Package com.pixelmed.convert
Class NIfTI1ToDicom
- java.lang.Object
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- com.pixelmed.convert.NIfTI1ToDicom
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public class NIfTI1ToDicom extends java.lang.Object
A class for converting NIfTI-1 image input format files into images of a specified or appropriate SOP Class.
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Field Summary
Fields Modifier and Type Field Description protected static boolean
preferSForm
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Constructor Summary
Constructors Constructor Description NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static AttributeList
generateDICOMPixelDataModuleAttributesFromNIfTI1File(java.io.File inputFile, NIfTI1Header nifti, AttributeList list)
Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.static AttributeList
generateDimensions(AttributeList list)
Create a Dimensions Module.static AttributeList
generateGeometryFunctionalGroupsFromNIfTI1Header(NIfTI1Header nifti, AttributeList list, int numberOfFrames)
Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.static void
main(java.lang.String[] arg)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
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Constructor Detail
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NIfTI1ToDicom
public NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber) throws java.io.IOException, DicomException, NIfTI1Exception
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
- Parameters:
inputFileName
-outputFileName
-patientName
-patientID
-studyID
-seriesNumber
-instanceNumber
-- Throws:
java.io.IOException
DicomException
NIfTI1Exception
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NIfTI1ToDicom
public NIfTI1ToDicom(java.lang.String inputFileName, java.lang.String outputFileName, java.lang.String patientName, java.lang.String patientID, java.lang.String studyID, java.lang.String seriesNumber, java.lang.String instanceNumber, java.lang.String modality, java.lang.String sopClass) throws java.io.IOException, DicomException, NIfTI1Exception
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
- Parameters:
inputFileName
-outputFileName
-patientName
-patientID
-studyID
-seriesNumber
-instanceNumber
-modality
- may be nullsopClass
- may be null- Throws:
java.io.IOException
DicomException
NIfTI1Exception
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Method Detail
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generateGeometryFunctionalGroupsFromNIfTI1Header
public static AttributeList generateGeometryFunctionalGroupsFromNIfTI1Header(NIfTI1Header nifti, AttributeList list, int numberOfFrames) throws DicomException
Read a per-frame and shared functional group sequences for the geometry defined in a NIfTI-1 file header.
- Parameters:
nifti
- a NIfTI-1 headerlist
- an existing (possibly empty) attribute list, if null, a new one will be created; may already shared and per-frame functional group sequences or they will be addednumberOfFrames
- return attribute list with per-frame and shared functional group sequences for geometry added- Throws:
DicomException
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generateDimensions
public static AttributeList generateDimensions(AttributeList list) throws DicomException
Create a Dimensions Module.
- Parameters:
list
- return attribute list with Dimensions Module added- Throws:
DicomException
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generateDICOMPixelDataModuleAttributesFromNIfTI1File
public static AttributeList generateDICOMPixelDataModuleAttributesFromNIfTI1File(java.io.File inputFile, NIfTI1Header nifti, AttributeList list) throws java.io.IOException, DicomException, NIfTI1Exception
Using a NIfTI-1 image input file and header, create DICOM Pixel Data Module attributes.
- Parameters:
inputFile
- a NIfTI-1 format image filenifti
- a NIfTI-1 header already read from the inputFilelist
- an existing (possibly empty) attribute list, if null, a new one will be created; may already include "better" image pixel module attributes to use return attribute list with Image Pixel Module (including Pixel Data) and other attributes added- Throws:
java.io.IOException
DicomException
NIfTI1Exception
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main
public static void main(java.lang.String[] arg)
Read a NIfTI-1 image input format files and create an image of a specified or appropriate SOP Class.
- Parameters:
arg
- seven, eight or nine parameters, the inputFile, outputFile, patientName, patientID, studyID, seriesNumber, instanceNumber, and optionally the modality, and SOP Class
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