Package picard.fastq
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Interface Summary Interface Description ReadNameEncoder -
Class Summary Class Description BamToBfq Converts a BAM file into a BFQ (binary fastq formatted) file.BamToBfqWriter Class to take unmapped reads in BAM file format and create Maq binary fastq format file(s) -- one or two of them, depending on whether it's a paired-end read.Casava18ReadNameEncoder A read name encoder conforming to the standard described by Illumina Casava 1.8.IlluminaReadNameEncoder A read name encoder following the encoding initially produced by picard fastq writers.