Package picard.vcf
Class GenotypeConcordance.Alleles
- java.lang.Object
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- picard.vcf.GenotypeConcordance.Alleles
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- Enclosing class:
- GenotypeConcordance
protected static class GenotypeConcordance.Alleles extends Object
A simple structure to return the results of getAlleles. NB: truthAllele1/2 and callAllele1/2 may be null if no first or second allele was present respectively.
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Field Summary
Fields Modifier and Type Field Description picard.vcf.OrderedSet<String>
allAlleles
String
callAllele1
String
callAllele2
String
truthAllele1
String
truthAllele2
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description List<htsjdk.variant.variantcontext.Allele>
asList()
List<htsjdk.variant.variantcontext.Allele>
callAlleles()
List<htsjdk.variant.variantcontext.Allele>
truthAlleles()
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