Class CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverage

    • Constructor Detail

      • WgsMetricsWithNonZeroCoverage

        public WgsMetricsWithNonZeroCoverage()
      • WgsMetricsWithNonZeroCoverage

        public WgsMetricsWithNonZeroCoverage​(htsjdk.samtools.util.IntervalList intervals,
                                             htsjdk.samtools.util.Histogram<Integer> highQualityDepthHistogram,
                                             htsjdk.samtools.util.Histogram<Integer> unfilteredDepthHistogram,
                                             double pctExcludedByMapq,
                                             double pctExcludedByDupes,
                                             double pctExcludedByPairing,
                                             double pctExcludedByBaseq,
                                             double pctExcludedByOverlap,
                                             double pctExcludedByCapping,
                                             double pctTotal,
                                             int coverageCap,
                                             htsjdk.samtools.util.Histogram<Integer> unfilteredBaseQHistogram,
                                             int sampleSize)