libSBML Perl API
libSBML 5.17.2 Perl API
- s -
saveReferencedElement() :
Deletion
,
Port
,
Replacing
,
SBaseRef
SBaseExtensionPoint() :
SBaseExtensionPoint
SBasePluginCreator() :
SBasePluginCreator< SBasePluginType, SBMLExtensionType >
SBasePluginCreatorBase() :
SBasePluginCreatorBase
SBaseRef() :
SBaseRef
SBMLConverter() :
SBMLConverter
SBMLDocument() :
SBMLDocument
SBMLDocumentPlugin() :
SBMLDocumentPlugin
SBMLDocumentPluginNotRequired() :
SBMLDocumentPluginNotRequired
SBMLError() :
SBMLError
SBMLExtension() :
SBMLExtension
SBMLExtensionException() :
SBMLExtensionException
SBMLExtensionNamespaces() :
SBMLExtensionNamespaces< SBMLExtensionType >
SBMLExtensionRegister() :
SBMLExtensionRegister< SBMLExtensionType >
SBMLFileResolver() :
SBMLFileResolver
SBMLFunctionDefinitionConverter() :
SBMLFunctionDefinitionConverter
SBMLIdConverter() :
SBMLIdConverter
SBMLInferUnitsConverter() :
SBMLInferUnitsConverter
SBMLInitialAssignmentConverter() :
SBMLInitialAssignmentConverter
SBMLInternalValidator() :
SBMLInternalValidator
SBMLLevel1Version1Converter() :
SBMLLevel1Version1Converter
SBMLLevelVersionConverter() :
SBMLLevelVersionConverter
SBMLLocalParameterConverter() :
SBMLLocalParameterConverter
SBMLNamespaces() :
SBMLNamespaces
SBMLRateOfConverter() :
SBMLRateOfConverter
SBMLReactionConverter() :
SBMLReactionConverter
SBMLReader() :
SBMLReader
SBMLResolver() :
SBMLResolver
SBMLRuleConverter() :
SBMLRuleConverter
SBMLStripPackageConverter() :
SBMLStripPackageConverter
SBMLUnitsConverter() :
SBMLUnitsConverter
SBMLUri() :
SBMLUri
SBMLValidator() :
SBMLValidator
SBMLWriter() :
SBMLWriter
setAbsoluteValue() :
RelAbsVector
setActiveObjective() :
ListOfObjectives
setActiveObjectiveId() :
FbcModelPlugin
setAdditionalDirs() :
SBMLFileResolver
setAlpha() :
ColorDefinition
setAnnotation() :
Model
,
SBase
,
SpeciesReference
setApplicableValidators() :
SBMLInternalValidator
setAreaUnits() :
Model
setAssociatedSpecies() :
GeneProduct
setAssociation() :
GeneAssociation
,
GeneProductAssociation
setAttributes() :
XMLToken
setAutoIndent() :
XMLOutputStream
setBackgroundColor() :
DefaultValues
,
RenderInformationBase
setBasePoint1() :
CubicBezier
,
RenderCubicBezier
setBasePoint1_x() :
RenderCubicBezier
setBasePoint1_X() :
RenderCubicBezier
setBasePoint1_Y() :
RenderCubicBezier
setBasePoint1_y() :
RenderCubicBezier
setBasePoint1_z() :
RenderCubicBezier
setBasePoint1_Z() :
RenderCubicBezier
setBasePoint2() :
CubicBezier
,
RenderCubicBezier
setBasePoint2_X() :
RenderCubicBezier
setBasePoint2_x() :
RenderCubicBezier
setBasePoint2_y() :
RenderCubicBezier
setBasePoint2_Y() :
RenderCubicBezier
setBasePoint2_z() :
RenderCubicBezier
setBasePoint2_Z() :
RenderCubicBezier
setBindingSite1() :
InSpeciesTypeBond
setBindingSite2() :
InSpeciesTypeBond
setBindingStatus() :
OutwardBindingSite
setBiologicalQualifierType() :
CVTerm
setBlue() :
ColorDefinition
setBoolValue() :
ConversionOption
,
ConversionProperties
setBoundaryCondition() :
Species
setBoundingBox() :
GraphicalObject
,
LineEnding
setBounds() :
Dimensions
setCenter() :
RadialGradient
setCenter2D() :
Ellipse
setCenter3D() :
Ellipse
setCharacter() :
ASTNode
setCharacters() :
XMLToken
setCharge() :
FbcSpeciesPlugin
,
Species
setChemicalFormula() :
FbcSpeciesPlugin
setClass() :
ASTNode
setCoefficient() :
FluxObjective
setColorValue() :
ColorDefinition
setColumn() :
XMLError
setCompartment() :
CompartmentReference
,
MultiSpeciesType
,
QualitativeSpecies
,
Reaction
,
Species
setCompartmentId() :
CompartmentGlyph
setCompartmentReference() :
MultiSimpleSpeciesReferencePlugin
,
SpeciesTypeInstance
setCompartmentType() :
Compartment
,
MultiCompartmentPlugin
setComponent() :
OutwardBindingSite
,
SpeciesFeature
,
SpeciesTypeComponentIndex
,
SubListOfSpeciesFeatures
setConsistencyChecks() :
SBMLDocument
,
SBMLInternalValidator
setConsistencyChecksForConversion() :
SBMLDocument
,
SBMLInternalValidator
setConstant() :
Compartment
,
Parameter
,
QualitativeSpecies
,
Species
,
SpeciesReference
setConversionFactor() :
Model
,
ReplacedElement
,
Species
setConversionValidators() :
SBMLInternalValidator
setCoordinate() :
RelAbsVector
setCoordinates() :
Image
,
LinearGradient
,
RadialGradient
,
Rectangle
,
RenderPoint
,
Text
setCoordinatesAndSize() :
Rectangle
setCreatedDate() :
ModelHistory
setCurve() :
GeneralGlyph
,
ReactionGlyph
,
ReferenceGlyph
,
SpeciesReferenceGlyph
setCX() :
Ellipse
setCx() :
RadialGradient
setCY() :
Ellipse
setCy() :
RadialGradient
setCZ() :
Ellipse
setCz() :
RadialGradient
setDashArray() :
GraphicalPrimitive1D
setDashByIndex() :
GraphicalPrimitive1D
setDateAsString() :
Date
setDay() :
Date
setDefault_z() :
DefaultValues
setDefaultTerm() :
ListOfFunctionTerms
,
Transition
setDefaultValues() :
ListOfGlobalRenderInformation
,
ListOfLocalRenderInformation
setDelay() :
Event
setDeletion() :
ReplacedElement
setDenominator() :
SpeciesReference
setDepth() :
BoundingBox
,
Dimensions
setDescription() :
ConversionOption
setDimensions() :
BoundingBox
,
Image
,
Layout
setDivider() :
CompModelPlugin
setDocument() :
SBMLConverter
,
SBMLRateOfConverter
,
SBMLReactionConverter
,
SBMLValidator
setDoubleValue() :
ConversionOption
,
ConversionProperties
setElementName() :
FbcAssociation
,
Point
setElementNamespace() :
SBasePlugin
setElementText() :
SBase
setEmail() :
ModelCreator
setEnabled() :
SBMLExtension
,
SBMLExtensionRegistry
setEnableRotationalMapping() :
DefaultValues
,
LineEnding
setEnd() :
LineSegment
,
XMLToken
setEndHead() :
DefaultValues
,
RenderCurve
,
RenderGroup
setEOF() :
XMLToken
setErrorLog() :
XMLInputStream
setExponent() :
Unit
setExtentConversionFactor() :
Submodel
setExtentUnits() :
Model
setFamilyName() :
ModelCreator
setFast() :
Reaction
setFill() :
DefaultValues
,
GraphicalPrimitive2D
setFillColor() :
GraphicalPrimitive2D
setFillRule() :
DefaultValues
,
GraphicalPrimitive2D
setFloatValue() :
ConversionOption
,
ConversionProperties
setFocalPoint() :
RadialGradient
setFontFamily() :
DefaultValues
,
RenderGroup
,
Text
setFontSize() :
DefaultValues
,
RenderGroup
,
Text
setFontStyle() :
DefaultValues
,
RenderGroup
,
Text
setFontWeight() :
DefaultValues
,
RenderGroup
,
Text
setFormula() :
KineticLaw
,
Rule
setFx() :
RadialGradient
setFy() :
RadialGradient
setFz() :
RadialGradient
setGeneProduct() :
GeneProductRef
setGeneProductAssociation() :
FbcReactionPlugin
setGivenName() :
ModelCreator
setGlyphId() :
ReferenceGlyph
setGraphicalObjectId() :
TextGlyph
setGreen() :
ColorDefinition
setGroup() :
LineEnding
,
Style
setHasOnlySubstanceUnits() :
Species
setHeight() :
BoundingBox
,
Dimensions
,
Image
,
Rectangle
setHour() :
Date
setHoursOffset() :
Date
setHref() :
Image
setId() :
ASTNode
,
BoundingBox
,
ColorDefinition
,
Compartment
,
CompartmentReference
,
CompartmentType
,
Deletion
,
Dimensions
,
Event
,
ExternalModelDefinition
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
GeneAssociation
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GradientBase
,
GraphicalObject
,
GraphicalPrimitive1D
,
Group
,
Image
,
Input
,
InSpeciesTypeBond
,
Layout
,
LineEnding
,
ListOfMembers
,
Member
,
Model
,
MultiSpeciesType
,
Objective
,
Output
,
OutwardBindingSite
,
Parameter
,
Point
,
Port
,
PossibleSpeciesFeatureValue
,
QualitativeSpecies
,
Reaction
,
RenderInformationBase
,
SBase
,
SimpleSpeciesReference
,
Species
,
SpeciesFeature
,
SpeciesFeatureType
,
SpeciesType
,
SpeciesTypeComponentIndex
,
SpeciesTypeComponentMapInProduct
,
SpeciesTypeInstance
,
Style
,
SubListOfSpeciesFeatures
,
Submodel
,
Transition
,
UnitDefinition
setIdAttribute() :
SBase
setIdentifyingParent() :
SpeciesTypeComponentIndex
setIdList() :
LocalStyle
setIdRef() :
Member
,
SBaseRef
setImageReference() :
Image
setInitialAmount() :
Species
setInitialConcentration() :
Species
setInitialLevel() :
QualitativeSpecies
setInitialValue() :
Trigger
setIntValue() :
ConversionOption
,
ConversionProperties
setIsType() :
MultiCompartmentPlugin
setKey() :
ConversionOption
setKind() :
Group
,
Unit
setKineticLaw() :
Reaction
setL1TypeCode() :
Rule
setLabel() :
GeneProduct
setLengthUnits() :
Model
setLevelAndVersion() :
SBMLDocument
setLibraryName() :
XMLOutputStream
setLibraryVersion() :
XMLOutputStream
setLine() :
XMLError
setLinearGradient_x1() :
DefaultValues
setLinearGradient_x2() :
DefaultValues
setLinearGradient_y1() :
DefaultValues
setLinearGradient_y2() :
DefaultValues
setLinearGradient_z1() :
DefaultValues
setLinearGradient_z2() :
DefaultValues
setLocationURI() :
SBMLDocument
setLowerFluxBound() :
FbcReactionPlugin
setMajorVersion() :
ListOfGlobalRenderInformation
,
ListOfLocalRenderInformation
setMath() :
Constraint
,
Delay
,
EventAssignment
,
FunctionDefinition
,
FunctionTerm
,
InitialAssignment
,
KineticLaw
,
Priority
,
Rule
,
StoichiometryMath
,
Trigger
setMatrix() :
Transformation2D
,
Transformation
setMatrix2D() :
Transformation2D
setMaxLevel() :
QualitativeSpecies
setMd5() :
ExternalModelDefinition
setMessage() :
Constraint
setMetaId() :
SBase
setMetaIdRef() :
GraphicalObject
,
Member
,
SBaseRef
setMinorVersion() :
ListOfGlobalRenderInformation
,
ListOfLocalRenderInformation
setMinute() :
Date
setMinutesOffset() :
Date
setModel() :
SBMLDocument
setModelHistory() :
SBase
setModelQualifierType() :
CVTerm
setModelRef() :
ExternalModelDefinition
,
Submodel
setModifiedDate() :
ModelHistory
setMonth() :
Date
setMultiplier() :
Unit
setName() :
ASTNode
,
ColorDefinition
,
Compartment
,
CompartmentReference
,
CompartmentType
,
Deletion
,
Event
,
ExternalModelDefinition
,
FluxBound
,
FluxObjective
,
FunctionDefinition
,
GeneProduct
,
GeneProductAssociation
,
GeneProductRef
,
GradientBase
,
Group
,
Input
,
InSpeciesTypeBond
,
Layout
,
ListOfMembers
,
Member
,
Model
,
ModelCreator
,
MultiSpeciesType
,
Objective
,
Output
,
OutwardBindingSite
,
Parameter
,
Port
,
PossibleSpeciesFeatureValue
,
QualitativeSpecies
,
Reaction
,
RenderInformationBase
,
SBase
,
SimpleSpeciesReference
,
Species
,
SpeciesFeature
,
SpeciesFeatureType
,
SpeciesType
,
SpeciesTypeComponentIndex
,
SpeciesTypeComponentMapInProduct
,
SpeciesTypeInstance
,
Style
,
SubListOfSpeciesFeatures
,
Submodel
,
Transformation
,
Transition
,
UnitDefinition
setNamespaces() :
SBase
,
XMLToken
setNotes() :
SBase
setNumericValue() :
PossibleSpeciesFeatureValue
setObjectRole() :
RenderGraphicalObjectPlugin
setOccur() :
SpeciesFeature
,
SpeciesFeatureType
setOffset() :
GradientStop
,
Unit
setOffsets() :
Point
,
RenderPoint
setOperation() :
FluxBound
setOrder() :
CompartmentGlyph
setOrganisation() :
ModelCreator
setOrganization() :
ModelCreator
setOriginOfTextId() :
TextGlyph
setOutputLevel() :
Output
setOutside() :
Compartment
setPackageRequired() :
SBMLDocument
setPersistent() :
Trigger
setPkgRequired() :
SBMLDocument
setPoint1() :
LinearGradient
setPoint2() :
LinearGradient
setPortRef() :
Port
,
SBaseRef
setPosition() :
BoundingBox
setPriority() :
Event
setProductComponent() :
SpeciesTypeComponentMapInProduct
setProgramName() :
RenderInformationBase
,
SBMLWriter
setProgramVersion() :
RenderInformationBase
,
SBMLWriter
setProperties() :
SBMLConverter
setQualifierType() :
CVTerm
setQualitativeSpecies() :
Input
,
Output
setR() :
RadialGradient
setRadialGradient_cx() :
DefaultValues
setRadialGradient_cy() :
DefaultValues
setRadialGradient_cz() :
DefaultValues
setRadialGradient_fx() :
DefaultValues
setRadialGradient_fy() :
DefaultValues
setRadialGradient_fz() :
DefaultValues
setRadialGradient_r() :
DefaultValues
setRadii() :
Ellipse
,
Rectangle
setRadius() :
RadialGradient
setRadiusX() :
Rectangle
setRadiusY() :
Rectangle
setRatio() :
Ellipse
,
Rectangle
setReactant() :
SpeciesTypeComponentMapInProduct
setReactantComponent() :
SpeciesTypeComponentMapInProduct
setReaction() :
FluxBound
,
FluxObjective
,
GeneAssociation
setReactionId() :
ReactionGlyph
setRed() :
ColorDefinition
setReference() :
Association
setReferenceId() :
GeneralGlyph
,
ReferenceGlyph
setReferenceRenderInformation() :
RenderInformationBase
setReferenceRenderInformationId() :
RenderInformationBase
setRelation() :
SubListOfSpeciesFeatures
setRelativeValue() :
RelAbsVector
setReplacedBy() :
CompSBasePlugin
setRepresentationType() :
MultiASTPlugin
setRequired() :
CompSBMLDocumentPlugin
,
SBMLDocumentPlugin
setResultLevel() :
DefaultTerm
,
FunctionTerm
setReversible() :
Reaction
setRGBA() :
ColorDefinition
setRole() :
ReferenceGlyph
,
SpeciesReferenceGlyph
setRoleList() :
Style
setRX() :
Ellipse
,
Rectangle
setRY() :
Ellipse
,
Rectangle
setSBaseRef() :
SBaseRef
setSBMLNamespaces() :
XMLInputStream
,
XMLOutputStream
setSBOTerm() :
SBase
setScale() :
Unit
setSecond() :
Date
setSeverityOverride() :
XMLErrorLog
setSign() :
Input
setSignOffset() :
Date
setSize() :
Compartment
,
Rectangle
setSource() :
ExternalModelDefinition
setSpatialDimensions() :
Compartment
setSpatialSizeUnits() :
Species
setSpecies() :
SimpleSpeciesReference
setSpeciesFeatureType() :
SpeciesFeature
setSpeciesGlyphId() :
SpeciesReferenceGlyph
setSpeciesId() :
SpeciesGlyph
setSpeciesReference() :
MultiASTPlugin
setSpeciesReferenceId() :
SpeciesReferenceGlyph
setSpeciesType() :
MultiSpeciesPlugin
,
Species
,
SpeciesTypeInstance
setSpreadMethod() :
DefaultValues
,
GradientBase
setStart() :
LineSegment
setStartHead() :
DefaultValues
,
RenderCurve
,
RenderGroup
setStoichiometry() :
SpeciesReference
setStoichiometryMath() :
SpeciesReference
setStopColor() :
GradientStop
setStrict() :
FbcModelPlugin
setStroke() :
DefaultValues
,
GraphicalPrimitive1D
setStrokeDashArray() :
GraphicalPrimitive1D
setStrokeWidth() :
DefaultValues
,
GraphicalPrimitive1D
setStyle() :
ASTNode
setSubmodelRef() :
Replacing
setSubstanceConversionFactor() :
Submodel
setSubstanceUnits() :
KineticLaw
,
Model
,
Species
setSymbol() :
InitialAssignment
setTargetNamespaces() :
ConversionProperties
setText() :
Text
,
TextGlyph
setTextAnchor() :
DefaultValues
,
RenderGroup
,
Text
setThresholdLevel() :
Input
setTimeConversionFactor() :
Submodel
setTimeUnits() :
Event
,
KineticLaw
,
Model
setTransform() :
Transformation
setTransformer() :
CompModelPlugin
setTransitionEffect() :
Input
,
Output
setTrigger() :
Event
setTriple() :
XMLToken
setType() :
Association
,
ASTNode
,
ConversionOption
,
Objective
setTypeList() :
Style
setUnitRef() :
SBaseRef
setUnits() :
ASTNode
,
Compartment
,
Parameter
,
Rule
,
Species
setUpperFluxBound() :
FbcReactionPlugin
setUserData() :
ASTNode
,
ElementFilter
,
SBase
setUseValuesFromTriggerTime() :
Event
setValue() :
ASTNode
,
ColorDefinition
,
ConversionOption
,
ConversionProperties
,
FluxBound
,
Parameter
,
SpeciesFeatureValue
setVariable() :
EventAssignment
,
Rule
setVersion() :
ListOfGlobalRenderInformation
,
ListOfLocalRenderInformation
setVolume() :
Compartment
setVolumeUnits() :
Model
setVTextAnchor() :
DefaultValues
,
RenderGroup
,
Text
setWidth() :
BoundingBox
,
Dimensions
,
Image
,
Rectangle
setWriteComment() :
XMLOutputStream
setWriteTimestamp() :
XMLOutputStream
setX() :
BoundingBox
,
Image
,
Point
,
Rectangle
,
RenderPoint
,
Text
setX1() :
LinearGradient
setX2() :
LinearGradient
setXOffset() :
Point
setY() :
BoundingBox
,
Image
,
Point
,
Rectangle
,
RenderPoint
,
Text
setY1() :
LinearGradient
setY2() :
LinearGradient
setYear() :
Date
setYOffset() :
Point
setZ() :
BoundingBox
,
Image
,
Point
,
Rectangle
,
RenderPoint
,
Text
setZ1() :
LinearGradient
setZ2() :
LinearGradient
setZOffset() :
Point
SimpleSpeciesReference() :
SimpleSpeciesReference
simplify() :
UnitDefinition
size() :
ListOf
,
ListOfSpeciesFeatures
skipPastEnd() :
XMLInputStream
skipText() :
XMLInputStream
Species() :
Species
SpeciesFeature() :
SpeciesFeature
SpeciesFeatureType() :
SpeciesFeatureType
SpeciesFeatureValue() :
SpeciesFeatureValue
SpeciesGlyph() :
SpeciesGlyph
SpeciesReference() :
SpeciesReference
SpeciesReferenceGlyph() :
SpeciesReferenceGlyph
SpeciesType() :
SpeciesType
SpeciesTypeComponentIndex() :
SpeciesTypeComponentIndex
SpeciesTypeComponentMapInProduct() :
SpeciesTypeComponentMapInProduct
SpeciesTypeInstance() :
SpeciesTypeInstance
startElement() :
XMLOutputStream
startEndElement() :
XMLOutputStream
StoichiometryMath() :
StoichiometryMath
straighten() :
CubicBezier
stringToInt() :
SBO
Style() :
Style
SubListOfSpeciesFeatures() :
SubListOfSpeciesFeatures
Submodel() :
Submodel
swapChildren() :
ASTNode
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