIMSA
MS_LIMSA
LIMSA: Software tool for the quantitative analysis of mass spectrometric lipidome data.
Definition: cv.hpp:9357
MS_LTQ
MS_LTQ
LTQ: Finnigan LTQ MS.
Definition: cv.hpp:1926
MS_isolation_window_lower_offset
MS_isolation_window_lower_offset
isolation window lower offset: The extent of the isolation window in m/z below the isolation window t...
Definition: cv.hpp:3183
MS_TopMG_spectral_FDR
MS_TopMG_spectral_FDR
TopMG:spectral FDR: TopMG spectrum-level FDR.
Definition: cv.hpp:9276
UNIMOD_Diethyl
UNIMOD_Diethyl
Diethyl: Diethylation, analogous to Dimethylation.
Definition: cv.hpp:10341
MS_peptide_consensus_m_z
MS_peptide_consensus_m_z
peptide consensus m/z: Peptide consensus mass/charge ratio.
Definition: cv.hpp:6645
UNIMOD_Phenylisocyanate_2H_5_
UNIMOD_Phenylisocyanate_2H_5_
Phenylisocyanate:2H(5): D5-phenyl isocyanate.
Definition: cv.hpp:10149
MS_TOPP_SpectraFilterNormalizer
MS_TOPP_SpectraFilterNormalizer
TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
Definition: cv.hpp:6870
MS_OMSSA_evalue
MS_OMSSA_evalue
OMSSA:evalue: OMSSA E-value.
Definition: cv.hpp:4392
MS_ProteomeDiscoverer_input_parameter
MS_ProteomeDiscoverer_input_parameter
ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
Definition: cv.hpp:6753
MS_soft_ionization
MS_soft_ionization
soft ionization: The formation of gas-phase ions without extensive fragmentation.
Definition: cv.hpp:1782
MS_PSI_mzData_format
MS_PSI_mzData_format
PSI mzData format: Proteomics Standards Inititative mzData file format.
Definition: cv.hpp:2301
UNIMOD_EGCG1
UNIMOD_EGCG1
EGCG1: (-)-epigallocatechin-3-gallate.
Definition: cv.hpp:11286
PEFF_Chain
PEFF_Chain
Chain: Sequence range of active processed polypeptide.
Definition: cv.hpp:234
MS_proteoform_level_statistical_threshold
MS_proteoform_level_statistical_threshold
proteoform-level statistical threshold: Estimated statistical threshold at proteoform-level.
Definition: cv.hpp:9150
MS_Orbitrap_Fusion_Lumos
MS_Orbitrap_Fusion_Lumos
Orbitrap Fusion Lumos: Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid archite...
Definition: cv.hpp:8616
MS_param__z_1_ion
MS_param__z_1_ion
param: z+1 ion: Parameter information, type of product: z+1 ion.
Definition: cv.hpp:4623
MS_interaction_score_derived_from_cross_linking
MS_interaction_score_derived_from_cross_linking
interaction score derived from cross-linking: Parent term for interaction scores derived from cross-l...
Definition: cv.hpp:8451
UO_cells_per_microliter
UO_cells_per_microliter
cells per microliter: A unit of cell concentration which is equal to one cell in a volume of 1 microl...
Definition: cv.hpp:14745
MS_SEQUEST_sort_by_dM
MS_SEQUEST_sort_by_dM
SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically ca...
Definition: cv.hpp:3627
MS_stainless_steel_plate
MS_stainless_steel_plate
stainless steel plate: Stainless steel plate.
Definition: cv.hpp:6237
MS_ACQUITY_UPLC_Systems_with_2D_Technology
MS_ACQUITY_UPLC_Systems_with_2D_Technology
ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
Definition: cv.hpp:5709
MS_D_Score_threshold
MS_D_Score_threshold
D-Score threshold: Threshold for D-score PTM site location score.
Definition: cv.hpp:8124
MS_database_original_uri
MS_database_original_uri
database original uri: URI, from where the search database was originally downloaded.
Definition: cv.hpp:3543
UO_kilobyte
UO_kilobyte
kilobyte: An information unit which is equal to 1000 bytes.
Definition: cv.hpp:14499
MS_PEAKS_peptideScore
MS_PEAKS_peptideScore
PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
Definition: cv.hpp:6273
MS_conversion_dynode
MS_conversion_dynode
conversion dynode: A surface that is held at high potential such that ions striking the surface produ...
Definition: cv.hpp:1611
MS_taxonomy__Swiss_Prot_ID
MS_taxonomy__Swiss_Prot_ID
taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified,...
Definition: cv.hpp:4806
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
ProteomeDiscoverer:Source Files: Input pepXML files.
Definition: cv.hpp:5628
MS_PRIDE_project_URI
MS_PRIDE_project_URI
PRIDE project URI: URI that allows the access to one project in the PRIDE database.
Definition: cv.hpp:6210
MS_DB_sequence_filter_pattern
MS_DB_sequence_filter_pattern
DB sequence filter pattern: DB sequence filter pattern.
Definition: cv.hpp:4944
MS_continuous_flow_fast_atom_bombardment
MS_continuous_flow_fast_atom_bombardment
continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solut...
Definition: cv.hpp:441
MS_X500R_QTOF
MS_X500R_QTOF
X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition: cv.hpp:8481
MS_sum_peak_picking
MS_sum_peak_picking
sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to conv...
Definition: cv.hpp:3093
UNIMOD_Asp__Gly
UNIMOD_Asp__Gly
Asp->Gly: Asp->Gly substitution.
Definition: cv.hpp:10446
MS_SRM_software
MS_SRM_software
SRM software: Software used to predict, select, or optimize transitions or analyze the results of sel...
Definition: cv.hpp:3315
MS_6550_iFunnel_Q_TOF_LC_MS
MS_6550_iFunnel_Q_TOF_LC_MS
6550 iFunnel Q-TOF LC/MS: The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography...
Definition: cv.hpp:8769
UNIMOD_Label_2H_4__Acetyl
UNIMOD_Label_2H_4__Acetyl
Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
Definition: cv.hpp:10986
MS_Bruker_TDF_format
MS_Bruker_TDF_format
Bruker TDF format: Bruker TDF raw file format.
Definition: cv.hpp:8874
MS_AMS_OBSOLETE
MS_AMS_OBSOLETE
AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sa...
Definition: cv.hpp:1125
MS_mass_difference
MS_mass_difference
mass difference (delta M): The difference between a theoretically calculated molecular mass M and the...
Definition: cv.hpp:6357
MS_MassIVE_dataset_identifier
MS_MassIVE_dataset_identifier
MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer ...
Definition: cv.hpp:7911
UNIMOD_Dimethyl
UNIMOD_Dimethyl
Dimethyl: Di-Methylation.
Definition: cv.hpp:9453
MS_product_ion_m_z_delta
MS_product_ion_m_z_delta
product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion m...
Definition: cv.hpp:3417
UNIMOD_TMT2plex
UNIMOD_TMT2plex
TMT2plex: Duplex Tandem Mass Tag®.
Definition: cv.hpp:10875
UNIMOD_HNE_Delta_H_2_O
UNIMOD_HNE_Delta_H_2_O
HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
Definition: cv.hpp:10830
MS_SEQUEST_sort_by_Ions
MS_SEQUEST_sort_by_Ions
SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
Definition: cv.hpp:3630
MS_resolution_measurement_method
MS_resolution_measurement_method
resolution measurement method: Which of the available standard measures is used to define whether two...
Definition: cv.hpp:297
MS_electron_multiplier_tube
MS_electron_multiplier_tube
electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:657
MS_iTRAQ_reagent_114
MS_iTRAQ_reagent_114
iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
Definition: cv.hpp:8325
MS_liquid_sample_state
MS_liquid_sample_state
liquid sample state: State if the sample is in liquid form.
Definition: cv.hpp:423
MS_Citius_HRT
MS_Citius_HRT
Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
Definition: cv.hpp:5820
MS_MAT900XP_Trap
MS_MAT900XP_Trap
MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
Definition: cv.hpp:888
MS_nanospray_inlet
MS_nanospray_inlet
nanospray inlet: Nanospray Inlet.
Definition: cv.hpp:2055
MS_delayed_extraction
MS_delayed_extraction
delayed extraction: The application of the accelerating voltage pulse after a time delay in desorptio...
Definition: cv.hpp:1170
MS_cross_link_acceptor
MS_cross_link_acceptor
cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export so...
Definition: cv.hpp:7980
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
Definition: cv.hpp:9672
MS_spectrum_from_database_integer_nativeID_format
MS_spectrum_from_database_integer_nativeID_format
spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4983
MS_PTM_localization_score_threshold
MS_PTM_localization_score_threshold
PTM localization score threshold: Threshold for PTM site location score.
Definition: cv.hpp:8118
UNIMOD_Ala__His
UNIMOD_Ala__His
Ala->His: Ala->His substitution.
Definition: cv.hpp:11394
MS_Quattro_Ultima
MS_Quattro_Ultima
Quattro Ultima: Waters (triple) quadrupole based Ultima.
Definition: cv.hpp:942
MS_TPP
MS_TPP
TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics dat...
Definition: cv.hpp:7305
UNIMOD_Gly__Thr
UNIMOD_Gly__Thr
Gly->Thr: Gly->Thr substitution.
Definition: cv.hpp:11589
MS_6210_Time_of_Flight_LC_MS
MS_6210_Time_of_Flight_LC_MS
6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:2013
UNIMOD_Hex_4_HexNAc_3_Pent_1_
UNIMOD_Hex_4_HexNAc_3_Pent_1_
Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:12483
MS_scan_number_only_nativeID_format
MS_scan_number_only_nativeID_format
scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:3000
UNIMOD_DHP
UNIMOD_DHP
DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
Definition: cv.hpp:10287
MS_SEQUEST_matched_ions
MS_SEQUEST_matched_ions
SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
Definition: cv.hpp:3942
MS_laser_attribute
MS_laser_attribute
laser attribute: Laser properties that are associated with a value.
Definition: cv.hpp:3219
UNIMOD_NO_SMX_SMCT
UNIMOD_NO_SMX_SMCT
NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
Definition: cv.hpp:10893
MS_TMT_reagent_130C
MS_TMT_reagent_130C
TMT reagent 130C: The name of the sample labelled with the TMT reagent 130C.
Definition: cv.hpp:8730
UO_zetta
UO_zetta
zetta: A prefix in the metric system denoting a factor of ten to the power of 21.
Definition: cv.hpp:14661
MS_frag__b_ion___NH3
MS_frag__b_ion___NH3
frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
Definition: cv.hpp:4128
MS_ProteoWizard_SeeMS
MS_ProteoWizard_SeeMS
ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a var...
Definition: cv.hpp:7074
UO_plane_angle_unit
UO_plane_angle_unit
plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the...
Definition: cv.hpp:14169
MS_accelerator_mass_spectrometry_OBSOLETE
MS_accelerator_mass_spectrometry_OBSOLETE
accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample a...
Definition: cv.hpp:1122
MS_Clostripain
MS_Clostripain
Clostripain (Arg-C): Endoproteinase Arg-C.
Definition: cv.hpp:4317
UO_unit_of_molarity
UO_unit_of_molarity
unit of molarity: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:13986
UNIMOD_Unknown_162
UNIMOD_Unknown_162
Unknown:162: Unidentified modification of 162.1258 found in open search.
Definition: cv.hpp:13752
MS_experimental_condition__disease_
MS_experimental_condition__disease_
experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
Definition: cv.hpp:5850
UO_millimeters_per_day
UO_millimeters_per_day
millimeters per day: A speed/velocity unit which is equal to the speed of an object traveling 1 milli...
Definition: cv.hpp:14808
MS_Dataset_with_its_publication_pending
MS_Dataset_with_its_publication_pending
Dataset with its publication pending: A dataset which has an associated manuscript pending for public...
Definition: cv.hpp:8997
MS_focus_diameter_y
MS_focus_diameter_y
focus diameter y: Describes the diameter of the laser beam in y direction.
Definition: cv.hpp:3231
MS_7000B_Triple_Quadrupole_GC_MS
MS_7000B_Triple_Quadrupole_GC_MS
7000B Triple Quadrupole GC/MS: The 7000B Quadrupole GC/MS system is a Agilent gas chromatography inst...
Definition: cv.hpp:8829
MS_sample_volume
MS_sample_volume
sample volume: Total volume of solution used.
Definition: cv.hpp:276
MS_Q_TRAP
MS_Q_TRAP
Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
Definition: cv.hpp:927
UNIMOD_Thiophospho
UNIMOD_Thiophospho
Thiophospho: Thiophosphorylation.
Definition: cv.hpp:9816
UNIMOD_Label_13C_6__GG
UNIMOD_Label_13C_6__GG
Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
Definition: cv.hpp:10956
MS_scan_window_lower_limit
MS_scan_window_lower_limit
scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:2109
MS_EMR_radiation_chromatogram
MS_EMR_radiation_chromatogram
EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnet...
Definition: cv.hpp:3132
UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_
UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_
Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:12633
MS_OMSSA_xml_format
MS_OMSSA_xml_format
OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
Definition: cv.hpp:4608
UNIMOD_Pyridylacetyl
UNIMOD_Pyridylacetyl
Pyridylacetyl: Pyridylacetyl.
Definition: cv.hpp:9426
PEFF_Individual_Sequence_Entries_Section_term
PEFF_Individual_Sequence_Entries_Section_term
Individual Sequence Entries Section term: CV term that may appear in a PEFF Individual Entry Section.
Definition: cv.hpp:126
MS_TOPP_Decharger
MS_TOPP_Decharger
TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
Definition: cv.hpp:6936
MS_CS
MS_CS
CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the re...
Definition: cv.hpp:1167
UNIMOD_dHex_3_Hex_3_HexNAc_4_
UNIMOD_dHex_3_Hex_3_HexNAc_4_
dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
Definition: cv.hpp:12618
UNIMOD_Tyr__Glu
UNIMOD_Tyr__Glu
Tyr->Glu: Tyr->Glu substitution.
Definition: cv.hpp:11967
MS_charge_deconvolution
MS_charge_deconvolution
charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that r...
Definition: cv.hpp:366
UNIMOD_Hex_4_HexNAc_2_NeuAc_1_
UNIMOD_Hex_4_HexNAc_2_NeuAc_1_
Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc —OR— Hex(3) HexNAc(2) dHex NeuGc.
Definition: cv.hpp:12468
MS_LipidFinder
MS_LipidFinder
LipidFinder: A computational workflow for the discovery of lipids for the identification of eicosanoi...
Definition: cv.hpp:9342
UNIMOD_Ser__Arg
UNIMOD_Ser__Arg
Ser->Arg: Ser->Arg substitution.
Definition: cv.hpp:10719
MS_ProteomeDiscoverer_WinCyg_reference_database
MS_ProteomeDiscoverer_WinCyg_reference_database
ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
Definition: cv.hpp:5634
pwiz::cv::cv
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO
MS_identification_file_attribute
MS_identification_file_attribute
identification file attribute: Attribute describing an identification file.
Definition: cv.hpp:6828
MS_microflex_LRF
MS_microflex_LRF
microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
Definition: cv.hpp:5034
MS_iProX_dataset_URI
MS_iProX_dataset_URI
iProX dataset URI: URI that allows the access to one dataset in the iProX repository....
Definition: cv.hpp:8934
MS_supplemental_collision_energy
MS_supplemental_collision_energy
supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationar...
Definition: cv.hpp:8499
UNIMOD_HexNAc_1_NeuGc_1_
UNIMOD_HexNAc_1_NeuGc_1_
HexNAc(1)NeuGc(1): HexNAc NeuGc.
Definition: cv.hpp:12390
MS_sample_number
MS_sample_number
sample number: A reference number relevant to the sample under study.
Definition: cv.hpp:264
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_
dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
Definition: cv.hpp:13131
MS_m_z_Separation_Method_OBSOLETE
MS_m_z_Separation_Method_OBSOLETE
m/z Separation Method: Mass/charge separation Method.
Definition: cv.hpp:1914
UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_
UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_
dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
Definition: cv.hpp:12663
UNIMOD_G_H1
UNIMOD_G_H1
G-H1: Glyoxal-derived hydroimiadazolone.
Definition: cv.hpp:11016
UNIMOD_Hex_2_HexNAc_2_NeuGc_1_
UNIMOD_Hex_2_HexNAc_2_NeuGc_1_
Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
Definition: cv.hpp:12954
UNIMOD_Lys__Cys
UNIMOD_Lys__Cys
Lys->Cys: Lys->Cys substitution.
Definition: cv.hpp:11649
PEFF_Domain
PEFF_Domain
Domain: Sequence range of a domain.
Definition: cv.hpp:249
UNIMOD_Tyr__Pro
UNIMOD_Tyr__Pro
Tyr->Pro: Tyr->Pro substitution.
Definition: cv.hpp:11979
MS_high_intensity_data_point_removal
MS_high_intensity_data_point_removal
high intensity data point removal: The removal of very high intensity data points.
Definition: cv.hpp:2907
UO_speed_velocity_unit
UO_speed_velocity_unit
speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in...
Definition: cv.hpp:13983
UNIMOD_dHex_1_Hex_3_HexNAc_6_
UNIMOD_dHex_1_Hex_3_HexNAc_6_
dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
Definition: cv.hpp:13386
MS_Scaffold_Protein_Probability
MS_Scaffold_Protein_Probability
Scaffold:Protein Probability: Scaffold protein probability score.
Definition: cv.hpp:5136
MS_label_free_protein_level_quantitation
MS_label_free_protein_level_quantitation
label-free protein level quantitation: Label-free protein level quantitation.
Definition: cv.hpp:6507
MS_Non_peer_reviewed_dataset
MS_Non_peer_reviewed_dataset
Non peer-reviewed dataset: Dataset that has not been peer-reviewed by any means.
Definition: cv.hpp:8988
MS_MS2_tag_based_peptide_level_quantitation
MS_MS2_tag_based_peptide_level_quantitation
MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
Definition: cv.hpp:6519
UNIMOD_Hex_6_HexNAc_5_
UNIMOD_Hex_6_HexNAc_5_
Hex(6)HexNAc(5): Hex(6) HexNAc(5).
Definition: cv.hpp:12762
MS_tube_lens_voltage
MS_tube_lens_voltage
tube lens voltage: Potential difference setting of the tube lens in volts.
Definition: cv.hpp:3333
UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
Definition: cv.hpp:12966
MS_taxonomy_nomenclature_OBSOLETE
MS_taxonomy_nomenclature_OBSOLETE
taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated ...
Definition: cv.hpp:3729
UNIMOD_His__Ala
UNIMOD_His__Ala
His->Ala: His->Ala substitution.
Definition: cv.hpp:11595
MS_API_3000
MS_API_3000
API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
Definition: cv.hpp:804
UNIMOD_IMID
UNIMOD_IMID
IMID: IMID d0.
Definition: cv.hpp:9555
MS_SEQUEST_Uniq
MS_SEQUEST_Uniq
SEQUEST:Uniq:
Definition: cv.hpp:3933
MS_thermal_ionization
MS_thermal_ionization
thermal ionization: The ionization of a neutral species through contact with a high temperature surfa...
Definition: cv.hpp:1794
MS_laser_type
MS_laser_type
laser type: Type of laser used for desorption purpose.
Definition: cv.hpp:3222
UNIMOD_Arg__Pro
UNIMOD_Arg__Pro
Arg->Pro: Arg->Pro substitution.
Definition: cv.hpp:10671
MS_ProteinExtractor_Methodname
MS_ProteinExtractor_Methodname
ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
Definition: cv.hpp:4671
MS_ProteomeDiscoverer_Mascot_Significance_High
MS_ProteomeDiscoverer_Mascot_Significance_High
ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy ...
Definition: cv.hpp:7137
MS_modification_specificity_protein_C_term
MS_modification_specificity_protein_C_term
modification specificity protein C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6624
UO_becquerel
UO_becquerel
becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radio...
Definition: cv.hpp:14196
UNIMOD_FMNC
UNIMOD_FMNC
FMNC: S-(4a-FMN).
Definition: cv.hpp:10230
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or ...
Definition: cv.hpp:5379
UNIMOD_Lys__Glu
UNIMOD_Lys__Glu
Lys->Glu: Lys->Glu substitution.
Definition: cv.hpp:10545
MS_search_engine_specific_input_metadata
MS_search_engine_specific_input_metadata
search engine specific input metadata: Search engine specific metadata that are not user-controlled s...
Definition: cv.hpp:7746
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
Definition: cv.hpp:5667
UNIMOD_Val__Ala
UNIMOD_Val__Ala
Val->Ala: Val->Ala substitution.
Definition: cv.hpp:10755
UNIMOD_PyridoxalPhosphate
UNIMOD_PyridoxalPhosphate
PyridoxalPhosphate: Pyridoxal phosphate.
Definition: cv.hpp:9480
MS_intensity_array
MS_intensity_array
intensity array: A data array of intensity values.
Definition: cv.hpp:2151
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5493
MS_confident_peptide_sequence_number
MS_confident_peptide_sequence_number
confident peptide sequence number: This counts the number of peptide sequences without regard to whet...
Definition: cv.hpp:3759
UNIMOD_Carbonyl
UNIMOD_Carbonyl
Carbonyl: Aldehyde and ketone modifications.
Definition: cv.hpp:13602
MS_charge_array
MS_charge_array
charge array: A data array of charge values.
Definition: cv.hpp:2154
MS_ProteomeDiscoverer_Organism_OBSOLETE
MS_ProteomeDiscoverer_Organism_OBSOLETE
ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
Definition: cv.hpp:5616
MS_Pepitome
MS_Pepitome
Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
Definition: cv.hpp:5166
MS_protein_description
MS_protein_description
protein description: The protein description line from the sequence entry in the source database FAST...
Definition: cv.hpp:3723
MS_product_ion_spectrum_OBSOLETE
MS_product_ion_spectrum_OBSOLETE
product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z sep...
Definition: cv.hpp:1599
MS_ProteinExtractor_MascotUniqueScore
MS_ProteinExtractor_MascotUniqueScore
ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4695
UNIMOD_dHex_1_Hex_4_HexA_1_
UNIMOD_dHex_1_Hex_4_HexA_1_
dHex(1)Hex(4)HexA(1): DHex Hex(4) HexA.
Definition: cv.hpp:13671
MS_MSPathFinder_SpecEValue
MS_MSPathFinder_SpecEValue
MSPathFinder:SpecEValue: MSPathFinder spectral E-value.
Definition: cv.hpp:8583
MS_EVOQ_Elite
MS_EVOQ_Elite
EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
Definition: cv.hpp:7341
MS_Pegasus_III
MS_Pegasus_III
Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:7281
UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_
UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_
dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
Definition: cv.hpp:12447
MS_alternating_OBSOLETE
MS_alternating_OBSOLETE
alternating: Alternating.
Definition: cv.hpp:1995
MS_time_digital_converter
MS_time_digital_converter
time-digital converter: A device for converting a signal of sporadic pluses into a digital representa...
Definition: cv.hpp:693
UNIMOD_Triton
UNIMOD_Triton
Triton: Triton synthetic polymer terminus.
Definition: cv.hpp:13455
UNIMOD_NA_OA_NO2
UNIMOD_NA_OA_NO2
NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
Definition: cv.hpp:10812
MS_TRITON
MS_TRITON
TRITON: ThermoFinnigan TRITON MS.
Definition: cv.hpp:960
MS_error_on_peptide_area
MS_error_on_peptide_area
error on peptide area: Error on peptide area.
Definition: cv.hpp:3852
UO_absorbance_unit
UO_absorbance_unit
absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light throug...
Definition: cv.hpp:14604
UNIMOD_Hex_1_HexNAc_2_
UNIMOD_Hex_1_HexNAc_2_
Hex(1)HexNAc(2): Hex1HexNAc2.
Definition: cv.hpp:9669
UNIMOD_DimethylArsino
UNIMOD_DimethylArsino
DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
Definition: cv.hpp:11088
UNIMOD_Delta_H_6_C_3_O_1_
UNIMOD_Delta_H_6_C_3_O_1_
Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
Definition: cv.hpp:12138
MS_PTM_localization_attribute
MS_PTM_localization_attribute
PTM localization attribute: Statistic derived from a post-translational modification localization ana...
Definition: cv.hpp:8523
UNIMOD_Arg__Gln
UNIMOD_Arg__Gln
Arg->Gln: Arg->Gln substitution.
Definition: cv.hpp:10680
UNIMOD_Hex_1_HexNAc_2_Pent_1_
UNIMOD_Hex_1_HexNAc_2_Pent_1_
Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
Definition: cv.hpp:9678
MS_gas_laser
MS_gas_laser
gas laser: Laser which is powered by a gaseous medium.
Definition: cv.hpp:3246
UNIMOD_Trp__His
UNIMOD_Trp__His
Trp->His: Trp->His substitution.
Definition: cv.hpp:11937
UNIMOD_Tyr__Asp
UNIMOD_Tyr__Asp
Tyr->Asp: Tyr->Asp substitution.
Definition: cv.hpp:10800
MS_micrOTOF_Q
MS_micrOTOF_Q
micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2778
MS_isotopic_pattern_area
MS_isotopic_pattern_area
isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e....
Definition: cv.hpp:5952
UNIMOD_Trioxidation
UNIMOD_Trioxidation
Trioxidation: Cysteine oxidation to cysteic acid.
Definition: cv.hpp:9990
MS_direct_insertion_probe
MS_direct_insertion_probe
direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer io...
Definition: cv.hpp:1182
MS_database_IPI_zebrafish
MS_database_IPI_zebrafish
database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
Definition: cv.hpp:4263
MS_unknown_modification
MS_unknown_modification
unknown modification: This term should be given if the modification was unknown.
Definition: cv.hpp:4779
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
Definition: cv.hpp:12672
MS_ProteomeDiscoverer_Number_of_input3_spectra
MS_ProteomeDiscoverer_Number_of_input3_spectra
ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
Definition: cv.hpp:5604
MS_decoy_DB_derived_from_OBSOLETE
MS_decoy_DB_derived_from_OBSOLETE
decoy DB derived from: The name of the database, the search database was derived from.
Definition: cv.hpp:4254
MS_standard
MS_standard
standard: Something, such as a practice or a product, that is widely recognized or employed,...
Definition: cv.hpp:3399
MS_SIFT
MS_SIFT
SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier ...
Definition: cv.hpp:1386
MS_protein_cluster_identification_attribute
MS_protein_cluster_identification_attribute
protein cluster identification attribute: An attribute of the protein cluster concept as used in mzId...
Definition: cv.hpp:8550
MS_TOPP_OpenSwathDecoyGenerator
MS_TOPP_OpenSwathDecoyGenerator
TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
Definition: cv.hpp:7047
MS_convex_hull_baseline_reduction
MS_convex_hull_baseline_reduction
convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum...
Definition: cv.hpp:6414
UNIMOD_AHA_SS_CAM
UNIMOD_AHA_SS_CAM
AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
Definition: cv.hpp:12003
MS_TopPIC
MS_TopPIC
TopPIC: TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and ch...
Definition: cv.hpp:9126
MS_MS2_tag_based_proteingroup_level_quantitation
MS_MS2_tag_based_proteingroup_level_quantitation
MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
Definition: cv.hpp:6525
UNIMOD_Hex_6_Phos_3_
UNIMOD_Hex_6_Phos_3_
Hex(6)Phos(3): Hex(6) Phos(3).
Definition: cv.hpp:13038
MS_contact_email
MS_contact_email
contact email: Email address of the contact person or organization.
Definition: cv.hpp:2418
UO_base_unit
UO_base_unit
base unit: A unit which is one of a particular measure to which all measures of that type can be rela...
Definition: cv.hpp:13938
MS_MaxQuant_Phospho__STY__Score_Diffs
MS_MaxQuant_Phospho__STY__Score_Diffs
MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
Definition: cv.hpp:6372
MS_sequence_multiply_subsumable_protein
MS_sequence_multiply_subsumable_protein
sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same,...
Definition: cv.hpp:8163
UNIMOD_Delta_H_2_C_3_O_1_
UNIMOD_Delta_H_2_C_3_O_1_
Delta:H(2)C(3)O(1): MDA adduct +54.
Definition: cv.hpp:9942
UO_kilogram
UO_kilogram
kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the ...
Definition: cv.hpp:13830
pwiz::cv::CVTermInfo::isObsolete
bool isObsolete
Definition: cv.hpp:14949
UNIMOD_Asp__Asn
UNIMOD_Asp__Asn
Asp->Asn: Asp->Asn substitution.
Definition: cv.hpp:10443
MS_LIQUID
MS_LIQUID
LIQUID: An-open source software for identifying lipids in LC-MS/MS-based lipidomics data.
Definition: cv.hpp:9348
UO_count_per_molar_second
UO_count_per_molar_second
count per molar second: A rate unit which is equal to one over one molar second.
Definition: cv.hpp:14643
UNIMOD_Hex_2_HexNAc_3_NeuGc_3_
UNIMOD_Hex_2_HexNAc_3_NeuGc_3_
Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
Definition: cv.hpp:13299
MS_mzidLib_Csv2Mzid
MS_mzidLib_Csv2Mzid
mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
Definition: cv.hpp:7167
UNIMOD_Hex_5_HexNAc_4_NeuAc_2_
UNIMOD_Hex_5_HexNAc_4_NeuAc_2_
Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
Definition: cv.hpp:12327
MS_MSnbase
MS_MSnbase
MSnbase: Bioconductor package MSnbase provides infrastructure for manipulation, processing and visual...
Definition: cv.hpp:9033
MS_UIMF_nativeID_format
MS_UIMF_nativeID_format
UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteg...
Definition: cv.hpp:8049
MS_unlabeled_peptide
MS_unlabeled_peptide
unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes....
Definition: cv.hpp:3378
PEFF_DbName
PEFF_DbName
DbName: Sequence Database Name.
Definition: cv.hpp:129
MS_Bruker_Daltonics_HCT_Series
MS_Bruker_Daltonics_HCT_Series
Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
Definition: cv.hpp:2760
UNIMOD_Gln__Ser
UNIMOD_Gln__Ser
Gln->Ser: Gln->Ser substitution.
Definition: cv.hpp:11805
UNIMOD_PS_Hapten
UNIMOD_PS_Hapten
PS_Hapten: Reaction with phenyl salicylate (PS).
Definition: cv.hpp:12195
UNIMOD_His__Gly
UNIMOD_His__Gly
His->Gly: His->Gly substitution.
Definition: cv.hpp:11607
MS_SCiLS_software
MS_SCiLS_software
SCiLS software: SCiLS software for data acquisition and analysis.
Definition: cv.hpp:7599
MS_Auto_Spec_Ultima_NT
MS_Auto_Spec_Ultima_NT
Auto Spec Ultima NT: Waters magnetic sector based AutoSpec Ultima NT MS.
Definition: cv.hpp:816
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
Definition: cv.hpp:5361
MS_DB_filter_taxonomy
MS_DB_filter_taxonomy
DB filter taxonomy: A taxonomy filter was to the database search.
Definition: cv.hpp:3558
UNIMOD_phosphoRibosyl
UNIMOD_phosphoRibosyl
phosphoRibosyl: Phosphate-ribosylation.
Definition: cv.hpp:12210
MS_peak_intensity_OBSOLETE
MS_peak_intensity_OBSOLETE
peak intensity: The height or area of a peak in a mass spectrum.
Definition: cv.hpp:1095
UNIMOD_Phosphoadenosine
UNIMOD_Phosphoadenosine
Phosphoadenosine: AMP.
Definition: cv.hpp:10131
UNIMOD_Hex_2_HexNAc_5_
UNIMOD_Hex_2_HexNAc_5_
Hex(2)HexNAc(5): Hex(2) HexNAc(5).
Definition: cv.hpp:13113
MS_neptune
MS_neptune
neptune: ThermoFinnigan NEPTUNE MS.
Definition: cv.hpp:903
MS_first_author
MS_first_author
first author: The first of a set of authors associated with a publication or release....
Definition: cv.hpp:6546
UNIMOD_Methyl_2H_3_13C_1_
UNIMOD_Methyl_2H_3_13C_1_
Methyl:2H(3)13C(1): Monomethylation.
Definition: cv.hpp:9960
MS_delta_M
MS_delta_M
delta M: The difference between a theoretically calculated molecular mass M and the corresponding exp...
Definition: cv.hpp:6354
MS_Accepted_manuscript
MS_Accepted_manuscript
Accepted manuscript: A dataset has one associated manuscript, which has been accepted but no PubMedID...
Definition: cv.hpp:9018
UNIMOD_Dansyl
UNIMOD_Dansyl
Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
Definition: cv.hpp:9642
MS_TopMG_proteoform_level_FDR
MS_TopMG_proteoform_level_FDR
TopMG:proteoform-level FDR: TopMG proteoform-level FDR.
Definition: cv.hpp:9279
MS_septum
MS_septum
septum: A disc composed of a flexible material that seals the entrance to the reservoir....
Definition: cv.hpp:483
UO_mass_percentage
UO_mass_percentage
mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixtur...
Definition: cv.hpp:14286
MS_Paragon_special_factor
MS_Paragon_special_factor
Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors'...
Definition: cv.hpp:7791
UNIMOD_HMVK
UNIMOD_HMVK
HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
Definition: cv.hpp:10047
MS_OMSSA_e_value_threshold
MS_OMSSA_e_value_threshold
OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
Definition: cv.hpp:4746
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_
Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
Definition: cv.hpp:13320
UNIMOD_Tyr__His
UNIMOD_Tyr__His
Tyr->His: Tyr->His substitution.
Definition: cv.hpp:10797
MS_electron_volt_OBSOLETE
MS_electron_volt_OBSOLETE
electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing o...
Definition: cv.hpp:777
MS_normalized_peptide_value
MS_normalized_peptide_value
normalized peptide value: Normalized peptide value.
Definition: cv.hpp:5964
MS_channeltron
MS_channeltron
channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier....
Definition: cv.hpp:639
UNIMOD_Xlink_DTBP_172_
UNIMOD_Xlink_DTBP_172_
Xlink:DTBP[172]: Intact DTBP crosslinker.
Definition: cv.hpp:13554
MS_time_of_flight
MS_time_of_flight
time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a ...
Definition: cv.hpp:561
MS_frag__precursor_ion___NH3
MS_frag__precursor_ion___NH3
frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
Definition: cv.hpp:4971
MS_Calculate_Probability_Scores
MS_Calculate_Probability_Scores
Calculate Probability Scores: Flag indicating that a probability score for the assessment that a repo...
Definition: cv.hpp:6720
UNIMOD_CarboxymethylDTT
UNIMOD_CarboxymethylDTT
CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
Definition: cv.hpp:11067
UNIMOD_Label_13C_6_
UNIMOD_Label_13C_6_
Label:13C(6): 13C(6) Silac label.
Definition: cv.hpp:9741
MS_isotopic_fit_score
MS_isotopic_fit_score
isotopic fit score: The isotopic fit confidence score.
Definition: cv.hpp:9096
MS_cyclotron_motion_OBSOLETE
MS_cyclotron_motion_OBSOLETE
cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field ...
Definition: cv.hpp:1476
MS_unmodified_peptide_sequence
MS_unmodified_peptide_sequence
unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that comp...
Definition: cv.hpp:3366
UNIMOD_HexNAc_4_
UNIMOD_HexNAc_4_
HexNAc(4): HexNAc(4).
Definition: cv.hpp:12849
MS_Scan_Function_OBSOLETE
MS_Scan_Function_OBSOLETE
Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical ac...
Definition: cv.hpp:312
MS_ProteomeDiscoverer_max_differential_modifications
MS_ProteomeDiscoverer_max_differential_modifications
ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
Definition: cv.hpp:7410
UNIMOD_UgiJoullie
UNIMOD_UgiJoullie
UgiJoullie: Side reaction of HisTag.
Definition: cv.hpp:12057
UNIMOD_Thr__Asn
UNIMOD_Thr__Asn
Thr->Asn: Thr->Asn substitution.
Definition: cv.hpp:10734
UO_foot
UO_foot
foot: A length unit which is equal to 0.3048 metres, or 12 inches.
Definition: cv.hpp:14832
MS_result_list_attribute
MS_result_list_attribute
result list attribute: General property of an entire result list.
Definition: cv.hpp:8553
MS_Phenyx_Score
MS_Phenyx_Score
Phenyx:Score: The protein score of a protein match in Phenyx.
Definition: cv.hpp:4578
UNIMOD_Thr__Gly
UNIMOD_Thr__Gly
Thr->Gly: Thr->Gly substitution.
Definition: cv.hpp:11874
MS_software_specific_input_parameter
MS_software_specific_input_parameter
software specific input parameter: Software specific input parameter.
Definition: cv.hpp:6762
MS_autoflex_II_TOF_TOF
MS_autoflex_II_TOF_TOF
autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
Definition: cv.hpp:5058
UNIMOD_azole
UNIMOD_azole
azole: Formation of five membered aromatic heterocycle.
Definition: cv.hpp:12207
UNIMOD_Glu__Tyr
UNIMOD_Glu__Tyr
Glu->Tyr: Glu->Tyr substitution.
Definition: cv.hpp:11523
UNIMOD_HNE_BAHAH
UNIMOD_HNE_BAHAH
HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
Definition: cv.hpp:11115
UO_dose_equivalent_unit
UO_dose_equivalent_unit
dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its bi...
Definition: cv.hpp:14190
UNIMOD_dHex_2_HexNAc_7_
UNIMOD_dHex_2_HexNAc_7_
dHex(2)HexNAc(7): DHex(2) HexNAc(7).
Definition: cv.hpp:13272
MS_TMT_reagent_128N
MS_TMT_reagent_128N
TMT reagent 128N: The name of the sample labelled with the TMT reagent 128N.
Definition: cv.hpp:8715
UO_millisiemens
UO_millisiemens
millisiemens: An electrical conduction unit which is equal to one thousandth of a siemen or 10^[-3] s...
Definition: cv.hpp:14799
MS_selected_ion_m_z
MS_selected_ion_m_z
selected ion m/z: Mass-to-charge ratio of an selected ion.
Definition: cv.hpp:2901
pwiz::cv::CVTermInfo::exactSynonyms
std::vector< std::string > exactSynonyms
Definition: cv.hpp:14955
MS_DataAnalysis
MS_DataAnalysis
DataAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2826
MS_Phenyx_NumberOfMC
MS_Phenyx_NumberOfMC
Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
Definition: cv.hpp:4599
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_
dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
Definition: cv.hpp:13179
UNIMOD_Gln__Cys
UNIMOD_Gln__Cys
Gln->Cys: Gln->Cys substitution.
Definition: cv.hpp:11787
UNIMOD_Hex_4_HexA_1_HexNAc_1_
UNIMOD_Hex_4_HexA_1_HexNAc_1_
Hex(4)HexA(1)HexNAc(1): Hex(4) HexA HexNAc.
Definition: cv.hpp:13677
MS_Percolator_Validation_based_on
MS_Percolator_Validation_based_on
Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validatio...
Definition: cv.hpp:6726
MS_TopPIC_spectral_cutoff_type
MS_TopPIC_spectral_cutoff_type
TopPIC:spectral cutoff type: Spectrum-level cutoff type for filtering identified proteoform spectrum ...
Definition: cv.hpp:9180
UO_luminous_flux_unit
UO_luminous_flux_unit
luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
Definition: cv.hpp:14154
MS_AA_sequence
MS_AA_sequence
AA sequence: The sequence is a amino acid sequence.
Definition: cv.hpp:4440
UNIMOD_Ethyl
UNIMOD_Ethyl
Ethyl: Ethylation.
Definition: cv.hpp:9855
MS_secondary_electron_OBSOLETE
MS_secondary_electron_OBSOLETE
secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a ...
Definition: cv.hpp:1629
MS_Weierstrass_transform
MS_Weierstrass_transform
Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a on...
Definition: cv.hpp:3030
UO_picoliter
UO_picoliter
picoliter: A volume unit which is equal to 10^[-12] L.
Definition: cv.hpp:14112
MS_Mascot_ShowHomologousProteinsWithSamePeptides
MS_Mascot_ShowHomologousProteinsWithSamePeptides
Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins...
Definition: cv.hpp:4371
UO_Roentgen_equivalent_man
UO_Roentgen_equivalent_man
Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one siev...
Definition: cv.hpp:14220
MS_Accela_PDA
MS_Accela_PDA
Accela PDA: Accela PDA.
Definition: cv.hpp:2535
MS_Mascot_SigThreshold
MS_Mascot_SigThreshold
Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be...
Definition: cv.hpp:4359
MS_sample_preparation
MS_sample_preparation
sample preparation: Properties of the preparation steps which took place before the measurement was p...
Definition: cv.hpp:3189
MS_associative_ionization
MS_associative_ionization
associative ionization: An ionization process in which two excited atoms or molecules react to form a...
Definition: cv.hpp:1716
MS_PeptideShaker_PSM_score
MS_PeptideShaker_PSM_score
PeptideShaker PSM score: The probability based PeptideShaker PSM score.
Definition: cv.hpp:7848
MS_PIA_Combined_FDRScore_calculated
MS_PIA_Combined_FDRScore_calculated
PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA...
Definition: cv.hpp:7623
MS_FDRScore_OBSOLETE
MS_FDRScore_OBSOLETE
FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engi...
Definition: cv.hpp:6036
UNIMOD_NeuAc
UNIMOD_NeuAc
NeuAc: N-acetyl neuraminic acid.
Definition: cv.hpp:12123
UNIMOD_HNE
UNIMOD_HNE
HNE: 4-hydroxynonenal (HNE).
Definition: cv.hpp:9501
MS_DiART_reagent_117
MS_DiART_reagent_117
DiART reagent 117: The name of the sample labelled with the DiART reagent 117.
Definition: cv.hpp:8745
UNIMOD_Acetyl_13C_2_
UNIMOD_Acetyl_13C_2_
Acetyl:13C(2): Heavy acetylation.
Definition: cv.hpp:12237
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spec...
Definition: cv.hpp:5268
MS_filter_string
MS_filter_string
filter string: A string unique to Thermo instrument describing instrument settings for the scan.
Definition: cv.hpp:2142
UNIMOD_Xlink_BuUrBu_196_
UNIMOD_Xlink_BuUrBu_196_
Xlink:BuUrBu[196]: Intact BuUrBu crosslinker.
Definition: cv.hpp:13551
UNIMOD_Ser__His
UNIMOD_Ser__His
Ser->His: Ser->His substitution.
Definition: cv.hpp:11847
MS_PeptideShaker_PTM_confidence_type
MS_PeptideShaker_PTM_confidence_type
PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizat...
Definition: cv.hpp:8070
MS_SpectraST_delta
MS_SpectraST_delta
SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
Definition: cv.hpp:4659
MS_BioTOF_II
MS_BioTOF_II
BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
Definition: cv.hpp:819
UNIMOD_Met__Cys
UNIMOD_Met__Cys
Met->Cys: Met->Cys substitution.
Definition: cv.hpp:11682
MS_featureXML
MS_featureXML
featureXML: OpenMS feature file format.
Definition: cv.hpp:8895
UNIMOD_Hex_2_HexNAc_2_
UNIMOD_Hex_2_HexNAc_2_
Hex(2)HexNAc(2): Hex2HexNAc2.
Definition: cv.hpp:9684
UNIMOD_Xle__Phe
UNIMOD_Xle__Phe
Xle->Phe: Leu/Ile->Phe substitution.
Definition: cv.hpp:10563
UNIMOD_Gly__Lys
UNIMOD_Gly__Lys
Gly->Lys: Gly->Lys substitution.
Definition: cv.hpp:11574
UNIMOD_Xlink_SMCC_237_
UNIMOD_Xlink_SMCC_237_
Xlink:SMCC[237]: Water quenched monolink of SMCC.
Definition: cv.hpp:11343
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_
dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
Definition: cv.hpp:13305
UNIMOD_dHex_3_Hex_2_HexNAc_2_
UNIMOD_dHex_3_Hex_2_HexNAc_2_
dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
Definition: cv.hpp:13023
UNIMOD_Hex_2_HexNAc_1_Sulf_1_
UNIMOD_Hex_2_HexNAc_1_Sulf_1_
Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
Definition: cv.hpp:12414
MS_PAnalyzer_non_conclusive_protein
MS_PAnalyzer_non_conclusive_protein
PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive o...
Definition: cv.hpp:7092
MS_ISB_mzXML_format
MS_ISB_mzXML_format
ISB mzXML format: Institute of Systems Biology mzXML file format.
Definition: cv.hpp:2307
UNIMOD_TAMRA_FP
UNIMOD_TAMRA_FP
TAMRA-FP: TAMRA fluorophosphonate modification of serine.
Definition: cv.hpp:11373
MS_ProteoAnnotator_non_canonical_gene_model_score
MS_ProteoAnnotator_non_canonical_gene_model_score
ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped o...
Definition: cv.hpp:7872
MS_local_FLR_at_threshold
MS_local_FLR_at_threshold
local FLR at threshold: Local false localization rate for the bottom item in list of localizations so...
Definition: cv.hpp:8535
MS_total_ion_current_chromatogram
MS_total_ion_current_chromatogram
total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in e...
Definition: cv.hpp:1107
UNIMOD_Hex_7_HexNAc_4_
UNIMOD_Hex_7_HexNAc_4_
Hex(7)HexNAc(4): Hex(7) HexNAc(4).
Definition: cv.hpp:12732
UNIMOD_PhosphoHexNAc
UNIMOD_PhosphoHexNAc
PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
Definition: cv.hpp:10191
MS_mass_selective_axial_ejection_OBSOLETE
MS_mass_selective_axial_ejection_OBSOLETE
mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z va...
Definition: cv.hpp:1503
UNIMOD_Palmitoleyl
UNIMOD_Palmitoleyl
Palmitoleyl: Palmitoleyl.
Definition: cv.hpp:10197
UNIMOD_Hex_2_HexNAc_2_Sulf_1_
UNIMOD_Hex_2_HexNAc_2_Sulf_1_
Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:12843
MS_16_bit_float_OBSOLETE
MS_16_bit_float_OBSOLETE
16-bit float: Signed 16-bit float.
Definition: cv.hpp:2166
UNIMOD_Hex_1_HexNAc_3_Sulf_1_
UNIMOD_Hex_1_HexNAc_3_Sulf_1_
Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
Definition: cv.hpp:12870
MS_wavelength_OBSOLETE
MS_wavelength_OBSOLETE
wavelength: The distance between two peaks of the emitted laser beam.
Definition: cv.hpp:3225
UNIMOD_Hex_5_HexNAc_3_Pent_1_
UNIMOD_Hex_5_HexNAc_3_Pent_1_
Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
Definition: cv.hpp:12531
UNIMOD_Iodoacetanilide_13C_6_
UNIMOD_Iodoacetanilide_13C_6_
Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
Definition: cv.hpp:12306
MS_OpenXQuest_xcorr_common
MS_OpenXQuest_xcorr_common
OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.
Definition: cv.hpp:8508
MS_frag__TMT_reporter_ion
MS_frag__TMT_reporter_ion
frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the T...
Definition: cv.hpp:8469
UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_
UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_
dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
Definition: cv.hpp:13137
UO_bit
UO_bit
bit: An information unit which refers to a digit in the binary numeral system, which consists of base...
Definition: cv.hpp:14493
MS_journal_article_keyword
MS_journal_article_keyword
journal article keyword: Keyword present in a scientific publication.
Definition: cv.hpp:6192
UO_nautical_mile
UO_nautical_mile
nautical mile: A maritime length unit which is equal to 6,080 feet, 10 cables, or 1,...
Definition: cv.hpp:14859
MS_search_engine_specific_input_parameter
MS_search_engine_specific_input_parameter
search engine specific input parameter: Search engine specific input parameters.
Definition: cv.hpp:4308
UNIMOD_Thr__Gln
UNIMOD_Thr__Gln
Thr->Gln: Thr->Gln substitution.
Definition: cv.hpp:11880
MS_search_time_taken
MS_search_time_taken
search time taken: The time taken to complete the search in seconds.
Definition: cv.hpp:3600
MS_TOPP_ConsensusMapNormalizer
MS_TOPP_ConsensusMapNormalizer
TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
Definition: cv.hpp:6963
MS_glyco_TMT_quantitation_analysis
MS_glyco_TMT_quantitation_analysis
glyco-TMT quantitation analysis: Quantitation analysis using the Thermo Fisher carbonyl-reactive glyc...
Definition: cv.hpp:8691
MS_API_100LC
MS_API_100LC
API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
Definition: cv.hpp:8211
MS_autoionization
MS_autoionization
autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy g...
Definition: cv.hpp:1725
MS_Isotopologue_ion_OBSOLETE
MS_Isotopologue_ion_OBSOLETE
Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constitu...
Definition: cv.hpp:1671
UNIMOD_HexA_2_HexNAc_3_
UNIMOD_HexA_2_HexNAc_3_
HexA(2)HexNAc(3): HexA(2) HexNAc(3).
Definition: cv.hpp:13668
MS_reporter_ion_intensity
MS_reporter_ion_intensity
reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
Definition: cv.hpp:5955
UO_nanomolar
UO_nanomolar
nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9]...
Definition: cv.hpp:13998
MS_radical_ion_OBSOLETE
MS_radical_ion_OBSOLETE
radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state....
Definition: cv.hpp:1701
MS_spectrum_type
MS_spectrum_type
spectrum type: Spectrum type.
Definition: cv.hpp:2286
MS_SEQUEST_PeptideIdnumber
MS_SEQUEST_PeptideIdnumber
SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
Definition: cv.hpp:4083
MS_submitter_keyword
MS_submitter_keyword
submitter keyword: Keyword assigned by the data submitter.
Definition: cv.hpp:6195
PEFF_Length
PEFF_Length
Length: Sequence length.
Definition: cv.hpp:192
UO_enzyme_unit
UO_enzyme_unit
enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the ...
Definition: cv.hpp:14340
MS_electrostatic_energy_analyzer
MS_electrostatic_energy_analyzer
electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinder...
Definition: cv.hpp:1218
UO_hectare
UO_hectare
hectare: An area unit which is equal to an area of 10,000 square meters. Equivalent to 2....
Definition: cv.hpp:14823
UO_dimensionless_unit
UO_dimensionless_unit
dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a nume...
Definition: cv.hpp:14355
UNIMOD_Met__Lys
UNIMOD_Met__Lys
Met->Lys: Met->Lys substitution.
Definition: cv.hpp:10593
UNIMOD_ICPL
UNIMOD_ICPL
ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
Definition: cv.hpp:10035
MS_Negative_Ion_chemical_ionization
MS_Negative_Ion_chemical_ionization
Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
Definition: cv.hpp:1323
MS_preprocessing_software
MS_preprocessing_software
preprocessing software: Preprocessing software.
Definition: cv.hpp:7608
MS_Comet_sprank
MS_Comet_sprank
Comet:sprank: The Comet result 'SpRank'.
Definition: cv.hpp:7215
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the mea...
Definition: cv.hpp:5316
UNIMOD_NHS_fluorescein
UNIMOD_NHS_fluorescein
NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
Definition: cv.hpp:12285
UO_cubic_meter_per_mole
UO_cubic_meter_per_mole
cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a s...
Definition: cv.hpp:14070
UO_pint
UO_pint
pint: An imperial volume unit which is equivalent to 568.261,25 millilitres.
Definition: cv.hpp:14877
MS_DB_source_NCBI
MS_DB_source_NCBI
DB source NCBI: Database source NCBI.
Definition: cv.hpp:4185
MS_internal_reference_abundance
MS_internal_reference_abundance
internal reference abundance: The absolute abundance of the spiked in reference peptide or protein us...
Definition: cv.hpp:8001
MS_Waters_instrument_model
MS_Waters_instrument_model
Waters instrument model: Waters Corporation instrument model.
Definition: cv.hpp:717
UO_unit_per_liter
UO_unit_per_liter
unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount p...
Definition: cv.hpp:14334
UO_prefix
UO_prefix
prefix:
Definition: cv.hpp:13941
MS_ion_mobility_attribute
MS_ion_mobility_attribute
ion mobility attribute: An attribute describing ion mobility searches.
Definition: cv.hpp:9099
MS_ICPL_reagent_10
MS_ICPL_reagent_10
ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
Definition: cv.hpp:8283
MS_protein_group_level_confidence
MS_protein_group_level_confidence
protein group-level confidence: Estimation of the global confidence of protein groups.
Definition: cv.hpp:7833
UNIMOD_Phe__His
UNIMOD_Phe__His
Phe->His: Phe->His substitution.
Definition: cv.hpp:11538
UNIMOD_dHex_1_HexNAc_3_
UNIMOD_dHex_1_HexNAc_3_
dHex(1)HexNAc(3): DHex HexNAc(3).
Definition: cv.hpp:12816
MS_command_line_parameters
MS_command_line_parameters
command-line parameters: Parameters string passed to a command-line interface software application,...
Definition: cv.hpp:6069
UNIMOD_dHex_2_Hex_2_
UNIMOD_dHex_2_Hex_2_
dHex(2)Hex(2): Hex2 dHex2.
Definition: cv.hpp:12420
UO_gill
UO_gill
gill: An imperial volume unit which is equivalent to 142.065,3125 millilitres.
Definition: cv.hpp:14874
UNIMOD_Propiophenone
UNIMOD_Propiophenone
Propiophenone: Propiophenone.
Definition: cv.hpp:12135
UNIMOD_Deamidated
UNIMOD_Deamidated
Deamidated: Deamidation.
Definition: cv.hpp:9390
MS_low_intensity_threshold
MS_low_intensity_threshold
low intensity threshold: Threshold below which some action is taken.
Definition: cv.hpp:2559
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
Definition: cv.hpp:13083
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of...
Definition: cv.hpp:5319
MS_frag__x_ion___NH3
MS_frag__x_ion___NH3
frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
Definition: cv.hpp:4965
MS_MetaMorpheus_score
MS_MetaMorpheus_score
MetaMorpheus:score: MetaMorpheus score for PSMs.
Definition: cv.hpp:8904
UO_maritime_length_unit
UO_maritime_length_unit
maritime length unit: A maritime length unit is one used primarily at sea.
Definition: cv.hpp:14850
UNIMOD_Hydroxyfarnesyl
UNIMOD_Hydroxyfarnesyl
Hydroxyfarnesyl: Hydroxyfarnesyl.
Definition: cv.hpp:10059
MS_FileMerger
MS_FileMerger
FileMerger: Merges several MS files into one file.
Definition: cv.hpp:2943
UNIMOD_dHex_1_Hex_5_HexNAc_4_
UNIMOD_dHex_1_Hex_5_HexNAc_4_
dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
Definition: cv.hpp:9915
MS_DB_PI_filter
MS_DB_PI_filter
DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI),...
Definition: cv.hpp:3567
MS_Phenyx_ID
MS_Phenyx_ID
Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4575
MS_Phenyx_Turbo_Series
MS_Phenyx_Turbo_Series
Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
Definition: cv.hpp:4554
UNIMOD_Hex_2_HexNAc_3_NeuAc_3_
UNIMOD_Hex_2_HexNAc_3_NeuAc_3_
Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
Definition: cv.hpp:13290
UNIMOD_Hex_4_HexNAc_4_Pent_1_
UNIMOD_Hex_4_HexNAc_4_Pent_1_
Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:12552
MS_SEQUEST_sp
MS_SEQUEST_sp
SEQUEST:sp: The SEQUEST result 'Sp' (protein).
Definition: cv.hpp:3930
UNIMOD_Phospho
UNIMOD_Phospho
Phospho: Phosphorylation.
Definition: cv.hpp:9417
MS_appearance_energy_OBSOLETE
MS_appearance_energy_OBSOLETE
appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a speci...
Definition: cv.hpp:1002
MS_TOPP_IDRTCalibration
MS_TOPP_IDRTCalibration
TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
Definition: cv.hpp:7026
MS_protein_level_p_value
MS_protein_level_p_value
protein-level p-value: Estimation of the p-value for proteins.
Definition: cv.hpp:6027
MS_paul_ion_trap_OBSOLETE
MS_paul_ion_trap_OBSOLETE
paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage....
Definition: cv.hpp:1452
MS_4700_Proteomics_Analyzer
MS_4700_Proteomics_Analyzer
4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
Definition: cv.hpp:786
UNIMOD_Hex_8_HexNAc_1_
UNIMOD_Hex_8_HexNAc_1_
Hex(8)HexNAc(1): Hex(8) HexNAc.
Definition: cv.hpp:12504
UNIMOD_Trp__Cys
UNIMOD_Trp__Cys
Trp->Cys: Trp->Cys substitution.
Definition: cv.hpp:10776
MS_mass_spectrometry_mass_spectrometry_OBSOLETE
MS_mass_spectrometry_mass_spectrometry_OBSOLETE
mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged p...
Definition: cv.hpp:1311
MS_PASSEL_experiment_URI
MS_PASSEL_experiment_URI
PASSEL experiment URI: URI that allows access to a PASSEL experiment.
Definition: cv.hpp:7710
MS_MSPathFinder_RawScore
MS_MSPathFinder_RawScore
MSPathFinder:RawScore: MSPathFinder raw score.
Definition: cv.hpp:8595
UNIMOD_methylol
UNIMOD_methylol
methylol: Formaldehyde induced modifications.
Definition: cv.hpp:13503
MS_TopPIC_fixed_modification
MS_TopPIC_fixed_modification
TopPIC:fixed modification: Fixed modifications for TopPIC searching.
Definition: cv.hpp:9162
UNIMOD_Delta_H_2_C_5_
UNIMOD_Delta_H_2_C_5_
Delta:H(2)C(5): MDA adduct +62.
Definition: cv.hpp:9939
MS______FYWLKR_____P_
MS______FYWLKR_____P_
(?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
Definition: cv.hpp:4422
MS_hydrogen_deuterium_exchange_OBSOLETE
MS_hydrogen_deuterium_exchange_OBSOLETE
hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-for...
Definition: cv.hpp:1848
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD,...
Definition: cv.hpp:5226
MS_atmospheric_pressure_chemical_ionization
MS_atmospheric_pressure_chemical_ionization
atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressur...
Definition: cv.hpp:489
UNIMOD_Trp__Met
UNIMOD_Trp__Met
Trp->Met: Trp->Met substitution.
Definition: cv.hpp:11943
UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_
UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_
dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc —OR— Hex(4) HexNAc(2) dHex NeuAc.
Definition: cv.hpp:13197
MS_multiple_peak_list_nativeID_format__combined_spectra
MS_multiple_peak_list_nativeID_format__combined_spectra
multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been ...
Definition: cv.hpp:8418
MS_modified_nucleic_acid_sequence
MS_modified_nucleic_acid_sequence
modified nucleic acid sequence: Specification of the modified nucleic acid sequence....
Definition: cv.hpp:6534
MS_mass_unit_OBSOLETE
MS_mass_unit_OBSOLETE
mass unit: A unit of measurement for mass.
Definition: cv.hpp:1989
MS_file_format
MS_file_format
file format: Format of data files.
Definition: cv.hpp:4776
MS_OpenXQuest_wTIC
MS_OpenXQuest_wTIC
OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.
Definition: cv.hpp:8517
pwiz::cv::CVTermInfo::CVTermInfo
CVTermInfo()
Definition: cv.hpp:14958
UNIMOD_Hex_5_HexNAc_4_NeuGc_1_
UNIMOD_Hex_5_HexNAc_4_NeuGc_1_
Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
Definition: cv.hpp:12720
UNIMOD_Propionamide
UNIMOD_Propionamide
Propionamide: Acrylamide adduct.
Definition: cv.hpp:9423
MS_distinct_peptide_sequences
MS_distinct_peptide_sequences
distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a mi...
Definition: cv.hpp:3750
MS_regular_expression_for_interaction_scores_derived_from_cross_linking
MS_regular_expression_for_interaction_scores_derived_from_cross_linking
)).
Definition: cv.hpp:8454
MS_modification_specificity_protein_N_term
MS_modification_specificity_protein_N_term
modification specificity protein N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6621
UNIMOD_Delta_H_3_C_3_O_2_
UNIMOD_Delta_H_3_C_3_O_2_
Delta:H(3)C(3)O(2): Methylglyoxal-derived carboxyethyllysine.
Definition: cv.hpp:13620
MS_TopMG_spectral_p_value
MS_TopMG_spectral_p_value
TopMG:spectral p-value: TopMG spectrum-level p-value.
Definition: cv.hpp:9282
MS_Linked_Scan_at_Constant_E2_V_OBSOLETE
MS_Linked_Scan_at_Constant_E2_V_OBSOLETE
Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at lea...
Definition: cv.hpp:1563
MS_MaxQuant_Phospho__STY__Probabilities
MS_MaxQuant_Phospho__STY__Probabilities
MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
Definition: cv.hpp:6369
UNIMOD_Phosphoguanosine
UNIMOD_Phosphoguanosine
Phosphoguanosine: Phospho-guanosine.
Definition: cv.hpp:10152
PEFF_Prefix
PEFF_Prefix
Prefix: Sequence Database Prefix.
Definition: cv.hpp:132
MS_PIA_protein_inference_used_PSMs
MS_PIA_protein_inference_used_PSMs
PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inf...
Definition: cv.hpp:7647
UNIMOD_Biotin_Sigma_B1267
UNIMOD_Biotin_Sigma_B1267
Biotin:Sigma-B1267: Was Biotin-maleimide.
Definition: cv.hpp:11265
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
Definition: cv.hpp:5370
UNIMOD_LG_anhyropyrrole
UNIMOD_LG_anhyropyrrole
LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
Definition: cv.hpp:11181
MS_Data_derived_from_previous_dataset
MS_Data_derived_from_previous_dataset
Data derived from previous dataset: One dataset is a reanalysis of previously published data.
Definition: cv.hpp:9012
pwiz::cv::cvIsA
PWIZ_API_DECL bool cvIsA(CVID child, CVID parent)
returns true iff child IsA parent in the CV
MS_peptide_consensus_list_attribute
MS_peptide_consensus_list_attribute
peptide consensus list attribute: Attribute describing a peptide consensus list.
Definition: cv.hpp:6792
UNIMOD_QQQTGG
UNIMOD_QQQTGG
QQQTGG: SUMOylation by SUMO-2/3.
Definition: cv.hpp:11034
MS_Progenesis_manual_alignment
MS_Progenesis_manual_alignment
Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
Definition: cv.hpp:6012
MS_NRMS
MS_NRMS
NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neu...
Definition: cv.hpp:1332
UNIMOD_Label_13C_5_
UNIMOD_Label_13C_5_
Label:13C(5): 13C(5) Silac label.
Definition: cv.hpp:10935
MS_Bruker_Container_format
MS_Bruker_Container_format
Bruker Container format: Bruker Container raw file format.
Definition: cv.hpp:7356
MS_ProteomeDiscoverer_Maximum_Delta_Cn
MS_ProteomeDiscoverer_Maximum_Delta_Cn
ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
Definition: cv.hpp:6723
MS_MRM_spectrum
MS_MRM_spectrum
MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corr...
Definition: cv.hpp:2394
MS_prolate_traochoidal_mass_spectrometer_OBSOLETE
MS_prolate_traochoidal_mass_spectrometer_OBSOLETE
prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are sep...
Definition: cv.hpp:1455
PEFF_Decoy
PEFF_Decoy
Decoy: Specifies whether the Sequence Database is a Decoy.
Definition: cv.hpp:138
MS_TSQ
MS_TSQ
TSQ: ThermoFinnigan TSQ MS.
Definition: cv.hpp:2919
UNIMOD_Hex_2_Sulf_1_
UNIMOD_Hex_2_Sulf_1_
Hex(2)Sulf(1): Hex(2) O(3) S.
Definition: cv.hpp:13638
MS_IE_OBSOLETE
MS_IE_OBSOLETE
IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to...
Definition: cv.hpp:1047
UO_volt_hour
UO_volt_hour
volt-hour: A magnetic flux unit which is equal to 3600 Wb.
Definition: cv.hpp:14484
MS_de_novo_search
MS_de_novo_search
de novo search: A de novo sequencing search (without database).
Definition: cv.hpp:3528
MS_space_charge_effect
MS_space_charge_effect
space charge effect: The mutual repulsion of particles of like charge that limits the current in a ch...
Definition: cv.hpp:1518
MS_Thermo_nativeID_format
MS_Thermo_nativeID_format
Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumb...
Definition: cv.hpp:2976
UO_millisievert
UO_millisievert
millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
Definition: cv.hpp:14214
MS_volt_second_per_square_centimeter
MS_volt_second_per_square_centimeter
volt-second per square centimeter: An electrical mobility unit that equals the speed [cm/s] an ion re...
Definition: cv.hpp:8862
MS_three_sample_run
MS_three_sample_run
three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
Definition: cv.hpp:5874
MS_mzML_format
MS_mzML_format
mzML format: Proteomics Standards Inititative mzML file format.
Definition: cv.hpp:2403
UNIMOD_Met__Val
UNIMOD_Met__Val
Met->Val: Met->Val substitution.
Definition: cv.hpp:10599
MS_FASTA_format
MS_FASTA_format
FASTA format: The sequence database was stored in the FASTA format.
Definition: cv.hpp:4452
UO_league
UO_league
league: A length unit which is equal to 3 miles, or 4,828.032 metres
Definition: cv.hpp:14847
MS_LCQ_Advantage
MS_LCQ_Advantage
LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
Definition: cv.hpp:867
MS_protein_list_attribute
MS_protein_list_attribute
protein list attribute: Attribute describing a protein list.
Definition: cv.hpp:6789
MS_flexImaging
MS_flexImaging
flexImaging: Bruker software for data analysis.
Definition: cv.hpp:2835
MS_spectrum_generation_information
MS_spectrum_generation_information
spectrum generation information: Vocabularies describing the spectrum generation information.
Definition: cv.hpp:4773
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer applicat...
Definition: cv.hpp:5460
MS_ProteomeDiscoverer_Strict_Score_Threshold
MS_ProteomeDiscoverer_Strict_Score_Threshold
ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
Definition: cv.hpp:7584
MS_TOPP_EICExtractor
MS_TOPP_EICExtractor
TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
Definition: cv.hpp:6939
MS_PSM_level_quantification_datatype
MS_PSM_level_quantification_datatype
PSM-level quantification datatype: The data type of the value reported in a QuantLayer for a PSM.
Definition: cv.hpp:8628
MS_PolyTools
MS_PolyTools
PolyTools: Bruker PolyTools software.
Definition: cv.hpp:2850
UNIMOD_Hex_1_HexNAc_1_
UNIMOD_Hex_1_HexNAc_1_
Hex(1)HexNAc(1): Hex1HexNAc1.
Definition: cv.hpp:10953
MS_constant_neutral_loss_scan_OBSOLETE
MS_constant_neutral_loss_scan_OBSOLETE
constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
Definition: cv.hpp:1530
MS_8800_Triple_Quadrupole_ICP_MS
MS_8800_Triple_Quadrupole_ICP_MS
8800 Triple Quadrupole ICP-MS: The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plas...
Definition: cv.hpp:8835
MS_UNIFY
MS_UNIFY
UNIFY: Waters UNIFY software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5799
UNIMOD_Gly__Glu
UNIMOD_Gly__Glu
Gly->Glu: Gly->Glu substitution.
Definition: cv.hpp:10500
MS_SEQUEST_SQT_format
MS_SEQUEST_SQT_format
SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
Definition: cv.hpp:5088
MS_technical_replicate
MS_technical_replicate
technical replicate: The study variable is 'technical replicate'. The string value denotes the catego...
Definition: cv.hpp:5838
MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE
MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE
decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
Definition: cv.hpp:6633
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to b...
Definition: cv.hpp:5391
MS_spectrum_instrument_description_OBSOLETE
MS_spectrum_instrument_description_OBSOLETE
spectrum instrument description: Terms used to describe the spectrum.
Definition: cv.hpp:1971
UNIMOD_DAET
UNIMOD_DAET
DAET: Phosphorylation to amine thiol.
Definition: cv.hpp:9726
MS_TOFCalibration
MS_TOFCalibration
TOFCalibration: Applies time of flight calibration.
Definition: cv.hpp:2967
MS_gaseous_sample_state
MS_gaseous_sample_state
gaseous sample state: State if the sample is in gaseous form.
Definition: cv.hpp:420
UNIMOD_Gly__Pro
UNIMOD_Gly__Pro
Gly->Pro: Gly->Pro substitution.
Definition: cv.hpp:11583
MS_Phenyx_User
MS_Phenyx_User
Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
Definition: cv.hpp:4590
MS_frag__y_ion___NH3
MS_frag__y_ion___NH3
frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
Definition: cv.hpp:4131
UNIMOD_Hex_4_HexNAc_4_
UNIMOD_Hex_4_HexNAc_4_
Hex(4)HexNAc(4): Biantennary (-1 galactose).
Definition: cv.hpp:9921
MS_protein_group_level_global_FNR
MS_protein_group_level_global_FNR
protein group-level global FNR: Estimation of the global false negative rate of protein groups.
Definition: cv.hpp:7830
UO_watt_per_square_meter
UO_watt_per_square_meter
watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one ...
Definition: cv.hpp:14262
UNIMOD_dHex_1_Hex_2_
UNIMOD_dHex_1_Hex_2_
dHex(1)Hex(2): Hex2dHex1.
Definition: cv.hpp:12240
MS_MGF_scans_OBSOLETE
MS_MGF_scans_OBSOLETE
MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute...
Definition: cv.hpp:4641
UNIMOD_Xlink_EGS_115_
UNIMOD_Xlink_EGS_115_
Xlink:EGS[115]: Cleavage product of EGS protein crosslinks by hydroylamine treatment.
Definition: cv.hpp:11349
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications se...
Definition: cv.hpp:5523
UNIMOD_His__Tyr
UNIMOD_His__Tyr
His->Tyr: His->Tyr substitution.
Definition: cv.hpp:10518
MS_exponential
MS_exponential
exponential: The mass scan is done in exponential mode.
Definition: cv.hpp:597
UNIMOD_Trp__Tyr
UNIMOD_Trp__Tyr
Trp->Tyr: Trp->Tyr substitution.
Definition: cv.hpp:11961
MS_phosphoRS_site_probability_threshold
MS_phosphoRS_site_probability_threshold
phosphoRS site probability threshold: Threshold for phosphoRS site probability.
Definition: cv.hpp:8157
MS_atmospheric_pressure_ionization
MS_atmospheric_pressure_ionization
atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at ...
Definition: cv.hpp:1134
MS_electromagnetic_radiation_chromatogram
MS_electromagnetic_radiation_chromatogram
electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function o...
Definition: cv.hpp:3129
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for ...
Definition: cv.hpp:5475
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for ...
Definition: cv.hpp:5472
UNIMOD_Phe__Ser
UNIMOD_Phe__Ser
Phe->Ser: Phe->Ser substitution.
Definition: cv.hpp:10476
MS_value_between_0_and_1_inclusive
MS_value_between_0_and_1_inclusive
value between 0 and 1 inclusive: Value range for probabilities.
Definition: cv.hpp:7365
MS_frag__x_ion___H2O
MS_frag__x_ion___H2O
frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
Definition: cv.hpp:4962
UNIMOD_Can_FP_biotin
UNIMOD_Can_FP_biotin
Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
Definition: cv.hpp:9969
UNIMOD_dHex_1_Hex_5_
UNIMOD_dHex_1_Hex_5_
dHex(1)Hex(5): Hex5dHex1.
Definition: cv.hpp:12249
MS_SEQUEST_deltacn
MS_SEQUEST_deltacn
SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
Definition: cv.hpp:3927
MS_iTRAQ_reagent_117
MS_iTRAQ_reagent_117
iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
Definition: cv.hpp:8334
MS_IdentityE_XML_format
MS_IdentityE_XML_format
IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
Definition: cv.hpp:5094
MS_m_z_difference
MS_m_z_difference
m/z difference (delta m/z): The difference between a theoretically calculated m/z and the correspondi...
Definition: cv.hpp:6351
MS_external_reference_data
MS_external_reference_data
external reference data: Data belonging to an external reference.
Definition: cv.hpp:8943
UO_parts_per_notation_unit
UO_parts_per_notation_unit
parts per notation unit: A dimensionless concentration notation which describes the amount of one sub...
Definition: cv.hpp:14295
UNIMOD_PyMIC
UNIMOD_PyMIC
PyMIC: 3-methyl-2-pyridyl isocyanate.
Definition: cv.hpp:10311
UNIMOD_O_Isopropylmethylphosphonate
UNIMOD_O_Isopropylmethylphosphonate
O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
Definition: cv.hpp:10854
UNIMOD_Label_2H_4_
UNIMOD_Label_2H_4_
Label:2H(4): 4,4,5,5-D4 Lysine.
Definition: cv.hpp:10284
MS_Xevo_TQ_MS
MS_Xevo_TQ_MS
Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
Definition: cv.hpp:5784
MS_LD_OBSOLETE
MS_LD_OBSOLETE
LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or wi...
Definition: cv.hpp:1296
UO_molar_volume_unit
UO_molar_volume_unit
molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance contai...
Definition: cv.hpp:13971
MS_PeptideShaker_PSM_confidence_type
MS_PeptideShaker_PSM_confidence_type
PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.
Definition: cv.hpp:8073
MS_isomer
MS_isomer
isomer: One of several species (or molecular entities) that have the same atomic composition (molecul...
Definition: cv.hpp:9300
MS_resonance_ion_ejection_OBSOLETE
MS_resonance_ion_ejection_OBSOLETE
resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary ra...
Definition: cv.hpp:1515
UNIMOD_Hex_4_HexNAc_6_
UNIMOD_Hex_4_HexNAc_6_
Hex(4)HexNAc(6): Hex(4) HexNAc(6).
Definition: cv.hpp:12681
MS_frag__iTRAQ_8plex_reporter_ion
MS_frag__iTRAQ_8plex_reporter_ion
frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integ...
Definition: cv.hpp:8466
MS_Trypsin_P
MS_Trypsin_P
Trypsin/P: Cleavage agent Trypsin/P.
Definition: cv.hpp:4350
MS_mzML_unique_identifier__combined_spectra
MS_mzML_unique_identifier__combined_spectra
mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined pri...
Definition: cv.hpp:8430
UNIMOD_Hex_4_HexNAc_5_
UNIMOD_Hex_4_HexNAc_5_
Hex(4)HexNAc(5): Hex(4) HexNAc(5).
Definition: cv.hpp:12573
MS_Progenesis_protein_group_raw_abundance
MS_Progenesis_protein_group_raw_abundance
Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Pr...
Definition: cv.hpp:8007
MS_frag__b_ion___H2O
MS_frag__b_ion___H2O
frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
Definition: cv.hpp:4092
MS_SCIEX_instrument_model
MS_SCIEX_instrument_model
SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems an...
Definition: cv.hpp:702
UNIMOD_Dimethyl_2H_6_
UNIMOD_Dimethyl_2H_6_
Dimethyl:2H(6): Dimethyl-Medium.
Definition: cv.hpp:12093
MS_NIST_MSP_format
MS_NIST_MSP_format
NIST MSP format: MSP text format defined by the NIST.
Definition: cv.hpp:8673
MS_positive_mode_adduct_ion
MS_positive_mode_adduct_ion
positive mode adduct ion: Adduct ion with positive ionization.
Definition: cv.hpp:8841
UO_luminous_intensity_unit
UO_luminous_intensity_unit
luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted ...
Definition: cv.hpp:13824
MS_Collision_cell_exit_potential
MS_Collision_cell_exit_potential
Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrume...
Definition: cv.hpp:6252
MS_spectral_library_search
MS_spectral_library_search
spectral library search: A search using a library of spectra.
Definition: cv.hpp:3591
UNIMOD_Tween20
UNIMOD_Tween20
Tween20: Tween 20 synthetic polymer terminus.
Definition: cv.hpp:13449
UNIMOD_Lipoyl
UNIMOD_Lipoyl
Lipoyl: Lipoyl.
Definition: cv.hpp:9468
MS_mzML_unique_identifier
MS_mzML_unique_identifier
mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
Definition: cv.hpp:4995
MS_4700_Explorer
MS_4700_Explorer
4700 Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2217
MS_detector_acquisition_mode
MS_detector_acquisition_mode
detector acquisition mode: Method by which detector signal is acquired by the data system.
Definition: cv.hpp:345
UO_dalton
UO_dalton
dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the ...
Definition: cv.hpp:14460
MS_isotopomer_peak_OBSOLETE
MS_isotopomer_peak_OBSOLETE
isotopomer peak: Identifies a peak when no de-isotoping has been performed. The value slot reports th...
Definition: cv.hpp:9114
MS_Unsupported_dataset_by_repository
MS_Unsupported_dataset_by_repository
Unsupported dataset by repository: The PX dataset is not fully supported by the submission repository...
Definition: cv.hpp:8994
UNIMOD_AMTzHexNAc2
UNIMOD_AMTzHexNAc2
AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
Definition: cv.hpp:11142
UNIMOD_Met__Gly
UNIMOD_Met__Gly
Met->Gly: Met->Gly substitution.
Definition: cv.hpp:11694
MS_Shimadzu_MALDI_7090
MS_Shimadzu_MALDI_7090
Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
Definition: cv.hpp:7596
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score...
Definition: cv.hpp:5454
MS_ProteinExtractor_MaxProteinMass
MS_ProteinExtractor_MaxProteinMass
ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
Definition: cv.hpp:4683
MS_percolator_score
MS_percolator_score
percolator:score: Percolator:score.
Definition: cv.hpp:4881
UNIMOD_AROD
UNIMOD_AROD
AROD: Cysteine modifier.
Definition: cv.hpp:11154
MS_Paragon_score
MS_Paragon_score
Paragon:score: The Paragon result 'Score'.
Definition: cv.hpp:3957
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_
dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc —OR— Hex(2) HexNAc(4) dHex(2) Kdn.
Definition: cv.hpp:13263
UNIMOD_Hex_3_HexNAc_1_HexA_1_
UNIMOD_Hex_3_HexNAc_1_HexA_1_
Hex(3)HexNAc(1)HexA(1): Hex(3) HexNAc HexA.
Definition: cv.hpp:13662
MS_TopPIC_spectral_FDR
MS_TopPIC_spectral_FDR
TopPIC:spectral FDR: TopPIC spectrum-level FDR.
Definition: cv.hpp:9210
MS_SRM_peptide_level_quantitation
MS_SRM_peptide_level_quantitation
SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
Definition: cv.hpp:7293
MS_fragment_mass_type_mono
MS_fragment_mass_type_mono
fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
Definition: cv.hpp:4194
MS_protein_group_level_identification_attribute
MS_protein_group_level_identification_attribute
protein group-level identification attribute: Protein group level information.
Definition: cv.hpp:7488
UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_
UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_
dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn —OR— Hex(3) HexNAc(2) dHex(3) NeuAc.
Definition: cv.hpp:13248
UO_purity_percentage
UO_purity_percentage
purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
Definition: cv.hpp:14376
MS_Multiple_Ion_Monitoring
MS_Multiple_Ion_Monitoring
Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the ...
Definition: cv.hpp:984
UO_ton_per_hectare
UO_ton_per_hectare
ton per hectare: An area density unit which is equal to the mass of an object in tons divided by the ...
Definition: cv.hpp:14766
UNIMOD_15N_oxobutanoic
UNIMOD_15N_oxobutanoic
15N-oxobutanoic: Loss of ammonia (15N).
Definition: cv.hpp:12348
MS_average_product_ion_intensity
MS_average_product_ion_intensity
average product ion intensity: Average value of product ion intensity in a collection of identified s...
Definition: cv.hpp:7122
MS_phosphoRS_sequence_probability
MS_phosphoRS_sequence_probability
phosphoRS sequence probability: Probability that the respective isoform is correct.
Definition: cv.hpp:6333
MS_SEQUEST_Consensus
MS_SEQUEST_Consensus
SEQUEST:Consensus: Specify depth as value of the CVParam.
Definition: cv.hpp:3606
UO_square_micrometer
UO_square_micrometer
square micrometer: An area unit which is equal to an area enclosed by a square with sides each 1 micr...
Definition: cv.hpp:14796
UNIMOD_Propyl_2H_6_
UNIMOD_Propyl_2H_6_
Propyl:2H(6): Propyl:2H(6).
Definition: cv.hpp:12132
MS_Bruker_Container_nativeID_format
MS_Bruker_Container_nativeID_format
Bruker Container nativeID format: Native identifier (UUID).
Definition: cv.hpp:7359
MS_protein_group_attribute
MS_protein_group_attribute
protein group attribute: Attribute describing a protein group.
Definition: cv.hpp:6786
UO_catalytic__activity__concentration_unit
UO_catalytic__activity__concentration_unit
catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amou...
Definition: cv.hpp:14403
MS_percent_collision_energy_ramp_end
MS_percent_collision_energy_ramp_end
percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percen...
Definition: cv.hpp:7104
UNIMOD_Biotin_Thermo_21911
UNIMOD_Biotin_Thermo_21911
Biotin:Thermo-21911: Biotin-PEG11-maleimide.
Definition: cv.hpp:12183
MS_ProteinExtractor_SequestUniqueScore
MS_ProteinExtractor_SequestUniqueScore
ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide ...
Definition: cv.hpp:4710
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
Definition: cv.hpp:12894
MS_membrane_inlet
MS_membrane_inlet
membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly t...
Definition: cv.hpp:1758
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_
Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc —OR— dHex Hex HexNAc(2) NeuGc.
Definition: cv.hpp:12435
MS_t_test
MS_t_test
t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired,...
Definition: cv.hpp:6660
UO_deciliter
UO_deciliter
deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
Definition: cv.hpp:14424
UO_cell_concentration_unit
UO_cell_concentration_unit
cell concentration unit: A concentration unit which denotes the average cell number in a given volume...
Definition: cv.hpp:14397
MS_MSQuant
MS_MSQuant
MSQuant: MSQuant software.
Definition: cv.hpp:6360
UNIMOD_Xle__Asn
UNIMOD_Xle__Asn
Xle->Asn: Leu/Ile->Asn substitution.
Definition: cv.hpp:10533
UNIMOD_Cys__Glu
UNIMOD_Cys__Glu
Cys->Glu: Cys->Glu substitution.
Definition: cv.hpp:11427
UNIMOD_Arg__Gly
UNIMOD_Arg__Gly
Arg->Gly: Arg->Gly substitution.
Definition: cv.hpp:10692
MS_IPTL_quantitation_analysis
MS_IPTL_quantitation_analysis
IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide ter...
Definition: cv.hpp:7083
UO_cubic_centimeter_per_mole
UO_cubic_centimeter_per_mole
cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one m...
Definition: cv.hpp:14073
MS_RGA_OBSOLETE
MS_RGA_OBSOLETE
RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gass...
Definition: cv.hpp:1362
UNIMOD_betaFNA
UNIMOD_betaFNA
betaFNA: Beta-Funaltrexamine.
Definition: cv.hpp:13464
UNIMOD_dHex_4_Hex_3_HexNAc_3_
UNIMOD_dHex_4_Hex_3_HexNAc_3_
dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
Definition: cv.hpp:13266
PEFF_SpecificKey
PEFF_SpecificKey
SpecificKey: Db specific information (not included in the current list of allowed keys).
Definition: cv.hpp:159
UNIMOD_Thr__His
UNIMOD_Thr__His
Thr->His: Thr->His substitution.
Definition: cv.hpp:11877
UNIMOD_Glu__pyro_Glu_Methyl
UNIMOD_Glu__pyro_Glu_Methyl
Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
Definition: cv.hpp:13425
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_
Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
Definition: cv.hpp:12924
UNIMOD_dHex_2_Hex_4_
UNIMOD_dHex_2_Hex_4_
dHex(2)Hex(4): DHex(2) Hex(4).
Definition: cv.hpp:12903
MS_SEQUEST_sort_by_TIC
MS_SEQUEST_sort_by_TIC
SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
Definition: cv.hpp:3681
UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12711
UNIMOD_Asn__Thr
UNIMOD_Asn__Thr
Asn->Thr: Asn->Thr substitution.
Definition: cv.hpp:10605
MS_spectrum_representation
MS_spectrum_representation
spectrum representation: Way in which the spectrum is represented, either with regularly spaced data ...
Definition: cv.hpp:2181
MS_hybrid_mass_spectrometer_OBSOLETE
MS_hybrid_mass_spectrometer_OBSOLETE
hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perfo...
Definition: cv.hpp:1431
UNIMOD_Trp__Thr
UNIMOD_Trp__Thr
Trp->Thr: Trp->Thr substitution.
Definition: cv.hpp:11955
MS_SILAC_reagent
MS_SILAC_reagent
SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
Definition: cv.hpp:8286
MS_full_width_at_half_maximum
MS_full_width_at_half_maximum
full width at half-maximum: A measure of resolution represented as width of the peak at half peak hei...
Definition: cv.hpp:570
MS_Bruker_TDF_nativeID_format__combined_spectra
MS_Bruker_TDF_nativeID_format__combined_spectra
Bruker TDF nativeID format, combined spectra: Bruker TDF comma separated list of spectra that have be...
Definition: cv.hpp:8880
MS_data_file_checksum_type
MS_data_file_checksum_type
data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrit...
Definition: cv.hpp:2292
UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
Definition: cv.hpp:12498
MS_instrument_model
MS_instrument_model
instrument model: Instrument model name not including the vendor's name.
Definition: cv.hpp:357
UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_
UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_
dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:12654
MS_DE
MS_DE
DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in deso...
Definition: cv.hpp:1173
MS_SEQUEST_Sequences
MS_SEQUEST_Sequences
SEQUEST:Sequences:
Definition: cv.hpp:4524
UNIMOD_Hex_7_HexNAc_3_Phos_1_
UNIMOD_Hex_7_HexNAc_3_Phos_1_
Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
Definition: cv.hpp:12648
MS_senior_author
MS_senior_author
senior author: The last of a set of authors associated with a publication or release....
Definition: cv.hpp:6549
UNIMOD_Pro__Phe
UNIMOD_Pro__Phe
Pro->Phe: Pro->Phe substitution.
Definition: cv.hpp:11760
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:11301
MS_spectrum_identifier_nativeID_format__combined_spectra
MS_spectrum_identifier_nativeID_format__combined_spectra
spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been...
Definition: cv.hpp:8427
UNIMOD_NEMsulfurWater
UNIMOD_NEMsulfurWater
NEMsulfurWater: N-ethylmaleimideSulfurWater.
Definition: cv.hpp:12174
MS_WIFF_nativeID_format__combined_spectra
MS_WIFF_nativeID_format__combined_spectra
WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined ...
Definition: cv.hpp:8406
MS_accuracy
MS_accuracy
accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
Definition: cv.hpp:303
UNIMOD_Xle__Arg
UNIMOD_Xle__Arg
Xle->Arg: Leu/Ile->Arg substitution.
Definition: cv.hpp:10584
UNIMOD_AEC_MAEC_2H_4_
UNIMOD_AEC_MAEC_2H_4_
AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
Definition: cv.hpp:10950
MS_SID
MS_SID
SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a su...
Definition: cv.hpp:774
MS_SEQUEST_sort_by_PreviousAminoAcid
MS_SEQUEST_sort_by_PreviousAminoAcid
SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino a...
Definition: cv.hpp:3642
MS_multiple_stage_mass_spectrometry_OBSOLETE
MS_multiple_stage_mass_spectrometry_OBSOLETE
multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ...
Definition: cv.hpp:1317
UNIMOD_GIST_Quat_2H_9_
UNIMOD_GIST_Quat_2H_9_
GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
Definition: cv.hpp:9528
MS_instrument_configuration
MS_instrument_configuration
instrument configuration (instrument): Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1986
MS_Mascot_homology_threshold
MS_Mascot_homology_threshold
Mascot:homology threshold: The Mascot result 'homology threshold'.
Definition: cv.hpp:4518
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_
dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:12474
MS_FileFilter
MS_FileFilter
FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
Definition: cv.hpp:2940
UO_plaque_forming_unit_per_milliliter
UO_plaque_forming_unit_per_milliliter
plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in o...
Definition: cv.hpp:14442
MS_Pro_ID
MS_Pro_ID
Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
Definition: cv.hpp:2673
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
Definition: cv.hpp:12645
MS_Mascot
MS_Mascot
Mascot: The name of the Mascot search engine.
Definition: cv.hpp:4050
UNIMOD_PEITC
UNIMOD_PEITC
PEITC: Phenethyl isothiocyanate.
Definition: cv.hpp:11241
MS_6530B_Q_TOF_LC_MS
MS_6530B_Q_TOF_LC_MS
6530B Q-TOF LC/MS: The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition: cv.hpp:8781
MS_MS_GF_
MS_MS_GF_
MS-GF+: MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6591
MS_TOPP_PeptideIndexer
MS_TOPP_PeptideIndexer
TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
Definition: cv.hpp:7029
UNIMOD_Thr__Arg
UNIMOD_Thr__Arg
Thr->Arg: Thr->Arg substitution.
Definition: cv.hpp:10749
MS_ms_level
MS_ms_level
ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
Definition: cv.hpp:2139
MS_protein_level_e_value
MS_protein_level_e_value
protein-level e-value: Estimation of the e-value for proteins.
Definition: cv.hpp:6033
UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_
UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_
dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:12582
MS_TOPP_MapAlignerSpectrum
MS_TOPP_MapAlignerSpectrum
TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
Definition: cv.hpp:6897
UNIMOD_Hep
UNIMOD_Hep
Hep: Heptose.
Definition: cv.hpp:10290
UNIMOD_ICDID_2H_6_
UNIMOD_ICDID_2H_6_
ICDID:2H(6): Isotope-Coded Dimedone heavy form.
Definition: cv.hpp:11328
UNIMOD_CLIP_TRAQ_3
UNIMOD_CLIP_TRAQ_3
CLIP_TRAQ_3: CLIP_TRAQ_3.
Definition: cv.hpp:10386
MS_number_of_peptide_seqs_compared_to_each_spectrum
MS_number_of_peptide_seqs_compared_to_each_spectrum
number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
Definition: cv.hpp:3588
MS_greylag
MS_greylag
greylag: Greylag identification software.
Definition: cv.hpp:4782
MS_SEQUEST_sort_by_Sp
MS_SEQUEST_sort_by_Sp
SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
Definition: cv.hpp:3678
UNIMOD_Glu
UNIMOD_Glu
Glu: Monoglutamyl.
Definition: cv.hpp:10248
MS_mass_to_charge_ratio
MS_mass_to_charge_ratio
mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by divid...
Definition: cv.hpp:387
MS_TOPP_OpenSwathFeatureXMLToTSV
MS_TOPP_OpenSwathFeatureXMLToTSV
TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
Definition: cv.hpp:7050
UNIMOD_Asn__Ala
UNIMOD_Asn__Ala
Asn->Ala: Asn->Ala substitution.
Definition: cv.hpp:11718
UNIMOD_Biotin_Thermo_21901_H2O
UNIMOD_Biotin_Thermo_21901_H2O
Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
Definition: cv.hpp:11376
UNIMOD_Xlink_BuUrBu_85_
UNIMOD_Xlink_BuUrBu_85_
Xlink:BuUrBu[85]: Bu fragment of BuUrBu crosslinker.
Definition: cv.hpp:13530
UNIMOD_dHex_1_Hex_1_HexNAc_3_
UNIMOD_dHex_1_Hex_1_HexNAc_3_
dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
Definition: cv.hpp:12891
MS_Bruker_Daltonics_instrument_model
MS_Bruker_Daltonics_instrument_model
Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
Definition: cv.hpp:705
MS_source_interface_model
MS_source_interface_model
source interface model: The source interface model.
Definition: cv.hpp:6216
MS_detector
MS_detector
detector: The device that detects ions.
Definition: cv.hpp:1950
UNIMOD_Xle__Gln
UNIMOD_Xle__Gln
Xle->Gln: Leu/Ile->Gln substitution.
Definition: cv.hpp:10578
MS_Bruker_Daltonics_amaZon_series
MS_Bruker_Daltonics_amaZon_series
Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
Definition: cv.hpp:5040
UNIMOD_CLIP_TRAQ_4
UNIMOD_CLIP_TRAQ_4
CLIP_TRAQ_4: CLIP_TRAQ_4.
Definition: cv.hpp:10389
MS_Bruker_BAF_nativeID_format__combined_spectra
MS_Bruker_BAF_nativeID_format__combined_spectra
Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have be...
Definition: cv.hpp:8412
MS_NG_5400
MS_NG_5400
NG-5400: Waters NG-5400 MS.
Definition: cv.hpp:906
MS_Element_XR
MS_Element_XR
Element XR: Thermo Scientific Element XR HR-ICP-MS.
Definition: cv.hpp:2607
MS_electrospray_inlet
MS_electrospray_inlet
electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization sour...
Definition: cv.hpp:450
MS_Tranche_project_hash
MS_Tranche_project_hash
Tranche project hash: Hash assigned by the Tranche resource to a whole project.
Definition: cv.hpp:6204
UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_
UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_
dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
Definition: cv.hpp:13149
MS_OMSSA_csv_format
MS_OMSSA_csv_format
OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
Definition: cv.hpp:4605
UNIMOD_Val__Cys
UNIMOD_Val__Cys
Val->Cys: Val->Cys substitution.
Definition: cv.hpp:11892
UNIMOD_Ser__Trp
UNIMOD_Ser__Trp
Ser->Trp: Ser->Trp substitution.
Definition: cv.hpp:10701
MS_TMT_reagent_126
MS_TMT_reagent_126
TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
Definition: cv.hpp:8301
MS_Gaussian_smoothing
MS_Gaussian_smoothing
Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian f...
Definition: cv.hpp:3024
MS_MSPathFinder_EValue
MS_MSPathFinder_EValue
MSPathFinder:EValue: MSPathFinder E-value.
Definition: cv.hpp:8586
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge...
Definition: cv.hpp:5511
MS_ProteomeDiscoverer_perform_deisotoping
MS_ProteomeDiscoverer_perform_deisotoping
ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
Definition: cv.hpp:7434
MS_Comet_expectation_value
MS_Comet_expectation_value
Comet:expectation value: The Comet result 'Expectation value'.
Definition: cv.hpp:7218
MS_number_of_spectra_searched
MS_number_of_spectra_searched
number of spectra searched: Number of spectra in a search.
Definition: cv.hpp:7752
UNIMOD_RNPXL
UNIMOD_RNPXL
RNPXL: Simulate peptide-RNA conjugates.
Definition: cv.hpp:13422
UO_hecto
UO_hecto
hecto: A prefix in the metric system denoting a factor of one hundred.
Definition: cv.hpp:14658
UNIMOD_Oxidation
UNIMOD_Oxidation
Oxidation: Oxidation or Hydroxylation.
Definition: cv.hpp:9450
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlappi...
Definition: cv.hpp:5328
UNIMOD_dHex_2_HexNAc_5_
UNIMOD_dHex_2_HexNAc_5_
dHex(2)HexNAc(5): DHex(2) HexNAc(5).
Definition: cv.hpp:13098
UNIMOD_GluGlu
UNIMOD_GluGlu
GluGlu: Diglutamyl.
Definition: cv.hpp:10251
MS_CRM_spectrum
MS_CRM_spectrum
CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and ...
Definition: cv.hpp:2376
MS_sequential_m_z_separation_method_OBSOLETE
MS_sequential_m_z_separation_method_OBSOLETE
sequential m/z separation method: Sequential m/z separation method.
Definition: cv.hpp:1917
UNIMOD_Asn__Met
UNIMOD_Asn__Met
Asn->Met: Asn->Met substitution.
Definition: cv.hpp:11733
UNIMOD_TMT
UNIMOD_TMT
TMT: Native Tandem Mass Tag®.
Definition: cv.hpp:10878
UNIMOD_Glu__Asp
UNIMOD_Glu__Asp
Glu->Asp: Glu->Asp substitution.
Definition: cv.hpp:10464
MS_sample_plate_type
MS_sample_plate_type
sample plate type: The sample plate type.
Definition: cv.hpp:6234
MS_lab_personnel
MS_lab_personnel
lab personnel: Lab personnel role.
Definition: cv.hpp:4230
MS_absorption_chromatogram
MS_absorption_chromatogram
absorption chromatogram: The measurement of light absorbed by the sample as a function of the retenti...
Definition: cv.hpp:3135
MS_isotope_dilution_mass_spectrometry_OBSOLETE
MS_isotope_dilution_mass_spectrometry_OBSOLETE
isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopical...
Definition: cv.hpp:1050
MS_iTRAQ_quantitation_analysis
MS_iTRAQ_quantitation_analysis
iTRAQ quantitation analysis: Quantification analysis using the SCIEX amine-reactive isobaric tags for...
Definition: cv.hpp:5925
MS_TSQ_Quantum
MS_TSQ_Quantum
TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
Definition: cv.hpp:963
MS_binary_data_array
MS_binary_data_array
binary data array: A data array of values.
Definition: cv.hpp:2145
UNIMOD_dHex_1_Hex_5_HexNAc_2_
UNIMOD_dHex_1_Hex_5_HexNAc_2_
dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
Definition: cv.hpp:12471
UNIMOD_Maleimide_PEO2_Biotin
UNIMOD_Maleimide_PEO2_Biotin
Maleimide-PEO2-Biotin: Maleimide-Biotin.
Definition: cv.hpp:10350
MS_glutamyl_endopeptidase
MS_glutamyl_endopeptidase
glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6165
UNIMOD_Pro__Lys
UNIMOD_Pro__Lys
Pro->Lys: Pro->Lys substitution.
Definition: cv.hpp:11766
MS_SRM_transition_attribute
MS_SRM_transition_attribute
SRM transition attribute: Attribute associated with a SRM transition.
Definition: cv.hpp:7113
UO_density_unit
UO_density_unit
density unit: A unit which is a standard measure of the influence exerted by some mass.
Definition: cv.hpp:14343
MS_PSM_level_probability
MS_PSM_level_probability
PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all...
Definition: cv.hpp:7521
UNIMOD_Lys__MetOx
UNIMOD_Lys__MetOx
Lys->MetOx: Lys->Met substitution and sulfoxidation.
Definition: cv.hpp:11100
UNIMOD_DiART6plex118
UNIMOD_DiART6plex118
DiART6plex118: Accurate mass for DiART6plex 118.
Definition: cv.hpp:12300
UNIMOD_Gln__Trp
UNIMOD_Gln__Trp
Gln->Trp: Gln->Trp substitution.
Definition: cv.hpp:11814
MS_PureDisk
MS_PureDisk
PureDisk: BrukerPureDisk software.
Definition: cv.hpp:2874
MS_sequence_same_set_protein
MS_sequence_same_set_protein
sequence same-set protein: A protein which is indistinguishable or equivalent to another protein,...
Definition: cv.hpp:5196
UO_conduction_unit
UO_conduction_unit
conduction unit: A unit which represents a standard measurement of the transmission of an entity thro...
Definition: cv.hpp:14580
UNIMOD_Delta_H_4_C_2_
UNIMOD_Delta_H_4_C_2_
Delta:H(4)C(2): Acetaldehyde +28.
Definition: cv.hpp:9804
UNIMOD_HexNAc
UNIMOD_HexNAc
HexNAc: N-Acetylhexosamine.
Definition: cv.hpp:9471
UNIMOD_dHex_1_Hex_5_HexNAc_5_
UNIMOD_dHex_1_Hex_5_HexNAc_5_
dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
Definition: cv.hpp:12750
UNIMOD_Fluoro
UNIMOD_Fluoro
Fluoro: Fluorination.
Definition: cv.hpp:9615
UNIMOD_Lysbiotinhydrazide
UNIMOD_Lysbiotinhydrazide
Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
Definition: cv.hpp:10008
MS_protein
MS_protein
protein: A compound composed of one or more chains of amino acids in a specific order determined by t...
Definition: cv.hpp:3348
UO_month
UO_month
month: A time unit which is approximately equal to the length of time of one of cycle of the moon's p...
Definition: cv.hpp:13908
MS_LC_MS_label_free_quantitation_analysis
MS_LC_MS_label_free_quantitation_analysis
LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
Definition: cv.hpp:5916
MS_one_sample_run
MS_one_sample_run
one sample run: The raw file contains the run of one sample (e.g. spectral counting,...
Definition: cv.hpp:5868
MS_QTRAP_5500
MS_QTRAP_5500
QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
Definition: cv.hpp:3501
MS_profile_spectrum
MS_profile_spectrum
profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts p...
Definition: cv.hpp:726
MS_TMT_reagent_129C
MS_TMT_reagent_129C
TMT reagent 129C: The name of the sample labelled with the TMT reagent 129C.
Definition: cv.hpp:8724
MS_protein_group_level_p_value
MS_protein_group_level_p_value
protein group-level p-value: Estimation of the p-value for protein groups.
Definition: cv.hpp:7563
MS_reflectron_on
MS_reflectron_on
reflectron on: Reflectron is on.
Definition: cv.hpp:636
UNIMOD_PhosphoribosyldephosphoCoA
UNIMOD_PhosphoribosyldephosphoCoA
PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
Definition: cv.hpp:10107
UNIMOD_Cation_Mg_II_
UNIMOD_Cation_Mg_II_
Cation:Mg[II]: Replacement of 2 protons by magnesium.
Definition: cv.hpp:11205
MS_TOF_MS_OBSOLETE
MS_TOF_MS_OBSOLETE
TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free r...
Definition: cv.hpp:1422
MS_MRM_transition_type
MS_MRM_transition_type
MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
Definition: cv.hpp:6453
MS_m_z
MS_m_z
m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion ...
Definition: cv.hpp:384
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
Definition: cv.hpp:5334
UO_rate_unit
UO_rate_unit
rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
Definition: cv.hpp:14637
MS_jPOST_dataset_URI
MS_jPOST_dataset_URI
jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository....
Definition: cv.hpp:8355
MS_quality_estimation_with_decoy_database
MS_quality_estimation_with_decoy_database
quality estimation with decoy database: Quality estimation by decoy database.
Definition: cv.hpp:4017
MS_predicted_pI
MS_predicted_pI
predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would no...
Definition: cv.hpp:3291
MS_run_attribute
MS_run_attribute
run attribute: Properties of the described run.
Definition: cv.hpp:3267
UNIMOD_Xlink_DTSSP_174_
UNIMOD_Xlink_DTSSP_174_
Xlink:DTSSP[174]: Intact DSP/DTSSP crosslinker.
Definition: cv.hpp:13560
MS_Phenyx_Pepzscore
MS_Phenyx_Pepzscore
Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4593
MS_XCMS_intf
MS_XCMS_intf
XCMS:intf: Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak int...
Definition: cv.hpp:8913
UNIMOD_dHex_4_HexNAc_3_Kdn_1_
UNIMOD_dHex_4_HexNAc_3_Kdn_1_
dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
Definition: cv.hpp:13167
MS_MS2_tag_based_feature_level_quantitation
MS_MS2_tag_based_feature_level_quantitation
MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
Definition: cv.hpp:6516
MS_search_type
MS_search_type
search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
Definition: cv.hpp:3699
MS_mzQuantML_format
MS_mzQuantML_format
mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '....
Definition: cv.hpp:6675
MS_ms_ms_search
MS_ms_ms_search
ms-ms search: An MS2 search (with fragment ions).
Definition: cv.hpp:3708
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
Definition: cv.hpp:5661
UNIMOD_ICAT_H
UNIMOD_ICAT_H
ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
Definition: cv.hpp:9606
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE
Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that inco...
Definition: cv.hpp:1569
MS_6490_Triple_Quadrupole_LC_MS
MS_6490_Triple_Quadrupole_LC_MS
6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7788
MS_Synapt_G2_S_HDMS
MS_Synapt_G2_S_HDMS
Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
Definition: cv.hpp:5751
UNIMOD_Ala__Trp
UNIMOD_Ala__Trp
Ala->Trp: Ala->Trp substitution.
Definition: cv.hpp:11415
MS_TSQ_Quantis
MS_TSQ_Quantis
TSQ Quantis: Thermo Scientific TSQ Quantis Triple Quadrupole MS.
Definition: cv.hpp:9048
MS_6430_Triple_Quadrupole_LC_MS
MS_6430_Triple_Quadrupole_LC_MS
6430 Triple Quadrupole LC/MS: The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:8817
MS_supplemental_beam_type_collision_induced_dissociation
MS_supplemental_beam_type_collision_induced_dissociation
supplemental beam-type collision-induced dissociation: A supplemental collision-induced dissociation ...
Definition: cv.hpp:8493
UNIMOD_CuSMo
UNIMOD_CuSMo
CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
Definition: cv.hpp:10233
MS_quantitation_software_comment_or_customizations
MS_quantitation_software_comment_or_customizations
quantitation software comment or customizations: Quantitation software comment or any customizations ...
Definition: cv.hpp:5910
MS_DB_filter_on_sequence_pattern
MS_DB_filter_on_sequence_pattern
DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
Definition: cv.hpp:3579
UNIMOD_FTC
UNIMOD_FTC
FTC: Fluorescein-5-thiosemicarbazide.
Definition: cv.hpp:10281
UO_temperature_unit
UO_temperature_unit
temperature unit: A unit which is a standard measure of the average kinetic energy of the particles i...
Definition: cv.hpp:13818
MS_MD_Score_threshold
MS_MD_Score_threshold
MD-Score threshold: Threshold for MD-score PTM site location score.
Definition: cv.hpp:8127
UO_count_per_nanomolar
UO_count_per_nanomolar
count per nanomolar: A rate unit which is equal to one over one nanomolar.
Definition: cv.hpp:14649
MS_TOPP_MassTraceExtractor
MS_TOPP_MassTraceExtractor
TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
Definition: cv.hpp:6924
MS_AXIMA_Confidence_MALDI_TOF
MS_AXIMA_Confidence_MALDI_TOF
AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
Definition: cv.hpp:2493
MS_DB_accession_filter_string
MS_DB_accession_filter_string
DB accession filter string: DB accession filter string.
Definition: cv.hpp:4947
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr paramete...
Definition: cv.hpp:5532
MS_no_threshold
MS_no_threshold
no threshold: In case no threshold was used.
Definition: cv.hpp:4887
MS_TOPP_map_aligner
MS_TOPP_map_aligner
TOPP map aligner: Map aligner component of the TOPP software.
Definition: cv.hpp:6888
MS_co_eluting_ion
MS_co_eluting_ion
co-eluting ion: Co-eluting ion.
Definition: cv.hpp:4155
UNIMOD_DeStreak
UNIMOD_DeStreak
DeStreak: Cysteine mercaptoethanol.
Definition: cv.hpp:9906
UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_
UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_
dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
Definition: cv.hpp:12501
UNIMOD_IED_Biotin
UNIMOD_IED_Biotin
IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
Definition: cv.hpp:9888
MS_lipidomics_analysis_software
MS_lipidomics_analysis_software
lipidomics analysis software: Lipidomics analysis software.
Definition: cv.hpp:9315
MS_sample
MS_sample
sample: Terms to describe the sample.
Definition: cv.hpp:1965
MS_database_type_spectral_library
MS_database_type_spectral_library
database type spectral library: Database containing spectra.
Definition: cv.hpp:8676
MS_Peak_list_file_URI
MS_Peak_list_file_URI
Peak list file URI: URI of one of one search engine output file associated to one PX submission.
Definition: cv.hpp:8973
UNIMOD_Hex_4_
UNIMOD_Hex_4_
Hex(4): Hex(4).
Definition: cv.hpp:12429
UO_milligram
UO_milligram
milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
Definition: cv.hpp:13869
MS_Paragon__ID_focus
MS_Paragon__ID_focus
Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such ...
Definition: cv.hpp:7728
MS_MALDI_Synapt_G2_S_HDMS
MS_MALDI_Synapt_G2_S_HDMS
MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5733
UNIMOD_Hydroxamic_acid
UNIMOD_Hydroxamic_acid
Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
Definition: cv.hpp:12270
MS_text_format
MS_text_format
text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS2) search.
Definition: cv.hpp:4515
UNIMOD_IodoU_AMP
UNIMOD_IodoU_AMP
IodoU-AMP: (Iodo)-uracil MP.
Definition: cv.hpp:9882
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_
dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc —OR— Hex(3) HexNAc(3) dHex NeuAc —OR— ...
Definition: cv.hpp:13215
MS_centroid_spectrum
MS_centroid_spectrum
centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero...
Definition: cv.hpp:720
UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_
UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_
dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:12579
UNIMOD_Pro__pyro_Glu
UNIMOD_Pro__pyro_Glu
Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
Definition: cv.hpp:10017
UNIMOD_Biotin_Thermo_21328
UNIMOD_Biotin_Thermo_21328
Biotin:Thermo-21328: EZ-Link Sulfo-NHS-SS-Biotin.
Definition: cv.hpp:13470
MS_contact_role
MS_contact_role
contact role: Role of the contact person.
Definition: cv.hpp:6543
UNIMOD_dHex_1_HexNAc_5_
UNIMOD_dHex_1_HexNAc_5_
dHex(1)HexNAc(5): DHex HexNAc(5).
Definition: cv.hpp:13017
UNIMOD_IBTP
UNIMOD_IBTP
IBTP: Thio Ether Formation - BTP Adduct.
Definition: cv.hpp:9597
MS_cluster_ion_OBSOLETE
MS_cluster_ion_OBSOLETE
cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with...
Definition: cv.hpp:1647
MS_MPI
MS_MPI
MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons ...
Definition: cv.hpp:1080
MS_ProteinExtractor_PhenyxUniqueScore
MS_ProteinExtractor_PhenyxUniqueScore
ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4734
MS_vertical_ionization
MS_vertical_ionization
vertical ionization: A process in which an electron is removed from or added to a molecule without a ...
Definition: cv.hpp:1797
MS_BioTOF_Q
MS_BioTOF_Q
BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
Definition: cv.hpp:822
MS_spectrum_attribute
MS_spectrum_attribute
spectrum attribute: Spectrum properties that are associated with a value.
Definition: cv.hpp:2103
MS_DELTAplusXP
MS_DELTAplusXP
DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
Definition: cv.hpp:828
UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_
dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
Definition: cv.hpp:12744
MS_assay_attribute
MS_assay_attribute
assay attribute: Attribute describing an assay.
Definition: cv.hpp:6777
MS_PROTEINEER_fc
MS_PROTEINEER_fc
PROTEINEER fc: Bruker PROTEINEER fc software.
Definition: cv.hpp:2862
MS_MaxQuant_PTM_Delta_Score
MS_MaxQuant_PTM_Delta_Score
MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highes...
Definition: cv.hpp:6378
MS_proteoform_level_local_FDR
MS_proteoform_level_local_FDR
proteoform-level local FDR: Estimation of the local false discovery rate of proteoforms.
Definition: cv.hpp:9147
MS_sequence_coverage
MS_sequence_coverage
sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can...
Definition: cv.hpp:3738
UO_kilogram_per_square_meter
UO_kilogram_per_square_meter
kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms ...
Definition: cv.hpp:14061
MS_peptide_sequence_level_probability
MS_peptide_sequence_level_probability
peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespec...
Definition: cv.hpp:7536
MS_data_processing_action
MS_data_processing_action
data processing action: Data processing attribute used to describe the type of data processing perfor...
Definition: cv.hpp:2238
UO_byte
UO_byte
byte: An information unit which is equal to 8 bits.
Definition: cv.hpp:14496
UNIMOD_Crotonaldehyde
UNIMOD_Crotonaldehyde
Crotonaldehyde: Crotonaldehyde.
Definition: cv.hpp:9798
MS_standard_error
MS_standard_error
standard error: Standard error function.
Definition: cv.hpp:9078
MS_external_reference_identifier
MS_external_reference_identifier
external reference identifier: An identifier/accession number to an external reference database.
Definition: cv.hpp:3336
UNIMOD_Hex_4_HexNAc_3_
UNIMOD_Hex_4_HexNAc_3_
Hex(4)HexNAc(3): Hex(4) HexNAc(3).
Definition: cv.hpp:13350
MS_IKES_OBSOLETE
MS_IKES_OBSOLETE
IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated acc...
Definition: cv.hpp:1257
UO_angstrom
UO_angstrom
angstrom: A length unit which is equal to 10 [-10] m.
Definition: cv.hpp:13860
MS_Paragon__modified_data_dictionary_or_parameter_translation
MS_Paragon__modified_data_dictionary_or_parameter_translation
Paragon: modified data dictionary or parameter translation: This metric detects if any changes have b...
Definition: cv.hpp:7749
UNIMOD_Pentose
UNIMOD_Pentose
Pentose: Pentose.
Definition: cv.hpp:12360
UNIMOD_Phe__Thr
UNIMOD_Phe__Thr
Phe->Thr: Phe->Thr substitution.
Definition: cv.hpp:11559
MS_spectrum_quality_descriptions
MS_spectrum_quality_descriptions
spectrum quality descriptions: Description of the quality of the input spectrum.
Definition: cv.hpp:4479
MS_ultraflex_TOF_TOF
MS_ultraflex_TOF_TOF
ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
Definition: cv.hpp:972
MS_SEQUEST_sort_by_dCn
MS_SEQUEST_sort_by_dCn
SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation ...
Definition: cv.hpp:3624
MS_dynode
MS_dynode
dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to ampli...
Definition: cv.hpp:1614
UNIMOD_dHex_2_HexNAc_2_Kdn_1_
UNIMOD_dHex_2_HexNAc_2_Kdn_1_
dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
Definition: cv.hpp:12906
UNIMOD_Biotin_Invitrogen_M1602
UNIMOD_Biotin_Invitrogen_M1602
Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
Definition: cv.hpp:11313
MS_absolute_quantitation_analysis
MS_absolute_quantitation_analysis
absolute quantitation analysis: Absolute quantitation analysis.
Definition: cv.hpp:7992
MS_Linked_Scan_at_Constant_B2_E_OBSOLETE
MS_Linked_Scan_at_Constant_B2_E_OBSOLETE
Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates...
Definition: cv.hpp:1566
UNIMOD_Hex_4_Phos_1_
UNIMOD_Hex_4_Phos_1_
Hex(4)Phos(1): Hex(4) Phos.
Definition: cv.hpp:12804
MS_WARP_LC
MS_WARP_LC
WARP-LC: Bruker WARP-LC software.
Definition: cv.hpp:2886
MS_SILAC_medium_reagent
MS_SILAC_medium_reagent
SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
Definition: cv.hpp:8292
MS_mzidLib_Thresholder
MS_mzidLib_Thresholder
mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting ...
Definition: cv.hpp:7173
MS_object_attribute
MS_object_attribute
object attribute: Object Attribute.
Definition: cv.hpp:2250
MS_einzel_lens
MS_einzel_lens
einzel lens: Three element charged particle lens in which the first and third elements are held at th...
Definition: cv.hpp:1482
MS_average_mass_OBSOLETE
MS_average_mass_OBSOLETE
average mass: The mass of an ion or molecule calculated using the average mass of each element weight...
Definition: cv.hpp:999
MS_Savitzky_Golay_smoothing
MS_Savitzky_Golay_smoothing
Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree...
Definition: cv.hpp:3018
UNIMOD_Acetyl_2H_3_
UNIMOD_Acetyl_2H_3_
Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
Definition: cv.hpp:9510
MS_higher_score_better
MS_higher_score_better
higher score better: Indicates that a higher score is better.
Definition: cv.hpp:6771
MS_FD
MS_FD
FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface i...
Definition: cv.hpp:1239
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_
dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
Definition: cv.hpp:12714
UNIMOD_Lys__Xle
UNIMOD_Lys__Xle
Lys->Xle: Lys->Leu/Ile substitution.
Definition: cv.hpp:10557
MS_reflectron
MS_reflectron
reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direc...
Definition: cv.hpp:1461
MS_SRM_transition_type
MS_SRM_transition_type
SRM transition type: The type of the transitions, e.g. target or decoy.
Definition: cv.hpp:6450
UNIMOD_Gly__Val
UNIMOD_Gly__Val
Gly->Val: Gly->Val substitution.
Definition: cv.hpp:10503
MS_TopPIC_generating_function
MS_TopPIC_generating_function
TopPIC:generating function: P-value and E-value estimation using generating function.
Definition: cv.hpp:9192
MS_chromatography_separation
MS_chromatography_separation
chromatography separation: A technique by which molecules are separated by chemical and physical prop...
Definition: cv.hpp:7257
MS_FlexControl
MS_FlexControl
FlexControl: Bruker software for data acquisition.
Definition: cv.hpp:2229
MS_LipidXplorer
MS_LipidXplorer
LipidXplorer: Software for consensual cross-platform lipidomics.
Definition: cv.hpp:9327
MS_orthogonal_extraction_OBSOLETE
MS_orthogonal_extraction_OBSOLETE
orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel int...
Definition: cv.hpp:1512
MS_null_terminated_ASCII_string
MS_null_terminated_ASCII_string
null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a sing...
Definition: cv.hpp:4842
MS_contact_URL
MS_contact_URL
contact URL: Uniform Resource Locator related to the contact person or organization.
Definition: cv.hpp:2415
UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_
UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_
dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
Definition: cv.hpp:12699
UNIMOD_Hex_9_Phos_3_
UNIMOD_Hex_9_Phos_3_
Hex(9)Phos(3): Hex(9) Phos(3).
Definition: cv.hpp:13269
MS_Data_Explorer
MS_Data_Explorer
Data Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2214
MS_SymBiot_XVI
MS_SymBiot_XVI
SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
Definition: cv.hpp:951
MS_ChromaTOF_HRT_software
MS_ChromaTOF_HRT_software
ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instrument...
Definition: cv.hpp:6045
MS_MSPepSearch_score
MS_MSPepSearch_score
MSPepSearch:score: MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spect...
Definition: cv.hpp:8682
MS_EA_OBSOLETE
MS_EA_OBSOLETE
EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:1023
MS_frag__d_ion
MS_frag__d_ion
frag: d ion: Fragmentation information, type of product: d ion.
Definition: cv.hpp:4140
MS_NoEnzyme_OBSOLETE
MS_NoEnzyme_OBSOLETE
NoEnzyme:
Definition: cv.hpp:3732
UNIMOD_iTRAQ4plex114
UNIMOD_iTRAQ4plex114
iTRAQ4plex114: Accurate mass for 114.
Definition: cv.hpp:10374
UNIMOD_dHex_2_Hex_3_HexNAc_6_
UNIMOD_dHex_2_Hex_3_HexNAc_6_
dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
Definition: cv.hpp:12771
MS_TOPP_HighResPrecursorMassCorrector
MS_TOPP_HighResPrecursorMassCorrector
TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution da...
Definition: cv.hpp:6930
UO_gram_per_deciliter
UO_gram_per_deciliter
gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the v...
Definition: cv.hpp:14421
MS_gas_chromatography_separation
MS_gas_chromatography_separation
gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile ...
Definition: cv.hpp:7263
MS_TOPP_PrecursorIonSelector
MS_TOPP_PrecursorIonSelector
TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
Definition: cv.hpp:7032
MS_peak_list_raw_scans
MS_peak_list_raw_scans
peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list....
Definition: cv.hpp:3081
MS_LTQ_Orbitrap_Discovery
MS_LTQ_Orbitrap_Discovery
LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
Definition: cv.hpp:2274
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must ex...
Definition: cv.hpp:5505
UO_acre
UO_acre
acre: An area unit which is equivalent to 1 furlong x 1 chain. This is equal to an area of 4,...
Definition: cv.hpp:14868
UNIMOD_Palmitoyl
UNIMOD_Palmitoyl
Palmitoyl: Palmitoylation.
Definition: cv.hpp:9483
MS_isotopomer_MS_peak
MS_isotopomer_MS_peak
isotopomer MS peak: The described isotopomer mass spectrometric signal. The value slot contains a des...
Definition: cv.hpp:9294
MS_ProteomeDiscoverer_Number_of_input5_spectra
MS_ProteomeDiscoverer_Number_of_input5_spectra
ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
Definition: cv.hpp:5610
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contri...
Definition: cv.hpp:5589
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for ...
Definition: cv.hpp:5250
MS_DiLeu_reagent_118
MS_DiLeu_reagent_118
DiLeu reagent 118: The name of the sample labelled with the DiLeu reagent 118.
Definition: cv.hpp:8766
MS_isotopomer
MS_isotopomer
isotopomer: An isomer that differs from another only in the spatial distribution of the constitutive ...
Definition: cv.hpp:9303
MS_peptide_sequence_level_result_list_attribute
MS_peptide_sequence_level_result_list_attribute
peptide sequence-level result list attribute: General property of all peptide sequences in the list.
Definition: cv.hpp:8562
MS_molecular_mass_OBSOLETE
MS_molecular_mass_OBSOLETE
molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
Definition: cv.hpp:1065
MS_Resampler
MS_Resampler
Resampler: Transforms an LC/MS map into a resampled map or a png image.
Definition: cv.hpp:2961
UO_nanoliter
UO_nanoliter
nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
Definition: cv.hpp:14109
UNIMOD_Delta_H_8_C_6_O_2_
UNIMOD_Delta_H_8_C_6_O_2_
Delta:H(8)C(6)O(2): Acrolein addition +112.
Definition: cv.hpp:9780
MS_number_of_unmatched_peaks
MS_number_of_unmatched_peaks
number of unmatched peaks: The number of unmatched peaks.
Definition: cv.hpp:4494
PEFF_GO
PEFF_GO
GO: Gene Ontology code.
Definition: cv.hpp:228
UNIMOD_Didehydroretinylidene
UNIMOD_Didehydroretinylidene
Didehydroretinylidene: 3,4-didehydroretinylidene.
Definition: cv.hpp:10203
UNIMOD_Hex_3_HexNAc_2_Phos_1_
UNIMOD_Hex_3_HexNAc_2_Phos_1_
Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
Definition: cv.hpp:9708
MS______HKR_P____P_
MS______HKR_P____P_
(?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
Definition: cv.hpp:6297
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for ...
Definition: cv.hpp:5466
MS_TOPP_PeakPickerHiRes
MS_TOPP_PeakPickerHiRes
TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
Definition: cv.hpp:6852
MS_ion_trap
MS_ion_trap
ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combin...
Definition: cv.hpp:1278
MS_Formic_acid
MS_Formic_acid
Formic_acid: Formic acid.
Definition: cv.hpp:4332
UNIMOD_3sulfo
UNIMOD_3sulfo
3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
Definition: cv.hpp:10902
UNIMOD_Gln__Gly
UNIMOD_Gln__Gly
Gln->Gly: Gln->Gly substitution.
Definition: cv.hpp:11796
UNIMOD_Xlink_DMP_154_
UNIMOD_Xlink_DMP_154_
Xlink:DMP[154]: Free monolink of DMP crosslinker.
Definition: cv.hpp:10263
UNIMOD_LRGG_dimethyl
UNIMOD_LRGG_dimethyl
LRGG+dimethyl: LeudimethylArgGlyGly.
Definition: cv.hpp:13434
MS_ProteomeDiscoverer_use_flanking_ions
MS_ProteomeDiscoverer_use_flanking_ions
ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
Definition: cv.hpp:7428
UNIMOD_Cation_Li
UNIMOD_Cation_Li
Cation:Li: Replacement of proton by lithium.
Definition: cv.hpp:11187
UNIMOD_Biotin_Cayman_10013
UNIMOD_Biotin_Cayman_10013
Biotin:Cayman-10013: Was PGA1-biotin.
Definition: cv.hpp:10395
UO_gray
UO_gray
gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one ...
Definition: cv.hpp:14202
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
Definition: cv.hpp:13050
MS_Lys_C_P
MS_Lys_C_P
Lys-C/P: Proteinase Lys-C/P.
Definition: cv.hpp:4341
MS_unit_OBSOLETE
MS_unit_OBSOLETE
unit: Terms to describe units.
Definition: cv.hpp:1974
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for ...
Definition: cv.hpp:5469
MS_TopMG_mod_file
MS_TopMG_mod_file
TopMG:mod file: The text file containing the information of common PTMs.
Definition: cv.hpp:9252
MS_positive_ion_OBSOLETE
MS_positive_ion_OBSOLETE
positive ion: An atomic or molecular species having a net positive electric charge.
Definition: cv.hpp:1695
MS_SEQUEST_deltacnstar
MS_SEQUEST_deltacnstar
SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
Definition: cv.hpp:7197
UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_
UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_
dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
Definition: cv.hpp:13182
UNIMOD_Arg__Cys
UNIMOD_Arg__Cys
Arg->Cys: Arg->Cys substitution.
Definition: cv.hpp:10686
MS_normalized_retention_time
MS_normalized_retention_time
normalized retention time: A time interval from the start of chromatography when an analyte exits a s...
Definition: cv.hpp:3393
MS_instrument_attribute
MS_instrument_attribute
instrument attribute: Instrument properties that are associated with a value.
Definition: cv.hpp:2091
MS_quantitation_software_name
MS_quantitation_software_name
quantitation software name: Quantitation software name.
Definition: cv.hpp:3876
UNIMOD_Hex_5_HexNAc_4_
UNIMOD_Hex_5_HexNAc_4_
Hex(5)HexNAc(4): Biantennary.
Definition: cv.hpp:9924
MS_DB_source_EBI
MS_DB_source_EBI
DB source EBI: Database source EBI.
Definition: cv.hpp:4182
MS_Lipid_Data_Analyzer
MS_Lipid_Data_Analyzer
Lipid Data Analyzer: Lipid Data Analyzer software for lipid quantification.
Definition: cv.hpp:9318
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
Definition: cv.hpp:12735
UNIMOD_Hex_2_HexNAc_1_NeuGc_1_
UNIMOD_Hex_2_HexNAc_1_NeuGc_1_
Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
Definition: cv.hpp:12861
UNIMOD_DNPS
UNIMOD_DNPS
DNPS: 2,4-Dinitrobenzenesulfenyl.
Definition: cv.hpp:11163
MS_Progeny_Fragment_Ion_OBSOLETE
MS_Progeny_Fragment_Ion_OBSOLETE
Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that inclu...
Definition: cv.hpp:1605
MS_Xevo_TQ_S_micro
MS_Xevo_TQ_S_micro
Xevo TQ-S micro: Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer.
Definition: cv.hpp:8613
MS_param__x_ion
MS_param__x_ion
param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
Definition: cv.hpp:4209
MS_spectral_counting_quantitation_analysis
MS_spectral_counting_quantitation_analysis
spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra...
Definition: cv.hpp:5922
MS______KR_____P_
MS______KR_____P_
(?<=[KR])(?!P): Regular expression for Trypsin.
Definition: cv.hpp:3987
UNIMOD_Hydroxyheme
UNIMOD_Hydroxyheme
Hydroxyheme: Hydroxyheme.
Definition: cv.hpp:10212
UNIMOD_cGMP
UNIMOD_cGMP
cGMP: S-guanylation.
Definition: cv.hpp:11004
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
Definition: cv.hpp:5355
MS_PAnalyzer_indistinguishable_protein
MS_PAnalyzer_indistinguishable_protein
PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are ex...
Definition: cv.hpp:7089
UNIMOD_AzidoF
UNIMOD_AzidoF
AzidoF: Azidophenylalanine.
Definition: cv.hpp:13476
UNIMOD_Isopropylphospho
UNIMOD_Isopropylphospho
Isopropylphospho: O-Isopropylphosphorylation.
Definition: cv.hpp:10029
UO_katal_per_cubic_meter
UO_katal_per_cubic_meter
katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity o...
Definition: cv.hpp:14406
MS_sophisticated_numerical_annotation_procedure
MS_sophisticated_numerical_annotation_procedure
sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum...
Definition: cv.hpp:6423
MS_MaxQuant_P_site_localization_probability_threshold
MS_MaxQuant_P_site_localization_probability_threshold
MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probab...
Definition: cv.hpp:8145
UNIMOD_ICAT_G_2H_8_
UNIMOD_ICAT_G_2H_8_
ICAT-G:2H(8): Gygi ICAT(TM) d8.
Definition: cv.hpp:9396
MS_final_PSM_list
MS_final_PSM_list
final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the fi...
Definition: cv.hpp:7767
UNIMOD_iTRAQ4plex
UNIMOD_iTRAQ4plex
iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
Definition: cv.hpp:9792
UNIMOD_Val__Gly
UNIMOD_Val__Gly
Val->Gly: Val->Gly substitution.
Definition: cv.hpp:10770
UNIMOD_Hex_3_
UNIMOD_Hex_3_
Hex(3): Hex3.
Definition: cv.hpp:9657
MS_molecule
MS_molecule
molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of ...
Definition: cv.hpp:3273
pwiz::cv::CVTermInfo::shortName
const std::string & shortName() const
UNIMOD_Pro__Val
UNIMOD_Pro__Val
Pro->Val: Pro->Val substitution.
Definition: cv.hpp:11775
UO_curie
UO_curie
curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioacti...
Definition: cv.hpp:14199
UO_parts_per_billion
UO_parts_per_billion
parts per billion: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:14307
MS_DIP
MS_DIP
DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrome...
Definition: cv.hpp:1185
MS_scanning_method_OBSOLETE
MS_scanning_method_OBSOLETE
scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experimen...
Definition: cv.hpp:321
UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
Definition: cv.hpp:12813
MS_BioTOF_III
MS_BioTOF_III
BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
Definition: cv.hpp:5019
MS_chromosome_name
MS_chromosome_name
chromosome name: The name or number of the chromosome to which a given peptide has been mapped.
Definition: cv.hpp:8367
UNIMOD_Trp__Xle
UNIMOD_Trp__Xle
Trp->Xle: Trp->Leu/Ile substitution.
Definition: cv.hpp:10785
MS_FWHM
MS_FWHM
FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half p...
Definition: cv.hpp:573
UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_
UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_
dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
Definition: cv.hpp:12615
MS_number_of_distinct_protein_sequences
MS_number_of_distinct_protein_sequences
number of distinct protein sequences: The number of protein clusters that have been identified,...
Definition: cv.hpp:7674
MS_iTRAQ_reagent_115
MS_iTRAQ_reagent_115
iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
Definition: cv.hpp:8328
MS_Paragon_expression_change_p_value
MS_Paragon_expression_change_p_value
Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
Definition: cv.hpp:3966
UNIMOD_Hex_3_HexNAc_7_Sulf_1_
UNIMOD_Hex_3_HexNAc_7_Sulf_1_
Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
Definition: cv.hpp:12759
MS_ProteinExtractor_input_parameter
MS_ProteinExtractor_input_parameter
ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
Definition: cv.hpp:6744
MS_SQID_score
MS_SQID_score
SQID:score: The SQID result 'Score'.
Definition: cv.hpp:6075
UNIMOD_Thyroxine
UNIMOD_Thyroxine
Thyroxine: Tetraiodo.
Definition: cv.hpp:10116
MS_6224_Time_of_Flight_LC_MS
MS_6224_Time_of_Flight_LC_MS
6224 Time-of-Flight LC/MS: The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:8808
MS_6530A_Q_TOF_LC_MS
MS_6530A_Q_TOF_LC_MS
6530A Q-TOF LC/MS: The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instr...
Definition: cv.hpp:8778
MS_metabolic_labelling__natural_N__mainly_14N_
MS_metabolic_labelling__natural_N__mainly_14N_
metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
Definition: cv.hpp:6636
MS_conversion_dynode_electron_multiplier
MS_conversion_dynode_electron_multiplier
conversion dynode electron multiplier: A surface that is held at high potential so that ions striking...
Definition: cv.hpp:645
UO_megabyte
UO_megabyte
megabyte: An information unit which is equal to 1000 kB.
Definition: cv.hpp:14502
MS_metabolic_labelling__heavy_N__mainly_15N_
MS_metabolic_labelling__heavy_N__mainly_15N_
metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
Definition: cv.hpp:6654
MS_Bruker_U2_nativeID_format
MS_Bruker_U2_nativeID_format
Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd...
Definition: cv.hpp:3168
MS_peak_intensity
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
Definition: cv.hpp:402
MS_PTM_localization_result_list_statistic
MS_PTM_localization_result_list_statistic
PTM localization result list statistic: Statistic for all items derived from a post-translational mod...
Definition: cv.hpp:8529
MS_Velos_Plus
MS_Velos_Plus
Velos Plus: Thermo Scientific second generation Velos.
Definition: cv.hpp:6141
MS_4000_Series_Explorer_Software
MS_4000_Series_Explorer_Software
4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis...
Definition: cv.hpp:2649
MS_SRM_proteingroup_level_quantitation
MS_SRM_proteingroup_level_quantitation
SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
Definition: cv.hpp:7299
MS_ACQUITY_UPLC
MS_ACQUITY_UPLC
ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
Definition: cv.hpp:5697
MS_Gel_image_file_URI
MS_Gel_image_file_URI
Gel image file URI: URI of one gel image file associated to one PX submission.
Definition: cv.hpp:9003
MS_ProteinExtractor_IncludeIdentified
MS_ProteinExtractor_IncludeIdentified
ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
Definition: cv.hpp:4677
MS_Pepitome_MVH
MS_Pepitome_MVH
Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5172
MS_search_database_details
MS_search_database_details
search database details: Details about the database searched.
Definition: cv.hpp:3531
UNIMOD_Asp__Cys
UNIMOD_Asp__Cys
Asp->Cys: Asp->Cys substitution.
Definition: cv.hpp:11457
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
Definition: cv.hpp:12981
UNIMOD_Asp__Thr
UNIMOD_Asp__Thr
Asp->Thr: Asp->Thr substitution.
Definition: cv.hpp:11484
MS_ProteinScape_second_round_Phenyx
MS_ProteinScape_second_round_Phenyx
ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
Definition: cv.hpp:6318
MS_Mascot_DAT_format
MS_Mascot_DAT_format
Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
Definition: cv.hpp:4032
MS_multiphoton_ionization
MS_multiphoton_ionization
multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are ab...
Definition: cv.hpp:1077
UO_milliliter
UO_milliliter
milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L,...
Definition: cv.hpp:14097
UNIMOD_Glu__Ser
UNIMOD_Glu__Ser
Glu->Ser: Glu->Ser substitution.
Definition: cv.hpp:11514
UO_electrical_conduction_unit
UO_electrical_conduction_unit
electrical conduction unit: A unit which represents a standard measurement of the movement of electri...
Definition: cv.hpp:14583
MS_TOPP_OpenSwathAnalyzer
MS_TOPP_OpenSwathAnalyzer
TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
Definition: cv.hpp:7041
UNIMOD_phenylsulfonylethyl
UNIMOD_phenylsulfonylethyl
phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
Definition: cv.hpp:12261
MS_raw_file_attribute
MS_raw_file_attribute
raw file attribute: Attribute describing a raw file.
Definition: cv.hpp:5865
MS_ProteomeDiscoverer_Minimal_peptide_weight
MS_ProteomeDiscoverer_Minimal_peptide_weight
ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability...
Definition: cv.hpp:5595
UNIMOD_Pro__Tyr
UNIMOD_Pro__Tyr
Pro->Tyr: Pro->Tyr substitution.
Definition: cv.hpp:11781
MS_database_IPI_rat
MS_database_IPI_rat
database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
Definition: cv.hpp:4260
MS_Progenesis_MetaScope_score
MS_Progenesis_MetaScope_score
Progenesis MetaScope score: The confidence score produced by Progenesis QI.
Definition: cv.hpp:9090
MS_MS_MS_in_Space_OBSOLETE
MS_MS_MS_in_Space_OBSOLETE
MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z an...
Definition: cv.hpp:1575
MS_intensity_normalization
MS_intensity_normalization
intensity normalization: Normalization of data point intensities.
Definition: cv.hpp:4857
MS_TOPP_CompNovoCID
MS_TOPP_CompNovoCID
TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-ind...
Definition: cv.hpp:6984
UNIMOD_Delta_H_2_C_2_
UNIMOD_Delta_H_2_C_2_
Delta:H(2)C(2): Acetaldehyde +26.
Definition: cv.hpp:9801
MS_MAT95XP_Trap
MS_MAT95XP_Trap
MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
Definition: cv.hpp:894
UNIMOD_Carboxymethyl_13C_2_
UNIMOD_Carboxymethyl_13C_2_
Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
Definition: cv.hpp:10944
MS_dried_droplet_MALDI_matrix_preparation
MS_dried_droplet_MALDI_matrix_preparation
dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
Definition: cv.hpp:3204
MS_Bruker_Daltonics_apex_series
MS_Bruker_Daltonics_apex_series
Bruker Daltonics apex series: Bruker Daltonics' apex series.
Definition: cv.hpp:5067
MS_Acquity_UPLC_FLR
MS_Acquity_UPLC_FLR
Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
Definition: cv.hpp:3156
UO_nmole_disk
UO_nmole_disk
nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/con...
Definition: cv.hpp:14631
MS_method_file_format
MS_method_file_format
method file format: Attribute describing a method file format.
Definition: cv.hpp:6831
MS_protein_group_level_q_value
MS_protein_group_level_q_value
protein group-level q-value: Estimation of the q-value for protein groups.
Definition: cv.hpp:7569
UO_femtogram
UO_femtogram
femtogram: A mass unit which is equal to 10^[-15] g.
Definition: cv.hpp:13881
UNIMOD_Hex_2_HexNAc_3_
UNIMOD_Hex_2_HexNAc_3_
Hex(2)HexNAc(3): Hex(2) HexNAc(3).
Definition: cv.hpp:12897
UNIMOD_Formylasparagine
UNIMOD_Formylasparagine
Formylasparagine: In Bachi as Formylaspargine (typo?).
Definition: cv.hpp:13599
UO_kilometer_per_hour
UO_kilometer_per_hour
kilometer per hour: A speed/velocity unit which is equal to the speed of an object traveling 1 kilome...
Definition: cv.hpp:14817
MS_SRM_protein_level_quantitation
MS_SRM_protein_level_quantitation
SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
Definition: cv.hpp:7296
MS_decoy_MRM_transition
MS_decoy_MRM_transition
decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample an...
Definition: cv.hpp:6465
UO_thou
UO_thou
thou: A length unit which is equal to 0.0254 millimetres.
Definition: cv.hpp:14829
MS_param__y_ion
MS_param__y_ion
param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
Definition: cv.hpp:4212
MS_consensus_result
MS_consensus_result
consensus result: Indicates a consensus result from several search engine runs.
Definition: cv.hpp:7395
MS_source_potential
MS_source_potential
source potential: Potential difference at the MS source in volts.
Definition: cv.hpp:2058
UNIMOD_Lys__Asn
UNIMOD_Lys__Asn
Lys->Asn: Lys->Asn substitution.
Definition: cv.hpp:10542
UO_gallon
UO_gallon
gallon: An imperial volume unit which is equivalent to 4,546.09 millilitres, or 8 pints.
Definition: cv.hpp:14883
MS_Q_Tof_micro
MS_Q_Tof_micro
Q-Tof micro: Waters oa-ToF based Q-Tof micro.
Definition: cv.hpp:930
MS_TOPP_MapRTTransformer
MS_TOPP_MapRTTransformer
TOPP MapRTTransformer: Applies retention time transformations to maps.
Definition: cv.hpp:6966
MS_transition
MS_transition
transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in com...
Definition: cv.hpp:3429
MS_PRIDE_XML
MS_PRIDE_XML
PRIDE XML: Internal data and submission format of the PRIDE database.
Definition: cv.hpp:8253
MS_Byonic_Score
MS_Byonic_Score
Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects...
Definition: cv.hpp:7233
MS_charge_stripping
MS_charge_stripping
charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal...
Definition: cv.hpp:1164
UNIMOD_BHTOH
UNIMOD_BHTOH
BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
Definition: cv.hpp:10302
MS_6570_Q_TOF_LC_MS
MS_6570_Q_TOF_LC_MS
6570 Q-TOF LC/MS: The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8799
UNIMOD_CarboxymethylDMAP
UNIMOD_CarboxymethylDMAP
CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
Definition: cv.hpp:12204
MS_Regular_expression_for_adduct_ion_formula
MS_Regular_expression_for_adduct_ion_formula
Regular expression for adduct ion formula: ([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br...
Definition: cv.hpp:8856
MS_Phenyx_Modif
MS_Phenyx_Modif
Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptid...
Definition: cv.hpp:4602
MS_TopMG_use_ASF_DIAGONAL
MS_TopMG_use_ASF_DIAGONAL
TopMG:use ASF-DIAGONAL: Protein filtering using ASF-DIAGONAL method.
Definition: cv.hpp:9270
MS_V8_DE
MS_V8_DE
V8-DE: Cleavage agent V8-DE.
Definition: cv.hpp:4353
MS_consecutive_reaction_monitoring_OBSOLETE_1000244
MS_consecutive_reaction_monitoring_OBSOLETE_1000244
consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in wh...
Definition: cv.hpp:1158
UNIMOD_serotonylation
UNIMOD_serotonylation
serotonylation: 5-glutamyl serotonin.
Definition: cv.hpp:13797
UNIMOD_Unknown_420
UNIMOD_Unknown_420
Unknown:420: Unidentified modification of 420.0506 found in open search.
Definition: cv.hpp:13779
MS_Asp_N_ambic
MS_Asp_N_ambic
Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
Definition: cv.hpp:4323
MS_6510_Quadrupole_Time_of_Flight_LC_MS
MS_6510_Quadrupole_Time_of_Flight_LC_MS
6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2697
PEFF_ModResPsi
PEFF_ModResPsi
ModResPsi: Modified residue with PSI-MOD identifier.
Definition: cv.hpp:210
MS_Proteinscape_spectra
MS_Proteinscape_spectra
Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
Definition: cv.hpp:4986
MS_protein_level_q_value
MS_protein_level_q_value
protein-level q-value: Estimation of the q-value for proteins.
Definition: cv.hpp:6021
MS_spectrum_interpretation
MS_spectrum_interpretation
spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing t...
Definition: cv.hpp:3513
MS_modification_position_score
MS_modification_position_score
modification position score: Modification position score.
Definition: cv.hpp:7968
MS_SEQUEST_FormatAndLinks
MS_SEQUEST_FormatAndLinks
SEQUEST:FormatAndLinks:
Definition: cv.hpp:3819
UNIMOD_Thr__Asp
UNIMOD_Thr__Asp
Thr->Asp: Thr->Asp substitution.
Definition: cv.hpp:11865
UNIMOD_Met__Asn
UNIMOD_Met__Asn
Met->Asn: Met->Asn substitution.
Definition: cv.hpp:11700
UNIMOD_Xle__Glu
UNIMOD_Xle__Glu
Xle->Glu: Leu/Ile->Glu substitution.
Definition: cv.hpp:11637
UO_count_per_nanomolar_second
UO_count_per_nanomolar_second
count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
Definition: cv.hpp:14640
MS_electromagnetic_radiation_spectrum
MS_electromagnetic_radiation_spectrum
electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as ...
Definition: cv.hpp:3105
MS_cone_voltage
MS_cone_voltage
cone voltage: Potential difference between the sampling cone/orifice in volts.
Definition: cv.hpp:3330
MS_SEQUEST_sprank
MS_SEQUEST_sprank
SEQUEST:sprank: The SEQUEST result 'SpRank'.
Definition: cv.hpp:7194
MS_TOPP_MapAlignerIdentification
MS_TOPP_MapAlignerIdentification
TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common pepti...
Definition: cv.hpp:6891
UNIMOD_Cation_Ag
UNIMOD_Cation_Ag
Cation:Ag: Replacement of proton by silver.
Definition: cv.hpp:11202
MS_Waters_nativeID_format__combined_spectra
MS_Waters_nativeID_format__combined_spectra
Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combi...
Definition: cv.hpp:8403
MS_spectrum_same_set_protein
MS_spectrum_same_set_protein
spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein,...
Definition: cv.hpp:5199
PEFF_EV
PEFF_EV
EV: Entry version.
Definition: cv.hpp:198
UNIMOD_Hex_10_HexNAc_1_
UNIMOD_Hex_10_HexNAc_1_
Hex(10)HexNAc(1): Hex(10) HexNAc(1).
Definition: cv.hpp:13728
MS_quadrupole_ion_trap
MS_quadrupole_ion_trap
quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion t...
Definition: cv.hpp:546
MS_6560_Q_TOF_LC_MS
MS_6560_Q_TOF_LC_MS
6560 Q-TOF LC/MS: The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8796
MS_single_reaction_monitoring_OBSOLETE
MS_single_reaction_monitoring_OBSOLETE
single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:627
UO_pico
UO_pico
pico: A prefix in the metric system denoting a factor of 10 to the power of -12.
Definition: cv.hpp:14703
UNIMOD_Methyl_2H_3_
UNIMOD_Methyl_2H_3_
Methyl:2H(3): Deuterated methyl ester.
Definition: cv.hpp:9894
MS_surface_enhanced_laser_desorption_ionization
MS_surface_enhanced_laser_desorption_ionization
surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from ...
Definition: cv.hpp:1365
MS_Bioworks_SRF_format
MS_Bioworks_SRF_format
Bioworks SRF format: Thermo Finnigan SRF file format.
Definition: cv.hpp:2895
MS_PEAKS_Node
MS_PEAKS_Node
PEAKS Node: PEAKS Node software for high throughput data analysis.
Definition: cv.hpp:6267
MS_6495A_Triple_Quadrupole_LC_MS
MS_6495A_Triple_Quadrupole_LC_MS
6495A Triple Quadrupole LC/MS: The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography i...
Definition: cv.hpp:8820
MS_BaselineFilter
MS_BaselineFilter
BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
Definition: cv.hpp:2928
MS_number_of_molecular_hypothesis_considered
MS_number_of_molecular_hypothesis_considered
number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the nu...
Definition: cv.hpp:3990
MS_GCT
MS_GCT
GCT: Waters oa-ToF based GCT.
Definition: cv.hpp:843
UO_terabyte
UO_terabyte
terabyte: An information unit which is equal to 1000 gigabytes.
Definition: cv.hpp:14793
UNIMOD_ZGB
UNIMOD_ZGB
ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
Definition: cv.hpp:11019
MS_mean_drift_time_array
MS_mean_drift_time_array
mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time valu...
Definition: cv.hpp:7881
MS_6410_Triple_Quadrupole_LC_MS
MS_6410_Triple_Quadrupole_LC_MS
6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:2028
MS_peptide_attribute_calculation_software
MS_peptide_attribute_calculation_software
peptide attribute calculation software: Software used to predict or calculate numerical attributes of...
Definition: cv.hpp:3321
MS_peptide_sequence_level_identification_attribute
MS_peptide_sequence_level_identification_attribute
peptide sequence-level identification attribute: Peptide level information.
Definition: cv.hpp:3774
MS_charge_exchange_ionization
MS_charge_exchange_ionization
charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on...
Definition: cv.hpp:1728
UNIMOD_Trp__Phe
UNIMOD_Trp__Phe
Trp->Phe: Trp->Phe substitution.
Definition: cv.hpp:11934
MS_nth_generation_product_ion_OBSOLETE
MS_nth_generation_product_ion_OBSOLETE
nth generation product ion: Serial product ions from dissociation of selected precursor ions where n ...
Definition: cv.hpp:1581
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_
dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
Definition: cv.hpp:12669
MS_ion
MS_ion
ion: An atomic or molecular species having a net positive or negative electric charge.
Definition: cv.hpp:8838
MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold
MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold
ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
Definition: cv.hpp:7401
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
Definition: cv.hpp:5244
MS_dissociation_method
MS_dissociation_method
dissociation method: Fragmentation method used for dissociation or fragmentation.
Definition: cv.hpp:408
MS_solution
MS_solution
solution: State if the sample is in solution form.
Definition: cv.hpp:429
UO_century
UO_century
century: A time unit which is equal to 100 years.
Definition: cv.hpp:14250
MS_MassIVE_dataset_URI
MS_MassIVE_dataset_URI
MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository....
Definition: cv.hpp:7914
MS_mass_trace_reporting__rectangles
MS_mass_trace_reporting__rectangles
mass trace reporting: rectangles: The mass trace of the features of this feature list specifies recta...
Definition: cv.hpp:5892
MS_IdentityE_Score
MS_IdentityE_Score
IdentityE Score: Waters IdentityE peptide score.
Definition: cv.hpp:5106
MS_TOPP_OpenSwathChromatogramExtractor
MS_TOPP_OpenSwathChromatogramExtractor
TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
Definition: cv.hpp:7044
MS_peptide_unique_to_one_protein
MS_peptide_unique_to_one_protein
peptide unique to one protein: A peptide matching only one.
Definition: cv.hpp:4497
MS_ambiguous_residues
MS_ambiguous_residues
ambiguous residues: Children of this term describe ambiguous residues.
Definition: cv.hpp:4485
UO_millimetres_of_mercury
UO_millimetres_of_mercury
millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep ...
Definition: cv.hpp:14613
MS_iProX_dataset_identifier
MS_iProX_dataset_identifier
iProX dataset identifier: Dataset identifier issued by the iProX repository. A dataset can refer to e...
Definition: cv.hpp:8931
MS_data_processing_software
MS_data_processing_software
data processing software: Data processing software.
Definition: cv.hpp:4770
MS_data_processing_parameter
MS_data_processing_parameter
data processing parameter: Data processing parameter used in the data processing performed on the dat...
Definition: cv.hpp:2562
MS_ProteinExtractor_MaxNumberOfProteins
MS_ProteinExtractor_MaxNumberOfProteins
ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
Definition: cv.hpp:4680
UNIMOD_Ser__Xle
UNIMOD_Ser__Xle
Ser->Xle: Ser->Leu/Ile substitution.
Definition: cv.hpp:10722
MS_global_FLR
MS_global_FLR
global FLR: Global false localization rate for all localizations in a dataset.
Definition: cv.hpp:8532
UNIMOD_Val__Thr
UNIMOD_Val__Thr
Val->Thr: Val->Thr substitution.
Definition: cv.hpp:11916
UNIMOD_Gly__His
UNIMOD_Gly__His
Gly->His: Gly->His substitution.
Definition: cv.hpp:11568
pwiz::cv::cvTermInfo
PWIZ_API_DECL const CVTermInfo & cvTermInfo(CVID cvid)
returns CV term info for the specified CVID
UNIMOD_His__Gln
UNIMOD_His__Gln
His->Gln: His->Gln substitution.
Definition: cv.hpp:10521
MS_SEQUEST_PeptideNumber
MS_SEQUEST_PeptideNumber
SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
Definition: cv.hpp:4080
UNIMOD_Hex_3_HexNAc_1_Me_1_
UNIMOD_Hex_3_HexNAc_1_Me_1_
Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
Definition: cv.hpp:12795
UNIMOD_Gln__Xle
UNIMOD_Gln__Xle
Gln->Xle: Gln->Leu/Ile substitution.
Definition: cv.hpp:10659
UNIMOD_His__Phe
UNIMOD_His__Phe
His->Phe: His->Phe substitution.
Definition: cv.hpp:11604
MS_Byonic_Best_LogProb
MS_Byonic_Best_LogProb
Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
Definition: cv.hpp:7251
UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_
dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:13014
pwiz::cv::CV::operator==
bool operator==(const CV &that) const
returns true iff id, URI, fullName, and version are all pairwise equal
MS_Exactive
MS_Exactive
Exactive: Thermo Scientific Exactive MS.
Definition: cv.hpp:2619
UO_candela
UO_candela
candela: A luminous intensity unit which equal to the luminous intensity, in a given direction,...
Definition: cv.hpp:13845
MS_emPAI_value
MS_emPAI_value
emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
Definition: cv.hpp:6129
MS_highest_observed_m_z
MS_highest_observed_m_z
highest observed m/z: Highest m/z value observed in the m/z array.
Definition: cv.hpp:2187
UNIMOD_Hex_1_HexNAc_3_NeuAc_2_
UNIMOD_Hex_1_HexNAc_3_NeuAc_2_
Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
Definition: cv.hpp:13119
MS_spectrum_from_database_string_nativeID_format
MS_spectrum_from_database_string_nativeID_format
spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
Definition: cv.hpp:5001
MS_GD_MS
MS_GD_MS
GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at t...
Definition: cv.hpp:1251
MS_proteomics_solution_1
MS_proteomics_solution_1
proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
Definition: cv.hpp:924
MS_pepXML_format
MS_pepXML_format
pepXML format: The XML-based pepXML file format for encoding PSM information, created and maintained ...
Definition: cv.hpp:4662
PEFF_DbVersion
PEFF_DbVersion
DbVersion: Database version (release date) according to database provider.
Definition: cv.hpp:144
MS_frag__a_ion
MS_frag__a_ion
frag: a ion: Fragmentation information, type of product: a ion.
Definition: cv.hpp:4119
MS_residue_pair_level_global_FDR
MS_residue_pair_level_global_FDR
residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cros...
Definition: cv.hpp:8490
UNIMOD_Thiadiazole
UNIMOD_Thiadiazole
Thiadiazole: Thiadiazolydation of Cys.
Definition: cv.hpp:11364
pwiz::cv::CVTermInfo::prefix
std::string prefix() const
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_
Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
Definition: cv.hpp:13008
MS_high_energy_collision_OBSOLETE
MS_high_energy_collision_OBSOLETE
high energy collision: Collision-induced dissociation process wherein the projectile ion has laborato...
Definition: cv.hpp:1836
UO_unit_per_milliliter
UO_unit_per_milliliter
unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amo...
Definition: cv.hpp:14331
MS_SEQUEST_input_parameter
MS_SEQUEST_input_parameter
SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
Definition: cv.hpp:6738
MS_beta_cleavage_OBSOLETE
MS_beta_cleavage_OBSOLETE
beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the...
Definition: cv.hpp:1806
MS_orbitrap
MS_orbitrap
orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner ...
Definition: cv.hpp:2052
UNIMOD_Asn__Ser
UNIMOD_Asn__Ser
Asn->Ser: Asn->Ser substitution.
Definition: cv.hpp:10602
MS_ProteomeDiscoverer_Amanda_high_confidence_threshold
MS_ProteomeDiscoverer_Amanda_high_confidence_threshold
ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
Definition: cv.hpp:7398
MS_proteoform_level_identification_attribute
MS_proteoform_level_identification_attribute
proteoform-level identification attribute: Proteoform level information.
Definition: cv.hpp:9135
MS_monoisotopic_mass_OBSOLETE
MS_monoisotopic_mass_OBSOLETE
monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isot...
Definition: cv.hpp:1068
MS_electron_energy_obsolete_OBSOLETE
MS_electron_energy_obsolete_OBSOLETE
electron energy obsolete: The potential difference through which electrons are accelerated before the...
Definition: cv.hpp:1026
UNIMOD_Ala__Phe
UNIMOD_Ala__Phe
Ala->Phe: Ala->Phe substitution.
Definition: cv.hpp:11391
UO_percent
UO_percent
percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
Definition: cv.hpp:14358
MS_fragment_ion_OBSOLETE
MS_fragment_ion_OBSOLETE
fragment ion: A product ion that results from the dissociation of a precursor ion.
Definition: cv.hpp:1665
MS_TopPIC_MIScore_threshold
MS_TopPIC_MIScore_threshold
TopPIC:MIScore threshold: TopPIC:MIScore threshold.
Definition: cv.hpp:9222
UNIMOD_Butyryl
UNIMOD_Butyryl
Butyryl: Butyryl.
Definition: cv.hpp:12087
MS_alpha_cleavage_OBSOLETE
MS_alpha_cleavage_OBSOLETE
alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to th...
Definition: cv.hpp:1803
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
Hex(1)HexNAc(1)NeuAc(2): Hex HexNAc NeuAc(2) —OR— Hex HexNAc(3) HexA.
Definition: cv.hpp:9705
UO_centiRay
UO_centiRay
centiRay: A unit of genetic map distance defined corresponding to an interval in which there is a 1% ...
Definition: cv.hpp:14778
MS_decoy_DB_from_IPI_human_OBSOLETE
MS_decoy_DB_from_IPI_human_OBSOLETE
decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
Definition: cv.hpp:4302
MS_ESI
MS_ESI
ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from ...
Definition: cv.hpp:510
MS_suface_ionization_OBSOLETE
MS_suface_ionization_OBSOLETE
suface ionization: The ionization of a neutral species when it interacts with a solid surface with an...
Definition: cv.hpp:1377
MS_base_peak_intensity
MS_base_peak_intensity
base peak intensity: The intensity of the greatest peak in the mass spectrum.
Definition: cv.hpp:2121
UNIMOD_SPITC
UNIMOD_SPITC
SPITC: 4-sulfophenyl isothiocyanate.
Definition: cv.hpp:9819
MS_Conventional_ion_OBSOLETE
MS_Conventional_ion_OBSOLETE
Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin a...
Definition: cv.hpp:1650
UO_cells_per_well
UO_cells_per_well
cells per well: A unit of cell concentration which is equal to 1 cell in a well or discrete container...
Definition: cv.hpp:14748
MS_contact_phone_number
MS_contact_phone_number
contact phone number: Phone number of the contact person or organization.
Definition: cv.hpp:5679
MS_HCT
MS_HCT
HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:846
UNIMOD_LG_lactam_R
UNIMOD_LG_lactam_R
LG-lactam-R: Levuglandinyl - arginine lactam adduct.
Definition: cv.hpp:10320
UO_millimeter
UO_millimeter
millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
Definition: cv.hpp:13851
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
Definition: cv.hpp:13164
MS_Daly
MS_Daly
Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier....
Definition: cv.hpp:654
MS_denominator_data_type_attribute
MS_denominator_data_type_attribute
denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
Definition: cv.hpp:6903
MS_DB_MW_filter_minimum
MS_DB_MW_filter_minimum
DB MW filter minimum: Minimum value of molecular weight filter.
Definition: cv.hpp:4041
MS_database_local_file_path_OBSOLETE
MS_database_local_file_path_OBSOLETE
database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search...
Definition: cv.hpp:3540
UNIMOD_Methyl_Deamidated
UNIMOD_Methyl_Deamidated
Methyl+Deamidated: Deamidation followed by a methylation.
Definition: cv.hpp:10362
MS_search_tolerance_plus_value
MS_search_tolerance_plus_value
search tolerance plus value:
Definition: cv.hpp:4635
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-,...
Definition: cv.hpp:5223
UNIMOD_Glu__pyro_Glu
UNIMOD_Glu__pyro_Glu
Glu->pyro-Glu: Pyro-glu from E.
Definition: cv.hpp:9432
MS_PIA_PSM_sets_created
MS_PIA_PSM_sets_created
PIA:PSM sets created: Indicates whether PSM sets were created.
Definition: cv.hpp:7626
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_
dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:12606
MS_ProteoWizard_idconvert
MS_ProteoWizard_idconvert
ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics expe...
Definition: cv.hpp:7065
UNIMOD_Pro__His
UNIMOD_Pro__His
Pro->His: Pro->His substitution.
Definition: cv.hpp:10629
MS_nativeID_format
MS_nativeID_format
nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers ar...
Definition: cv.hpp:2973
MS_Xevo_TQD
MS_Xevo_TQD
Xevo TQD: Waters quadrupole based Xevo TQD.
Definition: cv.hpp:5787
MS_PolarisQ
MS_PolarisQ
PolarisQ: ThermoFinnigan PolarisQ MS.
Definition: cv.hpp:921
MS_data_stored_in_database
MS_data_stored_in_database
data stored in database: Source file for this mzIdentML was a data set in a database.
Definition: cv.hpp:3780
MS_Phenyx_MaxPepPvalue
MS_Phenyx_MaxPepPvalue
Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identific...
Definition: cv.hpp:4563
MS_mass_limit_OBSOLETE
MS_mass_limit_OBSOLETE
mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
Definition: cv.hpp:1497
MS_TMT_reagent_130N
MS_TMT_reagent_130N
TMT reagent 130N: The name of the sample labelled with the TMT reagent 130N.
Definition: cv.hpp:8727
UNIMOD_Arg__Tyr
UNIMOD_Arg__Tyr
Arg->Tyr: Arg->Tyr substitution.
Definition: cv.hpp:11835
MS_Reprocessed_complete_dataset
MS_Reprocessed_complete_dataset
Reprocessed complete dataset: All the raw files included in the original dataset (or group of origina...
Definition: cv.hpp:9006
MS_LCMS_IT_TOF
MS_LCMS_IT_TOF
LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
Definition: cv.hpp:2472
UNIMOD_CresylSaligeninPhosphate
UNIMOD_CresylSaligeninPhosphate
CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
Definition: cv.hpp:12021
UNIMOD_Asp__Val
UNIMOD_Asp__Val
Asp->Val: Asp->Val substitution.
Definition: cv.hpp:10455
UO_illuminance_unit
UO_illuminance_unit
illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
Definition: cv.hpp:14148
UNIMOD_dHex_1_Hex_6_HexNAc_4_
UNIMOD_dHex_1_Hex_6_HexNAc_4_
dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
Definition: cv.hpp:12726
UO_tesla
UO_tesla
tesla: A magnetic flux density unit which is equal to one weber per square meter.
Definition: cv.hpp:14481
MS_DSQ
MS_DSQ
DSQ: ThermoFinnigan DSQ GC-MS.
Definition: cv.hpp:2574
MS_SEQUEST_ViewCV
MS_SEQUEST_ViewCV
SEQUEST:ViewCV: SEQUEST View Input Parameters.
Definition: cv.hpp:3519
MS_ionization_efficiency
MS_ionization_efficiency
ionization efficiency: The ratio of the number of ions formed to the number of electrons,...
Definition: cv.hpp:1749
MS_selected_ion_monitoring_spectrum
MS_selected_ion_monitoring_spectrum
selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2388
UO_gram
UO_gram
gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
Definition: cv.hpp:13866
UNIMOD_dHex_2_Hex_3_HexNAc_4_NeuAc_1_
UNIMOD_dHex_2_Hex_3_HexNAc_4_NeuAc_1_
dHex(2)Hex(3)HexNAc(4)NeuAc(1): DHex(2) Hex(3) HexNAc(4) NeuAc.
Definition: cv.hpp:13737
UNIMOD_dHex_2_Hex_2_HexNAc_2_
UNIMOD_dHex_2_Hex_2_HexNAc_2_
dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
Definition: cv.hpp:13323
UNIMOD_Arg__Glu
UNIMOD_Arg__Glu
Arg->Glu: Arg->Glu substitution.
Definition: cv.hpp:11826
UNIMOD_Malonyl
UNIMOD_Malonyl
Malonyl: Malonylation.
Definition: cv.hpp:10899
MS_HCD
MS_HCD
HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs ...
Definition: cv.hpp:1842
UNIMOD_Ub_Br2
UNIMOD_Ub_Br2
Ub-Br2: Ub Bromide probe addition.
Definition: cv.hpp:12024
UNIMOD_Met__His
UNIMOD_Met__His
Met->His: Met->His substitution.
Definition: cv.hpp:11697
MS_normalization_to_mean_of_sum_of_all_proteins
MS_normalization_to_mean_of_sum_of_all_proteins
normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum ...
Definition: cv.hpp:6000
MS_baseline_reduction
MS_baseline_reduction
baseline reduction: A process of removal of varying intensities generated due to variable energy abso...
Definition: cv.hpp:2430
MS_sustained_off_resonance_irradiation
MS_sustained_off_resonance_irradiation
sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron reso...
Definition: cv.hpp:1389
UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_
UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_
dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
Definition: cv.hpp:12462
MS_EI_OBSOLETE
MS_EI_OBSOLETE
EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically acc...
Definition: cv.hpp:504
MS_precoated_MALDI_sample_plate
MS_precoated_MALDI_sample_plate
precoated MALDI sample plate: Precoated MALDI sample plate.
Definition: cv.hpp:3213
UO_mass_per_unit_volume
UO_mass_per_unit_volume
mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in ...
Definition: cv.hpp:14337
MS_SCIEX_TOF_TOF_Series_Explorer_Software
MS_SCIEX_TOF_TOF_Series_Explorer_Software
SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisi...
Definition: cv.hpp:4854
UNIMOD_Methylphosphonate
UNIMOD_Methylphosphonate
Methylphosphonate: Methylphosphonylation.
Definition: cv.hpp:10851
MS_MS1_label_based_protein_level_quantitation
MS_MS1_label_based_protein_level_quantitation
MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
Definition: cv.hpp:6441
UNIMOD_dHex_2_Hex_4_HexNAc_1_
UNIMOD_dHex_2_Hex_4_HexNAc_1_
dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
Definition: cv.hpp:13005
UNIMOD_Nethylmaleimide_water
UNIMOD_Nethylmaleimide_water
Nethylmaleimide+water: Nethylmaleimidehydrolysis.
Definition: cv.hpp:9945
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that eac...
Definition: cv.hpp:5394
MS_NoiseFilter_OBSOLETE
MS_NoiseFilter_OBSOLETE
NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
Definition: cv.hpp:2955
UNIMOD_Thiazolidine
UNIMOD_Thiazolidine
Thiazolidine: Formaldehyde adduct.
Definition: cv.hpp:11307
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_
Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
Definition: cv.hpp:12876
MS_mzidLib_FalseDiscoveryRate
MS_mzidLib_FalseDiscoveryRate
mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML f...
Definition: cv.hpp:7179
UNIMOD_Hex_3_HexNAc_6_NeuAc_1_
UNIMOD_Hex_3_HexNAc_6_NeuAc_1_
Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
Definition: cv.hpp:12768
UNIMOD_OxLysBiotin
UNIMOD_OxLysBiotin
OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:9579
MS_OMSSA_input_parameter
MS_OMSSA_input_parameter
OMSSA input parameter: Search engine input parameters specific to OMSSA.
Definition: cv.hpp:6747
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5487
MS_multiple_peak_list_nativeID_format
MS_multiple_peak_list_nativeID_format
multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
Definition: cv.hpp:2994
MS_Byonic_Best_Score
MS_Byonic_Best_Score
Byonic:Best Score: Best (largest) Byonic score of a PSM.
Definition: cv.hpp:7254
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr paramete...
Definition: cv.hpp:5529
MS_ultima
MS_ultima
ultima: IonSpec Ultima MS.
Definition: cv.hpp:966
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_
dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc —OR— Hex(2) HexNAc(3) NeuAc.
Definition: cv.hpp:13044
MS_protein_name
MS_protein_name
protein name: A long name describing the function of the protein.
Definition: cv.hpp:3360
UNIMOD_Fluorescein
UNIMOD_Fluorescein
Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
Definition: cv.hpp:9618
MS_MS_GF_EValue
MS_MS_GF_EValue
MS-GF:EValue: MS-GF E-value.
Definition: cv.hpp:6609
UNIMOD_Cation_Ca_II_
UNIMOD_Cation_Ca_II_
Cation:Ca[II]: Replacement of 2 protons by calcium.
Definition: cv.hpp:11190
MS_genome_reference_version
MS_genome_reference_version
genome reference version: The reference genome and versioning string as used for mapping....
Definition: cv.hpp:8388
MS_TissueView_Software
MS_TissueView_Software
TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
Definition: cv.hpp:2661
MS_ProteomeDiscoverer_Number_of_input4_spectra
MS_ProteomeDiscoverer_Number_of_input4_spectra
ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
Definition: cv.hpp:5607
MS_TopMG_variable_PTM_number_in_proteoform_graph_gap
MS_TopMG_variable_PTM_number_in_proteoform_graph_gap
TopMG:variable PTM number in proteoform graph gap: Maximum number of variable PTMs in a proteoform gr...
Definition: cv.hpp:9267
UNIMOD_Cys__Ser
UNIMOD_Cys__Ser
Cys->Ser: Cys->Ser substitution.
Definition: cv.hpp:10422
MS_sampling_frequency
MS_sampling_frequency
sampling frequency: The rate of signal sampling (measurement) with respect to time.
Definition: cv.hpp:351
MS_MassHunter_Mass_Profiler
MS_MassHunter_Mass_Profiler
MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS d...
Definition: cv.hpp:2724
MS_protXML_format
MS_protXML_format
protXML format: The XML-based protXML file format for encoding protein identifications,...
Definition: cv.hpp:4665
MS_PeptideShaker_peptide_confidence
MS_PeptideShaker_peptide_confidence
PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
Definition: cv.hpp:7857
MS_Phenyx_Trust_Parent_Charge
MS_Phenyx_Trust_Parent_Charge
Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state i...
Definition: cv.hpp:4542
UO_quarter
UO_quarter
quarter: An imperial mass unit which is equivalent to 12.700,586,36 kilograms, or 28 pounds.
Definition: cv.hpp:14901
MS_SPS
MS_SPS
SPS (synchronous prefilter selection): Synchronous prefilter selection.
Definition: cv.hpp:8037
MS_ProteomeDiscoverer_Lowest_Charge_State
MS_ProteomeDiscoverer_Lowest_Charge_State
ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
Definition: cv.hpp:5337
MS_protein_level_result_list_statistic
MS_protein_level_result_list_statistic
protein-level result list statistic: A statistical metric of an entire protein list.
Definition: cv.hpp:8571
MS_first_column_elution_time
MS_first_column_elution_time
first column elution time: The time of elution from the first chromatographic column in the chromatog...
Definition: cv.hpp:6696
MS_regular_expression_for_a_digital_object_identifier__DOI_
MS_regular_expression_for_a_digital_object_identifier__DOI_
(?:[.][0-9]+)*‍/(?:(?!["&\'<>])[^ \t\r \v\f])+).
Definition: cv.hpp:7890
UO_volume_per_unit_volume
UO_volume_per_unit_volume
volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solu...
Definition: cv.hpp:14412
MS_frag__z_ion___H2O
MS_frag__z_ion___H2O
frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
Definition: cv.hpp:4956
MS_ion_mobility_drift_time
MS_ion_mobility_drift_time
ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass...
Definition: cv.hpp:7878
UNIMOD_Hex_1_HexNAc_2_dHex_1_
UNIMOD_Hex_1_HexNAc_2_dHex_1_
Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
Definition: cv.hpp:9681
MS_Compass_Security_Pack
MS_Compass_Security_Pack
Compass Security Pack: Bruker compass Security Pack software.
Definition: cv.hpp:2817
UO_meter_per_second_per_second
UO_meter_per_second_per_second
meter per second per second: An acceleration unit which is equal to the acceleration an object changi...
Definition: cv.hpp:14034
MS_Andromeda_score
MS_Andromeda_score
Andromeda:score: The probability based score of the Andromeda search engine.
Definition: cv.hpp:7464
MS_SEQUEST_OutputLines
MS_SEQUEST_OutputLines
SEQUEST:OutputLines: Number of peptide results to show.
Definition: cv.hpp:3522
UO_microgram_per_liter
UO_microgram_per_liter
microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by...
Definition: cv.hpp:14700
UNIMOD_Hex_3_HexNAc_3_Pent_1_
UNIMOD_Hex_3_HexNAc_3_Pent_1_
Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:12456
UNIMOD_Cys__Gln
UNIMOD_Cys__Gln
Cys->Gln: Cys->Gln substitution.
Definition: cv.hpp:11448
MS_InternalCalibration
MS_InternalCalibration
InternalCalibration: Applies an internal calibration.
Definition: cv.hpp:2946
MS_ProteinScape
MS_ProteinScape
ProteinScape: Bruker ProteinScape software.
Definition: cv.hpp:2871
MS_dissociative_ionization
MS_dissociative_ionization
dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to fo...
Definition: cv.hpp:1737
MS_inductively_coupled_plasma
MS_inductively_coupled_plasma
inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied ...
Definition: cv.hpp:456
MS_SEQUEST_modeCV
MS_SEQUEST_modeCV
SEQUEST:modeCV: SEQUEST Mode Input Parameters.
Definition: cv.hpp:3789
MS_neutralization_reionization_mass_spectrometry
MS_neutralization_reionization_mass_spectrometry
neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals b...
Definition: cv.hpp:1329
UNIMOD_Hex_8_HexNAc_2_
UNIMOD_Hex_8_HexNAc_2_
Hex(8)HexNAc(2): Hex(8) HexNAc(2).
Definition: cv.hpp:12597
MS_small_molecule_identification_attribute
MS_small_molecule_identification_attribute
small molecule identification attribute: Compound identification information.
Definition: cv.hpp:9108
MS_number_of_precursor_ion_observations
MS_number_of_precursor_ion_observations
number of precursor ion observations: The number of times the specific precursor ion has been observe...
Definition: cv.hpp:7131
MS_6495B_Triple_Quadrupole_LC_MS
MS_6495B_Triple_Quadrupole_LC_MS
6495B Triple Quadrupole LC/MS: The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography i...
Definition: cv.hpp:8823
UNIMOD_Arg__Met
UNIMOD_Arg__Met
Arg->Met: Arg->Met substitution.
Definition: cv.hpp:10683
MS_peak
MS_peak
peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often ...
Definition: cv.hpp:1092
UNIMOD_Diacylglycerol
UNIMOD_Diacylglycerol
Diacylglycerol: Diacylglycerol.
Definition: cv.hpp:10062
MS_search_tolerance_specification
MS_search_tolerance_specification
search tolerance specification: Specification of the search tolerance.
Definition: cv.hpp:4632
UNIMOD_Acetyldeoxyhypusine
UNIMOD_Acetyldeoxyhypusine
Acetyldeoxyhypusine: Acetyldeoxyhypusine.
Definition: cv.hpp:11382
MS_DELTA_plusAdvantage
MS_DELTA_plusAdvantage
DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
Definition: cv.hpp:825
MS_Xevo_TQ_XS
MS_Xevo_TQ_XS
Xevo TQ-XS: Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer.
Definition: cv.hpp:8610
MS_Comet_xcorr
MS_Comet_xcorr
Comet:xcorr: The Comet result 'XCorr'.
Definition: cv.hpp:7203
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
Definition: cv.hpp:5247
MS_partial_charge_transfer_reaction_OBSOLETE
MS_partial_charge_transfer_reaction_OBSOLETE
partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all...
Definition: cv.hpp:1890
UNIMOD_Hex_2_NeuAc_1_
UNIMOD_Hex_2_NeuAc_1_
Hex(2)NeuAc(1): Hex(2) NeuAc —OR— Hex HexNAc Kdn.
Definition: cv.hpp:12417
UNIMOD_Pro__Gln
UNIMOD_Pro__Gln
Pro->Gln: Pro->Gln substitution.
Definition: cv.hpp:10632
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:13080
MS_CAMERA
MS_CAMERA
CAMERA: Bioconductor package CAMERA for annotation of peak lists generated by xcms,...
Definition: cv.hpp:9036
MS_DiLeu_reagent_117
MS_DiLeu_reagent_117
DiLeu reagent 117: The name of the sample labelled with the DiLeu reagent 117.
Definition: cv.hpp:8763
MS_database_file_formats
MS_database_file_formats
database file formats: The children of this term define file formats of the sequence database used.
Definition: cv.hpp:4449
MS_maldi_spot_identifier_OBSOLETE
MS_maldi_spot_identifier_OBSOLETE
maldi spot identifier: Maldi Spot Identifier.
Definition: cv.hpp:2265
MS_post_source_decay
MS_post_source_decay
post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product...
Definition: cv.hpp:765
MS_kinetic_energy_analyzer
MS_kinetic_energy_analyzer
kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retar...
Definition: cv.hpp:1494
UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_
UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_
dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:13068
MS_feature_level_quantification_datatype
MS_feature_level_quantification_datatype
feature-level quantification datatype: The data type of the value reported in a QuantLayer for a feat...
Definition: cv.hpp:8625
MS_ProLuCID_deltacn
MS_ProLuCID_deltacn
ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.
Definition: cv.hpp:8058
UNIMOD_dHex_2_Hex_4_HexNAc_2_
UNIMOD_dHex_2_Hex_4_HexNAc_2_
dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
Definition: cv.hpp:13353
UNIMOD_Phosphopropargyl
UNIMOD_Phosphopropargyl
Phosphopropargyl: Phospho-propargylamine.
Definition: cv.hpp:11214
MS_PSD
MS_PSD
PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where p...
Definition: cv.hpp:768
UNIMOD_MicrocinC7
UNIMOD_MicrocinC7
MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
Definition: cv.hpp:10215
MS_frag__z_ion___NH3
MS_frag__z_ion___NH3
frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
Definition: cv.hpp:4959
UNIMOD_NIC
UNIMOD_NIC
NIC: Nicotinic Acid.
Definition: cv.hpp:10824
UNIMOD_Cys__Dha
UNIMOD_Cys__Dha
Cys->Dha: Dehydroalanine (from Cysteine).
Definition: cv.hpp:10041
MS_diagnostic_ion_OBSOLETE
MS_diagnostic_ion_OBSOLETE
diagnostic ion: A product ion whose formation reveals structural or compositional information of its ...
Definition: cv.hpp:1653
MS_cross_linking_result_details
MS_cross_linking_result_details
cross-linking result details: This subsection describes terms which can describe details of cross-lin...
Definition: cv.hpp:8484
MS_frag__a_ion___NH3
MS_frag__a_ion___NH3
frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
Definition: cv.hpp:4137
MS_ChromaTOF_software
MS_ChromaTOF_software
ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
Definition: cv.hpp:5811
UNIMOD_Cys__Met
UNIMOD_Cys__Met
Cys->Met: Cys->Met substitution.
Definition: cv.hpp:11439
MS_TRACE_DSQ
MS_TRACE_DSQ
TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
Definition: cv.hpp:957
MS_Cleavage_agent_regular_expression
MS_Cleavage_agent_regular_expression
Cleavage agent regular expression: Regular expressions for cleavage enzymes.
Definition: cv.hpp:3996
MS_normalized_spectral_abundance_factor
MS_normalized_spectral_abundance_factor
normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
Definition: cv.hpp:8094
UNIMOD_Val__Gln
UNIMOD_Val__Gln
Val->Gln: Val->Gln substitution.
Definition: cv.hpp:11907
MS_multiple_ion_monitoring_OBSOLETE
MS_multiple_ion_monitoring_OBSOLETE
multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values....
Definition: cv.hpp:609
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:13140
MS_frag__z_2_ion
MS_frag__z_2_ion
frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
Definition: cv.hpp:4512
MS_Mascot_identity_threshold
MS_Mascot_identity_threshold
Mascot:identity threshold: The Mascot result 'identity threshold'.
Definition: cv.hpp:4521
MS_software_input_parameter
MS_software_input_parameter
software input parameter: Software input parameters.
Definition: cv.hpp:6756
MS_scan_direction
MS_scan_direction
scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high,...
Definition: cv.hpp:315
MS_static_supply_electrospray
MS_static_supply_electrospray
static supply electrospray: The sprayer is loaded with sample once.
Definition: cv.hpp:6246
MS_apex_IV
MS_apex_IV
apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:789
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:13059
UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_
UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_
dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
Definition: cv.hpp:13242
MS_SEQUEST_InfoAndLog
MS_SEQUEST_InfoAndLog
SEQUEST:InfoAndLog:
Definition: cv.hpp:3768
MS_infusion
MS_infusion
infusion: The continuous flow of solution of a sample into the ionization source.
Definition: cv.hpp:459
MS_source_file
MS_source_file
source file (raw data file): Describes the type of file and its content.
Definition: cv.hpp:2343
MS_nier_johnson_geometry_OBSOLETE
MS_nier_johnson_geometry_OBSOLETE
nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection o...
Definition: cv.hpp:1449
MS_adduct_ion_attribute
MS_adduct_ion_attribute
adduct ion attribute: Attribute describing an adduct formation.
Definition: cv.hpp:8847
MS_OpenXQuest_match_odds
MS_OpenXQuest_match_odds
OpenXQuest:match-odds: OpenXQuest's match-odds subscore.
Definition: cv.hpp:8511
MS_doi
MS_doi
doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
Definition: cv.hpp:6186
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption io...
Definition: cv.hpp:1128
MS_Sequence_database_filters
MS_Sequence_database_filters
Sequence database filters: Sequence database filters which actually can contains values,...
Definition: cv.hpp:4941
PEFF_PE
PEFF_PE
PE: Protein Evidence; A UniprotKB code.
Definition: cv.hpp:201
MS_Byonic_Delta_Score
MS_Byonic_Delta_Score
Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with di...
Definition: cv.hpp:7236
MS_stored_waveform_inverse_fourier_transform
MS_stored_waveform_inverse_fourier_transform
stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-...
Definition: cv.hpp:1401
MS_parameter_file
MS_parameter_file
parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
Definition: cv.hpp:2889
MS_Bruker_FID_nativeID_format__combined_spectra
MS_Bruker_FID_nativeID_format__combined_spectra
Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have be...
Definition: cv.hpp:8415
MS_intermediate_PSM_list
MS_intermediate_PSM_list
intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is...
Definition: cv.hpp:7770
MS_Applied_Biosystems_software
MS_Applied_Biosystems_software
Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
Definition: cv.hpp:2742
UNIMOD_Asp__Glu
UNIMOD_Asp__Glu
Asp->Glu: Asp->Glu substitution.
Definition: cv.hpp:10452
MS_ProteinScape_second_round_Mascot
MS_ProteinScape_second_round_Mascot
ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
Definition: cv.hpp:6315
MS_Sonar_Score
MS_Sonar_Score
Sonar:Score: The Sonar score.
Definition: cv.hpp:4911
UNIMOD_Hex_3_HexNAc_5_
UNIMOD_Hex_3_HexNAc_5_
Hex(3)HexNAc(5): Hex(3) HexNAc(5).
Definition: cv.hpp:13359
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that mu...
Definition: cv.hpp:5427
MS_Xevo_G2_S_Tof
MS_Xevo_G2_S_Tof
Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
Definition: cv.hpp:7272
UNIMOD_EDEDTIDVFQQQTGG
UNIMOD_EDEDTIDVFQQQTGG
EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
Definition: cv.hpp:12324
MS_selected_ion_monitoring_chromatogram
MS_selected_ion_monitoring_chromatogram
selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements o...
Definition: cv.hpp:4812
MS_ProteinScape_SearchEvent
MS_ProteinScape_SearchEvent
ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
Definition: cv.hpp:4245
pwiz::cv::CVTermInfo::id
std::string id
Definition: cv.hpp:14946
UNIMOD_Diethylphosphothione
UNIMOD_Diethylphosphothione
Diethylphosphothione: O-diethylphosphothione.
Definition: cv.hpp:13782
UNIMOD_Ala__Tyr
UNIMOD_Ala__Tyr
Ala->Tyr: Ala->Tyr substitution.
Definition: cv.hpp:11418
MS_declustering_potential
MS_declustering_potential
declustering potential: Potential difference between the orifice and the skimmer in volts.
Definition: cv.hpp:3327
MS_Acquity_UPLC_PDA
MS_Acquity_UPLC_PDA
Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
Definition: cv.hpp:3153
MS_collisional_cross_sectional_area
MS_collisional_cross_sectional_area
collisional cross sectional area: Structural molecular descriptor for the effective interaction area ...
Definition: cv.hpp:9285
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
Definition: cv.hpp:5463
UNIMOD_Val__Pro
UNIMOD_Val__Pro
Val->Pro: Val->Pro substitution.
Definition: cv.hpp:11904
MS_moving_average_smoothing
MS_moving_average_smoothing
moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent ...
Definition: cv.hpp:3033
MS_protein_pair_level_global_FDR
MS_protein_pair_level_global_FDR
protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cro...
Definition: cv.hpp:8487
UO_pascal
UO_pascal
pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 ...
Definition: cv.hpp:14133
MS_MS_MS_in_Time_OBSOLETE
MS_MS_MS_in_Time_OBSOLETE
MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a singl...
Definition: cv.hpp:1572
MS_MALDI
MS_MALDI
MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules t...
Definition: cv.hpp:522
MS_x_Tracker
MS_x_Tracker
x-Tracker: X-Tracker generic tool for quantitative proteomics.
Definition: cv.hpp:6816
MS_Synapt_G2_MS
MS_Synapt_G2_MS
Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
Definition: cv.hpp:5748
UO_tera
UO_tera
tera: A prefix in the metric system denoting a factor of ten to the power of 12.
Definition: cv.hpp:14670
MS_ProteinScape_ProfoundProbability
MS_ProteinScape_ProfoundProbability
ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
Definition: cv.hpp:4896
MS_iTRAQ_reagent_119
MS_iTRAQ_reagent_119
iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
Definition: cv.hpp:8340
MS_MS_OBSOLETE
MS_MS_OBSOLETE
MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and t...
Definition: cv.hpp:1308
MS_multiple_stage_mass_spectrometry_spectrum
MS_multiple_stage_mass_spectrometry_spectrum
multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments d...
Definition: cv.hpp:2367
MS_6520A_Quadrupole_Time_of_Flight_LC_MS
MS_6520A_Quadrupole_Time_of_Flight_LC_MS
6520A Quadrupole Time-of-Flight LC/MS: The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid ...
Definition: cv.hpp:2700
MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE
MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modif...
Definition: cv.hpp:5577
MS______EZ_____P_
MS______EZ_____P_
(?<=[EZ])(?!P): Regular expression for V8-E.
Definition: cv.hpp:4431
UNIMOD_Hex_1_NeuAc_1_Pent_1_
UNIMOD_Hex_1_NeuAc_1_Pent_1_
Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
Definition: cv.hpp:12411
UNIMOD_Menadione_HQ
UNIMOD_Menadione_HQ
Menadione-HQ: Menadione hydroquinone derivative.
Definition: cv.hpp:10926
UO_square_centimeter
UO_square_centimeter
square centimeter: An area unit which is equal to one ten thousandth of a square meter or 10^[-4] m^[...
Definition: cv.hpp:14046
UNIMOD_dHex_1_Hex_3_HexNAc_5_
UNIMOD_dHex_1_Hex_3_HexNAc_5_
dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
Definition: cv.hpp:13368
MS_DSQ_II
MS_DSQ_II
DSQ II: Thermo Scientific DSQ II GC-MS.
Definition: cv.hpp:2595
MS_TOPP_MapAlignerPoseClustering
MS_TOPP_MapAlignerPoseClustering
TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clusteri...
Definition: cv.hpp:6894
MS_Bruker_FID_format
MS_Bruker_FID_format
Bruker FID format: Bruker FID file format.
Definition: cv.hpp:3174
MS_low_energy_collisions_OBSOLETE
MS_low_energy_collisions_OBSOLETE
low energy collisions: A collision between an ion and neutral species with translational energy appro...
Definition: cv.hpp:1872
MS_Q_Exactive_HF
MS_Q_Exactive_HF
Q Exactive HF: Thermo Scientific Q Exactive.
Definition: cv.hpp:8019
MS_thresholding
MS_thresholding
thresholding (low intensity data point removal): The removal of very low intensity data points that a...
Definition: cv.hpp:2436
UNIMOD_dHex_2_Hex_2_HexNAc_3_
UNIMOD_dHex_2_Hex_2_HexNAc_3_
dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
Definition: cv.hpp:13344
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
Definition: cv.hpp:5649
MS_H2O_neutral_loss_OBSOLETE
MS_H2O_neutral_loss_OBSOLETE
H2O neutral loss: Neutral loss of water.
Definition: cv.hpp:7815
MS_protein_level_global_FDR
MS_protein_level_global_FDR
protein-level global FDR: Estimation of the global false discovery rate of proteins.
Definition: cv.hpp:4071
UO_mile
UO_mile
mile: A length unit which is equal to 1,609.344 metres, or 8 furlongs.
Definition: cv.hpp:14844
MS_TopMG_use_TopFD_feature
MS_TopMG_use_TopFD_feature
TopMG:use TopFD feature: Proteoform identification using TopFD feature file.
Definition: cv.hpp:9258
MS_moving_wire
MS_moving_wire
moving wire: Continuous moving surface in the form of a wire which passes through an ion source carry...
Definition: cv.hpp:471
UO_millimolal
UO_millimolal
millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
Definition: cv.hpp:14010
UNIMOD_Asp__Trp
UNIMOD_Asp__Trp
Asp->Trp: Asp->Trp substitution.
Definition: cv.hpp:11487
MS_HyStar
MS_HyStar
HyStar: Bruker software for hyphenated experiments.
Definition: cv.hpp:3150
UNIMOD_Glu__Arg
UNIMOD_Glu__Arg
Glu->Arg: Glu->Arg substitution.
Definition: cv.hpp:11511
MS_peptide_group_ID
MS_peptide_group_ID
peptide group ID: Peptide group identifier for peptide-level stats.
Definition: cv.hpp:8010
MS_ProteomeDiscoverer_Minimal_peptide_probability
MS_ProteomeDiscoverer_Minimal_peptide_probability
ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to ...
Definition: cv.hpp:5592
UNIMOD_iodoTMT6plex
UNIMOD_iodoTMT6plex
iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:12189
UNIMOD_Lys
UNIMOD_Lys
Lys: Addition of lysine due to transpeptidation.
Definition: cv.hpp:12117
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a pe...
Definition: cv.hpp:5433
MS_TOF
MS_TOF
TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration...
Definition: cv.hpp:564
MS_LECO_software
MS_LECO_software
LECO software: LECO software for data acquisition and analysis.
Definition: cv.hpp:5808
UNIMOD_Label_15N_2_2H_9_
UNIMOD_Label_15N_2_2H_9_
Label:15N(2)2H(9): SILAC label.
Definition: cv.hpp:11172
UNIMOD_Label_2H_7_15N_4_
UNIMOD_Label_2H_7_15N_4_
Label:2H(7)15N(4): Label:2H(7)15N(4).
Definition: cv.hpp:12315
UNIMOD_Label_15N_4_
UNIMOD_Label_15N_4_
Label:15N(4): SILAC 15N(4).
Definition: cv.hpp:11076
MS_reaction
MS_reaction
reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z ...
Definition: cv.hpp:3432
UNIMOD_Hex_3_HexNAc_4_Sulf_1_
UNIMOD_Hex_3_HexNAc_4_Sulf_1_
Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
Definition: cv.hpp:12477
MS_TopMG_N_term_form
MS_TopMG_N_term_form
TopMG:N-term form: N-terminal forms of proteins allowed in TopMG searching.
Definition: cv.hpp:9231
UO_volume_percentage
UO_volume_percentage
volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL pe...
Definition: cv.hpp:14292
MS_collision_induced_dissociation
MS_collision_induced_dissociation
collision-induced dissociation: The dissociation of an ion after collisional excitation....
Definition: cv.hpp:747
MS_ACQUITY_UPLC_I_Class
MS_ACQUITY_UPLC_I_Class
ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
Definition: cv.hpp:5706
MS_pyrolysis_mass_spectrometry
MS_pyrolysis_mass_spectrometry
pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point...
Definition: cv.hpp:1341
MS_TopFD
MS_TopFD
TopFD: Top-down mass spectral feature detection.
Definition: cv.hpp:9129
MS_MAT253
MS_MAT253
MAT253: ThermoFinnigan MAT253 MS.
Definition: cv.hpp:882
MS_reflectron_off
MS_reflectron_off
reflectron off: Reflectron is off.
Definition: cv.hpp:633
MS_frag__b_ion
MS_frag__b_ion
frag: b ion: Fragmentation information, type of product: b ion.
Definition: cv.hpp:4098
UNIMOD_Hydroxycinnamyl
UNIMOD_Hydroxycinnamyl
Hydroxycinnamyl: Hydroxycinnamyl.
Definition: cv.hpp:10134
MS_MaxQuant_P_site_localization_probability
MS_MaxQuant_P_site_localization_probability
MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant sof...
Definition: cv.hpp:6375
MS_secondary_ionization
MS_secondary_ionization
secondary ionization: The process in which ions are ejected from a sample surface as a result of bomb...
Definition: cv.hpp:1779
MS_sampled_noise_m_z_array
MS_sampled_noise_m_z_array
sampled noise m/z array: A data array of parallel, independent m/z values for a sampling of noise acr...
Definition: cv.hpp:8649
UNIMOD_Decanoyl
UNIMOD_Decanoyl
Decanoyl: Lipid.
Definition: cv.hpp:10245
MS_ProteomeDiscoverer_min_peptide_length
MS_ProteomeDiscoverer_min_peptide_length
ProteomeDiscoverer:min peptide length: Minimum peptide length.
Definition: cv.hpp:7416
UNIMOD_Gln__Ala
UNIMOD_Gln__Ala
Gln->Ala: Gln->Ala substitution.
Definition: cv.hpp:11784
MS_ITQ_900
MS_ITQ_900
ITQ 900: Thermo Scientific ITQ 900 GC-MS.
Definition: cv.hpp:2580
UO_day
UO_day
day: A time unit which is equal to 24 hours.
Definition: cv.hpp:13902
UNIMOD_Val__Tyr
UNIMOD_Val__Tyr
Val->Tyr: Val->Tyr substitution.
Definition: cv.hpp:11922
UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_
UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_
Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
Definition: cv.hpp:12741
MS_ICAT_heavy_reagent
MS_ICAT_heavy_reagent
ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
Definition: cv.hpp:8265
MS_MRMPilot_Software
MS_MRMPilot_Software
MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2667
UO_microsievert
UO_microsievert
microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
Definition: cv.hpp:14217
UNIMOD_ICAT_D
UNIMOD_ICAT_D
ICAT-D: Applied Biosystems original ICAT(TM) d0.
Definition: cv.hpp:9408
MS_MAT95XP
MS_MAT95XP
MAT95XP: ThermoFinnigan MAT95XP MS.
Definition: cv.hpp:891
MS_fast_atom_bombardment_ionization
MS_fast_atom_bombardment_ionization
fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam ...
Definition: cv.hpp:513
MS_IsobariQ
MS_IsobariQ
IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
Definition: cv.hpp:7077
MS_TOPP_PrecursorMassCorrector
MS_TOPP_PrecursorMassCorrector
TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
Definition: cv.hpp:6927
MS_number_of_peaks_used
MS_number_of_peaks_used
number of peaks used: The number of peaks from the original peak list that are used to calculate the ...
Definition: cv.hpp:3828
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_
Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
Definition: cv.hpp:13212
UNIMOD_glyoxalAGE
UNIMOD_glyoxalAGE
glyoxalAGE: Glyoxal-derived AGE.
Definition: cv.hpp:13587
UNIMOD_Cys__Ala
UNIMOD_Cys__Ala
Cys->Ala: Cys->Ala substitution.
Definition: cv.hpp:11421
MS_search_engine_specific_score
MS_search_engine_specific_score
search engine specific score: Search engine specific scores.
Definition: cv.hpp:3918
UNIMOD_IGBP_13C_2_
UNIMOD_IGBP_13C_2_
IGBP:13C(2): Heavy IDBEST tag for quantitation.
Definition: cv.hpp:10305
MS_absorption_spectrum
MS_absorption_spectrum
absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms ...
Definition: cv.hpp:3114
MS_LTQ_Orbitrap
MS_LTQ_Orbitrap
LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
Definition: cv.hpp:1932
MS_XPRESS
MS_XPRESS
XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled...
Definition: cv.hpp:7320
UNIMOD_Gly__Phe
UNIMOD_Gly__Phe
Gly->Phe: Gly->Phe substitution.
Definition: cv.hpp:11565
MS_mz5_format
MS_mz5_format
mz5 format: mz5 file format, modelled after mzML.
Definition: cv.hpp:6057
UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_
UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
Definition: cv.hpp:13287
UO_kilobasepair
UO_kilobasepair
kilobasepair: A unit equal to one thousand base pairs.
Definition: cv.hpp:14781
UNIMOD_Tyr__Xle
UNIMOD_Tyr__Xle
Tyr->Xle: Tyr->Leu/Ile substitution.
Definition: cv.hpp:11997
UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_
UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_
dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
Definition: cv.hpp:12444
UNIMOD_Xle__Ala
UNIMOD_Xle__Ala
Xle->Ala: Leu/Ile->Ala substitution.
Definition: cv.hpp:11628
MS_Paragon__bias_correction
MS_Paragon__bias_correction
Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invok...
Definition: cv.hpp:7740
UO_ug_disk
UO_ug_disk
ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/conta...
Definition: cv.hpp:14628
MS_label_free_proteingroup_level_quantitation
MS_label_free_proteingroup_level_quantitation
label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
Definition: cv.hpp:6510
MS_IMS_OBSOLETE
MS_IMS_OBSOLETE
IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer ...
Definition: cv.hpp:1263
MS_TopMG_spectral_E_value
MS_TopMG_spectral_E_value
TopMG:spectral E-value: TopMG spectrum-level E-value.
Definition: cv.hpp:9273
MS_product_ion_series_ordinal
MS_product_ion_series_ordinal
product ion series ordinal: The ordinal of the fragment within a specified ion series....
Definition: cv.hpp:3414
UNIMOD_Hex_1_HexNAc_1_Sulf_1_
UNIMOD_Hex_1_HexNAc_1_Sulf_1_
Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
Definition: cv.hpp:12375
UNIMOD_Cys__SecNEM_2H_5_
UNIMOD_Cys__SecNEM_2H_5_
Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:11361
MS_fragment_ion_m_z
MS_fragment_ion_m_z
fragment ion m/z (product ion m/z): The m/z of the product ion.
Definition: cv.hpp:4104
UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_
UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_
dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
Definition: cv.hpp:13062
UNIMOD_Label_13C_6_15N_2__GG
UNIMOD_Label_13C_6_15N_2__GG
Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
Definition: cv.hpp:11025
UNIMOD_SulfoGMBS
UNIMOD_SulfoGMBS
SulfoGMBS: High molecular absorption label for proteins.
Definition: cv.hpp:11166
UNIMOD_Gln__Phe
UNIMOD_Gln__Phe
Gln->Phe: Gln->Phe substitution.
Definition: cv.hpp:11793
UNIMOD_Pro__Arg
UNIMOD_Pro__Arg
Pro->Arg: Pro->Arg substitution.
Definition: cv.hpp:10638
MS_confident_peptide_qualification
MS_confident_peptide_qualification
confident peptide qualification: The point of this entry is to define what is meant by confident for ...
Definition: cv.hpp:3756
UNIMOD_Asp__Met
UNIMOD_Asp__Met
Asp->Met: Asp->Met substitution.
Definition: cv.hpp:11469
MS_sequence_sub_set_protein
MS_sequence_sub_set_protein
sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protei...
Definition: cv.hpp:5202
UNIMOD_LRGG
UNIMOD_LRGG
LRGG: Ubiquitination.
Definition: cv.hpp:10383
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the M...
Definition: cv.hpp:5364
UO_kelvin
UO_kelvin
kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic...
Definition: cv.hpp:13839
MS_sum_of_spectra
MS_sum_of_spectra
sum of spectra: Spectra Sum.
Definition: cv.hpp:2322
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_
Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:13185
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5562
MS_charge_transfer_reaction_OBSOLETE
MS_charge_transfer_reaction_OBSOLETE
charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the c...
Definition: cv.hpp:1824
MS_wolf
MS_wolf
wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML....
Definition: cv.hpp:2223
MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE
MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modif...
Definition: cv.hpp:5574
MS_protein_inference_confidence_category
MS_protein_inference_confidence_category
protein inference confidence category: Confidence category of inferred protein (conclusive,...
Definition: cv.hpp:5214
MS_autoflex
MS_autoflex
autoflex: Bruker Daltonics' autoflex: MALDI TOF.
Definition: cv.hpp:5064
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
Definition: cv.hpp:5658
MS_MassLynx
MS_MassLynx
MassLynx: Micromass software for data acquisition and analysis.
Definition: cv.hpp:2208
UNIMOD_Met__Glu
UNIMOD_Met__Glu
Met->Glu: Met->Glu substitution.
Definition: cv.hpp:11688
MS_photodiode_array_detector
MS_photodiode_array_detector
photodiode array detector: An array detector used to record spectra in the ultraviolet and visible re...
Definition: cv.hpp:2526
MS_Quistor
MS_Quistor
Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensi...
Definition: cv.hpp:555
MS_autoflex_II
MS_autoflex_II
autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
Definition: cv.hpp:810
MS_nominal_mass_OBSOLETE
MS_nominal_mass_OBSOLETE
nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope o...
Definition: cv.hpp:1086
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12900
MS_autoflex_III_smartbeam
MS_autoflex_III_smartbeam
autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
Definition: cv.hpp:2757
MS_chromatogram_type
MS_chromatogram_type
chromatogram type: Broad category or type of a chromatogram.
Definition: cv.hpp:2547
UNIMOD_Cys__Trp
UNIMOD_Cys__Trp
Cys->Trp: Cys->Trp substitution.
Definition: cv.hpp:10425
UNIMOD_Hex_1_HexNAc_1_NeuGc_4_
UNIMOD_Hex_1_HexNAc_1_NeuGc_4_
Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
Definition: cv.hpp:13239
UO_gram_per_liter
UO_gram_per_liter
gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volum...
Definition: cv.hpp:14322
UNIMOD_Met__Trp
UNIMOD_Met__Trp
Met->Trp: Met->Trp substitution.
Definition: cv.hpp:11712
UO_deca
UO_deca
deca: A prefix in the metric system denoting a factor of ten.
Definition: cv.hpp:14682
MS_6540_Q_TOF_LC_MS
MS_6540_Q_TOF_LC_MS
6540 Q-TOF LC/MS: The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8787
MS_ProteomeDiscoverer_Default_FDR_calculator
MS_ProteomeDiscoverer_Default_FDR_calculator
ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (...
Definition: cv.hpp:7143
MS_ProteomeDiscoverer_Number_of_input1_spectra
MS_ProteomeDiscoverer_Number_of_input1_spectra
ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
Definition: cv.hpp:5598
MS_MaxQuant_PTM_Score
MS_MaxQuant_PTM_Score
MaxQuant:PTM Score: The PTM score from MaxQuant software.
Definition: cv.hpp:6366
MS_ProteomeDiscoverer_Min_Precursor_Mass
MS_ProteomeDiscoverer_Min_Precursor_Mass
ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
Definition: cv.hpp:5238
UNIMOD_Met__Aha
UNIMOD_Met__Aha
Met->Aha: Methionine replacement by azido homoalanine.
Definition: cv.hpp:11073
MS_PeptideShaker_peptide_confidence_type
MS_PeptideShaker_peptide_confidence_type
PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide i...
Definition: cv.hpp:8076
UO_megavolt
UO_megavolt
megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
Definition: cv.hpp:14553
MS_PSM_level_search_engine_specific_statistic
MS_PSM_level_search_engine_specific_statistic
PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.
Definition: cv.hpp:3888
MS_peptide_sequence_level_identification_statistic
MS_peptide_sequence_level_identification_statistic
peptide sequence-level identification statistic: Identification confidence metric for a peptide.
Definition: cv.hpp:3735
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant...
Definition: cv.hpp:1140
UNIMOD_Hex_5_HexNAc_2_
UNIMOD_Hex_5_HexNAc_2_
Hex(5)HexNAc(2): N-linked glycan core.
Definition: cv.hpp:9639
UNIMOD_FP_Biotin
UNIMOD_FP_Biotin
FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
Definition: cv.hpp:9954
MS_SEQUEST_SequenceHeaderFilter
MS_SEQUEST_SequenceHeaderFilter
SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
Definition: cv.hpp:3582
MS_sum_of_MatchedFeature_values_OBSOLETE
MS_sum_of_MatchedFeature_values_OBSOLETE
sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quanti...
Definition: cv.hpp:5961
MS_Additional_associated_raw_file_URI
MS_Additional_associated_raw_file_URI
Additional associated raw file URI: Additional URI of one raw data file associated to the PRIDE exper...
Definition: cv.hpp:9000
MS_TMT_quantitation_analysis
MS_TMT_quantitation_analysis
TMT quantitation analysis: Quantitation analysis using the Thermo Fisher amine-reactive tandem mass t...
Definition: cv.hpp:6471
MS_TSQ_Vantage
MS_TSQ_Vantage
TSQ Vantage: TSQ Vantage.
Definition: cv.hpp:4935
UO_picogram
UO_picogram
picogram: A mass unit which is equal to 10^[-12] g.
Definition: cv.hpp:13878
MS_TagRecon_MVH
MS_TagRecon_MVH
TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5175
MS_decoy_DB_from_IPI_mouse_OBSOLETE
MS_decoy_DB_from_IPI_mouse_OBSOLETE
decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
Definition: cv.hpp:4281
UNIMOD_Tyr__Gly
UNIMOD_Tyr__Gly
Tyr->Gly: Tyr->Gly substitution.
Definition: cv.hpp:11970
MS_molecule_taxonomy
MS_molecule_taxonomy
molecule taxonomy: The taxonomy of the resultant molecule from the search.
Definition: cv.hpp:3726
MS_iProphet
MS_iProphet
iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines ...
Definition: cv.hpp:7314
UNIMOD_Ammonia_loss
UNIMOD_Ammonia_loss
Ammonia-loss: Loss of ammonia.
Definition: cv.hpp:10080
UO_year
UO_year
year: A time unit which is equal to 12 months which in science is taken to be equal to 365....
Definition: cv.hpp:13911
UNIMOD_2HPG
UNIMOD_2HPG
2HPG: Bis(hydroxphenylglyoxal) arginine.
Definition: cv.hpp:9738
MS_matrix_application_type
MS_matrix_application_type
matrix application type: Describes the technique how the matrix is put on the sample target.
Definition: cv.hpp:3195
MS_precursor_recalculation
MS_precursor_recalculation
precursor recalculation: A process that recalculates existing precursor selected ions with one or mor...
Definition: cv.hpp:3012
UNIMOD_Hex_5_HexNAc_5_
UNIMOD_Hex_5_HexNAc_5_
Hex(5)HexNAc(5): Hex(5) HexNAc(5).
Definition: cv.hpp:13383
MS_TMT_reagent_128
MS_TMT_reagent_128
TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
Definition: cv.hpp:8307
MS_PSM_level_local_FDR
MS_PSM_level_local_FDR
PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
Definition: cv.hpp:7503
UNIMOD_Asn__Trp
UNIMOD_Asn__Trp
Asn->Trp: Asn->Trp substitution.
Definition: cv.hpp:11748
MS_charge_state_calculation
MS_charge_state_calculation
charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by...
Definition: cv.hpp:3006
MS_peptide_end_on_chromosome
MS_peptide_end_on_chromosome
peptide end on chromosome: The overall end position on the chromosome to which a peptide has been map...
Definition: cv.hpp:8376
MS_constant_neutral_gain_spectrum
MS_constant_neutral_gain_spectrum
constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain...
Definition: cv.hpp:1539
MS_MALDI_Synapt_HDMS
MS_MALDI_Synapt_HDMS
MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
Definition: cv.hpp:5739
MS_MetaMorpheus_protein_score
MS_MetaMorpheus_protein_score
MetaMorpheus:protein score: MetaMorpheus score for protein groups.
Definition: cv.hpp:8907
MS_Mascot_expectation_value
MS_Mascot_expectation_value
Mascot:expectation value: The Mascot result 'expectation value'.
Definition: cv.hpp:3975
MS_____K____P_
MS_____K____P_
(?<=K)(?!P): Regular expression for Lys-C.
Definition: cv.hpp:4413
UNIMOD_Glucosylgalactosyl
UNIMOD_Glucosylgalactosyl
Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
Definition: cv.hpp:10101
MS_PIA_protein_inference_filter
MS_PIA_protein_inference_filter
PIA:protein inference filter: A filter used by PIA for the protein inference.
Definition: cv.hpp:7638
MS_chemical_compound_formula
MS_chemical_compound_formula
chemical compound formula: A combination of symbols used to express the chemical composition of a com...
Definition: cv.hpp:3294
MS_aromatic_ion_OBSOLETE
MS_aromatic_ion_OBSOLETE
aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer ...
Definition: cv.hpp:1635
MS_msalign_format
MS_msalign_format
msalign format: msalign file format.
Definition: cv.hpp:9120
MS_autoflex_TOF_TOF
MS_autoflex_TOF_TOF
autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
Definition: cv.hpp:813
UNIMOD_Carboxyethyl
UNIMOD_Carboxyethyl
Carboxyethyl: Carboxyethyl.
Definition: cv.hpp:10065
MS_surface_ionization
MS_surface_ionization
surface ionization: The ionization of a neutral species when it interacts with a solid surface with a...
Definition: cv.hpp:1791
MS_TMT_reagent
MS_TMT_reagent
TMT reagent: Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isoba...
Definition: cv.hpp:8298
MS_inlet_type
MS_inlet_type
inlet type: The nature of the sample inlet.
Definition: cv.hpp:282
MS_PIA_filter
MS_PIA_filter
PIA:filter: A filter used for the report generation.
Definition: cv.hpp:7650
pwiz::cv::CVTermInfo::otherRelations
std::multimap< std::string, CVID > otherRelations
Definition: cv.hpp:14954
MS_Bruker_Daltonics_maXis_series
MS_Bruker_Daltonics_maXis_series
Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
Definition: cv.hpp:5046
MS_Amanda
MS_Amanda
Amanda: Amanda scoring system for PSM identification.
Definition: cv.hpp:7458
MS_Progenesis_feature_intensity
MS_Progenesis_feature_intensity
Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
Definition: cv.hpp:6102
MS_param__immonium_ion
MS_param__immonium_ion
param: immonium ion: Parameter information, type of product: immonium ion.
Definition: cv.hpp:4203
MS_quantification_object_attribute
MS_quantification_object_attribute
quantification object attribute: Attributes describing the details of an object relevant for reportin...
Definition: cv.hpp:5832
MS_desorption_ionization
MS_desorption_ionization
desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporiza...
Definition: cv.hpp:1176
MS_mzidLib_Mzidentml2Csv
MS_mzidLib_Mzidentml2Csv
mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
Definition: cv.hpp:7182
MS_SSMS_OBSOLETE
MS_SSMS_OBSOLETE
SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
Definition: cv.hpp:1398
MS_Shimadzu_Biotech_nativeID_format
MS_Shimadzu_Biotech_nativeID_format
Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInt...
Definition: cv.hpp:3495
UO_furlong
UO_furlong
furlong: A length unit which is equal to 20,116.8 metres, 660 feet, or 10 chains.
Definition: cv.hpp:14841
MS_TOPP_FeatureFinderRaw
MS_TOPP_FeatureFinderRaw
TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
Definition: cv.hpp:6948
MS_ProteinExtractor_UseProteinSolver
MS_ProteinExtractor_UseProteinSolver
ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation o...
Definition: cv.hpp:4716
MS_below_precursor_intensity_dominance_charge_state_calculation
MS_below_precursor_intensity_dominance_charge_state_calculation
below precursor intensity dominance charge state calculation: Infers charge state as single or ambigu...
Definition: cv.hpp:3009
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr para...
Definition: cv.hpp:5544
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_
dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
Definition: cv.hpp:13041
MS_MultiQuant
MS_MultiQuant
MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
Definition: cv.hpp:2691
MS_lowest_observed_m_z
MS_lowest_observed_m_z
lowest observed m/z: Lowest m/z value observed in the m/z array.
Definition: cv.hpp:2190
MS_Progenesis_protein_normalised_abundance
MS_Progenesis_protein_normalised_abundance
Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by ...
Definition: cv.hpp:6084
MS_mean_charge_array
MS_mean_charge_array
mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean...
Definition: cv.hpp:7884
MS_MSPathFinder_PepQValue
MS_MSPathFinder_PepQValue
MSPathFinder:PepQValue: MSPathFinder peptide-level Q-value.
Definition: cv.hpp:8592
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more...
Definition: cv.hpp:5508
MS_Q_Tof_Ultima
MS_Q_Tof_Ultima
Q-Tof Ultima: Waters oa-ToF based Q-Tof Ultima.
Definition: cv.hpp:933
UNIMOD_MDCC
UNIMOD_MDCC
MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
Definition: cv.hpp:11049
MS_TEMPUS_TOF
MS_TEMPUS_TOF
TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
Definition: cv.hpp:954
MS_TOPP_ProteinQuantifier
MS_TOPP_ProteinQuantifier
TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
Definition: cv.hpp:6960
MS_open_split
MS_open_split
open split: A division of flowing stream of liquid into two streams.
Definition: cv.hpp:474
MS_ProteomeDiscoverer_1__Static_Terminal_Modification
MS_ProteomeDiscoverer_1__Static_Terminal_Modification
ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational ...
Definition: cv.hpp:8016
UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_
UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
Definition: cv.hpp:13065
UNIMOD_Ser__Lys
UNIMOD_Ser__Lys
Ser->Lys: Ser->Lys substitution.
Definition: cv.hpp:11850
UNIMOD_Argbiotinhydrazide
UNIMOD_Argbiotinhydrazide
Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
Definition: cv.hpp:9984
MS_param__y_ion_H2O_DEPRECATED
MS_param__y_ion_H2O_DEPRECATED
param: y ion-H2O DEPRECATED:
Definition: cv.hpp:3915
MS_embl_em
MS_embl_em
embl em: EMBL entry format.
Definition: cv.hpp:4464
UO_millisecond
UO_millisecond
millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
Definition: cv.hpp:13887
UNIMOD_Label_13C_9_
UNIMOD_Label_13C_9_
Label:13C(9): 13C(9) Silac label.
Definition: cv.hpp:9729
MS_SEQUEST_selectCV
MS_SEQUEST_selectCV
SEQUEST:selectCV: SEQUEST Select Input Parameters.
Definition: cv.hpp:3843
MS_MaxQuant_PTM_Score_threshold
MS_MaxQuant_PTM_Score_threshold
MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
Definition: cv.hpp:8142
MS_TopMG_proteoform_graph_gap_size
MS_TopMG_proteoform_graph_gap_size
TopMG:proteoform graph gap size: Gap size in constructing proteoform graph.
Definition: cv.hpp:9261
UNIMOD_dHex_1_Hex_2_HexNAc_4_
UNIMOD_dHex_1_Hex_2_HexNAc_4_
dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
Definition: cv.hpp:13074
UNIMOD_lapachenole
UNIMOD_lapachenole
lapachenole: Lapachenole photochemically added to cysteine.
Definition: cv.hpp:10932
MS_DB_composition_target_decoy
MS_DB_composition_target_decoy
DB composition target+decoy: Decoy database composition: database contains original (target) and deco...
Definition: cv.hpp:4026
MS_second_OBSOLETE
MS_second_OBSOLETE
second: Acquisition time in seconds.
Definition: cv.hpp:381
UNIMOD_PhosphoUridine
UNIMOD_PhosphoUridine
PhosphoUridine: Uridine phosphodiester.
Definition: cv.hpp:10164
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer...
Definition: cv.hpp:5676
UNIMOD_dHex_1_Hex_2_HexNAc_3_
UNIMOD_dHex_1_Hex_2_HexNAc_3_
dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
Definition: cv.hpp:13329
UNIMOD_His__Met
UNIMOD_His__Met
His->Met: His->Met substitution.
Definition: cv.hpp:11613
MS_target_inclusion_exclusion_priority
MS_target_inclusion_exclusion_priority
target inclusion exclusion priority: A priority setting specifying whether included or excluded targe...
Definition: cv.hpp:3465
MS_probability_for_proteins
MS_probability_for_proteins
probability for proteins: Probability that a specific protein sequence has been correctly identified ...
Definition: cv.hpp:7551
MS_____K_
MS_____K_
(?<=K): Regular expression for Lys-C/P.
Definition: cv.hpp:4416
UNIMOD_His__Glu
UNIMOD_His__Glu
His->Glu: His->Glu substitution.
Definition: cv.hpp:11601
MS_Comet_total_ions
MS_Comet_total_ions
Comet:total ions: The Comet result 'Total Ions'.
Definition: cv.hpp:7224
UNIMOD_UgiJoullieProGly
UNIMOD_UgiJoullieProGly
UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
Definition: cv.hpp:12072
MS_error_on_protein_ratio
MS_error_on_protein_ratio
error on protein ratio: Error on protein ratio.
Definition: cv.hpp:3864
MS_negative_ion_mode_OBSOLETE
MS_negative_ion_mode_OBSOLETE
negative ion mode: OBSOLETE.
Definition: cv.hpp:525
MS_ProteomeDiscoverer_max_peptide_length
MS_ProteomeDiscoverer_max_peptide_length
ProteomeDiscoverer:max peptide length: Maximum peptide length.
Definition: cv.hpp:7419
MS_precursor_activation_attribute
MS_precursor_activation_attribute
precursor activation attribute: Precursor Activation Attribute.
Definition: cv.hpp:2136
UO_watt_hour
UO_watt_hour
watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt ...
Definition: cv.hpp:14466
MS_TOPP_ConsensusID
MS_TOPP_ConsensusID
TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identif...
Definition: cv.hpp:7011
MS_SEQUEST_ProcessAll
MS_SEQUEST_ProcessAll
SEQUEST:ProcessAll:
Definition: cv.hpp:3744
MS_TOPP_SpectraFilterNLargest
MS_TOPP_SpectraFilterNLargest
TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
Definition: cv.hpp:6867
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_
dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
Definition: cv.hpp:12507
MS_modification_parameters
MS_modification_parameters
modification parameters: Modification parameters for the search engine run.
Definition: cv.hpp:3648
MS_PerSeptive_PKS_format
MS_PerSeptive_PKS_format
PerSeptive PKS format: PerSeptive peak list file format.
Definition: cv.hpp:4164
MS_mass_number_OBSOLETE
MS_mass_number_OBSOLETE
mass number: The sum of the protons and neutrons in an atom, molecule or ion.
Definition: cv.hpp:1062
MS_preset_scan_configuration
MS_preset_scan_configuration
preset scan configuration: A user-defined scan configuration that specifies the instrumental settings...
Definition: cv.hpp:2511
MS_MSQuant_PTM_score_threshold
MS_MSQuant_PTM_score_threshold
MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
Definition: cv.hpp:8139
UNIMOD_Furan
UNIMOD_Furan
Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
Definition: cv.hpp:12063
MS_completion_time
MS_completion_time
completion time: The time that a data processing action was finished.
Definition: cv.hpp:2910
UO_micro
UO_micro
micro: A prefix in the metric system denoting a factor of 10 to the power of -6.
Definition: cv.hpp:14694
UO_watt_per_steradian
UO_watt_per_steradian
watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second ...
Definition: cv.hpp:14283
UNIMOD_Label_13C_1_2H_3_
UNIMOD_Label_13C_1_2H_3_
Label:13C(1)2H(3): SILAC.
Definition: cv.hpp:11022
MS_quadrupole
MS_quadrupole
quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of...
Definition: cv.hpp:543
UNIMOD_Hex_4_HexNAc_1_
UNIMOD_Hex_4_HexNAc_1_
Hex(4)HexNAc(1): Hex(4) HexNAc.
Definition: cv.hpp:12873
UNIMOD_Cy3_maleimide
UNIMOD_Cy3_maleimide
Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
Definition: cv.hpp:12198
MS_Profound_z_value
MS_Profound_z_value
Profound:z value: The Profound z value.
Definition: cv.hpp:4899
UO_katal_per_liter
UO_katal_per_liter
katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a ca...
Definition: cv.hpp:14409
UNIMOD_Glutathione
UNIMOD_Glutathione
Glutathione: Glutathione disulfide.
Definition: cv.hpp:9507
MS_image_current_detector
MS_image_current_detector
image current detector (inductive detector): Inductive detector.
Definition: cv.hpp:2541
UNIMOD_Xlink_BuUrBu_111_
UNIMOD_Xlink_BuUrBu_111_
Xlink:BuUrBu[111]: BuUr fragment of BuUrBu crosslinker.
Definition: cv.hpp:13527
UO_pascal_second
UO_pascal_second
pascal second: A viscosity unit which is equal to one pascale per second.
Definition: cv.hpp:14568
MS_ProteinExtractor_ProteinSolverUniqueScore
MS_ProteinExtractor_ProteinSolverUniqueScore
ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one pe...
Definition: cv.hpp:4722
MS_charge_inversion_reaction_OBSOLETE
MS_charge_inversion_reaction_OBSOLETE
charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the produ...
Definition: cv.hpp:1815
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single i...
Definition: cv.hpp:5442
MS_calibration_spectrum
MS_calibration_spectrum
calibration spectrum: A spectrum derived from a special calibration source, rather than from the prim...
Definition: cv.hpp:3492
MS_non_standard_data_array
MS_non_standard_data_array
non-standard data array: A data array that contains data not covered by any other term in this group....
Definition: cv.hpp:3045
MS_protein_level_statistical_threshold
MS_protein_level_statistical_threshold
protein-level statistical threshold: Estimated statistical threshold at protein-level.
Definition: cv.hpp:7905
MS_peptide_sequence_level_global_FNR
MS_peptide_sequence_level_global_FNR
peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides...
Definition: cv.hpp:7836
MS_sequence_level_spectral_count
MS_sequence_level_spectral_count
sequence-level spectral count: The number of MS2 spectra identified for a raw peptide sequence withou...
Definition: cv.hpp:5940
MS_group_PSMs_by_sequence_with_modifications_and_charge
MS_group_PSMs_by_sequence_with_modifications_and_charge
group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with ta...
Definition: cv.hpp:7944
MS_TOPP_ProteinInference
MS_TOPP_ProteinInference
TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
Definition: cv.hpp:7056
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_
dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
Definition: cv.hpp:12336
MS_MSPathFinder_QValue
MS_MSPathFinder_QValue
MSPathFinder:QValue: MSPathFinder Q-value.
Definition: cv.hpp:8589
MS_LipidHunter
MS_LipidHunter
LipidHunter: Software for identification of phospholipids by high-throughput processing of LC-MS and ...
Definition: cv.hpp:9324
MS_HCTplus
MS_HCTplus
HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:849
UNIMOD_Bacillosamine
UNIMOD_Bacillosamine
Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
Definition: cv.hpp:11109
MS_Paragon__cysteine_alkylation
MS_Paragon__cysteine_alkylation
Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation ag...
Definition: cv.hpp:7719
MS_TOPP_FeatureFinderIsotopeWavelet
MS_TOPP_FeatureFinderIsotopeWavelet
TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a ...
Definition: cv.hpp:6951
MS_XCMS_area
MS_XCMS_area
XCMS:area: Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by...
Definition: cv.hpp:8919
MS_z
MS_z
z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
Definition: cv.hpp:399
UO_colony_forming_unit_per_volume
UO_colony_forming_unit_per_volume
colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a...
Definition: cv.hpp:14433
MS_Associated_file_URI
MS_Associated_file_URI
Associated file URI: URI of one external file associated to the PRIDE experiment (maybe through a PX ...
Definition: cv.hpp:8958
MS_esquire_6000
MS_esquire_6000
esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray,...
Definition: cv.hpp:837
MS_ProteomeDiscoverer_Number_of_input2_spectra
MS_ProteomeDiscoverer_Number_of_input2_spectra
ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
Definition: cv.hpp:5601
UO_minute
UO_minute
minute: A time unit which is equal to 60 seconds.
Definition: cv.hpp:13896
MS_SEQUEST_sortCV
MS_SEQUEST_sortCV
SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
Definition: cv.hpp:3612
MS_isoelectric_point
MS_isoelectric_point
isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric f...
Definition: cv.hpp:3282
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overt...
Definition: cv.hpp:5295
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
Definition: cv.hpp:12936
UNIMOD_Dibromo
UNIMOD_Dibromo
Dibromo: Dibromo.
Definition: cv.hpp:10380
MS_Triple_Quad_4500
MS_Triple_Quad_4500
Triple Quad 4500: SCIEX Triple Quad 4500.
Definition: cv.hpp:8229
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:13143
UO_volumetric_flow_rate_unit
UO_volumetric_flow_rate_unit
volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes thr...
Definition: cv.hpp:14607
MS_Agilent_MassHunter_nativeID_format
MS_Agilent_MassHunter_nativeID_format
Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
Definition: cv.hpp:4929
MS_TSQ_Quantum_Ultra_AM
MS_TSQ_Quantum_Ultra_AM
TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
Definition: cv.hpp:2898
MS_vendor_OBSOLETE
MS_vendor_OBSOLETE
vendor: Name of instrument vendor.
Definition: cv.hpp:354
MS_unspecific_cleavage
MS_unspecific_cleavage
unspecific cleavage: Unspecific cleavage.
Definition: cv.hpp:6291
MS______BDEZ_____P_
MS______BDEZ_____P_
(?<=[BDEZ])(?!P): Regular expression for V8-DE.
Definition: cv.hpp:4428
UNIMOD_Pent_2_
UNIMOD_Pent_2_
Pent(2): Pent(2).
Definition: cv.hpp:13632
MS_field_desorption
MS_field_desorption
field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the...
Definition: cv.hpp:1236
MS_feature_list_attribute
MS_feature_list_attribute
feature list attribute: Attribute describing a feature list.
Definition: cv.hpp:5889
MS_database_IPI_arabidopsis
MS_database_IPI_arabidopsis
database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
Definition: cv.hpp:4272
MS_Progenesis_protein_raw_abundance
MS_Progenesis_protein_raw_abundance
Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-...
Definition: cv.hpp:6090
MS_MyriMatch_MVH
MS_MyriMatch_MVH
MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into severa...
Definition: cv.hpp:5169
MS_c_terminal_flanking_residue
MS_c_terminal_flanking_residue
c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it ...
Definition: cv.hpp:3798
UNIMOD_QEQTGG
UNIMOD_QEQTGG
QEQTGG: SUMOylation by SUMO-1.
Definition: cv.hpp:11031
UNIMOD_Arg__Orn
UNIMOD_Arg__Orn
Arg->Orn: Ornithine from Arginine.
Definition: cv.hpp:10050
UNIMOD_Gluratylation
UNIMOD_Gluratylation
Gluratylation: Glutarylation.
Definition: cv.hpp:13482
MS_XCMS
MS_XCMS
XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
Definition: cv.hpp:5148
MS_ProteinExtractor_UsePhenyx
MS_ProteinExtractor_UsePhenyx
ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinE...
Definition: cv.hpp:4728
UNIMOD_4_ONE
UNIMOD_4_ONE
4-ONE: 4-Oxononenal (ONE).
Definition: cv.hpp:10833
UNIMOD_Biotin_tyramide
UNIMOD_Biotin_tyramide
Biotin-tyramide: Biotin-Phenol.
Definition: cv.hpp:13437
MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained
MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained
ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectr...
Definition: cv.hpp:7146
MS_ProteoWizard_msconvert
MS_ProteoWizard_msconvert
ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats...
Definition: cv.hpp:7062
MS_Reference
MS_Reference
Reference: Literature reference associated with one dataset (including the authors,...
Definition: cv.hpp:9021
MS_error_on_absolute_quantity
MS_error_on_absolute_quantity
error on absolute quantity: Error on absolute quantity.
Definition: cv.hpp:3873
MS_molecular_ion_OBSOLETE
MS_molecular_ion_OBSOLETE
molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the ad...
Definition: cv.hpp:1680
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measur...
Definition: cv.hpp:4824
MS_SCiLS_Lab
MS_SCiLS_Lab
SCiLS Lab: SCiLS Lab software.
Definition: cv.hpp:7602
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
Definition: cv.hpp:9690
MS_peptide_passes_threshold
MS_peptide_passes_threshold
peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the thresho...
Definition: cv.hpp:7950
UNIMOD_Propionyl_13C_3_
UNIMOD_Propionyl_13C_3_
Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
Definition: cv.hpp:9516
MS_Pegasus_HRT
MS_Pegasus_HRT
Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:5817
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_
Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
Definition: cv.hpp:13191
MS_target_list
MS_target_list
target list: A list of peptides or compounds and their expected m/z coordinates that can be used to c...
Definition: cv.hpp:3462
UNIMOD_Cholesterol
UNIMOD_Cholesterol
Cholesterol: Cholesterol ester.
Definition: cv.hpp:10200
MS_MALDI_Synapt_G2_HDMS
MS_MALDI_Synapt_G2_HDMS
MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
Definition: cv.hpp:5727
MS_progeny_ion_OBSOLETE
MS_progeny_ion_OBSOLETE
progeny ion: A charged product of a series of consecutive reactions that includes product ions,...
Definition: cv.hpp:1602
UNIMOD_Hex_3_HexNAc_3_NeuAc_3_
UNIMOD_Hex_3_HexNAc_3_NeuAc_3_
Hex(3)HexNAc(3)NeuAc(3): Hex(3) HexNAc(3) NeuAc(3).
Definition: cv.hpp:13746
MS_NA_sequence
MS_NA_sequence
NA sequence: The sequence is a nucleic acid sequence.
Definition: cv.hpp:4437
MS_polarity_OBSOLETE
MS_polarity_OBSOLETE
polarity: Terms to describe the polarity setting of the instrument.
Definition: cv.hpp:375
MS_transition_validation_attribute
MS_transition_validation_attribute
transition validation attribute: Attributes of the quality of a transition that affect its selection ...
Definition: cv.hpp:6060
MS_mzidLib_ProteoGrouper
MS_mzidLib_ProteoGrouper
mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
Definition: cv.hpp:7170
MS_study_variable_attribute
MS_study_variable_attribute
study variable attribute: Attribute describing a study variable.
Definition: cv.hpp:5835
UNIMOD_Aspartylurea
UNIMOD_Aspartylurea
Aspartylurea: Aspartylurea.
Definition: cv.hpp:13596
MS_GENOLINK
MS_GENOLINK
GENOLINK: Bruker GENOLINK software.
Definition: cv.hpp:2838
MS_search_engine_specific_score_for_proteoforms
MS_search_engine_specific_score_for_proteoforms
search engine specific score for proteoforms: Search engine specific proteoform scores.
Definition: cv.hpp:9141
MS_isotopologue
MS_isotopologue
isotopologue: A molecular entity that differs only in isotopic composition (number of isotopic substi...
Definition: cv.hpp:9306
UNIMOD_Decarboxylation
UNIMOD_Decarboxylation
Decarboxylation: Decarboxylation.
Definition: cv.hpp:13593
UNIMOD_SMA
UNIMOD_SMA
SMA: N-Succinimidyl-2-morpholine acetate.
Definition: cv.hpp:9438
UNIMOD_Ser__Asp
UNIMOD_Ser__Asp
Ser->Asp: Ser->Asp substitution.
Definition: cv.hpp:11841
UO_watt
UO_watt
watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per seco...
Definition: cv.hpp:14145
pwiz::cv::cvids
PWIZ_API_DECL const std::vector< CVID > & cvids()
returns vector of all valid CVIDs
UO_force_unit
UO_force_unit
force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
Definition: cv.hpp:14124
UNIMOD_Pro__Glu
UNIMOD_Pro__Glu
Pro->Glu: Pro->Glu substitution.
Definition: cv.hpp:11757
MS_PeptideAtlas_dataset_URI
MS_PeptideAtlas_dataset_URI
PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
Definition: cv.hpp:6540
MS_pulse_energy
MS_pulse_energy
pulse energy: Describes output energy of the laser system. May be attenuated by filters or other mean...
Definition: cv.hpp:3234
UO_ratio_300010006
UO_ratio_300010006
ratio: A dimensionless ratio unit which, given a pair of quantities a and b, for which b is a multipl...
Definition: cv.hpp:14811
MS_precursor_ion_OBSOLETE
MS_precursor_ion_OBSOLETE
precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular d...
Definition: cv.hpp:1590
UNIMOD_Xlink_DSSO_158_
UNIMOD_Xlink_DSSO_158_
Xlink:DSSO[158]: Intact DSSO crosslinker.
Definition: cv.hpp:13542
MS_ionization_energy_OBSOLETE
MS_ionization_energy_OBSOLETE
ionization energy: The minimum energy required to remove an electron from an atom or molecule to prod...
Definition: cv.hpp:1044
MS_Trans_Proteomic_Pipeline_software
MS_Trans_Proteomic_Pipeline_software
Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipe...
Definition: cv.hpp:7308
UO_turns_per_second
UO_turns_per_second
turns per second: A rotational frequency unit which is equal to the number complete turn in a period ...
Definition: cv.hpp:14079
MS_param__internal_ya_ion
MS_param__internal_ya_ion
param: internal ya ion: Parameter information, type of product: internal ya ion.
Definition: cv.hpp:4620
UNIMOD_Hex_3_HexNAc_4_
UNIMOD_Hex_3_HexNAc_4_
Hex(3)HexNAc(4): Biantennary (-2 galactose).
Definition: cv.hpp:9918
MS_analog_digital_converter
MS_analog_digital_converter
analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electron...
Definition: cv.hpp:684
UNIMOD_Cys__CamSec
UNIMOD_Cys__CamSec
Cys->CamSec: Sec Iodoacetamide derivative.
Definition: cv.hpp:11304
MS_spectrum_sub_set_protein
MS_spectrum_sub_set_protein
spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein,...
Definition: cv.hpp:5205
MS_database_version_OBSOLETE
MS_database_version_OBSOLETE
database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
Definition: cv.hpp:3546
MS_LipidMatch
MS_LipidMatch
LipidMatch: An automated workflow for rule-based lipid identification using untargeted high-resolutio...
Definition: cv.hpp:9330
MS_boxcar_smoothing
MS_boxcar_smoothing
boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with tw...
Definition: cv.hpp:3039
MS_4800_Plus_MALDI_TOF_TOF
MS_4800_Plus_MALDI_TOF_TOF
4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
Definition: cv.hpp:2628
MS_Phenyx_input_parameter
MS_Phenyx_input_parameter
Phenyx input parameter: Search engine input parameters specific to Phenyx.
Definition: cv.hpp:6741
MS_MS_GFDB
MS_MS_GFDB
MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6594
UNIMOD_Label_13C_4__Oxidation
UNIMOD_Label_13C_4__Oxidation
Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
Definition: cv.hpp:12048
MS_mass_spectrometry_OBSOLETE
MS_mass_spectrometry_OBSOLETE
mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the re...
Definition: cv.hpp:1305
UNIMOD_Ub_fluorescein
UNIMOD_Ub_fluorescein
Ub-fluorescein: Ub Fluorescein probe addition.
Definition: cv.hpp:12033
MS_Mascot_score
MS_Mascot_score
Mascot:score: The Mascot result 'Score'.
Definition: cv.hpp:3972
UO_magnetic_flux_density_unit
UO_magnetic_flux_density_unit
magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
Definition: cv.hpp:14478
UNIMOD_Xlink_BS2G_217_
UNIMOD_Xlink_BS2G_217_
Xlink:BS2G[217]: Tris-quenched monolink of BS2-G crosslinker.
Definition: cv.hpp:13575
UNIMOD_Xlink_SMCC_219_
UNIMOD_Xlink_SMCC_219_
Xlink:SMCC[219]: Intact SMCC cross-link.
Definition: cv.hpp:13563
MS_PSM_level_FDRScore
MS_PSM_level_FDRScore
PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
Definition: cv.hpp:7515
UNIMOD_Hex_4_HexNAc_3_NeuAc_2_
UNIMOD_Hex_4_HexNAc_3_NeuAc_2_
Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
Definition: cv.hpp:12657
MS_chromatograph_file_format
MS_chromatograph_file_format
chromatograph file format: The format of the chromatography file being used. This could be a instrume...
Definition: cv.hpp:7776
UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_
UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_
dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
Definition: cv.hpp:13116
MS_TOPP_IDFilter
MS_TOPP_IDFilter
TOPP IDFilter: Filters results from protein or peptide identification engines based on different crit...
Definition: cv.hpp:7017
MS_CompassXtract
MS_CompassXtract
CompassXtract: Bruker software library for data access.
Definition: cv.hpp:2823
UNIMOD_Hydroxytrimethyl
UNIMOD_Hydroxytrimethyl
Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
Definition: cv.hpp:10236
MS_adiabatic_ionization
MS_adiabatic_ionization
adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to prod...
Definition: cv.hpp:1713
MS_variation_coefficient
MS_variation_coefficient
variation coefficient: The coefficient of variation.
Definition: cv.hpp:9312
MS_param__internal_yb_ion
MS_param__internal_yb_ion
param: internal yb ion: Parameter information, type of product: internal yb ion.
Definition: cv.hpp:4617
UNIMOD_Glycosyl
UNIMOD_Glycosyl
Glycosyl: Glycosyl-L-hydroxyproline.
Definition: cv.hpp:10137
UO_frequency_unit
UO_frequency_unit
frequency unit: A unit which is a standard measure of the number of repetitive actions in a particula...
Definition: cv.hpp:14118
UNIMOD_dHex_3_HexNAc_3_Kdn_1_
UNIMOD_dHex_3_HexNAc_3_Kdn_1_
dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
Definition: cv.hpp:13089
UNIMOD_Met__Xle
UNIMOD_Met__Xle
Met->Xle: Met->Leu/Ile substitution.
Definition: cv.hpp:10596
MS_Lipid_Pro
MS_Lipid_Pro
Lipid-Pro: A computational lipid identification solution for untargeted lipidomics on data-independen...
Definition: cv.hpp:9339
MS_Pro_ICAT
MS_Pro_ICAT
Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
Definition: cv.hpp:2676
UO_area_density_unit
UO_area_density_unit
area density unit: A density unit which is a standard measure of the mass exerting an influence on a ...
Definition: cv.hpp:13965
MS_reporter_ion_raw_value
MS_reporter_ion_raw_value
reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
Definition: cv.hpp:5982
MS_ion_mobility_array
MS_ion_mobility_array
ion mobility array: An array of ion mobility data.
Definition: cv.hpp:9102
MS_native_source_path
MS_native_source_path
native source path: The original source path used for directory-based sources.
Definition: cv.hpp:6585
MS_possible_charge_state
MS_possible_charge_state
possible charge state: A possible charge state of the ion in a situation where the charge of an ion i...
Definition: cv.hpp:2571
MS_ion_neutral_species_reaction_OBSOLETE
MS_ion_neutral_species_reaction_OBSOLETE
ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant t...
Definition: cv.hpp:1863
MS_proton_affinity_OBSOLETE
MS_proton_affinity_OBSOLETE
proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change...
Definition: cv.hpp:1098
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_
dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc —OR— Hex(2) HexNAc(2) dHex NeuAc —OR— Hex...
Definition: cv.hpp:13020
UNIMOD_Tyr__Thr
UNIMOD_Tyr__Thr
Tyr->Thr: Tyr->Thr substitution.
Definition: cv.hpp:11988
UNIMOD_Cys__Asp
UNIMOD_Cys__Asp
Cys->Asp: Cys->Asp substitution.
Definition: cv.hpp:11424
MS_TMT_reagent_129
MS_TMT_reagent_129
TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
Definition: cv.hpp:8310
MS_TopMG_input_parameter
MS_TopMG_input_parameter
TopMG input parameter: Search engine input parameters specific to TopMG.
Definition: cv.hpp:9225
UNIMOD_Cys__SecNEM
UNIMOD_Cys__SecNEM
Cys->SecNEM: N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:11358
UO_electric_field_strength_unit
UO_electric_field_strength_unit
electric field strength unit: The electric field strength is a unit which is a measure of the potenti...
Definition: cv.hpp:14598
MS_Mascot_ProteinGrouping
MS_Mascot_ProteinGrouping
Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of '...
Definition: cv.hpp:5691
MS_PD
MS_PD
PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or n...
Definition: cv.hpp:762
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_
dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
Definition: cv.hpp:12600
MS_TopPIC_mod_file
MS_TopPIC_mod_file
TopPIC:mod file: The text file containing the information of common PTMs.
Definition: cv.hpp:9198
MS_percolator_Q_value
MS_percolator_Q_value
percolator:Q value: Percolator:Q value.
Definition: cv.hpp:4878
UNIMOD_Methyl_2H_2_
UNIMOD_Methyl_2H_2_
Methyl:2H(2): Deuterium Methylation of Lysine.
Definition: cv.hpp:9861
MS_translation_frame
MS_translation_frame
translation frame: The translated open reading frames from a nucleotide database considered in the se...
Definition: cv.hpp:3570
MS_NCBI___p_
MS_NCBI___p_
NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
Definition: cv.hpp:4458
MS_contact_attribute
MS_contact_attribute
contact attribute: Details about a person or organization to contact in case of concern or discussion...
Definition: cv.hpp:2406
MS_percolator_PEP
MS_percolator_PEP
percolator:PEP: Posterior error probability.
Definition: cv.hpp:4884
UNIMOD_cGMP_RMP_loss
UNIMOD_cGMP_RMP_loss
cGMP+RMP-loss: S-guanylation-2.
Definition: cv.hpp:11007
MS_MIDAS_Workflow_Designer
MS_MIDAS_Workflow_Designer
MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2688
MS_feature_format
MS_feature_format
feature format: TopFD feature file format.
Definition: cv.hpp:9123
UO_millivolt
UO_millivolt
millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3...
Definition: cv.hpp:14538
MS_peptide_level_scoring
MS_peptide_level_scoring
peptide-level scoring: Peptide-level scoring performed.
Definition: cv.hpp:7920
MS_LOBSTAHS
MS_LOBSTAHS
LOBSTAHS: Adduct-Based lipidomics software for the discovery and identification of oxidative stress b...
Definition: cv.hpp:9360
MS_TopMG_error_tolerance
MS_TopMG_error_tolerance
TopMG:error tolerance: Error tolerance for precursor and fragment masses in PPM.
Definition: cv.hpp:9234
MS_ClinProTools
MS_ClinProTools
ClinProTools: Bruker ClinProTools software.
Definition: cv.hpp:2802
MS_median_of_spectra
MS_median_of_spectra
median of spectra: Spectra is combined by calculating the median of the spectra.
Definition: cv.hpp:2328
MS_decoy_DB_details
MS_decoy_DB_details
decoy DB details: Details of decoy generation and database structure.
Definition: cv.hpp:4749
MS_modification_localization_scoring
MS_modification_localization_scoring
modification localization scoring: Modification localization scoring performed.
Definition: cv.hpp:7923
MS_single_identification_result_attribute
MS_single_identification_result_attribute
single identification result attribute: Attribute of a single identification item (as opposed to a li...
Definition: cv.hpp:8541
MS_crushed_crystal_MALDI_sample_preparation
MS_crushed_crystal_MALDI_sample_preparation
crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
Definition: cv.hpp:6393
MS_6340_Ion_Trap_LC_MS
MS_6340_Ion_Trap_LC_MS
6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:2025
MS_spectrum
MS_spectrum
spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical ...
Definition: cv.hpp:1908
MS_Orbitrap_Fusion
MS_Orbitrap_Fusion
Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
Definition: cv.hpp:7698
MS_isolation_width_OBSOLETE
MS_isolation_width_OBSOLETE
isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selec...
Definition: cv.hpp:330
UNIMOD_Label_13C_6__Dimethyl
UNIMOD_Label_13C_6__Dimethyl
Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
Definition: cv.hpp:11253
MS_Applied_Biosystems_instrument_model
MS_Applied_Biosystems_instrument_model
Applied Biosystems instrument model: Applied Biosystems instrument model.
Definition: cv.hpp:2085
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_
Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:13260
MS_Spectrum_Mill_for_MassHunter_Workstation
MS_Spectrum_Mill_for_MassHunter_Workstation
Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of...
Definition: cv.hpp:2730
MS_mass_analyzer_type
MS_mass_analyzer_type
mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
Definition: cv.hpp:1911
MS_MaxQuant_PEP
MS_MaxQuant_PEP
MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
Definition: cv.hpp:6117
MS_single_peak_list_nativeID_format__combined_spectra
MS_single_peak_list_nativeID_format__combined_spectra
single peak list nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition: cv.hpp:8421
MS_continuous_mass_spectrum
MS_continuous_mass_spectrum
continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded...
Definition: cv.hpp:729
MS_PEAKS_proteinScore
MS_PEAKS_proteinScore
PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
Definition: cv.hpp:6276
UO_picovolt
UO_picovolt
picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12...
Definition: cv.hpp:14550
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_
dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
Definition: cv.hpp:13029
UO_candela_per_square_meter
UO_candela_per_square_meter
candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radi...
Definition: cv.hpp:14058
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5565
MS_M_H_ion_1002820
MS_M_H_ion_1002820
M+H ion: M+H ion from positive ion mode (M in the property ionMass denotes the mass of the neutral mo...
Definition: cv.hpp:8883
UNIMOD_Met__Hpg
UNIMOD_Met__Hpg
Met->Hpg: Methionine replacement by homopropargylglycine.
Definition: cv.hpp:11082
MS_group_PSMs_by_sequence
MS_group_PSMs_by_sequence
group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
Definition: cv.hpp:7938
MS_distonic_ion_OBSOLETE
MS_distonic_ion_OBSOLETE
distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin canno...
Definition: cv.hpp:1659
UNIMOD_DiLeu4plex118
UNIMOD_DiLeu4plex118
DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
Definition: cv.hpp:12165
MS_DTASelect_format
MS_DTASelect_format
DTASelect format: DTASelect file format.
Definition: cv.hpp:4791
MS_LTQ_Velos
MS_LTQ_Velos
LTQ Velos: Thermo Scientific LTQ Velos MS.
Definition: cv.hpp:3261
MS_intensity_unit
MS_intensity_unit
intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when usin...
Definition: cv.hpp:405
MS_DeBunker_score
MS_DeBunker_score
DeBunker:score: Score specific to DeBunker.
Definition: cv.hpp:6345
UNIMOD_spermidine
UNIMOD_spermidine
spermidine: Spermidine adduct.
Definition: cv.hpp:12354
UNIMOD_Iodo
UNIMOD_Iodo
Iodo: Iodination.
Definition: cv.hpp:9621
UO_dynamic_range_unit
UO_dynamic_range_unit
dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast av...
Definition: cv.hpp:14511
UNIMOD_Val__Asp
UNIMOD_Val__Asp
Val->Asp: Val->Asp substitution.
Definition: cv.hpp:10764
UNIMOD_Puromycin
UNIMOD_Puromycin
Puromycin: Puromycin.
Definition: cv.hpp:11232
UNIMOD_Hex_2_HexNAc_2_Pent_1_
UNIMOD_Hex_2_HexNAc_2_Pent_1_
Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
Definition: cv.hpp:9696
MS_tolerance_on_types_OBSOLETE
MS_tolerance_on_types_OBSOLETE
tolerance on types: OBSOLETE: Tolerance on types.
Definition: cv.hpp:3654
MS_SpectraST_dot_bias
MS_SpectraST_dot_bias
SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
Definition: cv.hpp:4653
UNIMOD_CIGG
UNIMOD_CIGG
CIGG: Ubiquitin D (FAT10) leaving after chymotrypsin digestion Cys-Ile-Gly-Gly.
Definition: cv.hpp:13791
UNIMOD_Delta_Se_1_
UNIMOD_Delta_Se_1_
Delta:Se(1): Selenyl.
Definition: cv.hpp:10179
MS_MS1_feature_area
MS_MS1_feature_area
MS1 feature area: Area of MS1 feature.
Definition: cv.hpp:5946
UNIMOD_Archaeol
UNIMOD_Archaeol
Archaeol: S-diphytanylglycerol diether.
Definition: cv.hpp:10143
MS_TripleTOF_4600
MS_TripleTOF_4600
TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
Definition: cv.hpp:8202
UNIMOD_Formyl
UNIMOD_Formyl
Formyl: Formylation.
Definition: cv.hpp:9603
UNIMOD_GlycerylPE
UNIMOD_GlycerylPE
GlycerylPE: Glycerylphosphorylethanolamine.
Definition: cv.hpp:10110
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
Definition: cv.hpp:12702
UNIMOD_Ser__Glu
UNIMOD_Ser__Glu
Ser->Glu: Ser->Glu substitution.
Definition: cv.hpp:11844
UNIMOD_Ser__Cys
UNIMOD_Ser__Cys
Ser->Cys: Ser->Cys substitution.
Definition: cv.hpp:10716
UO_mega
UO_mega
mega: A prefix in the metric system denoting a factor of million.
Definition: cv.hpp:14676
UNIMOD_Thr__Pro
UNIMOD_Thr__Pro
Thr->Pro: Thr->Pro substitution.
Definition: cv.hpp:10740
UNIMOD_dHex_4_Hex_3_HexNAc_2_NeuAc_1_
UNIMOD_dHex_4_Hex_3_HexNAc_2_NeuAc_1_
dHex(4)Hex(3)HexNAc(2)NeuAc(1): DHex(4) Hex(3) HexNAc(2) NeuAc(1).
Definition: cv.hpp:13722
MS_thomson
MS_thomson
thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass ...
Definition: cv.hpp:393
MS_SEQUEST_TopPercentMostIntense
MS_SEQUEST_TopPercentMostIntense
SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam.
Definition: cv.hpp:3747
UNIMOD_N_dimethylphosphate
UNIMOD_N_dimethylphosphate
N-dimethylphosphate: N-dimethylphosphate.
Definition: cv.hpp:12222
UNIMOD_Cation_Na
UNIMOD_Cation_Na
Cation:Na: Sodium adduct.
Definition: cv.hpp:9441
MS_MS_GF_PepQValue
MS_MS_GF_PepQValue
MS-GF:PepQValue: MS-GF peptide-level Q-value.
Definition: cv.hpp:6615
UO_energy_unit
UO_energy_unit
energy unit: A unit which is a standard measure of the work done by a certain force (gravitational,...
Definition: cv.hpp:14136
UNIMOD_dHex
UNIMOD_dHex
dHex: Fucose.
Definition: cv.hpp:9891
UO_microgram
UO_microgram
microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
Definition: cv.hpp:13872
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_
dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
Definition: cv.hpp:12660
MS_lowest_observed_wavelength
MS_lowest_observed_wavelength
lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2520
MS_analog_ion_OBSOLETE
MS_analog_ion_OBSOLETE
analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the th...
Definition: cv.hpp:1638
MS_total_XIC_area
MS_total_XIC_area
total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e....
Definition: cv.hpp:7686
MS_nucleic_acid_base_modification
MS_nucleic_acid_base_modification
nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
Definition: cv.hpp:6528
UNIMOD_Phe__Val
UNIMOD_Phe__Val
Phe->Val: Phe->Val substitution.
Definition: cv.hpp:10488
MS_TargetAnalysis
MS_TargetAnalysis
TargetAnalysis: Bruker TargetAnalysis software.
Definition: cv.hpp:2883
UNIMOD_Trimethyl_13C_3_2H_9_
UNIMOD_Trimethyl_13C_3_2H_9_
Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
Definition: cv.hpp:12345
MS_pmf_search
MS_pmf_search
pmf search: A peptide mass fingerprint search.
Definition: cv.hpp:3702
MS_ITQ_1100
MS_ITQ_1100
ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
Definition: cv.hpp:2583
MS_cleavage_agent_details
MS_cleavage_agent_details
cleavage agent details: Details of cleavage agent (enzyme).
Definition: cv.hpp:3618
MS_ProteinScape_SearchEventId
MS_ProteinScape_SearchEventId
ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
Definition: cv.hpp:4893
UNIMOD_Biotin_PEG_PRA
UNIMOD_Biotin_PEG_PRA
Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
Definition: cv.hpp:11070
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative fac...
Definition: cv.hpp:5481
MS_liquid_chromatography_separation
MS_liquid_chromatography_separation
liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the m...
Definition: cv.hpp:7260
MS_Phenyx_AC
MS_Phenyx_AC
Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4572
UNIMOD_Hex_1_Pent_3_Me_1_
UNIMOD_Hex_1_Pent_3_Me_1_
Hex(1)Pent(3)Me(1): Hex Pent(3) Me.
Definition: cv.hpp:13647
MS_scan_law
MS_scan_law
scan law: Describes the function in control of the m/z scan (for scanning instruments)....
Definition: cv.hpp:318
MS_LTQ_Orbitrap_Elite
MS_LTQ_Orbitrap_Elite
LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
Definition: cv.hpp:6144
MS_ANOVA_p_value
MS_ANOVA_p_value
ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
Definition: cv.hpp:5976
MS_DB_filter_on_accession_numbers
MS_DB_filter_on_accession_numbers
DB filter on accession numbers: Filtering applied specifically by accession number pattern.
Definition: cv.hpp:3561
UO_kilogram_per_cubic_meter
UO_kilogram_per_cubic_meter
kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divide...
Definition: cv.hpp:14052
UNIMOD_Hex_2_HexNAc_3_Sulf_1_
UNIMOD_Hex_2_HexNAc_3_Sulf_1_
Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:12942
MS_Mascot_MinMSMSThreshold
MS_Mascot_MinMSMSThreshold
Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1,...
Definition: cv.hpp:4368
MS_desorption_electrospray_ionization
MS_desorption_electrospray_ionization
desorption electrospray ionization: Combination of electrospray and desorption ionization method that...
Definition: cv.hpp:6474
MS_contact_name
MS_contact_name
contact name: Name of the contact person or organization.
Definition: cv.hpp:2409
MS_ion_role_OBSOLETE
MS_ion_role_OBSOLETE
ion role: Ion Role.
Definition: cv.hpp:2124
MS_SEND
MS_SEND
SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the mat...
Definition: cv.hpp:1374
UNIMOD_HN2_mustard
UNIMOD_HN2_mustard
HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
Definition: cv.hpp:12276
MS_PeptideShaker_peptide_score
MS_PeptideShaker_peptide_score
PeptideShaker peptide score: The probability based PeptideShaker peptide score.
Definition: cv.hpp:7854
MS_ionization_cross_section_OBSOLETE
MS_ionization_cross_section_OBSOLETE
ionization cross section: A measure of the probability that a given ionization process will occur whe...
Definition: cv.hpp:1038
MS_SEQUEST_sort_by_z
MS_SEQUEST_sort_by_z
SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
Definition: cv.hpp:3741
MS_electron_multiplier
MS_electron_multiplier
electron multiplier: A device to amplify the current of a beam or packet of charged particles or phot...
Definition: cv.hpp:1212
MS_overlayer_MALDI_sample_preparation
MS_overlayer_MALDI_sample_preparation
overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method...
Definition: cv.hpp:6399
MS_identification_attribute
MS_identification_attribute
identification attribute: Attribute of an identification item in the result of mass spectrometry prot...
Definition: cv.hpp:8538
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative fac...
Definition: cv.hpp:5496
MS_amaZon_ETD
MS_amaZon_ETD
amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI,...
Definition: cv.hpp:5031
MS_Bruker_Daltonics_micrOTOF_series
MS_Bruker_Daltonics_micrOTOF_series
Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
Definition: cv.hpp:5013
MS_spectrum_title
MS_spectrum_title
spectrum title: A free-form text title describing a spectrum.
Definition: cv.hpp:3075
UNIMOD_Arg__Xle
UNIMOD_Arg__Xle
Arg->Xle: Arg->Leu/Ile substitution.
Definition: cv.hpp:10689
MS_OBSOLETE_charge_number_OBSOLETE
MS_OBSOLETE_charge_number_OBSOLETE
OBSOLETE charge number: The total charge on an ion divided by the electron charge e....
Definition: cv.hpp:1014
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta,...
Definition: cv.hpp:5517
MS_MyriMatch
MS_MyriMatch
MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
Definition: cv.hpp:5157
MS_McLafferty_Rearrangement_OBSOLETE
MS_McLafferty_Rearrangement_OBSOLETE
McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-me...
Definition: cv.hpp:1878
MS_4800_Proteomics_Analyzer
MS_4800_Proteomics_Analyzer
4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
Definition: cv.hpp:2646
PEFF_DbDescription
PEFF_DbDescription
DbDescription: Sequence Database Short description.
Definition: cv.hpp:135
MS_EVOQ_Qube
MS_EVOQ_Qube
EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
Definition: cv.hpp:7344
MS_contact_affiliation
MS_contact_affiliation
contact affiliation: Home institution of the contact person.
Definition: cv.hpp:2421
MS_ZCore_probScore
MS_ZCore_probScore
ZCore:probScore: The ZCore probability score.
Definition: cv.hpp:6279
MS_max_peak_picking
MS_max_peak_picking
max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to co...
Definition: cv.hpp:3099
MS_spectrum_descriptions
MS_spectrum_descriptions
spectrum descriptions: Descriptions of the input spectra.
Definition: cv.hpp:4476
MS_micrOTOF_II
MS_micrOTOF_II
micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:5025
MS_double_focusing_mass_spectrometer_OBSOLETE
MS_double_focusing_mass_spectrometer_OBSOLETE
double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing a...
Definition: cv.hpp:1428
MS_quantification_reagent
MS_quantification_reagent
quantification reagent: Reagent used in labeled quantification methods.
Definition: cv.hpp:8259
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
transition purported from an MS/MS spectrum on a different, specified instrument: The transition has ...
Definition: cv.hpp:3444
MS_thermospray_inlet
MS_thermospray_inlet
thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heat...
Definition: cv.hpp:486
MS_frag__v_ion
MS_frag__v_ion
frag: v ion: Fragmentation information, type of product: v ion.
Definition: cv.hpp:4143
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc —OR— Hex(3) HexNAc(5) dHex Kdn.
Definition: cv.hpp:13389
MS_ProteinExtractor_UseMascot
MS_ProteinExtractor_UseMascot
ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinE...
Definition: cv.hpp:4689
MS_PIA_protein_score
MS_PIA_protein_score
PIA:protein score: The score given to a protein by any protein inference.
Definition: cv.hpp:7632
MS_iRT_retention_time_normalization_standard
MS_iRT_retention_time_normalization_standard
iRT retention time normalization standard: A de facto standard providing the retention times at which...
Definition: cv.hpp:6447
MS_SpectraST
MS_SpectraST
SpectraST: SpectraST was used to analyze the spectra.
Definition: cv.hpp:4836
MS_CID
MS_CID
CID (collision-induced dissociation): The dissociation of an ion after collisional excitation....
Definition: cv.hpp:750
MS_Dataset_with_no_associated_published_manuscript
MS_Dataset_with_no_associated_published_manuscript
Dataset with no associated published manuscript: A dataset which does not have an associated publishe...
Definition: cv.hpp:8982
MS_MaxQuant_LFQ_intensity
MS_MaxQuant_LFQ_intensity
MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
Definition: cv.hpp:6120
MS_heavy_labeled_peptide
MS_heavy_labeled_peptide
heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isoto...
Definition: cv.hpp:3375
UNIMOD_Hex_10_Phos_3_
UNIMOD_Hex_10_Phos_3_
Hex(10)Phos(3): Hex(10) Phos(3).
Definition: cv.hpp:13302
UNIMOD_Thr__Trp
UNIMOD_Thr__Trp
Thr->Trp: Thr->Trp substitution.
Definition: cv.hpp:11886
MS_PI
MS_PI
PI (photoionization): The ionization of an atom or molecule by a photon, written M + h?...
Definition: cv.hpp:1338
MS_protein_accession
MS_protein_accession
protein accession: Accession number for a specific protein in a database.
Definition: cv.hpp:3357
UNIMOD_Label_13C_4_
UNIMOD_Label_13C_4_
Label:13C(4): 13C4 Methionine label.
Definition: cv.hpp:12045
UO_magnetic_flux_unit
UO_magnetic_flux_unit
magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of th...
Definition: cv.hpp:14472
UNIMOD_Ethyl_Deamidated
UNIMOD_Ethyl_Deamidated
Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
Definition: cv.hpp:11133
MS_protein_rank
MS_protein_rank
protein rank: The rank of the protein in a list sorted by the search engine.
Definition: cv.hpp:4305
UNIMOD_Label_18O_1_
UNIMOD_Label_18O_1_
Label:18O(1): O18 Labeling.
Definition: cv.hpp:9810
UO_irradiance_unit
UO_irradiance_unit
irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a su...
Definition: cv.hpp:14259
MS_6300_Series_Ion_Trap_Data_Analysis_Software
MS_6300_Series_Ion_Trap_Data_Analysis_Software
6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass ...
Definition: cv.hpp:2733
MS_solid_sample_state
MS_solid_sample_state
solid sample state: State if the sample is in solid form.
Definition: cv.hpp:426
MS_modification_probability
MS_modification_probability
modification probability: The a priori probability of a modification.
Definition: cv.hpp:6042
MS_PSM_level_p_value
MS_PSM_level_p_value
PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
Definition: cv.hpp:7506
UO_nanogram
UO_nanogram
nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
Definition: cv.hpp:13875
MS_ABI_WIFF_format
MS_ABI_WIFF_format
ABI WIFF format: Applied Biosystems WIFF file format.
Definition: cv.hpp:2295
MS_Continuum_Mass_Spectrum
MS_Continuum_Mass_Spectrum
Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded ...
Definition: cv.hpp:732
MS_SEQUEST_TopNumber
MS_SEQUEST_TopNumber
SEQUEST:TopNumber: Specify "number" as value of the CVParam.
Definition: cv.hpp:3777
MS_instrument_specific_scan_attribute
MS_instrument_specific_scan_attribute
instrument specific scan attribute: Instrument specific scan properties that are associated with a va...
Definition: cv.hpp:8031
MS_TOPP_software
MS_TOPP_software
TOPP software: TOPP (The OpenMS proteomics pipeline) software.
Definition: cv.hpp:2925
MS_translation_table_description
MS_translation_table_description
translation table description: A URL that describes the translation table used to translate the nucle...
Definition: cv.hpp:4668
MS_Phenyx_Turbo
MS_Phenyx_Turbo
Phenyx:Turbo: The turbo mode parameter in Phenyx.
Definition: cv.hpp:4545
UNIMOD_Dihydroxyimidazolidine
UNIMOD_Dihydroxyimidazolidine
Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
Definition: cv.hpp:10983
UNIMOD_3_phosphoglyceryl
UNIMOD_3_phosphoglyceryl
3-phosphoglyceryl: 3-phosphoglyceryl.
Definition: cv.hpp:12273
MS_external_HDF5_dataset
MS_external_HDF5_dataset
external HDF5 dataset: The HDF5 dataset location containing the binary data, relative to the dataset ...
Definition: cv.hpp:8946
UO_chain
UO_chain
chain: A length unit which is equal to 20.1168 metres, 66 feet, or 22 yards.
Definition: cv.hpp:14838
MS_MS2_tag_based_protein_level_quantitation
MS_MS2_tag_based_protein_level_quantitation
MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
Definition: cv.hpp:6522
UO_centimeter
UO_centimeter
centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
Definition: cv.hpp:13848
MS_32_bit_integer
MS_32_bit_integer
32-bit integer: Signed 32-bit little-endian integer.
Definition: cv.hpp:2163
MS_ProteinExtractor_GenerateNonRedundant
MS_ProteinExtractor_GenerateNonRedundant
ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated...
Definition: cv.hpp:4674
UO_microliters_per_minute
UO_microliters_per_minute
microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a...
Definition: cv.hpp:14610
UNIMOD_Ala__Cys
UNIMOD_Ala__Cys
Ala->Cys: Ala->Cys substitution.
Definition: cv.hpp:11388
MS_ProfileAnalysis
MS_ProfileAnalysis
ProfileAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2853
UNIMOD_Delta_H_2_C_3_
UNIMOD_Delta_H_2_C_3_
Delta:H(2)C(3): Acrolein addition +38.
Definition: cv.hpp:9774
MS_magnetic_sector
MS_magnetic_sector
magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam tha...
Definition: cv.hpp:540
MS_ten_percent_valley
MS_ten_percent_valley
ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the ...
Definition: cv.hpp:576
MS_SEQUEST_CullTo
MS_SEQUEST_CullTo
SEQUEST:CullTo: Specify cull string as value of the CVParam.
Definition: cv.hpp:3786
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmen...
Definition: cv.hpp:5262
UNIMOD_Difuran
UNIMOD_Difuran
Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
Definition: cv.hpp:12066
UNIMOD_Label_13C_4_15N_1_
UNIMOD_Label_13C_4_15N_1_
Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
Definition: cv.hpp:12108
MS_TSQ_8000_Evo
MS_TSQ_8000_Evo
TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
Definition: cv.hpp:8025
MS_source_interface
MS_source_interface
source interface: The source interface.
Definition: cv.hpp:6213
UNIMOD_Menadione
UNIMOD_Menadione
Menadione: Menadione quinone derivative.
Definition: cv.hpp:9903
MS_ICAT_light_reagent
MS_ICAT_light_reagent
ICAT light reagent: The name of the sample labelled with the light ICAT label.
Definition: cv.hpp:8268
MS_MS2_format
MS_MS2_format
MS2 format: MS2 file format for MS2 spectral data.
Definition: cv.hpp:4794
MS_atmospheric_pressure_photoionization
MS_atmospheric_pressure_photoionization
atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ...
Definition: cv.hpp:1719
MS_scan_number_only_nativeID_format__combined_spectra
MS_scan_number_only_nativeID_format__combined_spectra
scan number only nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition: cv.hpp:8424
MS_scan_rate
MS_scan_rate
scan rate: Rate in Th/sec for scanning analyzers.
Definition: cv.hpp:306
UNIMOD_bisANS_sulfonates
UNIMOD_bisANS_sulfonates
bisANS-sulfonates: BisANS with loss of both sulfonates.
Definition: cv.hpp:12177
MS_LXQ
MS_LXQ
LXQ: Finnigan LXQ MS.
Definition: cv.hpp:1935
UNIMOD_Delta_H_5_C_2_
UNIMOD_Delta_H_5_C_2_
Delta:H(5)C(2): Dimethylation of proline residue.
Definition: cv.hpp:10365
MS_ProteomeXchange_accession_number
MS_ProteomeXchange_accession_number
ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
Definition: cv.hpp:6177
MS_ProteinProspector_score
MS_ProteinProspector_score
ProteinProspector:score: The ProteinProspector result 'Score'.
Definition: cv.hpp:6579
MS_CXP
MS_CXP
CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole in...
Definition: cv.hpp:6255
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_
dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
Definition: cv.hpp:13206
MS_mzidLib_Perform_emPAI_on_mzid
MS_mzidLib_Perform_emPAI_on_mzid
mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
Definition: cv.hpp:7176
MS_Mascot_SigThresholdType
MS_Mascot_SigThresholdType
Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or '...
Definition: cv.hpp:5688
UNIMOD_ExacTagAmine
UNIMOD_ExacTagAmine
ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
Definition: cv.hpp:10884
MS_ion_stability_type_OBSOLETE
MS_ion_stability_type_OBSOLETE
ion stability type: Stability type of the ion.
Definition: cv.hpp:7479
UO_week
UO_week
week: A time unit which is equal to 7 days.
Definition: cv.hpp:13905
PEFF_SpecificValue
PEFF_SpecificValue
SpecificValue: PEFF specific values for a defined key.
Definition: cv.hpp:162
MS_isolation_window_upper_offset
MS_isolation_window_upper_offset
isolation window upper offset: The extent of the isolation window in m/z above the isolation window t...
Definition: cv.hpp:3186
MS_laser_desorption_ionization
MS_laser_desorption_ionization
laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser wit...
Definition: cv.hpp:1752
UO_kilovolt_hour
UO_kilovolt_hour
kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
Definition: cv.hpp:14487
UO_rotational_frequency_unit
UO_rotational_frequency_unit
rotational frequency unit: A unit which is a standard measure of the number of rotations in a given t...
Definition: cv.hpp:13977
MS_SEQUEST_LimitTo
MS_SEQUEST_LimitTo
SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam.
Definition: cv.hpp:3615
MS_ITQ_700
MS_ITQ_700
ITQ 700: Thermo Scientific ITQ 700 GC-MS.
Definition: cv.hpp:2577
MS_modification_index
MS_modification_index
modification index: The order of modifications to be referenced elsewhere in the document.
Definition: cv.hpp:7962
UNIMOD_LG_lactam_K
UNIMOD_LG_lactam_K
LG-lactam-K: Levuglandinyl - lysine lactam adduct.
Definition: cv.hpp:10314
MS_special_processing
MS_special_processing
special processing: Details describing a special processing.
Definition: cv.hpp:7917
UNIMOD_dHex_3_Hex_4_HexNAc_4_
UNIMOD_dHex_3_Hex_4_HexNAc_4_
dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
Definition: cv.hpp:13392
UNIMOD_UgiJoullieProGlyProGly
UNIMOD_UgiJoullieProGlyProGly
UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
Definition: cv.hpp:12075
MS_6542_Q_TOF_LC_MS
MS_6542_Q_TOF_LC_MS
6542 Q-TOF LC/MS: The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrum...
Definition: cv.hpp:8790
MS______FYWL_____P_
MS______FYWL_____P_
(?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
Definition: cv.hpp:4404
MS_Pepitome_mzFidelity
MS_Pepitome_mzFidelity
Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5181
MS_Byonic_PEP
MS_Byonic_PEP
Byonic:PEP: Byonic posterior error probability.
Definition: cv.hpp:7242
MS_phosphoRS_site_probability
MS_phosphoRS_site_probability
phosphoRS site probability: Estimate of the probability that the respective site is truly phosphoryla...
Definition: cv.hpp:6336
MS_normalized_collision_energy
MS_normalized_collision_energy
normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional ener...
Definition: cv.hpp:780
MS_electrospray_ionization
MS_electrospray_ionization
electrospray ionization: A process in which ionized species in the gas phase are produced from an ana...
Definition: cv.hpp:507
MS_collision_energy_ramp_end
MS_collision_energy_ramp_end
collision energy ramp end: Collision energy at the end of the collision energy ramp.
Definition: cv.hpp:6486
UNIMOD_probiotinhydrazide
UNIMOD_probiotinhydrazide
probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
Definition: cv.hpp:10014
MS_flowing_afterglow
MS_flowing_afterglow
flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries ...
Definition: cv.hpp:1224
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_
Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
Definition: cv.hpp:12393
UNIMOD_iodoTMT
UNIMOD_iodoTMT
iodoTMT: Native iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:12186
UNIMOD_GluGluGlu
UNIMOD_GluGluGlu
GluGluGlu: Triglutamyl.
Definition: cv.hpp:10254
MS_elution_time
MS_elution_time
elution time: The time of elution from all used chromatographic columns (one or more) in the chromato...
Definition: cv.hpp:3177
UNIMOD_Guanidinyl
UNIMOD_Guanidinyl
Guanidinyl: Guanidination.
Definition: cv.hpp:9498
MS_Morpheus
MS_Morpheus
Morpheus: Morpheus search engine.
Definition: cv.hpp:8442
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern,...
Definition: cv.hpp:5325
UNIMOD_Didehydro
UNIMOD_Didehydro
Didehydro: 2-amino-3-oxo-butanoic_acid.
Definition: cv.hpp:10122
MS_SEQUEST_out_folder
MS_SEQUEST_out_folder
SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
Definition: cv.hpp:4158
UO_milliampere
UO_milliampere
milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3...
Definition: cv.hpp:13914
UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_
UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_
dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn —OR— Hex(2) dHex NeuAc.
Definition: cv.hpp:12819
MS_6420_Triple_Quadrupole_LC_MS
MS_6420_Triple_Quadrupole_LC_MS
6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7782
MS_H_PINS_retention_time_normalization_standard
MS_H_PINS_retention_time_normalization_standard
H-PINS retention time normalization standard: The de facto standard providing the retention times at ...
Definition: cv.hpp:3411
UNIMOD_HexNAc_3_Sulf_1_
UNIMOD_HexNAc_3_Sulf_1_
HexNAc(3)Sulf(1): HexNAc(3) Sulf.
Definition: cv.hpp:12780
UNIMOD_Gln__His
UNIMOD_Gln__His
Gln->His: Gln->His substitution.
Definition: cv.hpp:10653
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_
dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
Definition: cv.hpp:13086
MS_quantitation_software_version_OBSOLETE
MS_quantitation_software_version_OBSOLETE
quantitation software version: Quantitation software version.
Definition: cv.hpp:3879
MS_Byonic__Peptide_AbsLogProb
MS_Byonic__Peptide_AbsLogProb
Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7377
pwiz::cv::CVTermInfo
structure for holding CV term info
Definition: cv.hpp:14944
MS_Q_Exactive_HF_X
MS_Q_Exactive_HF_X
Q Exactive HF-X: Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS.
Definition: cv.hpp:9054
MS_TOPP_IDMerger
MS_TOPP_IDMerger
TOPP IDMerger: Merges several protein/peptide identification files into one file.
Definition: cv.hpp:6912
UO_watt_per_steradian_per_square_meter
UO_watt_per_steradian_per_square_meter
watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power inci...
Definition: cv.hpp:14271
MS_ProteinExtractor_Weighting
MS_ProteinExtractor_Weighting
ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
Definition: cv.hpp:6312
UNIMOD_Gln__Thr
UNIMOD_Gln__Thr
Gln->Thr: Gln->Thr substitution.
Definition: cv.hpp:11808
UNIMOD_Xlink_BuUrBu_213_
UNIMOD_Xlink_BuUrBu_213_
Xlink:BuUrBu[213]: Ammonia quenched monolink of BuUrBu crosslinker.
Definition: cv.hpp:13533
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass ...
Definition: cv.hpp:117
UNIMOD_NQIGG
UNIMOD_NQIGG
NQIGG: SUMOylation by Giardia lamblia.
Definition: cv.hpp:13410
MS______ALIV_____P_
MS______ALIV_____P_
(?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
Definition: cv.hpp:6294
MS_MS1_format
MS_MS1_format
MS1 format: MS1 file format for MS1 spectral data.
Definition: cv.hpp:8244
MS_Phenyx_Auto
MS_Phenyx_Auto
Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
Definition: cv.hpp:4587
MS_DB_MW_filter_maximum
MS_DB_MW_filter_maximum
DB MW filter maximum: Maximum value of molecular weight filter.
Definition: cv.hpp:4038
MS_ProteomeDiscoverer_max_number_of_same_modifs
MS_ProteomeDiscoverer_max_number_of_same_modifs
ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per ...
Definition: cv.hpp:7431
MS_TopMG_variable_PTM_number
MS_TopMG_variable_PTM_number
TopMG:variable PTM number: Maximum number of variable PTMs.
Definition: cv.hpp:9264
MS_search_engine_specific_score_for_protein_groups
MS_search_engine_specific_score_for_protein_groups
search engine specific score for protein groups: Search engine specific protein group scores.
Definition: cv.hpp:7554
MS_CompassXport
MS_CompassXport
CompassXport: Bruker stand-alone software for data conversion.
Definition: cv.hpp:2820
MS_free_electron_laser
MS_free_electron_laser
free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which...
Definition: cv.hpp:3255
MS_search_engine_specific_score_for_proteins
MS_search_engine_specific_score_for_proteins
search engine specific score for proteins: Search engine specific protein scores.
Definition: cv.hpp:7539
MS_association_reaction_OBSOLETE
MS_association_reaction_OBSOLETE
association reaction: The reaction of an ion with a neutral species in which the reactants combine to...
Definition: cv.hpp:1800
UNIMOD_Hex
UNIMOD_Hex
Hex: Hexose.
Definition: cv.hpp:9465
UNIMOD_Met__Pro
UNIMOD_Met__Pro
Met->Pro: Met->Pro substitution.
Definition: cv.hpp:11703
MS_protein_detection_statistical_threshold
MS_protein_detection_statistical_threshold
protein detection statistical threshold: Estimated statistical threshold used for protein detection.
Definition: cv.hpp:8169
UNIMOD_Cys__Xle
UNIMOD_Cys__Xle
Cys->Xle: Cys->Leu/Ile substitution.
Definition: cv.hpp:11433
MS_internal_protein_reference_used
MS_internal_protein_reference_used
internal protein reference used: States whether an internal protein reference is used or not in absol...
Definition: cv.hpp:7998
UNIMOD_dHex_1_Hex_2_HexNAc_1_
UNIMOD_dHex_1_Hex_2_HexNAc_1_
dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
Definition: cv.hpp:12777
UNIMOD_pupylation
UNIMOD_pupylation
pupylation: Addition of GGE.
Definition: cv.hpp:12042
pwiz::cv::CVTermInfo::id_list
std::vector< CVID > id_list
Definition: cv.hpp:14951
MS_MS_Numpress_short_logged_float_compression
MS_MS_Numpress_short_logged_float_compression
MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compress...
Definition: cv.hpp:7392
MS_Triple_Quad_6500
MS_Triple_Quad_6500
Triple Quad 6500: SCIEX Triple Quad 6500.
Definition: cv.hpp:8235
MS_no_peptide_level_threshold
MS_no_peptide_level_threshold
no peptide-level threshold: Indicating that no peptide-level threshold was used.
Definition: cv.hpp:7956
UNIMOD_Biotin_Thermo_21901_2H2O
UNIMOD_Biotin_Thermo_21901_2H2O
Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
Definition: cv.hpp:12153
MS_TOPP_FeatureFinderMRM
MS_TOPP_FeatureFinderMRM
TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
Definition: cv.hpp:6957
UO_electric_potential_difference_unit
UO_electric_potential_difference_unit
electric potential difference unit: A unit which is a standard measure of the work done per unit char...
Definition: cv.hpp:14448
MS_TripleTOF_5600_
MS_TripleTOF_5600_
TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
Definition: cv.hpp:8205
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider...
Definition: cv.hpp:5385
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
Definition: cv.hpp:5412
MS_ProteomeXchange_accession_number_version_number
MS_ProteomeXchange_accession_number_version_number
ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number...
Definition: cv.hpp:6180
MS_anchor_protein
MS_anchor_protein
anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-se...
Definition: cv.hpp:5187
UNIMOD_Arg_loss
UNIMOD_Arg_loss
Arg-loss: Loss of arginine due to transpeptidation.
Definition: cv.hpp:12081
UO_ton
UO_ton
ton: An imperial mass unit which is equivalent to 1,016.046,9088 kilograms, or 2,240 pounds.
Definition: cv.hpp:14907
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_
dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:13317
MS_Lys_C
MS_Lys_C
Lys-C: Endoproteinase Lys-C.
Definition: cv.hpp:4335
MS_amaZon_Speed
MS_amaZon_Speed
amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI,...
Definition: cv.hpp:7353
MS_API_165
MS_API_165
API 165: Applied Biosystems/MDS SCIEX API 165 MS.
Definition: cv.hpp:8214
UNIMOD_Hex_1_HexNAc_1_NeuGc_3_
UNIMOD_Hex_1_HexNAc_1_NeuGc_3_
Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
Definition: cv.hpp:13077
UNIMOD_Lys__Val
UNIMOD_Lys__Val
Lys->Val: Lys->Val substitution.
Definition: cv.hpp:11670
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc —OR— Hex(6) HexNAc(3) NeuAc.
Definition: cv.hpp:12687
MS_secondary_isotope_peak
MS_secondary_isotope_peak
secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak....
Definition: cv.hpp:8547
MS_64_bit_integer
MS_64_bit_integer
64-bit integer: Signed 64-bit little-endian integer.
Definition: cv.hpp:2172
UNIMOD_glycidamide
UNIMOD_glycidamide
glycidamide: Glycidamide adduct.
Definition: cv.hpp:11316
UNIMOD_Carbamidomethyl
UNIMOD_Carbamidomethyl
Carbamidomethyl: Iodoacetamide derivative.
Definition: cv.hpp:9381
MS_nth_generation_product_ion_spectrum
MS_nth_generation_product_ion_spectrum
nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designe...
Definition: cv.hpp:2370
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the princip...
Definition: cv.hpp:534
UO_megaHertz
UO_megaHertz
megaHertz: A frequency unit which is equal to one million hertz or 10^[6] V.
Definition: cv.hpp:14772
MS_max_fold_change
MS_max_fold_change
max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e....
Definition: cv.hpp:5973
UNIMOD_Xle__Tyr
UNIMOD_Xle__Tyr
Xle->Tyr: Leu/Ile->Tyr substitution.
Definition: cv.hpp:11643
UNIMOD_Deoxyhypusine
UNIMOD_Deoxyhypusine
Deoxyhypusine: Deoxyhypusine.
Definition: cv.hpp:11379
UO_square_millimeter
UO_square_millimeter
square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
Definition: cv.hpp:14049
MS_surface_enhanced_neat_desorption
MS_surface_enhanced_neat_desorption
surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is ...
Definition: cv.hpp:1371
MS_TOPP_IDFileConverter
MS_TOPP_IDFileConverter
TOPP IDFileConverter: Converts identification engine file formats.
Definition: cv.hpp:6915
MS_SpectrumMill_SPI
MS_SpectrumMill_SPI
SpectrumMill:SPI: SpectrumMill SPI score (%).
Definition: cv.hpp:5118
MS_TRIZAIC_UPLC_nanoTile
MS_TRIZAIC_UPLC_nanoTile
TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
Definition: cv.hpp:5721
UNIMOD_Asn__Glu
UNIMOD_Asn__Glu
Asn->Glu: Asn->Glu substitution.
Definition: cv.hpp:11724
UNIMOD_mTRAQ
UNIMOD_mTRAQ
mTRAQ: MTRAQ light.
Definition: cv.hpp:11052
MS_MaxQuant_sequence_length
MS_MaxQuant_sequence_length
MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
Definition: cv.hpp:6114
UO_gram_per_mole
UO_gram_per_mole
gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element o...
Definition: cv.hpp:14067
MS_scan_polarity
MS_scan_polarity
scan polarity: Relative orientation of the electromagnetic field during the selection and detection o...
Definition: cv.hpp:1992
MS_ProteinScape_input_parameter
MS_ProteinScape_input_parameter
ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
Definition: cv.hpp:6750
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order ...
Definition: cv.hpp:5271
MS_date___time_search_performed_OBSOLETE
MS_date___time_search_performed_OBSOLETE
date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actu...
Definition: cv.hpp:3597
MS_SHA_1
MS_SHA_1
SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Secu...
Definition: cv.hpp:2316
MS_membrane_separator
MS_membrane_separator
membrane separator: A device to separate carrier molecules from analyte molecules on the basis of eas...
Definition: cv.hpp:465
MS_database_type_nucleotide
MS_database_type_nucleotide
database type nucleotide: Database contains nucleic acid sequences.
Definition: cv.hpp:3696
MS_ProteomeDiscoverer_Peptide_NTerminus
MS_ProteomeDiscoverer_Peptide_NTerminus
ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used duri...
Definition: cv.hpp:5451
UNIMOD_Hex_1_HexNAc_2_dHex_2_
UNIMOD_Hex_1_HexNAc_2_dHex_2_
Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
Definition: cv.hpp:9693
UNIMOD_Dehydro
UNIMOD_Dehydro
Dehydro: Half of a disulfide bridge.
Definition: cv.hpp:10053
MS_TSQ_Quantum_Ultra
MS_TSQ_Quantum_Ultra
TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
Definition: cv.hpp:2922
UNIMOD_CLIP_TRAQ_2
UNIMOD_CLIP_TRAQ_2
CLIP_TRAQ_2: CLIP_TRAQ_2.
Definition: cv.hpp:10356
MS_translation_table
MS_translation_table
translation table: The translation table used to translate the nucleotides to amino acids.
Definition: cv.hpp:3573
MS_MassHunter_Easy_Access
MS_MassHunter_Easy_Access
MassHunter Easy Access: Software for open access data acquisition.
Definition: cv.hpp:2706
UNIMOD_Val__Arg
UNIMOD_Val__Arg
Val->Arg: Val->Arg substitution.
Definition: cv.hpp:11910
UO_radiant_intensity_unit
UO_radiant_intensity_unit
radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiat...
Definition: cv.hpp:14274
MS_source
MS_source
source: Terms to describe the source.
Definition: cv.hpp:1968
MS_buffer_gas
MS_buffer_gas
buffer gas: An inert gas used for collisional deactivation of internally excited ions.
Definition: cv.hpp:1809
MS_database_UniProtKB_TrEMBL
MS_database_UniProtKB_TrEMBL
database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
Definition: cv.hpp:6630
MS_DiLeu_quantitation_analysis
MS_DiLeu_quantitation_analysis
DiLeu quantitation analysis: Quantification analysis using the amine-reactive dimethyl leucine (DiLeu...
Definition: cv.hpp:8706
UO_microgram_per_milliliter
UO_microgram_per_milliliter
microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divid...
Definition: cv.hpp:14619
MS_retention_time_window_upper_offset
MS_retention_time_window_upper_offset
retention time window upper offset: The extent of the retention time window in time units above the t...
Definition: cv.hpp:3459
UNIMOD_Label_13C_9__Phospho
UNIMOD_Label_13C_9__Phospho
Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
Definition: cv.hpp:9732
MS_first_stability_region
MS_first_stability_region
first stability region: The region of a Mathieu stability diagram closest to the origin....
Definition: cv.hpp:1488
MS_DLI
MS_DLI
DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray ...
Definition: cv.hpp:1191
MS_MALDI_Solutions_LC_MALDI
MS_MALDI_Solutions_LC_MALDI
MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
Definition: cv.hpp:7593
MS_generic_experimental_condition
MS_generic_experimental_condition
generic experimental condition: The experimental condition is given in the value of this term.
Definition: cv.hpp:5856
UNIMOD_Biotin_HPDP
UNIMOD_Biotin_HPDP
Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
Definition: cv.hpp:9876
MS_PSM_level_identification_statistic
MS_PSM_level_identification_statistic
PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.
Definition: cv.hpp:7491
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge...
Definition: cv.hpp:5286
UNIMOD_dHex_2_Hex_2_HexA_1_
UNIMOD_dHex_2_Hex_2_HexA_1_
dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
Definition: cv.hpp:12834
UNIMOD_Gly_loss_Amide
UNIMOD_Gly_loss_Amide
Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
Definition: cv.hpp:10971
UNIMOD_Diphthamide
UNIMOD_Diphthamide
Diphthamide: Diphthamide.
Definition: cv.hpp:10056
MS_PSM_level_result_list_attribute
MS_PSM_level_result_list_attribute
PSM-level result list attribute: General property of the list of all PSMs.
Definition: cv.hpp:8556
UNIMOD_Ala__Thr
UNIMOD_Ala__Thr
Ala->Thr: Ala->Thr substitution.
Definition: cv.hpp:10401
MS_source_interface_manufacturer
MS_source_interface_manufacturer
source interface manufacturer: The source interface manufacturer.
Definition: cv.hpp:6282
MS_ABI
MS_ABI
ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
Definition: cv.hpp:2088
MS_ProteinProspector_expectation_value
MS_ProteinProspector_expectation_value
ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
Definition: cv.hpp:6582
UNIMOD_Phe__Cys
UNIMOD_Phe__Cys
Phe->Cys: Phe->Cys substitution.
Definition: cv.hpp:10479
MS_cross_linking_score
MS_cross_linking_score
cross-linking score: Cross-linking scoring value.
Definition: cv.hpp:7986
MS_single_protein_identification_statistic
MS_single_protein_identification_statistic
single protein identification statistic: Results specific for one protein as part of a protein ambigu...
Definition: cv.hpp:3807
MS_frag__c_ion___H2O
MS_frag__c_ion___H2O
frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
Definition: cv.hpp:4950
MS_DB_PI_filter_maximum
MS_DB_PI_filter_maximum
DB PI filter maximum: Maximum value of isoelectric point filter.
Definition: cv.hpp:4044
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measu...
Definition: cv.hpp:5322
UNIMOD_Ser__Ala
UNIMOD_Ser__Ala
Ser->Ala: Ser->Ala substitution.
Definition: cv.hpp:10698
MS_MetaMorpheus
MS_MetaMorpheus
MetaMorpheus: MetaMorpheus search engine.
Definition: cv.hpp:8901
UNIMOD_Trp__Asn
UNIMOD_Trp__Asn
Trp->Asn: Trp->Asn substitution.
Definition: cv.hpp:11946
MS_Greazy
MS_Greazy
Greazy: Open-source software for automated phospholipid tandem mass spectrometry identification.
Definition: cv.hpp:9333
UO_lumen
UO_lumen
lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point s...
Definition: cv.hpp:14157
UO_microliter
UO_microliter
microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
Definition: cv.hpp:14106
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc —OR— Hex HexNAc(3) dHex(2) Kdn.
Definition: cv.hpp:13104
UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_
UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_
dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
Definition: cv.hpp:12747
MS_Sequence_database_filter_types
MS_Sequence_database_filter_types
Sequence database filter types: Filter types which are used to filter a sequence database.
Definition: cv.hpp:4938
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in...
Definition: cv.hpp:5358
MS_sector_mass_spectrometer_OBSOLETE
MS_sector_mass_spectrometer_OBSOLETE
sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z sele...
Definition: cv.hpp:1464
UNIMOD_Hex_1_NeuGc_1_
UNIMOD_Hex_1_NeuGc_1_
Hex(1)NeuGc(1): Hex NeuGc.
Definition: cv.hpp:12381
MS_MS_GF_DeNovoScore
MS_MS_GF_DeNovoScore
MS-GF:DeNovoScore: MS-GF de novo score.
Definition: cv.hpp:6600
MS_TraML_format
MS_TraML_format
TraML format: The TraML format for transitions in SRM from the PSI. File extension '....
Definition: cv.hpp:7683
MS_PIA_protein_inference_scoring
MS_PIA_protein_inference_scoring
PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
Definition: cv.hpp:7641
MS_pep_FDR_threshold
MS_pep_FDR_threshold
pep:FDR threshold: False-discovery rate threshold for peptides.
Definition: cv.hpp:4743
UNIMOD_NO_SMX_SIMD
UNIMOD_NO_SMX_SIMD
NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
Definition: cv.hpp:10896
MS_SEQUEST_sort_by_XCorr
MS_SEQUEST_sort_by_XCorr
SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
Definition: cv.hpp:3717
UNIMOD_Hex_4_HexNAc_5_Sulf_1_
UNIMOD_Hex_4_HexNAc_5_Sulf_1_
Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
Definition: cv.hpp:12624
UNIMOD_CarbamidomethylDTT
UNIMOD_CarbamidomethylDTT
CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
Definition: cv.hpp:11064
MS_CLINPROT_micro
MS_CLINPROT_micro
CLINPROT micro: Bruker CLINPROT micro software.
Definition: cv.hpp:2796
PEFF_GeneralComment
PEFF_GeneralComment
GeneralComment: PEFF file general comment.
Definition: cv.hpp:168
UNIMOD_Hex_3_HexNAc_4_Pent_1_
UNIMOD_Hex_3_HexNAc_4_Pent_1_
Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:12492
MS_apexControl
MS_apexControl
apexControl: Bruker software for data acquisition.
Definition: cv.hpp:2787
MS_Original_data
MS_Original_data
Original data: One dataset is not a reanalysis of previously published data.
Definition: cv.hpp:9027
UNIMOD_Diiodo
UNIMOD_Diiodo
Diiodo: Di-Iodination.
Definition: cv.hpp:9624
MS_Other_type_file_URI
MS_Other_type_file_URI
Other type file URI: URI of one file labeled as 'Other', associated to one PX submission.
Definition: cv.hpp:8976
MS_postprocessing_software
MS_postprocessing_software
postprocessing software: Postprocessing software.
Definition: cv.hpp:7692
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_
dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3) —OR— Hex(4) HexNAc(2) dHex(2) NeuAc.
Definition: cv.hpp:12561
UNIMOD_Asp__Pro
UNIMOD_Asp__Pro
Asp->Pro: Asp->Pro substitution.
Definition: cv.hpp:11472
MS_Experiment_additional_parameter
MS_Experiment_additional_parameter
Experiment additional parameter: Root node for terms relating to the description of an Experiment in ...
Definition: cv.hpp:8955
MS_HCTcontrol
MS_HCTcontrol
HCTcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2844
MS_____BD__
MS_____BD__
(?=[BD]): Regular expression for Asp-N.
Definition: cv.hpp:4239
MS_constant_OBSOLETE
MS_constant_OBSOLETE
constant: When resolution is constant with respect to m/z.
Definition: cv.hpp:579
UO_liter
UO_liter
liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3],...
Definition: cv.hpp:14100
MS_peptide_consensus_RT
MS_peptide_consensus_RT
peptide consensus RT: Peptide consensus retention time.
Definition: cv.hpp:6642
MS_sampled_noise_baseline_array
MS_sampled_noise_baseline_array
sampled noise baseline array: A data array of baseline intensity values (the intensity in the absence...
Definition: cv.hpp:8655
MS_TSQ_7000
MS_TSQ_7000
TSQ 7000: ThermoFinnigan TSQ 7000 MS.
Definition: cv.hpp:2916
UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_
UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_
dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:12690
UNIMOD_Deamidated_18O_1_
UNIMOD_Deamidated_18O_1_
Deamidated:18O(1): Deamidation in presence of O18.
Definition: cv.hpp:10038
MS_frag__y_ion___H2O
MS_frag__y_ion___H2O
frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
Definition: cv.hpp:4095
MS_unmapped_peptide
MS_unmapped_peptide
unmapped peptide: Within the context of a proteogenomics approach, a peptide sequence that has not be...
Definition: cv.hpp:8640
UNIMOD_Xle__Lys
UNIMOD_Xle__Lys
Xle->Lys: Leu/Ile->Lys substitution.
Definition: cv.hpp:10536
MS_enium_ion_OBSOLETE
MS_enium_ion_OBSOLETE
enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is C...
Definition: cv.hpp:1662
UNIMOD_Galactosyl
UNIMOD_Galactosyl
Galactosyl: Gluconoylation.
Definition: cv.hpp:11103
UO_gram_per_cubic_centimeter
UO_gram_per_cubic_centimeter
gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided b...
Definition: cv.hpp:14055
MS_ICPL_reagent_0
MS_ICPL_reagent_0
ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
Definition: cv.hpp:8274
MS_ion_optics_type
MS_ion_optics_type
ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectromete...
Definition: cv.hpp:2445
MS_Triple_Quad_6500_
MS_Triple_Quad_6500_
Triple Quad 6500+: SCIEX Triple Quad 6500+.
Definition: cv.hpp:8238
MS_Byonic_Protein_LogProb
MS_Byonic_Protein_LogProb
Byonic:Protein LogProb: The log p-value of the protein.
Definition: cv.hpp:7248
MS_ProteinExtractor_Score
MS_ProteinExtractor_Score
ProteinExtractor:Score: The score calculated by ProteinExtractor.
Definition: cv.hpp:4926
MS_TopPIC_proteoform_level_FDR
MS_TopPIC_proteoform_level_FDR
TopPIC:proteoform-level FDR: TopPIC proteoform-level FDR.
Definition: cv.hpp:9213
MS_database_type_amino_acid
MS_database_type_amino_acid
database type amino acid: Database contains amino acid sequences.
Definition: cv.hpp:3693
UO_ounce
UO_ounce
ounce: An imperial mass unit which is equivalent to 28.349,523,125 grams, or 1/16 of 1 pound.
Definition: cv.hpp:14892
MS_PIA_protein_inference
MS_PIA_protein_inference
PIA:protein inference: The used algorithm for the protein inference using PIA.
Definition: cv.hpp:7635
UNIMOD_Xlink_BuUrBu_214_
UNIMOD_Xlink_BuUrBu_214_
Xlink:BuUrBu[214]: Water quenched monolink of BuUrBu crosslinker.
Definition: cv.hpp:13536
UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_
UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_
dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
Definition: cv.hpp:13296
PEFF_SeqStatus
PEFF_SeqStatus
SeqStatus: Sequence Status. Complete or Fragment.
Definition: cv.hpp:219
UNIMOD_Pro__Cys
UNIMOD_Pro__Cys
Pro->Cys: Pro->Cys substitution.
Definition: cv.hpp:11751
MS_predicted_isoelectric_point
MS_predicted_isoelectric_point
predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an...
Definition: cv.hpp:3288
MS______KR__
MS______KR__
(?<=[KR]): Regular expression for Trypsin/P.
Definition: cv.hpp:4425
UNIMOD_2_hydroxyisobutyrylation
UNIMOD_2_hydroxyisobutyrylation
2-hydroxyisobutyrylation: 2-hydroxyisobutyrylation.
Definition: cv.hpp:13485
MS_Bruker_Daltonics_esquire_series
MS_Bruker_Daltonics_esquire_series
Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
Definition: cv.hpp:5004
UNIMOD_Myristoleyl
UNIMOD_Myristoleyl
Myristoleyl: (cis-delta 5)-tetradecaenoyl.
Definition: cv.hpp:9630
MS_NH3_neutral_loss_OBSOLETE
MS_NH3_neutral_loss_OBSOLETE
NH3 neutral loss: Neutral loss of ammonia.
Definition: cv.hpp:7818
UNIMOD_iTRAQ4plex115
UNIMOD_iTRAQ4plex115
iTRAQ4plex115: Accurate mass for 115.
Definition: cv.hpp:10377
MS_charge_inversion_mass_spectrum
MS_charge_inversion_mass_spectrum
charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a ...
Definition: cv.hpp:1527
MS_cross_linking_attribute
MS_cross_linking_attribute
cross-linking attribute: Cross-linking attribute.
Definition: cv.hpp:7974
UO_micromole_per_litre
UO_micromole_per_litre
micromole per litre: A specific concentration unit which is equal to 1 micromole in a given volume of...
Definition: cv.hpp:14802
MS_mass_resolution
MS_mass_resolution
mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley betwee...
Definition: cv.hpp:294
MS_detector_potential
MS_detector_potential
detector potential: Detector potential difference in volts.
Definition: cv.hpp:7266
MS_plasma_desorption_ionization
MS_plasma_desorption_ionization
plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ioni...
Definition: cv.hpp:1773
MS_point_collector
MS_point_collector
point collector: A detector in which the ion beam is focused onto a point and the individual ions arr...
Definition: cv.hpp:1623
UNIMOD_Cy3b_maleimide
UNIMOD_Cy3b_maleimide
Cy3b-maleimide: Fluorescent dye that labels cysteines.
Definition: cv.hpp:10968
MS_zoom_scan
MS_zoom_scan
zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achi...
Definition: cv.hpp:2094
MS_decoy_DB_from_IPI_cow_OBSOLETE
MS_decoy_DB_from_IPI_cow_OBSOLETE
decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
Definition: cv.hpp:4299
UNIMOD_Label_13C_6_15N_4_
UNIMOD_Label_13C_6_15N_4_
Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
Definition: cv.hpp:9828
UNIMOD_FNEM
UNIMOD_FNEM
FNEM: Fluorescein-5-maleimide.
Definition: cv.hpp:10338
MS_AXIMA_CFR_plus
MS_AXIMA_CFR_plus
AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
Definition: cv.hpp:2487
MS_glow_discharge_ionization
MS_glow_discharge_ionization
glow discharge ionization: The formation of ions in the gas phase and from solid samples at the catho...
Definition: cv.hpp:1248
MS_binary_data_compression_type
MS_binary_data_compression_type
binary data compression type: Compression Type.
Definition: cv.hpp:2325
UNIMOD_Tyr__Dha
UNIMOD_Tyr__Dha
Tyr->Dha: Dehydroalanine (from Tyrosine).
Definition: cv.hpp:10119