Package picard.sam
Class SetNmAndUqTags
- java.lang.Object
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- picard.cmdline.CommandLineProgram
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- picard.sam.SetNmMdAndUqTags
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- picard.sam.SetNmAndUqTags
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@Deprecated @DocumentedFeature public class SetNmAndUqTags extends SetNmMdAndUqTags
Deprecated.This tool is deprecated and SetNmMdAndUqTags should be used instead.
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Field Summary
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Fields inherited from class picard.sam.SetNmMdAndUqTags
INPUT, IS_BISULFITE_SEQUENCE, OUTPUT, SET_ONLY_UQ
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Fields inherited from class picard.cmdline.CommandLineProgram
COMPRESSION_LEVEL, CREATE_INDEX, CREATE_MD5_FILE, GA4GH_CLIENT_SECRETS, MAX_ALLOWABLE_ONE_LINE_SUMMARY_LENGTH, MAX_RECORDS_IN_RAM, QUIET, REFERENCE_SEQUENCE, referenceSequence, specialArgumentsCollection, TMP_DIR, USE_JDK_DEFLATER, USE_JDK_INFLATER, VALIDATION_STRINGENCY, VERBOSITY
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Constructor Summary
Constructors Constructor Description SetNmAndUqTags()
Deprecated.
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Method Summary
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Methods inherited from class picard.sam.SetNmMdAndUqTags
doWork, requiresReference
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Methods inherited from class picard.cmdline.CommandLineProgram
customCommandLineValidation, getCommandLine, getCommandLineParser, getCommandLineParserForArgs, getDefaultHeaders, getFaqLink, getMetricsFile, getPGRecord, getStandardUsagePreamble, getStandardUsagePreamble, getVersion, hasWebDocumentation, instanceMain, instanceMainWithExit, makeReferenceArgumentCollection, parseArgs, setDefaultHeaders, useLegacyParser
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