Here is a list of all documented class members with links to the class documentation for each member:
- a -
- ABORT
: ErrorHandler
- Add()
: CigarRoller
- add()
: NonOverlapRegionPos
, NonOverlapRegions
, SamCoordOutput
, SamReferenceInfo
- addComment()
: SamFileHeader
- addEntry()
: PileupElement
, PileupElementBaseQual
- addError()
: GlfStatus
, SamValidationErrors
, StatGenStatus
- addHD()
: SamFileHeader
- addHeader()
: SamFileHeader
- addHeaderLine()
: SamFileHeader
- addIntTag()
: SamRecord
- addKey()
: SamHeaderRecord
- addPG()
: SamFileHeader
- addPosition()
: PosList
- addRecordCopy()
: SamFileHeader
- addRG()
: SamFileHeader
- addSQ()
: SamFileHeader
- addTag()
: SamRecord
- Align()
: GreedyTupleAligner< QueryType, ReferenceType, ReferenceIndex >
- analyze()
: PileupElement
, PileupElementBaseQual
, TestPileupElement
- appendCommentLines()
: SamFileHeader
- appendString()
: SamHeaderRecord
- areEqual()
: BaseUtilities