Go to the documentation of this file.
18 #ifndef __RIPLEY_MULTIBRICK_H__
19 #define __RIPLEY_MULTIBRICK_H__
21 #include <ripley/Brick.h>
44 double x1,
double y1,
double z1,
int d0=-1,
int d1=-1,
int d2=-1,
45 const std::vector<double>& points = std::vector<double>(),
46 const std::vector<int>& tags = std::vector<int>(),
49 unsigned int subdivisions = 1
71 void validateInterpolationAcross(
int fsType_source,
78 virtual std::string getDescription()
const;
90 void dump(
const std::string& filename)
const;
108 std::string filename,
109 int byteOrder,
int dataType)
const;
115 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
121 virtual bool ownSample(
int fsType,
index_t id)
const;
143 virtual void Print_Mesh_Info(
const bool full=
false)
const;
175 virtual RankVector getOwnerVector(
int fsType)
const;
178 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
188 virtual void populateSampleIds();
189 virtual std::vector<IndexVector> getConnections(
bool includeShared)
const;
191 dim_t findNode(
const double *coords)
const;
195 template <
typename S>
197 template <
typename S>
200 template <
typename S>
202 template <
typename S>
205 template <
typename S>
207 template <
typename S>
218 #endif // __RIPLEY_MULTIBRICK_H__
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Brick.cpp:475
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
@ ReducedElements
Definition: Ripley.h:55
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
Definition: ripley/src/AbstractAssembler.h:26
virtual void interpolateNodesToNodesFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:143
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:773
dim_t m_faceCount[6]
number of face elements per edge (left, right, bottom, top, front, back)
Definition: ripley/src/Brick.h:311
MPI_Comm getMPIComm() const
returns the MPI communicator
Definition: ripley/src/RipleyDomain.h:158
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:52
Definition: ripley/src/DefaultAssembler3D.h:26
int m_NX[3]
number of spatial subdivisions
Definition: ripley/src/Brick.h:296
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: MultiBrick.cpp:726
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1239
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:776
void validateInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target) const
Checks that the given interpolation is possible, throw RipleyExceptions if not.
Definition: MultiBrick.cpp:110
#define INDEX4(_X1_, _X2_, _X3_, _X4_, _N1_, _N2_, _N3_)
Definition: index.h:27
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Brick.h:363
IndexVector m_faceId
Definition: ripley/src/Brick.h:322
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:777
dim_t m_ownNE[3]
number of own elements for this rank in each dimension
Definition: ripley/src/Brick.h:302
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
RipleyException exception class.
Definition: RipleyException.h:31
@ Points
Definition: Ripley.h:58
const_Domain_ptr getDomain() const
Return the domain.
Definition: Data.h:487
std::map< std::string, int > TagMap
Definition: Ripley.h:47
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:21
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1991
double m_dx[3]
grid spacings / cell sizes of domain
Definition: ripley/src/Brick.h:293
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: MultiBrick.h:162
void interpolateReducedToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:224
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: MultiBrick.cpp:679
@ Nodes
Definition: Ripley.h:52
@ ReducedDegreesOfFreedom
Definition: Ripley.h:51
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: MultiBrick.cpp:598
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: MultiBrick.cpp:1105
@ Elements
Definition: Ripley.h:54
virtual void populateSampleIds()
Definition: MultiBrick.cpp:1131
@ DegreesOfFreedom
Definition: Ripley.h:50
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: MultiBrick.cpp:718
virtual void interpolateReducedToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:206
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Brick.h:204
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: MultiBrick.cpp:1429
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Brick.h:392
void interpolateElementsToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:542
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:779
void interpolateElementsToElementsCoarserWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:464
dim_t m_offset[3]
first node on this rank is at (offset0,offset1,offset2) in global mesh
Definition: ripley/src/Brick.h:308
@ ReducedNodes
Definition: Ripley.h:53
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Brick.cpp:624
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Brick.cpp:1050
Definition: LameAssembler3D.h:26
IndexVector m_faceOffset
Definition: ripley/src/Brick.h:316
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
dim_t m_NE[3]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Brick.h:299
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: MultiBrick.cpp:812
virtual void interpolateNodesToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:304
IndexVector m_nodeDistribution
Definition: ripley/src/Brick.h:325
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Brick.h:358
virtual std::string getDescription() const
returns a description for this domain
Definition: MultiBrick.cpp:674
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:775
std::vector< int > RankVector
Definition: Ripley.h:46
Definition: ripley/src/WaveAssembler3D.h:26
void interpolateNodesToNodesFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:161
Data represents a collection of datapoints.
Definition: Data.h:64
static dim_t nz
Definition: SparseMatrix_saveHB.cpp:37
int m_numDim
Definition: ripley/src/RipleyDomain.h:771
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:25
dim_t m_NN[3]
number of nodes for this rank in each dimension
Definition: ripley/src/Brick.h:305
index_t dim_t
Definition: DataTypes.h:66
#define SECOND_QUAD
Definition: MultiBrick.cpp:27
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1956
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: MultiBrick.cpp:710
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:88
void interpolateReducedToReducedFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:278
double m_length[3]
side lengths of domain
Definition: ripley/src/Brick.h:290
const unsigned int m_subdivisions
Definition: MultiBrick.h:193
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: MultiBrick.cpp:733
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:63
double m_origin[3]
origin of domain
Definition: ripley/src/Brick.h:287
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:117
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: MultiBrick.cpp:702
@ FaceElements
Definition: Ripley.h:56
~MultiBrick()
Destructor.
Definition: MultiBrick.cpp:105
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: MultiBrick.cpp:759
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Brick.h:156
virtual void interpolateElementsToElementsCoarser(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:446
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: MultiBrick.cpp:1088
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1283
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:213
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Brick.cpp:943
void interpolateNodesToElementsFinerWorker(const escript::Data &source, escript::Data &target, const MultiBrick &other, S sentinel) const
Definition: MultiBrick.cpp:322
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:70
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:147
IndexVector m_dofMap
Definition: ripley/src/Brick.h:328
virtual void interpolateElementsToElementsFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:524
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Brick.h:35
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Brick.cpp:1279
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Brick.h:404
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: MultiBrick.cpp:991
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Brick.h:379
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
std::vector< index_t > IndexVector
Definition: Ripley.h:44
Brick is the 3-dimensional implementation of a RipleyDomain.
Definition: MultiBrick.h:30
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Brick.h:398
virtual std::string functionSpaceTypeAsString(int fsType) const
returns a description for the given function space type code
Definition: ripley/src/RipleyDomain.cpp:125
IndexVector m_nodeId
Definition: ripley/src/Brick.h:320
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Brick.cpp:3278
@ ReducedFaceElements
Definition: Ripley.h:57
int indexOfMax(dim_t a, dim_t b, dim_t c)
Definition: ripley/src/Brick.cpp:76
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
void populateDofMap()
Definition: ripley/src/Brick.cpp:3064
IndexVector m_elementId
Definition: ripley/src/Brick.h:321
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:43
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:125
static dim_t M
Definition: SparseMatrix_saveHB.cpp:37
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Brick.cpp:648
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Brick.h:150
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:130
Base class for all escript domains.
Definition: AbstractDomain.h:51
#define FIRST_QUAD
Definition: MultiBrick.cpp:26
#define globalNodeId(x, y, z)
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:122
dim_t m_gNE[3]
total number of elements in each dimension
Definition: ripley/src/Brick.h:284
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:55
std::vector< DiracPoint > m_diracPoints
Definition: ripley/src/RipleyDomain.h:778
virtual unsigned int getNumSubdivisionsPerElement() const
returns the number of times each root element has been subdivided
Definition: MultiBrick.h:149
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: MultiBrick.h:168
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top,front,back) on current MPI ra...
Definition: MultiBrick.h:156
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:857
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Brick.h:319
virtual std::vector< IndexVector > getConnections(bool includeShared) const
returns occupied matrix column indices for all matrix rows
Definition: MultiBrick.cpp:1398
MultiBrick(dim_t n0, dim_t n1, dim_t n2, double x0, double y0, double z0, double x1, double y1, double z1, int d0=-1, int d1=-1, int d2=-1, const std::vector< double > &points=std::vector< double >(), const std::vector< int > &tags=std::vector< int >(), const TagMap &tagnamestonums=TagMap(), escript::SubWorld_ptr w=escript::SubWorld_ptr(), unsigned int subdivisions=1)
creates a hexagonal mesh with n0 x n1 x n2 elements over the brick [x0,x1] x [y0,y1] x [z0,...
Definition: MultiBrick.cpp:54
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: MultiBrick.cpp:694
virtual void interpolateReducedToReducedFiner(const escript::Data &source, escript::Data &target, const MultiBrick &other) const
Definition: MultiBrick.cpp:258
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: MultiBrick.cpp:1436