OpenMS  2.4.0
ProteinInference.h
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34 
35 #pragma once
36 
37 #include <OpenMS/KERNEL/Peak2D.h>
38 
39 #include <vector>
40 
41 namespace OpenMS
42 {
43 
44  class PeptideHit;
45  class ConsensusMap;
46 
54  class OPENMS_DLLAPI ProteinInference
55  {
56 
57 public:
58 
60 
63 
66 
68  ProteinInference& operator=(const ProteinInference& rhs);
69 
83  void infer(ConsensusMap& consensus_map, const UInt reference_map);
84 
85 
86 protected:
87 
88  void infer_(ConsensusMap& consensus_map,
89  const size_t protein_idenfication_index,
90  const UInt reference_map);
91 
92  bool sortByUnique_(std::vector<PeptideHit>& peptide_hits_local, const bool is_higher_score_better);
93 
94  }; // !class
95 
96 } // !namespace
97 
OpenMS::TOPPBase
Base class for TOPP applications.
Definition: TOPPBase.h:150
VersionInfo.h
OpenMS::Map::has
bool has(const Key &key) const
Test whether the map contains the given key.
Definition: Map.h:108
OpenMS::ProteinInference
[experimental class] given a peptide quantitation, infer corresponding protein quantities
Definition: ProteinInference.h:54
OpenMS::String
A more convenient string class.
Definition: String.h:57
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
IdXMLFile.h
OpenMS::DateTime::now
static DateTime now()
Returns the current date and time.
OpenMS::IdXMLFile::load
void load(const String &filename, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids)
Loads the identifications of an idXML file without identifier.
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:46
OpenMS::DateTime::get
void get(UInt &month, UInt &day, UInt &year, UInt &hour, UInt &minute, UInt &second) const
Fills the arguments with the date and the time.
Peak2D.h
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:75
OpenMS::UInt
unsigned int UInt
Unsigned integer type.
Definition: Types.h:94
main
int main(int argc, const char **argv)
Definition: INIFileEditor.cpp:73
OpenMS::IdXMLFile::store
void store(String filename, const std::vector< ProteinIdentification > &protein_ids, const std::vector< PeptideIdentification > &peptide_ids, const String &document_id="")
Stores the data in an idXML file.
OpenMS::Map::ConstIterator
Base::const_iterator ConstIterator
Definition: Map.h:81
OpenMS::Map
Map class based on the STL map (containing several convenience functions)
Definition: Map.h:50
OpenMS::DateTime
DateTime Class.
Definition: DateTime.h:54
OpenMS::ProteinInference::IntensityType
Peak2D::IntensityType IntensityType
Definition: ProteinInference.h:59
TOPPBase.h
float
OpenMS::IdXMLFile
Used to load and store idXML files.
Definition: IdXMLFile.h:63