ProteoWizard
pwiz
data
msdata
ChromatogramListBase.hpp
Go to the documentation of this file.
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//
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// $Id$
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//
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//
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// Original author: Darren Kessner <darren@proteowizard.org>
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//
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// Copyright 2009 Spielberg Family Center for Applied Proteomics
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// Cedars-Sinai Medical Center, Los Angeles, California 90048
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//
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// Licensed under the Apache License, Version 2.0 (the "License");
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// you may not use this file except in compliance with the License.
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// You may obtain a copy of the License at
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//
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// http://www.apache.org/licenses/LICENSE-2.0
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//
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// Unless required by applicable law or agreed to in writing, software
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// distributed under the License is distributed on an "AS IS" BASIS,
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// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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// See the License for the specific language governing permissions and
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// limitations under the License.
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//
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#ifndef _CHROMATOGRAMLISTBASE_HPP_
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#define _CHROMATOGRAMLISTBASE_HPP_
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#include "
pwiz/data/msdata/MSData.hpp
"
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#include <stdexcept>
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namespace
pwiz
{
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namespace
msdata {
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/// common functionality for base ChromatogramList implementations
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class
PWIZ_API_DECL
ChromatogramListBase
:
public
ChromatogramList
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{
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public
:
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/// implementation of ChromatogramList
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virtual
const
boost::shared_ptr<const DataProcessing>
dataProcessingPtr
()
const
{
return
dp_;}
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/// set DataProcessing
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virtual
void
setDataProcessingPtr
(
DataProcessingPtr
dp) {dp_ = dp;}
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const
char
*
polarityStringForFilter
(CVID polarityType)
const
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{
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return
(polarityType ==
MS_negative_scan
) ?
"- "
:
""
;
// For backward compatibility, let assumptions about postive ion mode remain
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}
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protected
:
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DataProcessingPtr
dp_
;
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};
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}
// namespace msdata
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}
// namespace pwiz
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#endif // _CHROMATOGRAMLISTBASE_HPP_
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pwiz::msdata::ChromatogramListBase::setDataProcessingPtr
virtual void setDataProcessingPtr(DataProcessingPtr dp)
set DataProcessing
Definition:
ChromatogramListBase.hpp:45
pwiz
Definition:
ChromatogramList_Filter.hpp:36
pwiz::msdata::ChromatogramListBase::polarityStringForFilter
const char * polarityStringForFilter(CVID polarityType) const
Definition:
ChromatogramListBase.hpp:47
pwiz::msdata::ChromatogramListBase::dataProcessingPtr
virtual const boost::shared_ptr< const DataProcessing > dataProcessingPtr() const
implementation of ChromatogramList
Definition:
ChromatogramListBase.hpp:42
MSData.hpp
pwiz::msdata::ChromatogramListBase
common functionality for base ChromatogramList implementations
Definition:
ChromatogramListBase.hpp:38
PWIZ_API_DECL
#define PWIZ_API_DECL
Definition:
Export.hpp:32
MS_negative_scan
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition:
cv.hpp:735
pwiz::msdata::ChromatogramListBase::dp_
DataProcessingPtr dp_
Definition:
ChromatogramListBase.hpp:54
pwiz::msdata::DataProcessingPtr
boost::shared_ptr< DataProcessing > DataProcessingPtr
Definition:
MSData.hpp:288
pwiz::msdata::ChromatogramList
Interface for accessing chromatograms, which may be stored in memory or backed by a data file (RAW,...
Definition:
MSData.hpp:757
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