Package picard.filter
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Class Summary Class Description CountingAdapterFilter Counting filter that discards reads are unaligned or aligned with MQ==0 and whose 5' ends look like adapter SequenceCountingDuplicateFilter Counting filter that discards reads that have been marked as duplicates.CountingFilter A SamRecordFilter that counts the number of bases in the reads which it filters out.CountingMapQFilter Counting filter that discards reads below a configurable mapping quality threshold.CountingPairedFilter Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.