Package picard.vcf.filter
Interface GenotypeFilter
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- All Known Implementing Classes:
DepthFilter
,GenotypeQualityFilter
public interface GenotypeFilter
An interface for classes that perform Genotype filtration. Implementations are expected to take in a VariantContext and a single Genotype and return either null (for no filter) or a specific filter string.
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description String
filter(htsjdk.variant.variantcontext.VariantContext ctx, htsjdk.variant.variantcontext.Genotype gt)
Test whether or not the genotype should be filtered out.
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Method Detail
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filter
String filter(htsjdk.variant.variantcontext.VariantContext ctx, htsjdk.variant.variantcontext.Genotype gt)
Test whether or not the genotype should be filtered out. If so return a filter string, otherwise return null.
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