Docs 2020.6.30a
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        • Manipulating biological data
          • Sequences and Alignments
          • Genetic code
          • Trees

    Manipulating biological data¶

    Sequences and Alignments¶

    • Loading an alignment from a file
    • Specifying the sequence molecular type
    • Making an alignment from standard python objects
    • Loading sequences using format parsers
    • Sequence Collections and Alignments
    • Sequence
    • Protein sequences
    • Annotations
    • Annotations with coordinates
    • Molecular types
    • Alphabets

    Genetic code¶

    • Available genetic codes
    • Translate DNA sequences
    • Translate all six frames
    • Find out how many stops in a frame
    • Translate a codon
    • Look up the amino acid corresponding to a single codon
    • Get all the codons for one amino acid
    • Get all the codons for a group of amino acids
    • Converting the CodonAlphabet to codon series
    • Obtaining the codons from a DnaSequence object
    • Translating a DNA sequence with a terminating stop codon

    Trees¶

    • Trees

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