ReactionNetwork -- a mutable hash table, stores information about a reaction network
Functions and methods returning an object of class ReactionNetwork :
Methods that use an object of class ReactionNetwork :
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conservationEquations(ReactionNetwork), see conservationEquations -- creates the conservation equations of a reaction network
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conservationEquations(ReactionNetwork,Ring), see conservationEquations -- creates the conservation equations of a reaction network
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conservationEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
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createConcentrationRates(ReactionNetwork) (missing documentation)
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createInitialValues(ReactionNetwork) (missing documentation)
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createReactionRates(ReactionNetwork) (missing documentation)
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createRing(ReactionNetwork), see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
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createRing(ReactionNetwork,Ring), see createRing -- creates a ring with generators species concentrations, reaction rates, initial values
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createRing(ReactionNetwork,InexactFieldFamily) (missing documentation)
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glue(List,ReactionNetwork), see glue -- combine two networks
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glue(ReactionNetwork,List), see glue -- combine two networks
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glue(ReactionNetwork,ReactionNetwork), see glue -- combine two networks
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negativeLaplacian(ReactionNetwork), see negativeLaplacian -- Computes the negative of the Laplacian matrix of a Reaction Network.
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negativeUndirectedLaplacian(ReactionNetwork), see negativeUndirectedLaplacian -- Computes the negative of the Laplacian matrix of an undirected graph associated with a Reaction Network.
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negativeWeightedLaplacian(ReactionNetwork), see negativeWeightedLaplacian -- Computes the negative of the weighted Laplacian matrix of a Reaction Network.
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net(ReactionNetwork) (missing documentation)
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reactantMatrix(ReactionNetwork), see reactantMatrix -- Computes the reactants matrix of a Reaction Network.
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reactionMatrix(ReactionNetwork) (missing documentation)
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steadyStateEquations(ReactionNetwork), see steadyStateEquations -- creates steady-state equations of a reaction network
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steadyStateEquations(ReactionNetwork,Ring), see steadyStateEquations -- creates steady-state equations of a reaction network
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steadyStateEquations(ReactionNetwork,InexactFieldFamily) (missing documentation)
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stoichiometricConeKer(ReactionNetwork), see stoichiometricConeKer -- Computes a matrix whose columns are the rays of the cone non-negative kernel of the stoichiometric matrix of a Reaction Network.
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stoichiometricMatrix(ReactionNetwork), see stoichiometricMatrix -- Computes the stoichiometric matrix of a Reaction Network.
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stoichiometricSubspace(ReactionNetwork), see stoichiometricSubspace -- Computes the stoichiometric space of a Reaction Network.
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stoichSubspaceKer(ReactionNetwork), see stoichSubspaceKer -- Computes the kernel of the stoichiometric matrix of a Reaction Network.
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subRandomInitVals(ReactionNetwork) (missing documentation)
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subRandomInitVals(ReactionNetwork,Ring) (missing documentation)
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subRandomReactionRates(ReactionNetwork) (missing documentation)
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subRandomReactionRates(ReactionNetwork,Ring) (missing documentation)
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substitute(ReactionNetwork,List) -- substitute species names in reaction network