cogent3

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  • The apps
  • Visualisation Capabilities
    • Alignments
    • Trees
  • The Library
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Visualisation Capabilities¶

We use Plotly as our backend for visualisation. It provides excellent graph interactivity in Jupyter notebooks.

Alignments¶

  • Dotplot
  • Dotplot with annotated sequences
  • Counting gaps per sequence
  • Evaluating coevolution
  • Information analysis of an alignment
  • Draw sequence logos

Trees¶

  • Display a Phylogenetic Tree with a Square Dendrogram Style
  • Display a Phylogenetic Tree Showing Bootstrap Support
  • Display a Phylogenetic Tree with a Angular Dendrogram Style
  • Display a Phylogenetic Tree with a Circular Dendrogram Style
  • Display a Phylogenetic Tree with a Radial Dendrogram Style
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