Hierarchy For All Packages
Package Hierarchies:- com.actelion.research.calc,
- com.actelion.research.calc.combinatorics,
- com.actelion.research.calc.filter,
- com.actelion.research.calc.geometry,
- com.actelion.research.calc.graph,
- com.actelion.research.calc.histogram,
- com.actelion.research.calc.regression.linear.simple,
- com.actelion.research.calc.statistics.median,
- com.actelion.research.chem,
- com.actelion.research.chem.alignment3d,
- com.actelion.research.chem.conf,
- com.actelion.research.chem.conf.torsionstrain,
- com.actelion.research.chem.contrib,
- com.actelion.research.chem.coords,
- com.actelion.research.chem.descriptor,
- com.actelion.research.chem.descriptor.flexophore,
- com.actelion.research.chem.descriptor.flexophore.calculator,
- com.actelion.research.chem.descriptor.flexophore.completegraphmatcher,
- com.actelion.research.chem.descriptor.flexophore.entity,
- com.actelion.research.chem.descriptor.flexophore.generator,
- com.actelion.research.chem.descriptor.flexophore.redgraph,
- com.actelion.research.chem.descriptor.pharmacophoretree,
- com.actelion.research.chem.dnd,
- com.actelion.research.chem.docking,
- com.actelion.research.chem.docking.scoring,
- com.actelion.research.chem.docking.scoring.chemscore,
- com.actelion.research.chem.docking.scoring.idoscore,
- com.actelion.research.chem.docking.scoring.plp,
- com.actelion.research.chem.forcefield,
- com.actelion.research.chem.forcefield.mmff,
- com.actelion.research.chem.forcefield.mmff.table,
- com.actelion.research.chem.forcefield.mmff.type,
- com.actelion.research.chem.interactionstatistics,
- com.actelion.research.chem.io,
- com.actelion.research.chem.io.pdb.converter,
- com.actelion.research.chem.io.pdb.parser,
- com.actelion.research.chem.mcs,
- com.actelion.research.chem.name,
- com.actelion.research.chem.optimization,
- com.actelion.research.chem.phesa,
- com.actelion.research.chem.phesa.pharmacophore,
- com.actelion.research.chem.phesaflex,
- com.actelion.research.chem.potentialenergy,
- com.actelion.research.chem.prediction,
- com.actelion.research.chem.properties.complexity,
- com.actelion.research.chem.properties.fractaldimension,
- com.actelion.research.chem.reaction,
- com.actelion.research.chem.shredder,
- com.actelion.research.gui,
- com.actelion.research.gui.clipboard,
- com.actelion.research.gui.clipboard.external,
- com.actelion.research.gui.dnd,
- com.actelion.research.gui.hidpi,
- com.actelion.research.gui.wmf,
- com.actelion.research.io,
- com.actelion.research.jfx.dataformat,
- com.actelion.research.jfx.gui,
- com.actelion.research.jfx.gui.chem,
- com.actelion.research.jfx.gui.misc,
- com.actelion.research.share.gui,
- com.actelion.research.share.gui.editor,
- com.actelion.research.share.gui.editor.actions,
- com.actelion.research.share.gui.editor.chem,
- com.actelion.research.share.gui.editor.dialogs,
- com.actelion.research.share.gui.editor.geom,
- com.actelion.research.share.gui.editor.io,
- com.actelion.research.share.gui.editor.listeners,
- com.actelion.research.util,
- com.actelion.research.util.concurrent,
- com.actelion.research.util.convert,
- com.actelion.research.util.datamodel,
- com.actelion.research.util.datamodel.table,
- com.actelion.research.util.graph.complete,
- com.actelion.research.util.hash,
- org.openmolecules.chem.conf.gen,
- org.openmolecules.chem.conf.so
Class Hierarchy
- java.lang.Object
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
- java.util.AbstractList<E> (implements java.util.List<E>)
- java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
- com.actelion.research.chem.DrawingObjectList
- com.actelion.research.chem.coords.InventorDefaultTemplateList
- java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
- java.util.AbstractSet<E> (implements java.util.Set<E>)
- java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
- com.actelion.research.chem.conf.ConformerSet
- java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
- java.util.AbstractList<E> (implements java.util.List<E>)
- com.actelion.research.chem.AbstractDepictor
- com.actelion.research.chem.Depictor
- com.actelion.research.chem.Depictor2D
- com.actelion.research.jfx.gui.chem.JFXCanvasDepictor
- com.actelion.research.chem.SVGDepictor
- com.actelion.research.chem.AbstractDepictor.DepictorDot
- com.actelion.research.chem.AbstractDepictor.DepictorLine
- com.actelion.research.chem.descriptor.AbstractDescriptorHandlerFP<U> (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.descriptor.DescriptorHandlerFFP512
- com.actelion.research.chem.descriptor.DescriptorHandlerHashedCFp
- com.actelion.research.chem.descriptor.DescriptorHandlerPFP512 (implements com.actelion.research.chem.descriptor.DescriptorConstants)
- com.actelion.research.chem.descriptor.AbstractDescriptorHandlerLongFP<U> (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.descriptor.DescriptorHandlerLongCFP
- com.actelion.research.chem.descriptor.DescriptorHandlerLongFFP512
- com.actelion.research.chem.descriptor.DescriptorHandlerLongPFP512 (implements com.actelion.research.chem.descriptor.DescriptorConstants)
- com.actelion.research.chem.descriptor.DescriptorHandlerReactionFP
- com.actelion.research.chem.AbstractDrawingObject
- com.actelion.research.chem.reaction.ReactionArrow
- com.actelion.research.chem.TextDrawingObject
- com.actelion.research.share.gui.editor.chem.AbstractExtendedDepictor<T,C>
- com.actelion.research.chem.forcefield.AbstractForceField (implements com.actelion.research.chem.forcefield.ForceField)
- com.actelion.research.chem.forcefield.mmff.ForceFieldMMFF94
- java.util.AbstractMap<K,V> (implements java.util.Map<K,V>)
- java.util.concurrent.ConcurrentHashMap<K,V> (implements java.util.concurrent.ConcurrentMap<K,V>, java.io.Serializable)
- org.openmolecules.chem.conf.gen.RigidFragmentCache (implements java.io.Serializable)
- java.util.concurrent.ConcurrentHashMap<K,V> (implements java.util.concurrent.ConcurrentMap<K,V>, java.io.Serializable)
- com.actelion.research.chem.io.AbstractParser
- com.actelion.research.chem.io.Mol2FileParser
- com.actelion.research.chem.docking.scoring.AbstractScoringEngine
- com.actelion.research.chem.phesa.pharmacophore.AcceptorPoint (implements com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint)
- com.actelion.research.util.graph.complete.AMemorizedObject
- com.actelion.research.util.graph.complete.SolutionCompleteGraph (implements java.lang.Comparable<T>)
- com.actelion.research.chem.io.pdb.converter.AminoAcidLabeled
- com.actelion.research.chem.forcefield.mmff.table.Angle (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.forcefield.mmff.type.Angle
- com.actelion.research.util.Angle
- com.actelion.research.chem.forcefield.mmff.AngleBend (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.potentialenergy.AngleConstraint (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.AromaticityResolver
- com.actelion.research.chem.phesa.pharmacophore.AromRingPoint (implements com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint)
- com.actelion.research.util.ArrayUtils
- com.actelion.research.calc.ArrayUtilsCalc
- com.actelion.research.share.gui.Arrow (implements com.actelion.research.share.gui.editor.chem.IDrawingObject)
- com.actelion.research.chem.forcefield.mmff.table.Atom (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.forcefield.mmff.type.Atom
- com.actelion.research.chem.conf.AtomAssembler
- com.actelion.research.chem.AtomComparator (implements java.util.Comparator<T>)
- com.actelion.research.chem.AtomFunctionAnalyzer
- com.actelion.research.chem.descriptor.flexophore.entity.AtomIndexLinkerId
- com.actelion.research.chem.io.pdb.parser.AtomRecord
- com.actelion.research.chem.AtomTypeCalculator
- com.actelion.research.chem.AtomTypeList
- com.actelion.research.chem.descriptor.flexophore.generator.AtomTypeMap
- javax.swing.plaf.basic.BasicHTML
- com.actelion.research.gui.hidpi.ScaledHTML
- com.actelion.research.util.BinaryDecoder
- com.actelion.research.chem.properties.complexity.BitArray128Factory (implements com.actelion.research.chem.properties.complexity.IBitArrayFactory<T>)
- com.actelion.research.util.BitUtils
- com.actelion.research.chem.forcefield.mmff.table.Bndk (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.io.BOMSkipper
- com.actelion.research.chem.forcefield.mmff.table.Bond (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.forcefield.mmff.type.Bond
- com.actelion.research.chem.conf.BondAngleSet
- com.actelion.research.chem.potentialenergy.BondConstraint (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.conf.BondLengthSet
- com.actelion.research.chem.conf.BondRotationHelper
- com.actelion.research.chem.io.pdb.converter.BondsCalculator
- com.actelion.research.chem.forcefield.mmff.BondStretch (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.mcs.BondVector2IdCode
- com.actelion.research.util.BurtleHasher
- com.actelion.research.util.BurtleHasherABC
- com.actelion.research.util.ByteArray
- com.actelion.research.util.ByteArrayComparator (implements java.util.Comparator<T>, java.io.Serializable)
- com.actelion.research.util.datamodel.ByteVec (implements java.lang.Comparable<T>, java.io.Serializable)
- com.actelion.research.chem.Canonizer
- com.actelion.research.chem.CanonizerBaseValue (implements java.lang.Comparable<T>)
- com.actelion.research.chem.CanonizerMesoHelper
- com.actelion.research.chem.CanonizerUtil
- com.actelion.research.chem.CanonizerUtil.StrongHasher
- com.actelion.research.gui.clipboard.external.CDXConstants
- com.actelion.research.chem.forcefield.mmff.table.Charge
- com.actelion.research.chem.forcefield.mmff.type.Charge
- com.actelion.research.chem.phesa.pharmacophore.ChargePoint (implements com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint)
- com.actelion.research.gui.clipboard.external.ChemDrawCDX
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomCharge
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomCIP
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomEnhGroup
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomEnhStereoType
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomIsotope
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPAtomRadical
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPBondAttach
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPBondBegin
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPBondEnd
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPBondDisplay
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPBondType
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPElement
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPPoint2D
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPProducts
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPReactants
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPShowAtomStereo
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPShowBondStereo
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPShowEnhAtomStereo
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDPText
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDXDocument
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDXPage
- com.actelion.research.gui.clipboard.external.ChemDrawCDX.CDXReactionStep
- com.actelion.research.chem.dnd.ChemistryDataFormats
- com.actelion.research.chem.dnd.ChemistryFlavors
- com.actelion.research.chem.ChemistryHelper
- com.actelion.research.chem.reaction.ClassificationData
- com.actelion.research.gui.clipboard.ClipboardHandler (implements com.actelion.research.gui.clipboard.IClipboardHandler)
- com.actelion.research.jfx.gui.misc.ClipboardHelper
- com.actelion.research.chem.prediction.CLogPPredictor
- com.actelion.research.chem.descriptor.flexophore.ClusterNode (implements java.lang.Comparable<T>)
- com.actelion.research.util.ColorHelper
- com.actelion.research.gui.hidpi.ColorUtils
- com.actelion.research.calc.combinatorics.CombinationGenerator
- com.actelion.research.share.gui.editor.actions.CommandAction (implements com.actelion.research.share.gui.editor.actions.Action)
- com.actelion.research.share.gui.editor.actions.CleanAction
- com.actelion.research.share.gui.editor.actions.ClearAction
- com.actelion.research.share.gui.editor.actions.CopyAction
- com.actelion.research.share.gui.editor.actions.CutAction
- com.actelion.research.share.gui.editor.actions.PasteAction
- com.actelion.research.share.gui.editor.actions.UndoAction
- com.actelion.research.util.CommandLineParser
- com.actelion.research.chem.reaction.CommonSubGraphHelper
- com.actelion.research.util.graph.complete.CompleteGraphMatcher<T>
- java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
- java.awt.Container
- javax.swing.JComponent (implements java.io.Serializable)
- javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
- javax.swing.JButton (implements javax.accessibility.Accessible)
- com.actelion.research.gui.hidpi.HiDPIIconButton
- javax.swing.JToggleButton (implements javax.accessibility.Accessible)
- com.actelion.research.gui.hidpi.HiDPIToggleButton
- javax.swing.JButton (implements javax.accessibility.Accessible)
- com.actelion.research.gui.JChemistryView (implements java.awt.event.ActionListener, java.awt.dnd.DragGestureListener, java.awt.dnd.DragSourceListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
- com.actelion.research.gui.JEditableChemistryView
- com.actelion.research.gui.JDrawToolbar (implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
- javax.swing.JFileChooser (implements javax.accessibility.Accessible)
- com.actelion.research.gui.JFileChooserOverwrite
- javax.swing.JPanel (implements javax.accessibility.Accessible)
- com.actelion.research.gui.hidpi.JBrowseButtons (implements java.awt.event.KeyListener)
- com.actelion.research.gui.JDrawArea (implements java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener)
- com.actelion.research.gui.JDrawPanel
- com.actelion.research.gui.JMessageBar
- javax.swing.JScrollPane (implements javax.accessibility.Accessible, javax.swing.ScrollPaneConstants)
- com.actelion.research.gui.CompoundCollectionPane<T> (implements java.awt.event.ActionListener, com.actelion.research.gui.CompoundCollectionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, com.actelion.research.gui.StructureListener)
- com.actelion.research.gui.JStructureView (implements java.awt.event.ActionListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, com.actelion.research.gui.StructureListener)
- com.actelion.research.gui.JEditableStructureView
- javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
- java.awt.Window (implements javax.accessibility.Accessible)
- java.awt.Dialog
- javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- com.actelion.research.gui.JAtomLabelDialog (implements java.awt.event.ActionListener)
- com.actelion.research.gui.JAtomQueryFeatureDialog (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
- com.actelion.research.gui.JBondQueryFeatureDialog (implements java.awt.event.ActionListener)
- com.actelion.research.gui.JDrawDialog (implements java.awt.event.ActionListener, java.awt.event.KeyListener)
- com.actelion.research.gui.JTextDrawingObjectDialog (implements java.awt.event.ActionListener)
- javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
- java.awt.Dialog
- javax.swing.JComponent (implements java.io.Serializable)
- java.awt.Container
- com.actelion.research.chem.io.CompoundFileHelper
- com.actelion.research.gui.FileHelper
- com.actelion.research.chem.io.CompoundFileParser
- com.actelion.research.chem.io.DWARFileParser (implements com.actelion.research.chem.io.CompoundTableConstants, com.actelion.research.chem.descriptor.DescriptorConstants)
- com.actelion.research.chem.io.ODEFileParser (implements com.actelion.research.chem.io.CompoundTableConstants, com.actelion.research.chem.descriptor.DescriptorConstants)
- com.actelion.research.chem.io.SDFileParser
- org.openmolecules.chem.conf.so.ConformationRule
- org.openmolecules.chem.conf.so.AxialStereoRule
- org.openmolecules.chem.conf.so.DistanceRule
- org.openmolecules.chem.conf.so.PlaneRule
- org.openmolecules.chem.conf.so.StraightLineRule
- org.openmolecules.chem.conf.so.TetrahedralStereoRule
- org.openmolecules.chem.conf.so.TorsionRule
- org.openmolecules.chem.conf.so.ConformationSelfOrganizer
- com.actelion.research.chem.conf.Conformer (implements java.lang.Comparable<T>)
- org.openmolecules.chem.conf.so.SelfOrganizedConformer
- org.openmolecules.chem.conf.gen.ConformerGenerator
- com.actelion.research.chem.conf.ConformerSetGenerator
- com.actelion.research.chem.forcefield.mmff.Constants
- com.actelion.research.chem.io.pdb.converter.ConstantsAminoAcidsLabeled
- com.actelion.research.util.ConstantsDWAR
- com.actelion.research.chem.descriptor.flexophore.ConstantsFlexophore
- com.actelion.research.chem.descriptor.flexophore.generator.ConstantsFlexophoreGenerator
- com.actelion.research.chem.descriptor.flexophore.ConstantsFlexophoreHardPPPoints
- com.actelion.research.calc.histogram.ConstantsHistogram
- com.actelion.research.chem.properties.complexity.ContainerBitArray
- com.actelion.research.chem.properties.complexity.ContainerFragBondsSolutions
- com.actelion.research.chem.mcs.ContainerListWithIntVec
- com.actelion.research.util.graph.complete.ContainerMemory<S>
- com.actelion.research.chem.coords.CoordinateInventor
- com.actelion.research.chem.Coordinates (implements java.lang.Comparable<T>, java.io.Serializable)
- com.actelion.research.calc.CorrelationCalculator
- com.actelion.research.chem.forcefield.mmff.table.CovRad (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.descriptor.flexophore.generator.CreatorMolDistHistViz
- com.actelion.research.chem.forcefield.mmff.Csv
- com.actelion.research.util.CursorHelper
- com.actelion.research.calc.DataProcessor
- com.actelion.research.chem.DiversitySelector
- com.actelion.research.util.DateAnalysis
- com.actelion.research.chem.forcefield.mmff.table.Def
- com.actelion.research.gui.DefaultCompoundCollectionModel<T> (implements com.actelion.research.gui.CompoundCollectionModel<T>)
- com.actelion.research.gui.DefaultCompoundCollectionModel.IDCode
- com.actelion.research.gui.DefaultCompoundCollectionModel.IDCodeWithName
- com.actelion.research.gui.DefaultCompoundCollectionModel.Molecule
- com.actelion.research.gui.DefaultCompoundCollectionModel.Native
- com.actelion.research.share.gui.Delegator<T>
- com.actelion.research.chem.DepictorTransformation
- com.actelion.research.chem.descriptor.DescriptorEncoder
- com.actelion.research.chem.descriptor.DescriptorHandlerFlexophore (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.descriptor.DescriptorHandlerFunctionalGroups (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.descriptor.pharmacophoretree.DescriptorHandlerPTree (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.phesa.DescriptorHandlerShape (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.phesa.DescriptorHandlerShapeOneConf
- com.actelion.research.chem.descriptor.DescriptorHandlerSkeletonSpheres (implements com.actelion.research.chem.descriptor.DescriptorHandler<T,U>)
- com.actelion.research.chem.descriptor.DescriptorHandlerStandard2DFactory (implements com.actelion.research.chem.descriptor.DescriptorConstants, com.actelion.research.chem.descriptor.DescriptorHandlerFactory)
- com.actelion.research.chem.descriptor.DescriptorHandlerStandardFactory
- com.actelion.research.chem.descriptor.DescriptorHelper (implements com.actelion.research.chem.descriptor.DescriptorConstants)
- com.actelion.research.chem.forcefield.mmff.table.Dfsb (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.contrib.DiastereoIDTest
- com.actelion.research.chem.contrib.DiastereotopicAtomID
- com.actelion.research.chem.descriptor.flexophore.DistHist (implements java.io.Serializable)
- com.actelion.research.chem.descriptor.flexophore.MolDistHist (implements com.actelion.research.chem.descriptor.flexophore.IMolDistHist, java.io.Serializable)
- com.actelion.research.chem.descriptor.flexophore.MolDistHistViz (implements com.actelion.research.util.graph.complete.ICompleteGraph, com.actelion.research.chem.descriptor.flexophore.IMolDistHist, java.io.Serializable)
- com.actelion.research.chem.descriptor.flexophore.MolDistHistVizFrag
- com.actelion.research.chem.descriptor.flexophore.DistHistEncoder
- com.actelion.research.chem.descriptor.flexophore.DistHistHelper
- com.actelion.research.chem.descriptor.flexophore.DistHistHelper.RangeStatistics
- com.actelion.research.chem.DiversitySelector.DiversitySelectorRecord
- com.actelion.research.chem.docking.DockingEngine
- com.actelion.research.chem.docking.DockingEngine.DockingResult
- com.actelion.research.chem.docking.DockingUtils
- com.actelion.research.chem.phesa.pharmacophore.DonorPoint (implements com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint)
- com.actelion.research.util.datamodel.DoubleArray (implements com.actelion.research.calc.INumericalDataColumn)
- com.actelion.research.util.DoubleFormat
- com.actelion.research.util.DoubleVec (implements java.lang.Comparable<T>)
- com.actelion.research.share.gui.editor.actions.DrawAction (implements com.actelion.research.share.gui.editor.actions.Action)
- com.actelion.research.share.gui.editor.actions.ArrowAction
- com.actelion.research.share.gui.editor.actions.AtomHighlightAction
- com.actelion.research.share.gui.editor.actions.AtomMapAction
- com.actelion.research.share.gui.editor.actions.BondHighlightAction
- com.actelion.research.share.gui.editor.actions.AddRingAction
- com.actelion.research.share.gui.editor.actions.BondBaseAction
- com.actelion.research.share.gui.editor.actions.NewBondAction
- com.actelion.research.share.gui.editor.actions.DownBondAction
- com.actelion.research.share.gui.editor.actions.UpBondAction
- com.actelion.research.share.gui.editor.actions.NewBondAction
- com.actelion.research.share.gui.editor.actions.DeleteAction
- com.actelion.research.share.gui.editor.actions.NewChainAction
- com.actelion.research.share.gui.editor.actions.SelectionAction
- com.actelion.research.share.gui.editor.actions.ChangeAtomAction
- com.actelion.research.share.gui.editor.actions.ChangeAtomPropertiesAction
- com.actelion.research.share.gui.editor.actions.ChangeChargeAction
- com.actelion.research.share.gui.editor.actions.UnknownParityAction
- com.actelion.research.share.gui.editor.actions.ZoomRotateAction
- com.actelion.research.share.gui.DrawConfig
- com.actelion.research.share.gui.editor.chem.DrawingObject (implements java.lang.Cloneable, com.actelion.research.share.gui.editor.chem.IDrawingObject)
- com.actelion.research.chem.DrawingObjectFactory
- com.actelion.research.chem.prediction.DruglikenessPredictor
- com.actelion.research.chem.prediction.DrugScoreCalculator
- com.actelion.research.chem.io.DWARFileCreator
- com.actelion.research.chem.io.DWARFileParser.SpecialField
- javax.swing.text.EditorKit (implements java.lang.Cloneable, java.io.Serializable)
- javax.swing.text.DefaultEditorKit
- javax.swing.text.StyledEditorKit
- javax.swing.text.html.HTMLEditorKit (implements javax.accessibility.Accessible)
- com.actelion.research.gui.hidpi.ScaledEditorKit
- javax.swing.text.html.HTMLEditorKit (implements javax.accessibility.Accessible)
- javax.swing.text.StyledEditorKit
- javax.swing.text.DefaultEditorKit
- com.actelion.research.chem.forcefield.mmff.Electrostatic (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.Element
- com.actelion.research.chem.potentialenergy.EmpiricalLigandStrain (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.phesa.EncodeFunctions
- com.actelion.research.util.EncoderFloatingPointNumbers
- com.actelion.research.util.EncoderIntegerNumbers
- com.actelion.research.util.ErrorHashMap (implements java.io.Serializable)
- com.actelion.research.chem.phesaflex.EvaluableFlexibleOverlap (implements com.actelion.research.chem.optimization.Evaluable)
- com.actelion.research.chem.phesa.EvaluableOverlap (implements com.actelion.research.chem.optimization.Evaluable)
- java.util.EventObject (implements java.io.Serializable)
- com.actelion.research.gui.DrawAreaEvent
- com.actelion.research.chem.mcs.ExhaustiveFragmentGeneratorAtoms
- com.actelion.research.chem.mcs.ExhaustiveFragmentGeneratorBonds
- com.actelion.research.chem.mcs.ExhaustiveFragmentGeneratorParallizer
- com.actelion.research.chem.properties.complexity.ExhaustiveFragmentsStatistics
- com.actelion.research.chem.mcs.ExhaustiveMCSGeneratorParallel
- com.actelion.research.chem.phesa.pharmacophore.ExitVectorPoint (implements com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint)
- com.actelion.research.chem.ExtendedDepictor
- com.actelion.research.chem.ExtendedMoleculeFunctions
- com.actelion.research.util.graph.complete.FactorySolution (implements com.actelion.research.util.graph.complete.IFactory<S>)
- com.actelion.research.util.FastSpline
- com.actelion.research.util.FastSpline.Polynome
- com.actelion.research.chem.descriptor.pharmacophoretree.FeatureCalculator
- javax.swing.filechooser.FileFilter
- com.actelion.research.chem.io.CompoundFileFilter
- com.actelion.research.chem.descriptor.FingerPrintGenerator
- com.actelion.research.chem.phesaflex.FlexibleShapeAlignment
- com.actelion.research.chem.descriptor.flexophore.generator.FlexophoreCreateFunctions
- com.actelion.research.chem.descriptor.flexophore.entity.FlexophorePoint
- com.actelion.research.util.Formatter
- com.actelion.research.chem.io.pdb.parser.FormulaParser
- com.actelion.research.chem.properties.fractaldimension.FractalDimensionMolecule
- com.actelion.research.chem.properties.fractaldimension.FractalDimensionMoleculeMain
- com.actelion.research.chem.shredder.Fragment3D (implements java.lang.Comparable<T>)
- com.actelion.research.chem.coords.FragmentAssociation
- com.actelion.research.chem.properties.complexity.FragmentDefinedByBondsHasher
- com.actelion.research.chem.properties.complexity.FragmentDefinedByBondsIdCode
- com.actelion.research.chem.shredder.Fragmenter3D
- com.actelion.research.chem.reaction.FunctionalGroupClassifier
- com.actelion.research.chem.phesa.Gaussian3D
- com.actelion.research.chem.phesa.AtomicGaussian
- com.actelion.research.chem.phesa.pharmacophore.PPGaussian
- com.actelion.research.chem.phesa.pharmacophore.SimplePPGaussian
- com.actelion.research.chem.phesa.VolumeGaussian
- com.actelion.research.chem.descriptor.flexophore.calculator.GeometryCalculator
- com.actelion.research.chem.io.pdb.converter.GeometryCalculator
- com.actelion.research.share.gui.editor.geom.GeomFactory
- com.actelion.research.chem.descriptor.pharmacophoretree.Graph
- com.actelion.research.chem.descriptor.pharmacophoretree.Graph.Edge
- java.awt.Graphics
- java.awt.Graphics2D
- com.actelion.research.gui.wmf.WMFGraphics2D
- com.actelion.research.gui.wmf.WMFGraphics
- java.awt.Graphics2D
- com.actelion.research.jfx.gui.GraphicsContextImpl (implements com.actelion.research.share.gui.editor.geom.IDrawContext<T>)
- com.actelion.research.util.hash.HashSetInt
- com.actelion.research.chem.docking.scoring.chemscore.HBTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.forcefield.mmff.table.HerschbachLaurie (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.io.pdb.parser.HetNameParser
- com.actelion.research.chem.io.pdb.parser.HetSynonymParser
- com.actelion.research.gui.hidpi.HiDPIHelper
- com.actelion.research.gui.hidpi.HiDPIUtil
- com.actelion.research.calc.histogram.Histogram
- com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.HistogramMatchCalculator
- com.actelion.research.chem.contrib.HoseCodeCreator
- com.actelion.research.chem.descriptor.pharmacophoretree.HungarianAlgorithm
- com.actelion.research.chem.contrib.HydrogenHandler
- com.actelion.research.util.datamodel.IDCodeCoord
- com.actelion.research.chem.shredder.Fragment
- com.actelion.research.chem.IDCodeParserWithoutCoordinateInvention
- com.actelion.research.chem.IDCodeParser
- com.actelion.research.util.datamodel.IdentifiedObject<T> (implements java.lang.Comparable<T>, com.actelion.research.util.datamodel.IIdentifiedObject<T>)
- com.actelion.research.chem.properties.fractaldimension.InputObjectFracDimCalc
- com.actelion.research.chem.properties.fractaldimension.ResultFracDimCalc
- com.actelion.research.chem.properties.fractaldimension.InputObjectFracDimCalc
- com.actelion.research.gui.clipboard.ImageClipboardHandler
- com.actelion.research.gui.clipboard.ImageClipboardHandler.ImageSelection (implements java.awt.datatransfer.ClipboardOwner, java.awt.datatransfer.Transferable)
- javax.swing.ImageIcon (implements javax.accessibility.Accessible, javax.swing.Icon, java.io.Serializable)
- com.actelion.research.gui.hidpi.HiDPIIcon
- com.actelion.research.share.gui.editor.ImageProvider<T>
- com.actelion.research.chem.prediction.IncrementTable
- com.actelion.research.chem.descriptor.flexophore.IndexCoordinates
- com.actelion.research.chem.properties.complexity.IndexHash
- com.actelion.research.chem.properties.complexity.BitArray128 (implements com.actelion.research.chem.properties.complexity.IBitArray)
- com.actelion.research.util.datamodel.IntArray (implements java.io.Serializable)
- com.actelion.research.util.IntArrayComparator (implements java.util.Comparator<T>, java.io.Serializable)
- com.actelion.research.util.datamodel.IntegerDouble
- com.actelion.research.chem.interactionstatistics.InteractionAtomTypeCalculator
- com.actelion.research.chem.interactionstatistics.InteractionDistanceStatistics
- com.actelion.research.chem.interactionstatistics.InteractionSimilarityTable
- com.actelion.research.chem.interactionstatistics.InteractionSimilarityTable.InteractionDescriptor
- com.actelion.research.chem.docking.scoring.idoscore.InteractionTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.descriptor.flexophore.generator.InteractionTypeMap
- com.actelion.research.chem.descriptor.flexophore.calculator.IntQueue
- com.actelion.research.util.IntQueue
- com.actelion.research.util.datamodel.IntVec (implements java.lang.Comparable<T>)
- com.actelion.research.chem.coords.InventorAngle
- com.actelion.research.chem.coords.InventorChain
- com.actelion.research.chem.coords.InventorCharge
- com.actelion.research.chem.coords.InventorFragment
- com.actelion.research.chem.coords.InventorTemplate
- com.actelion.research.util.IO
- com.actelion.research.chem.phesa.pharmacophore.IonizableGroupDetector
- com.actelion.research.chem.descriptor.pharmacophoretree.IonizableGroupDetector2D
- com.actelion.research.chem.IsomericSmilesCreator
- com.actelion.research.chem.IsotopeHelper
- com.actelion.research.chem.alignment3d.KabschAlignment
- com.actelion.research.chem.docking.LigandPose (implements com.actelion.research.chem.optimization.Evaluable)
- com.actelion.research.calc.regression.linear.simple.LinearRegression
- com.actelion.research.chem.descriptor.flexophore.entity.Linker
- com.actelion.research.chem.io.pdb.parser.ListInteger<T>
- com.actelion.research.chem.mcs.ListWithIntVec
- com.actelion.research.chem.properties.complexity.ListWithIntVecIdCode
- com.actelion.research.util.LittleEndianDataInputStream (implements java.io.DataInput)
- com.actelion.research.util.LittleEndianDataOutputStream (implements java.io.DataOutput)
- com.actelion.research.calc.Logarithm
- com.actelion.research.gui.LookAndFeelHelper
- com.actelion.research.calc.LUDecomposition (implements java.io.Serializable)
- com.actelion.research.chem.MarkushStructure (implements java.io.Serializable)
- com.actelion.research.chem.phesaflex.MathHelper
- com.actelion.research.calc.Matrix
- com.actelion.research.calc.histogram.MatrixBasedHistogram
- com.actelion.research.chem.mcs.MCS
- com.actelion.research.chem.mcs.MCSFast
- com.actelion.research.chem.mcs.MCSFunctions
- com.actelion.research.chem.reaction.MCSReactionMapper (implements com.actelion.research.chem.reaction.IReactionMapper)
- com.actelion.research.chem.descriptor.flexophore.MDHIndexTables
- com.actelion.research.calc.statistics.median.MedianStatisticFunctions
- com.actelion.research.gui.wmf.MetaFile
- com.actelion.research.gui.wmf.WMF (implements com.actelion.research.gui.wmf.WMFConstants)
- com.actelion.research.chem.docking.scoring.chemscore.MetalTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.phesaflex.MetropolisMonteCarloHelper
- com.actelion.research.calc.graph.MinimumSpanningTree
- com.actelion.research.share.gui.editor.Model
- com.actelion.research.chem.properties.complexity.ModelExhaustiveStatistics
- com.actelion.research.calc.statistics.median.ModelMedianDouble
- com.actelion.research.calc.statistics.median.ModelMedianFloat
- com.actelion.research.calc.statistics.median.ModelMedianInteger
- com.actelion.research.calc.statistics.median.ModelMedianLong
- com.actelion.research.chem.io.pdb.parser.ModelParser
- com.actelion.research.chem.mcs.ModelSampleFragments
- com.actelion.research.chem.descriptor.flexophore.MolDistHistEncoder
- com.actelion.research.chem.descriptor.flexophore.MolDistHistVizEncoder
- com.actelion.research.chem.properties.complexity.MolecularComplexityCalculator
- com.actelion.research.chem.MolecularFormula
- com.actelion.research.chem.phesa.MolecularVolume
- com.actelion.research.chem.Molecule (implements java.io.Serializable)
- com.actelion.research.chem.ExtendedMolecule (implements java.io.Serializable)
- com.actelion.research.chem.StereoMolecule
- com.actelion.research.chem.forcefield.mmff.MMFFMolecule
- com.actelion.research.chem.Molecule3D (implements java.lang.Comparable<T>)
- com.actelion.research.chem.SDFileMolecule (implements java.io.Serializable)
- com.actelion.research.chem.StereoMolecule
- com.actelion.research.chem.ExtendedMolecule (implements java.io.Serializable)
- com.actelion.research.chem.Molecule3DFunctions
- com.actelion.research.chem.reaction.MoleculeAutoMapper (implements com.actelion.research.chem.reaction.AutoMapper)
- com.actelion.research.jfx.dataformat.MoleculeDataFormats
- com.actelion.research.gui.dnd.MoleculeDragAdapter (implements java.awt.dnd.DragSourceListener)
- com.actelion.research.gui.dnd.MoleculeDropAdapter (implements java.awt.dnd.DropTargetListener)
- com.actelion.research.gui.dnd.SDFileMoleculeDropAdapter
- com.actelion.research.chem.io.pdb.converter.MoleculeGrid
- com.actelion.research.chem.MoleculeNeutralizer
- com.actelion.research.chem.MoleculeStandardizer
- com.actelion.research.gui.dnd.MoleculeTransferable (implements java.awt.datatransfer.ClipboardOwner, java.awt.datatransfer.Transferable)
- com.actelion.research.gui.dnd.SDFileMoleculeTransferable
- com.actelion.research.jfx.gui.chem.MoleculeViewSkin (implements com.actelion.research.jfx.gui.chem.IMoleculeView, javafx.scene.control.Skin<C>)
- com.actelion.research.chem.MolfileCreator
- com.actelion.research.chem.MolfileParser
- com.actelion.research.chem.MolfileV3Creator
- com.actelion.research.chem.descriptor.flexophore.generator.MultCoordFragIndex
- com.actelion.research.chem.properties.complexity.MultipleNonOverlapSolution
- com.actelion.research.chem.Mutation
- com.actelion.research.chem.Mutator
- com.actelion.research.chem.NamedSubstituents
- com.actelion.research.gui.clipboard.NativeClipboardAccessor
- javafx.scene.Node (implements javafx.event.EventTarget, javafx.css.Styleable)
- javafx.scene.Parent
- javafx.scene.layout.Region
- javafx.scene.control.Control (implements javafx.scene.control.Skinnable)
- com.actelion.research.jfx.gui.chem.MoleculeView (implements com.actelion.research.jfx.gui.chem.IMoleculeView)
- javafx.scene.layout.Pane
- com.actelion.research.jfx.gui.chem.DragGlassPane
- javafx.scene.control.Control (implements javafx.scene.control.Skinnable)
- javafx.scene.layout.Region
- javafx.scene.Parent
- java.lang.Number (implements java.io.Serializable)
- com.actelion.research.util.concurrent.AtomicFloat
- com.actelion.research.chem.properties.complexity.ObjectiveExhaustiveStatistics
- com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.ObjectiveFlexophoreHardMatchUncovered (implements com.actelion.research.util.graph.complete.IObjectiveCompleteGraph<T>)
- com.actelion.research.chem.optimization.OptimizerLBFGS
- com.actelion.research.chem.forcefield.mmff.OutOfPlane (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.forcefield.mmff.table.OutOfPlane (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.prediction.ParameterizedStringList
- com.actelion.research.chem.io.pdb.parser.PDBCoordEntryFile
- com.actelion.research.chem.io.pdb.parser.PDBFileParser
- com.actelion.research.chem.forcefield.mmff.PeriodicTable
- com.actelion.research.chem.PeriodicTable
- com.actelion.research.chem.phesa.pharmacophore.PharmacophoreCalculator
- com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreNode
- com.actelion.research.chem.phesa.pharmacophore.PharmacophorePointFactory
- com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTree
- com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTree.BiGramInt
- com.actelion.research.chem.descriptor.pharmacophoretree.PharmacophoreTreeGenerator
- com.actelion.research.chem.phesa.PheSAAlignment
- com.actelion.research.chem.phesa.PheSAAlignment.PheSAResult
- com.actelion.research.chem.alignment3d.PheSAAlignmentOptimizer
- com.actelion.research.chem.phesa.PheSABindingHypothesis
- com.actelion.research.chem.phesa.PheSAMolecule
- com.actelion.research.util.Pipeline<T> (implements com.actelion.research.util.IPipeline<T>)
- com.actelion.research.util.Platform
- com.actelion.research.chem.docking.scoring.plp.PLPTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- java.awt.geom.Point2D (implements java.lang.Cloneable)
- java.awt.Point (implements java.io.Serializable)
- com.actelion.research.util.datamodel.ScorePoint
- java.awt.Point (implements java.io.Serializable)
- com.actelion.research.util.datamodel.PointDouble
- com.actelion.research.util.PointUtils
- com.actelion.research.chem.prediction.PolarSurfaceAreaPredictor
- com.actelion.research.share.gui.Polygon (implements com.actelion.research.share.gui.editor.geom.IPolygon)
- com.actelion.research.chem.forcefield.mmff.PositionConstraint (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.descriptor.flexophore.PPNode (implements java.lang.Comparable<T>)
- com.actelion.research.chem.descriptor.flexophore.entity.PPNodeRGroup
- com.actelion.research.chem.descriptor.flexophore.PPNodeViz (implements java.io.Serializable)
- com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.PPNodeSimilarity (implements com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.IPPNodeSimilarity)
- com.actelion.research.chem.descriptor.flexophore.PPNodeVizTriangle (implements java.lang.Comparable<T>)
- com.actelion.research.chem.phesa.pharmacophore.PPTriangle
- com.actelion.research.chem.phesa.pharmacophore.PPTriangleCreator
- com.actelion.research.chem.phesa.pharmacophore.PPTriangleMatcher
- com.actelion.research.chem.phesa.pharmacophore.PPTriangleMatcher.AlignmentResult
- com.actelion.research.chem.PropertyCalculator
- com.actelion.research.chem.io.pdb.parser.ProteinSynthesizer
- com.actelion.research.chem.phesa.Quaternion
- com.actelion.research.chem.phesa.QuickMathCalculator
- com.actelion.research.chem.io.RDFileParser
- com.actelion.research.chem.reaction.Reaction (implements java.io.Serializable)
- com.actelion.research.gui.dnd.ReactionDragAdapter (implements java.awt.dnd.DragSourceListener)
- com.actelion.research.gui.dnd.ReactionDropAdapter (implements java.awt.dnd.DropTargetListener)
- com.actelion.research.chem.reaction.ReactionEncoder
- com.actelion.research.chem.reaction.ReactionSearch
- com.actelion.research.chem.reaction.ReactionSearchSpecification (implements java.io.Serializable)
- com.actelion.research.gui.dnd.ReactionTransferable (implements java.awt.datatransfer.ClipboardOwner, java.awt.datatransfer.Transferable)
- com.actelion.research.chem.reaction.Reactor
- com.actelion.research.chem.io.pdb.parser.RemarkParser
- com.actelion.research.chem.docking.scoring.plp.REPTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.io.pdb.parser.Residue
- com.actelion.research.chem.properties.complexity.ResultFragmentsStatistic
- com.actelion.research.chem.properties.complexity.ResultObjective
- org.openmolecules.chem.conf.gen.RigidFragment
- org.openmolecules.chem.conf.gen.RigidFragmentCache.CacheEntry (implements java.lang.Comparable<T>)
- org.openmolecules.chem.conf.gen.RigidFragmentProvider
- com.actelion.research.chem.RingCollection
- org.openmolecules.chem.conf.gen.RotatableBond
- com.actelion.research.chem.mcs.RunBondVector2IdCode (implements java.lang.Runnable)
- com.actelion.research.chem.io.RXNFileCreator
- com.actelion.research.chem.io.RXNFileParser
- com.actelion.research.chem.io.RXNFileV3Creator
- com.actelion.research.chem.ScaffoldHelper
- com.actelion.research.gui.ScrollPaneAutoScrollerWhenDragging
- com.actelion.research.chem.forcefield.mmff.Sdf
- com.actelion.research.chem.forcefield.mmff.Search
- com.actelion.research.chem.forcefield.mmff.Separation
- com.actelion.research.chem.descriptor.SimilarityCalculatorInfo
- com.actelion.research.chem.descriptor.DescriptorInfo
- com.actelion.research.chem.SimpleCanonizer
- com.actelion.research.chem.docking.scoring.chemscore.SimpleMetalTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.calc.SingularValueDecomposition (implements java.io.Serializable)
- com.actelion.research.chem.io.pdb.parser.SiteParser
- com.actelion.research.util.SizeOf
- com.actelion.research.util.Sketch
- com.actelion.research.calc.filter.SlidingWindow
- com.actelion.research.chem.descriptor.flexophore.SlidingWindowDistHist
- com.actelion.research.chem.SmilesCreator
- com.actelion.research.chem.SmilesParser
- com.actelion.research.util.SmoothingSplineInterpolator
- com.actelion.research.chem.prediction.SolubilityPredictor
- com.actelion.research.util.SortedList<T>
- com.actelion.research.util.UniqueList<T> (implements java.io.Serializable)
- com.actelion.research.chem.forcefield.mmff.SortedPair (implements java.lang.Comparable<T>)
- com.actelion.research.chem.SortedStringList (implements java.io.Serializable)
- com.actelion.research.chem.UniqueStringList (implements java.io.Serializable)
- com.actelion.research.chem.interactionstatistics.SplineFunction
- com.actelion.research.chem.reaction.SRSearcher
- com.actelion.research.chem.SSSearcher
- com.actelion.research.chem.SSSearcherWithIndex
- com.actelion.research.chem.conf.torsionstrain.StatisticalTorsionPotential
- com.actelion.research.chem.conf.torsionstrain.StatisticalTorsionTerm (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.forcefield.mmff.table.Stbn (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.docking.scoring.idoscore.StrainTerm
- com.actelion.research.chem.forcefield.mmff.StretchBend (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.util.convert.String2DoubleArray
- com.actelion.research.util.StringFunctions
- com.actelion.research.io.StringReadChannel
- com.actelion.research.chem.io.pdb.parser.StructureAssembler
- com.actelion.research.chem.descriptor.flexophore.calculator.StructureCalculator
- com.actelion.research.chem.StructureInfo (implements java.io.Serializable)
- com.actelion.research.chem.name.StructureNameResolver
- com.actelion.research.chem.StructureSearch
- com.actelion.research.chem.StructureSearchSpecification (implements java.io.Serializable)
- com.actelion.research.chem.StructureTransferData (implements java.io.Serializable)
- javax.swing.text.StyleContext (implements javax.swing.text.AbstractDocument.AttributeContext, java.io.Serializable)
- javax.swing.text.html.StyleSheet
- com.actelion.research.gui.hidpi.ScaledStyleSheet
- javax.swing.text.html.StyleSheet
- com.actelion.research.chem.descriptor.flexophore.generator.SubFlexophoreGenerator
- com.actelion.research.chem.descriptor.flexophore.generator.SubFlexophoreGenerator.ViolatedConditionsCount
- com.actelion.research.chem.descriptor.flexophore.redgraph.SubGraphExtractor
- com.actelion.research.chem.descriptor.flexophore.redgraph.SubGraphIndices
- com.actelion.research.chem.mcs.SubStructSearchBondIndex
- com.actelion.research.chem.mcs.SubStructSearchExhaustiveTreeWalker
- com.actelion.research.chem.properties.complexity.SummaryFragments
- com.actelion.research.chem.properties.complexity.SymmetryCalculator
- com.actelion.research.chem.conf.SymmetryCorrectedRMSDCalculator
- com.actelion.research.util.datamodel.table.TableModelString
- com.actelion.research.chem.forcefield.mmff.Tables
- com.actelion.research.chem.TautomerHelper
- com.actelion.research.chem.contrib.testChiralDia
- com.actelion.research.chem.contrib.testDiaID
- com.actelion.research.chem.contrib.testHoses
- com.actelion.research.gui.clipboard.TextClipboardHandler
- java.lang.Throwable (implements java.io.Serializable)
- java.lang.Exception
- com.actelion.research.chem.docking.DockingFailedException
- java.lang.RuntimeException
- com.actelion.research.chem.forcefield.mmff.BadAtomTypeException
- com.actelion.research.chem.forcefield.mmff.BadRingAromException
- com.actelion.research.chem.descriptor.flexophore.ExceptionConformationGenerationFailed
- com.actelion.research.chem.descriptor.flexophore.UnparametrizedAtomTypeException
- java.lang.Exception
- com.actelion.research.chem.forcefield.mmff.table.Torsion (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.forcefield.mmff.type.Torsion
- com.actelion.research.chem.forcefield.mmff.table.Torsion.Kb
- com.actelion.research.chem.forcefield.mmff.TorsionAngle (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.potentialenergy.TorsionConstraint (implements com.actelion.research.chem.potentialenergy.PotentialEnergyTerm)
- com.actelion.research.chem.conf.TorsionDB
- com.actelion.research.chem.conf.TorsionDescriptor (implements java.lang.Comparable<T>)
- com.actelion.research.chem.conf.TorsionDescriptorHelper
- com.actelion.research.chem.conf.TorsionDetail
- com.actelion.research.chem.conf.TorsionPrediction
- com.actelion.research.chem.conf.TorsionRelevanceHelper
- org.openmolecules.chem.conf.gen.TorsionSet (implements java.lang.Comparable<T>)
- org.openmolecules.chem.conf.gen.TorsionSetEliminationRule
- org.openmolecules.chem.conf.gen.TorsionSetStrategy
- org.openmolecules.chem.conf.gen.TorsionSetStrategyLikelySystematic
- org.openmolecules.chem.conf.gen.TorsionSetStrategyRandom
- org.openmolecules.chem.conf.gen.TorsionSetStrategyAdaptiveRandom
- com.actelion.research.chem.prediction.ToxicityPredictor
- com.actelion.research.chem.descriptor.pharmacophoretree.TreeMatcher
- com.actelion.research.chem.descriptor.pharmacophoretree.TreeMatcher.FeatureMatch
- com.actelion.research.chem.descriptor.pharmacophoretree.TreeMatcher.TreeMatching
- com.actelion.research.chem.descriptor.pharmacophoretree.TreeUtils
- com.actelion.research.calc.geometry.Triangle
- com.actelion.research.chem.properties.complexity.UniqueFragmentEstimator
- com.actelion.research.chem.forcefield.mmff.table.VanDerWaals (implements com.actelion.research.chem.forcefield.mmff.Searchable)
- com.actelion.research.chem.forcefield.mmff.VanDerWaals (implements com.actelion.research.chem.forcefield.mmff.EnergyTerm)
- com.actelion.research.chem.forcefield.mmff.Vector3
- com.actelion.research.calc.VectorSimilarity
- com.actelion.research.gui.VerticalFlowLayout (implements java.awt.LayoutManager, java.io.Serializable)
- java.util.AbstractCollection<E> (implements java.util.Collection<E>)
Interface Hierarchy
- com.actelion.research.share.gui.editor.actions.Action
- com.actelion.research.chem.reaction.AutoMapper
- com.actelion.research.gui.CompoundCollectionListener
- com.actelion.research.gui.CompoundCollectionModel<T>
- com.actelion.research.chem.io.CompoundTableConstants
- com.actelion.research.chem.descriptor.DescriptorConstants
- com.actelion.research.gui.DrawAreaListener
- com.actelion.research.chem.forcefield.mmff.EnergyTerm
- com.actelion.research.chem.optimization.Evaluable
- java.util.EventListener
- com.actelion.research.gui.StructureListener
- com.actelion.research.chem.forcefield.ForceField
- com.actelion.research.chem.forcefield.ForceFieldChangeListener
- com.actelion.research.chem.properties.complexity.IBitArray
- com.actelion.research.chem.properties.complexity.IBitArrayFactory<T>
- com.actelion.research.share.gui.editor.listeners.IChangeListener
- com.actelion.research.gui.clipboard.IClipboardHandler
- com.actelion.research.share.gui.editor.geom.IColor
- com.actelion.research.util.graph.complete.ICompleteGraph
- com.actelion.research.chem.descriptor.flexophore.IMolDistHist
- com.actelion.research.share.gui.editor.geom.ICursor
- com.actelion.research.share.gui.editor.chem.IDepictor<T>
- com.actelion.research.share.gui.editor.dialogs.IDialog
- com.actelion.research.share.gui.editor.dialogs.IAtomPropertiesDialog
- com.actelion.research.share.gui.editor.dialogs.IAtomQueryFeaturesDialog
- com.actelion.research.share.gui.editor.dialogs.IBondQueryFeaturesDialog
- com.actelion.research.share.gui.editor.geom.IDrawContext<T>
- com.actelion.research.share.gui.editor.chem.IDrawingObject
- com.actelion.research.share.gui.editor.chem.IArrow
- com.actelion.research.util.graph.complete.IFactory<S>
- com.actelion.research.util.datamodel.IIdentifiedObject<T>
- com.actelion.research.share.gui.editor.io.IKeyCode
- com.actelion.research.share.gui.editor.io.IKeyEvent
- com.actelion.research.jfx.gui.chem.IMoleculeView
- com.actelion.research.share.gui.editor.io.IMouseEvent
- com.actelion.research.calc.INumericalDataColumn
- com.actelion.research.util.graph.complete.IObjectiveCompleteGraph<T>
- com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint
- com.actelion.research.util.IPipeline<T>
- com.actelion.research.share.gui.editor.geom.IPolygon
- com.actelion.research.chem.descriptor.flexophore.completegraphmatcher.IPPNodeSimilarity
- com.actelion.research.share.gui.editor.chem.IReactionArrow
- com.actelion.research.chem.reaction.IReactionMapper
- com.actelion.research.share.gui.editor.geom.IRectangle2D
- com.actelion.research.chem.descriptor.ISimilarityCalculator<T>
- com.actelion.research.chem.descriptor.DescriptorHandler<T,U>
- com.actelion.research.chem.descriptor.ISimilarityHandlerFactory
- com.actelion.research.chem.descriptor.DescriptorHandlerFactory
- com.actelion.research.chem.name.IStructureNameResolver
- com.actelion.research.share.gui.editor.listeners.IValidationListener
- com.actelion.research.share.gui.editor.Model.AtomHighlightCallback
- com.actelion.research.share.gui.editor.Model.BondHighlightCallback
- com.actelion.research.chem.MoleculeFilter
- com.actelion.research.chem.MutationBiasProvider
- com.actelion.research.chem.potentialenergy.PotentialEnergyTerm
- com.actelion.research.calc.ProgressListener
- com.actelion.research.calc.ProgressController (also extends com.actelion.research.calc.ThreadMaster)
- com.actelion.research.chem.reaction.ReactionSearchDataSource
- com.actelion.research.chem.forcefield.mmff.Sdf.OnMolecule
- com.actelion.research.chem.forcefield.mmff.Searchable
- com.actelion.research.jfx.gui.misc.Selector<T>
- com.actelion.research.share.gui.editor.geom.StrokeLineCap<T>
- com.actelion.research.share.gui.editor.geom.StrokeLineJoin
- com.actelion.research.chem.StructureSearchController
- com.actelion.research.chem.StructureSearchDataSource
- com.actelion.research.calc.ThreadMaster
- com.actelion.research.calc.ProgressController (also extends com.actelion.research.calc.ProgressListener)
- com.actelion.research.share.gui.editor.actions.ToolbarSelectionChange
- com.actelion.research.chem.conf.VDWRadii
- com.actelion.research.gui.wmf.WMFConstants
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- com.actelion.research.chem.io.pdb.converter.AminoAcidsLabeledContainer
- com.actelion.research.chem.CanonizerUtil.IDCODE_TYPE
- com.actelion.research.share.gui.DialogResult
- com.actelion.research.chem.docking.DockingEngine.ScoringFunction
- com.actelion.research.chem.docking.DockingEngine.StartPosition
- com.actelion.research.util.Formatter.LocaleFormat
- com.actelion.research.chem.interactionstatistics.InteractionAtomTypeCalculator.AtomFlagCount
- com.actelion.research.chem.interactionstatistics.InteractionAtomTypeCalculator.AtomPropertyMask
- com.actelion.research.chem.interactionstatistics.InteractionAtomTypeCalculator.AtomPropertyShift
- com.actelion.research.chem.interactionstatistics.InteractionAtomTypeCalculator.FunctionalGroup
- com.actelion.research.chem.phesa.pharmacophore.IPharmacophorePoint.Functionality
- com.actelion.research.chem.phesa.PheSAAlignment.axis
- com.actelion.research.chem.forcefield.mmff.RingBoolean
- com.actelion.research.chem.forcefield.mmff.Separation.Relation
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)