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18 #ifndef __RIPLEY_RECTANGLE_H__
19 #define __RIPLEY_RECTANGLE_H__
21 #ifdef _WIN32 // for M_1_PI
22 #define _USE_MATH_DEFINES
26 #include <ripley/RipleyDomain.h>
50 const std::vector<double>& points = std::vector<double>(),
51 const std::vector<int>& tags = std::vector<int>(),
66 virtual std::string getDescription()
const;
78 virtual void write(
const std::string& filename)
const;
85 void dump(
const std::string& filename)
const;
105 std::string filename,
106 int byteOrder,
int dataType)
const;
113 const dim_t* borrowSampleReferenceIDs(
int fsType)
const;
119 virtual bool ownSample(
int fsType,
index_t id)
const;
140 virtual dim_t getNumDataPointsGlobal()
const;
147 virtual void Print_Mesh_Info(
const bool full=
false)
const;
184 virtual double getLocalCoordinate(
index_t index,
int dim)
const;
190 virtual boost::python::tuple getGridParameters()
const;
198 const boost::python::tuple& filter)
const;
204 virtual Assembler_ptr createAssembler(std::string type,
224 virtual RankVector getOwnerVector(
int fsType)
const;
227 virtual dim_t getNumNodes()
const;
228 virtual dim_t getNumElements()
const;
229 virtual dim_t getNumFaceElements()
const;
230 virtual dim_t getNumDOF()
const;
231 virtual dim_t getNumDOFInAxis(
unsigned axis)
const;
232 virtual index_t getFirstInDim(
unsigned axis)
const;
234 virtual IndexVector getDiagonalIndices(
bool upperOnly)
const;
238 virtual void assembleIntegrate(std::vector<real_t>& integrals,
240 virtual void assembleIntegrate(std::vector<cplx_t>& integrals,
242 virtual std::vector<IndexVector> getConnections(
bool includeShared=
false)
const;
244 #ifdef ESYS_HAVE_TRILINOS
245 virtual esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph()
const;
248 #ifdef ESYS_HAVE_PASO
250 bool reducedRowOrder,
bool reducedColOrder)
const;
261 virtual void populateSampleIds();
262 virtual void populateDofMap();
264 template<
typename Scalar>
268 template<
typename Scalar>
270 const std::vector<Scalar>& EM_S,
const std::vector<Scalar>& EM_F,
271 bool addS,
bool addF,
index_t firstNode,
int nEq=1,
int nComp=1)
const;
273 template<
typename ValueType>
274 void readBinaryGridImpl(
escript::Data& out,
const std::string& filename,
277 #ifdef ESYS_HAVE_BOOST_IO
278 template<
typename ValueType>
283 template<
typename ValueType>
285 const std::string& filename,
int byteOrder)
const;
287 virtual dim_t findNode(
const double *coords)
const;
291 long seed,
const boost::python::tuple& filter)
const;
339 #ifdef ESYS_HAVE_PASO
344 #ifdef ESYS_HAVE_TRILINOS
345 mutable esys_trilinos::const_TrilinosGraph_ptr m_graph;
349 template<
typename Scalar>
350 void assembleIntegrateImpl(std::vector<Scalar>& integrals,
const escript::Data& arg)
const;
352 template <
typename S>
355 template <
typename S>
358 bool reduced,
S sentinel)
const;
374 ESYS_ASSERT(dim>=0 && dim<2,
"'dim' out of bounds");
381 return boost::python::make_tuple(
383 boost::python::make_tuple(
m_dx[0],
m_dx[1]),
384 boost::python::make_tuple(
m_gNE[0],
m_gNE[1]));
426 #endif // __RIPLEY_RECTANGLE_H__
@ DATATYPE_INT32
Definition: speckley/src/system_dep.h:63
std::map< std::string, int > TagMap
Definition: Speckley.h:46
int MPI_Status
Definition: EsysMPI.h:47
int getNumDataPointsPerSample() const
Return the number of data points per sample.
Definition: Data.h:544
@ ReducedElements
Definition: Ripley.h:55
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
Definition: ripley/src/AbstractAssembler.h:26
escript::JMPI m_mpiInfo
Definition: ripley/src/RipleyDomain.h:773
neighbourID_t sourceID
Definition: blocktools.h:72
virtual std::string getDescription() const
returns a description for this domain
Definition: speckley/src/Rectangle.cpp:197
@ DECOMP_STRICT
Definition: ripley/src/RipleyDomain.h:62
IndexVector m_faceId
Definition: ripley/src/Rectangle.h:331
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:52
char * byte_swap64(char *val)
Definition: ripley/src/system_dep.h:118
std::map< std::string, escript::Data > DataMap
Definition: ripley/src/domainhelpers.h:25
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters ¶ms) const
Definition: ripley/src/Rectangle.cpp:572
Definition: blocktools.h:70
virtual dim_t getNumDOF() const
returns the number of degrees of freedom per MPI rank
Definition: ripley/src/Rectangle.h:388
dim_t m_NN[2]
number of nodes for this rank in each dimension
Definition: ripley/src/Rectangle.h:315
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: speckley/src/Rectangle.cpp:800
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: speckley/src/SpeckleyDomain.cpp:1134
virtual RankVector getOwnerVector(int fsType) const
returns a vector of rank numbers where vec[i]=n means that rank n 'owns' element/face element i.
Definition: ripley/src/Rectangle.cpp:1105
virtual const dim_t * getNumElementsPerDim() const
returns the number of elements per MPI rank in each dimension
Definition: ripley/src/Rectangle.h:159
void requireWrite()
Ensures data is ready for write access. This means that the data will be resolved if lazy and will be...
Definition: Data.cpp:1239
std::vector< int > m_elementTags
Definition: ripley/src/RipleyDomain.h:776
void integral_order4(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:76
IndexVector m_dofMap
Definition: ripley/src/Rectangle.h:337
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: ripley/src/RipleyDomain.h:72
friend class WaveAssembler2D
Definition: ripley/src/Rectangle.h:37
dim_t m_ownNE[2]
number of own elements for this rank in each dimension
Definition: ripley/src/Rectangle.h:312
std::vector< int > m_faceTags
Definition: ripley/src/RipleyDomain.h:777
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/Rectangle.cpp:1112
IndexVector m_dofId
vector of sample reference identifiers
Definition: ripley/src/Rectangle.h:328
boost::shared_ptr< Distribution > Distribution_ptr
Definition: Distribution.h:25
IndexVector m_diracPointNodeIDs
Definition: speckley/src/SpeckleyDomain.h:752
@ DATATYPE_FLOAT64
Definition: speckley/src/system_dep.h:65
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:755
neighbourID_t destID
Definition: blocktools.h:73
#define INDEX2(_X1_, _X2_, _N1_)
Definition: index.h:23
RipleyException exception class.
Definition: RipleyException.h:31
@ Points
Definition: Ripley.h:58
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: speckley/src/Rectangle.cpp:1210
@ DECOMP_ADD_ELEMENTS
Definition: ripley/src/RipleyDomain.h:60
friend class WaveAssembler2D
Definition: speckley/src/Rectangle.h:402
std::map< std::string, int > TagMap
Definition: Ripley.h:47
#define RIPLEY_DLL_API
Definition: ripley/src/system_dep.h:21
const DataTypes::real_t * getSampleDataRO(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0) const
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1991
void factorise(std::vector< int > &factors, int product)
Definition: ripley/src/domainhelpers.cpp:29
dim_t m_gNE[2]
total number of elements in each dimension
Definition: ripley/src/Rectangle.h:294
@ DATATYPE_FLOAT64
Definition: ripley/src/system_dep.h:65
dim_t m_faceCount[4]
number of face elements per edge (left, right, bottom, top)
Definition: speckley/src/Rectangle.h:387
void interpolateElementsOnNodesWorker(escript::Data &out, const escript::Data &in) const
Definition: speckley/src/Rectangle.cpp:1599
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: speckley/src/Rectangle.cpp:1067
@ DATATYPE_INT32
Definition: ripley/src/system_dep.h:63
virtual IndexVector getNodeDistribution() const
returns the node distribution vector
Definition: ripley/src/Rectangle.h:172
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:90
virtual const dim_t * getNumFacesPerBoundary() const
returns the number of face elements in the order (left,right,bottom,top) on current MPI rank
Definition: ripley/src/Rectangle.h:166
void interpolateNodesOnFacesWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Rectangle.cpp:2365
int m_NX[2]
number of spatial subdivisions
Definition: speckley/src/Rectangle.h:375
Domain_ptr getPtr()
Returns smart pointer which is managing this object. If one does not exist yet it creates one.
Definition: AbstractDomain.cpp:25
virtual dim_t getDofOfNode(dim_t node) const
Definition: ripley/src/Rectangle.h:362
@ Nodes
Definition: Ripley.h:52
virtual bool ownSample(int fsType, index_t id) const
returns true if this rank owns the sample id.
Definition: ripley/src/Rectangle.cpp:1057
@ ReducedDegreesOfFreedom
Definition: Ripley.h:51
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: speckley/src/Rectangle.cpp:1072
size_t getNumberOfTaggedValues() const
For tagged Data returns the number of tags with values. For non-tagged data will return 0 (even Data ...
Definition: Data.cpp:5855
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: ripley/src/Rectangle.h:372
@ Elements
Definition: Ripley.h:54
Definition: FileWriter.h:30
const double * getLength() const
returns the lengths of the domain
Definition: ripley/src/Rectangle.h:211
void randomFillArray(long seed, double *array, size_t n)
Definition: Random.cpp:79
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: speckley/src/Rectangle.cpp:881
IndexVector m_nodeDistribution
Definition: speckley/src/Rectangle.h:395
std::vector< int > m_nodeTags
Definition: speckley/src/SpeckleyDomain.h:749
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:64
IndexVector m_elementId
Definition: speckley/src/Rectangle.h:392
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced) const
Definition: speckley/src/Rectangle.cpp:1446
@ DegreesOfFreedom
Definition: Ripley.h:50
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:40
void integral_order3(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:51
escript::Data randomFillWorker(const escript::DataTypes::ShapeType &shape, long seed, const boost::python::tuple &filter) const
Definition: ripley/src/Rectangle.cpp:2584
virtual IndexVector getDiagonalIndices(bool upperOnly) const
returns the indices of the occupied matrix diagonals
Definition: ripley/src/Rectangle.cpp:1766
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:745
@ BYTEORDER_NATIVE
Definition: ripley/src/system_dep.h:50
char * byte_swap32(char *val)
Definition: ripley/src/system_dep.h:111
virtual void interpolateElementsOnNodes(escript::Data &out, const escript::Data &in) const
interpolates data on elements in 'in' onto nodes in 'out'
Definition: speckley/src/Rectangle.cpp:1588
int byteOrder
byte order in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:81
IndexVector m_diracPointNodeIDs
Definition: ripley/src/RipleyDomain.h:779
std::vector< dim_t > numValues
the number of values to read from file
Definition: ripley/src/RipleyDomain.h:74
virtual bool probeInterpolationAcross(int, const escript::AbstractDomain &, int) const
determines whether interpolation from source to target is possible
Definition: speckley/src/Rectangle.cpp:1948
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: speckley/src/Rectangle.cpp:1030
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: speckley/src/SpeckleyDomain.cpp:692
@ ReducedNodes
Definition: Ripley.h:53
virtual void populateSampleIds()
Definition: ripley/src/Rectangle.cpp:1873
const double * getElementLength() const
returns the lengths of an element
Definition: ripley/src/Rectangle.h:217
int getDataPointSize() const
Return the size of the data point. It is the product of the data point shape dimensions.
Definition: Data.cpp:1360
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:55
Definition: FunctionSpace.h:36
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: ripley/src/RipleyDomain.h:142
void integral_order6(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:126
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: speckley/src/Rectangle.cpp:499
dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: speckley/src/Rectangle.cpp:1882
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
int tag
Definition: blocktools.h:74
bool openFile(std::string filename, size_t initialSize=0, bool binary=false, bool append=false)
Definition: FileWriter.h:49
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
IndexVector m_faceOffset
Definition: ripley/src/Rectangle.h:325
Definition: Distribution.h:33
virtual void nodesToDOF(escript::Data &out, const escript::Data &in) const
converts data on nodes in 'in' to degrees of freedom in 'out'
Definition: ripley/src/Rectangle.cpp:1788
IndexVector m_elementId
Definition: ripley/src/Rectangle.h:330
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: ripley/src/Rectangle.h:367
@ BYTEORDER_NATIVE
Definition: speckley/src/system_dep.h:50
std::vector< int > m_nodeTags
Definition: ripley/src/RipleyDomain.h:775
Definition: AbstractAssembler.cpp:19
@ DATATYPE_FLOAT32
Definition: ripley/src/system_dep.h:64
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: speckley/src/Rectangle.h:440
std::vector< int > RankVector
Definition: Ripley.h:46
void copy(dim_t N, double *out, const double *in)
out = in
Definition: PasoUtil.h:88
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:193
double * getOutBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:101
Rectangle is the 2-dimensional implementation of a RipleyDomain.
Definition: ripley/src/Rectangle.h:35
virtual void populateDofMap()
Definition: ripley/src/Rectangle.cpp:2088
virtual void reduceElements(escript::Data &out, const escript::Data &in) const
interpolates from Element -> ReducedElement
Definition: speckley/src/Rectangle.cpp:1383
void populateSampleIds()
Definition: speckley/src/Rectangle.cpp:1292
Data represents a collection of datapoints.
Definition: Data.h:64
std::vector< int > m_elementTags
Definition: speckley/src/SpeckleyDomain.h:750
RipleyDomain extends the AbstractContinuousDomain interface for the Ripley library and is the base cl...
Definition: ripley/src/RipleyDomain.h:103
dim_t m_NN[2]
number of nodes for this rank in each dimension
Definition: speckley/src/Rectangle.h:381
int m_numDim
Definition: ripley/src/RipleyDomain.h:771
An exception class for Input/Output errors.
Definition: EsysException.h:80
int m_NX[2]
number of spatial subdivisions
Definition: ripley/src/Rectangle.h:306
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: speckley/src/Rectangle.cpp:821
#define INDEX3(_X1_, _X2_, _X3_, _N1_, _N2_)
Definition: index.h:25
index_t dim_t
Definition: DataTypes.h:66
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:44
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:62
char * byte_swap64(char *val)
Definition: speckley/src/system_dep.h:118
void integral_order9(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:201
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:44
~Rectangle()
Destructor.
Definition: speckley/src/Rectangle.cpp:189
dim_t m_gNE[2]
total number of elements in each dimension
Definition: speckley/src/Rectangle.h:363
void assembleIntegrateImpl(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: ripley/src/Rectangle.cpp:1597
@ DATATYPE_FLOAT32
Definition: speckley/src/system_dep.h:64
escript::JMPI m_mpiInfo
Definition: speckley/src/SpeckleyDomain.h:747
Definition: blocktools.h:227
DataTypes::real_t * getSampleDataRW(DataTypes::RealVectorType::size_type sampleNo, DataTypes::real_t dummy=0)
Return the sample data for the given sample no. Please do not use this unless you NEED to access samp...
Definition: Data.h:1956
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: speckley/src/Rectangle.cpp:886
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Returns a Data object filled with random data passed through filter.
virtual index_t getFirstInDim(unsigned axis) const
Definition: ripley/src/Rectangle.h:419
escript::Data readBinaryGridFromZipped(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:88
virtual double getLocalCoordinate(index_t index, int dim) const
returns the index'th coordinate value in given dimension for this rank
Definition: speckley/src/Rectangle.h:416
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto elements in 'out'
Definition: speckley/src/Rectangle.cpp:1434
int noValues(const ShapeType &shape)
Calculate the number of values in a datapoint with the given shape.
Definition: DataTypes.cpp:91
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:110
virtual void write(const std::string &filename) const
writes the current mesh to a file with the given name
Definition: ripley/src/Rectangle.cpp:880
void factorise(std::vector< int > &factors, int product)
Definition: speckley/src/domainhelpers.cpp:30
Definition: SystemMatrixPattern.h:45
const dim_t * borrowSampleReferenceIDs(int fsType) const
returns the array of reference numbers for a function space type
Definition: ripley/src/Rectangle.cpp:1031
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:63
~Rectangle()
Destructor.
Definition: ripley/src/Rectangle.cpp:241
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:86
std::vector< int > multiplier
Definition: ripley/src/RipleyDomain.h:77
@ ReducedElements
Definition: Speckley.h:64
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: ripleycpp.cpp:117
bool isDataPointShapeEqual(int rank, const int *dimensions) const
Returns true if the shape matches the vector (dimensions[0],..., dimensions[rank-1])....
Definition: Data.h:567
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:122
double m_dx[2]
grid spacings / cell sizes of domain
Definition: speckley/src/Rectangle.h:372
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: ripley/src/Rectangle.cpp:1250
double * getInBuffer(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:111
void doublyLink(std::vector< ripley::IndexVector > &va, std::vector< ripley::IndexVector > &vb, int a, int b)
Definition: ripley/src/domainhelpers.h:50
virtual const int * getNumSubdivisionsPerDim() const
returns the number of spatial subdivisions in each dimension
Definition: ripley/src/Rectangle.h:178
#define globalNodeId(x, y)
@ FaceElements
Definition: Ripley.h:56
bool numSamplesEqual(int numDataPointsPerSample, int numSamples) const
Returns true if the number of data points per sample and the number of samples match the respective a...
Definition: Data.h:555
virtual dim_t getNumDOFInAxis(unsigned axis) const
Definition: ripley/src/Rectangle.h:394
Definition: ripley/src/DefaultAssembler2D.h:26
static DecompositionPolicy getDecompositionPolicy()
Definition: ripley/src/RipleyDomain.cpp:58
Rectangle is the 2-dimensional implementation of a SpeckleyDomain.
Definition: speckley/src/Rectangle.h:34
void addToMatrixAndRHS(escript::AbstractSystemMatrix *S, escript::Data &F, const std::vector< Scalar > &EM_S, const std::vector< Scalar > &EM_F, bool addS, bool addF, index_t firstNode, int nEq=1, int nComp=1) const
Definition: ripley/src/Rectangle.cpp:2228
void integral_order8(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:176
Definition: CrossDomainCoupler.h:29
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: ripley/src/Rectangle.h:407
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: ripley/src/Rectangle.cpp:1145
@ DegreesOfFreedom
Definition: Speckley.h:59
virtual int getContinuousFunctionCode() const
returns a continuous FunctionSpace code
Definition: ripley/src/RipleyDomain.h:400
void updateTagsInUse(int fsType) const
Definition: ripley/src/RipleyDomain.cpp:1283
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: ripley/src/RipleyDomain.h:213
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
returns a Data object filled with random data passed through filter.
virtual void Print_Mesh_Info(const bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/Rectangle.cpp:1312
@ Elements
Definition: Speckley.h:63
void interpolateFromCorners(escript::Data &out) const
Definition: speckley/src/Rectangle.cpp:759
void updateTagsInUse(int fsType) const
Definition: speckley/src/SpeckleyDomain.cpp:844
void integral_order7(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:151
Structure that wraps parameters for the grid reading routines.
Definition: ripley/src/RipleyDomain.h:70
virtual dim_t getNumDataPointsGlobal() const
returns the number of data points summed across all MPI processes
Definition: speckley/src/Rectangle.h:411
#define MPI_DOUBLE
Definition: EsysMPI.h:49
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:147
virtual dim_t getNumElements() const
returns the number of elements per MPI rank
Definition: speckley/src/Rectangle.h:446
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:66
size_t getBuffSize(unsigned char subx, unsigned char suby)
Definition: blocktools2.cpp:121
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: speckley/src/Rectangle.cpp:202
virtual void assembleIntegrate(std::vector< real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by 'arg' into 'integrals'
Definition: ripley/src/Rectangle.cpp:1582
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
void interpolateNodesOnElementsWorker(escript::Data &out, const escript::Data &in, bool reduced, S sentinel) const
Definition: ripley/src/Rectangle.cpp:2302
std::vector< index_t > IndexVector
Definition: Ripley.h:44
dim_t m_offset[2]
first node on this rank is at (offset0,offset1) in global mesh
Definition: ripley/src/Rectangle.h:318
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: ripley/src/RipleyDomain.h:79
void assembleIntegrateWorker(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: speckley/src/Rectangle.cpp:1225
virtual Assembler_ptr createAssembler(std::string type, const DataMap &options) const
creates and returns an assembler of the requested type.
Definition: ripley/src/Rectangle.cpp:2799
double m_origin[2]
origin of domain
Definition: speckley/src/Rectangle.h:366
dim_t m_faceCount[4]
number of face elements per edge (left, right, bottom, top)
Definition: ripley/src/Rectangle.h:321
IndexVector m_nodeId
Definition: speckley/src/Rectangle.h:391
virtual bool operator==(const escript::AbstractDomain &other) const
equality operator
Definition: ripley/src/Rectangle.cpp:250
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: ripley/src/Rectangle.cpp:527
Definition: LameAssembler2D.h:26
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:60
void addPoints(const std::vector< double > &coords, const std::vector< int > &tags)
Definition: ripley/src/RipleyDomain.cpp:1834
double m_dx[2]
grid spacings / cell sizes of domain
Definition: ripley/src/Rectangle.h:303
friend class DefaultAssembler2D
Definition: speckley/src/Rectangle.h:401
void assembleGradientImpl(escript::Data &out, const escript::Data &in) const
Definition: ripley/src/Rectangle.cpp:1364
void integral_order5(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:101
friend class LameAssembler2D
Definition: ripley/src/Rectangle.h:38
virtual const dim_t * getNumNodesPerDim() const
returns the number of nodes per MPI rank in each dimension
Definition: ripley/src/Rectangle.h:153
dim_t m_NE[2]
number of elements for this rank in each dimension including shared
Definition: ripley/src/Rectangle.h:309
@ ReducedFaceElements
Definition: Ripley.h:57
virtual std::vector< IndexVector > getConnections(bool includeShared=false) const
returns occupied matrix column indices for all matrix rows
Definition: ripley/src/Rectangle.cpp:2035
virtual void writeBinaryGrid(const escript::Data &in, std::string filename, int byteOrder, int dataType) const
writes a Data object to a file in raw binary format
Definition: ripley/src/Rectangle.cpp:789
void setUsed(unsigned char buffid)
Definition: blocktools2.cpp:216
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: speckley/src/Rectangle.cpp:1151
virtual std::string getDescription() const
returns a description for this domain
Definition: ripley/src/Rectangle.cpp:245
Definition: blocktools.h:207
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
virtual dim_t getNumFaceElements() const
returns the number of face elements on current MPI rank
Definition: ripley/src/Rectangle.h:413
IndexVector m_nodeDistribution
Definition: ripley/src/Rectangle.h:334
void readBinaryGridImpl(escript::Data &out, const std::string &filename, const ReaderParameters ¶ms) const
Definition: speckley/src/Rectangle.cpp:524
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:116
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:43
IndexVector m_nodeId
Definition: ripley/src/Rectangle.h:329
virtual void readBinaryGrid(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a raw binary file into a Data object
Definition: speckley/src/Rectangle.cpp:479
double m_length[2]
side lengths of domain
Definition: ripley/src/Rectangle.h:300
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:53
int MPI_Request
Definition: EsysMPI.h:45
virtual dim_t findNode(const double *coords) const
finds the node that the given point coordinates belong to
Definition: ripley/src/Rectangle.cpp:2747
Definition: ripley/src/WaveAssembler2D.h:26
void integral_order2(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:25
@ Points
Definition: Speckley.h:67
real_t real_t_eps()
Returns the machine epsilon for the real_t type.
Definition: DataTypes.h:99
boost::shared_ptr< Connector > Connector_ptr
Definition: Coupler.h:38
boost::shared_ptr< Pattern > Pattern_ptr
Definition: Pattern.h:39
double m_origin[2]
origin of domain
Definition: ripley/src/Rectangle.h:297
virtual dim_t getNumNodes() const
returns the number of nodes per MPI rank
Definition: ripley/src/Rectangle.h:401
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: ripley/src/RipleyDomain.h:130
bool actsExpanded() const
Return true if this Data is expanded or resolves to expanded. That is, if it has a separate value for...
Definition: Data.cpp:1118
Base class for all escript domains.
Definition: AbstractDomain.h:51
dim_t m_NE[2]
number of elements for this rank in each dimension including shared
Definition: speckley/src/Rectangle.h:378
virtual bool ownSample(int fs_code, index_t id) const
returns true if this rank owns the sample id.
Definition: speckley/src/Rectangle.cpp:1050
int getMPIRankWorld()
returns the MPI processor number within MPI_COMM_WORLD
Definition: Utils.cpp:105
#define S(_J_, _I_)
Definition: ShapeFunctions.cpp:122
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: speckley/src/Rectangle.cpp:357
void dump(const std::string &filename) const
dumps the mesh to a file with the given name
Definition: ripley/src/Rectangle.cpp:885
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:57
virtual void readNcGrid(escript::Data &out, std::string filename, std::string varname, const ReaderParameters ¶ms) const
reads grid data from a netCDF file into a Data object
Definition: ripley/src/Rectangle.cpp:404
DataTypes::RealVectorType & getExpandedVectorReference(DataTypes::real_t dummy=0)
Ensures that the Data is expanded and returns its underlying vector Does not check for exclusive writ...
Definition: Data.cpp:5837
virtual void readBinaryGridFromZipped(escript::Data &out, std::string filename, const ReaderParameters ¶ms) const
reads grid data from a compressed raw binary file into a Data object
Definition: ripley/src/Rectangle.cpp:547
void close()
Definition: FileWriter.h:199
unsigned char destbuffid
Definition: blocktools.h:76
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:55
dim_t m_offset[2]
first node on this rank is at (offset0,offset1) in global mesh
Definition: speckley/src/Rectangle.h:384
void writeBinaryGridImpl(const escript::Data &in, const std::string &filename, int byteOrder) const
Definition: ripley/src/Rectangle.cpp:810
Data Scalar(double value, const FunctionSpace &what, bool expanded)
A collection of factory functions for creating Data objects which contain data points of various shap...
Definition: DataFactory.cpp:49
virtual void interpolateNodesOnElements(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) elements in 'out'
Definition: ripley/src/Rectangle.cpp:2263
unsigned char srcbuffid
Definition: blocktools.h:75
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:25
int dataType
data type in the file (used by binary reader only)
Definition: ripley/src/RipleyDomain.h:83
#define ESYS_ASSERT(a, b)
EsysAssert is a MACRO that will throw an exception if the boolean condition specified is false.
Definition: Assert.h:79
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains
Definition: speckley/src/Rectangle.cpp:1959
void copyAllToBuffer(double *src)
Definition: blocktools2.cpp:221
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: speckley/src/Rectangle.cpp:1129
bool writeAt(std::ostringstream &oss, long offset)
Definition: FileWriter.h:174
An exception class that signals an invalid argument value.
Definition: EsysException.h:100
const double point_locations[][11]
Definition: Speckley.h:71
double m_length[2]
side lengths of domain
Definition: speckley/src/Rectangle.h:369
SpeckleyException exception class.
Definition: SpeckleyException.h:31
void integral_order10(std::vector< Scalar > &, const escript::Data &) const
Definition: RectangleIntegrals.cpp:226
char * byte_swap32(char *val)
Definition: speckley/src/system_dep.h:111
#define MATRIX_FORMAT_DEFAULT
Definition: Paso.h:61
virtual void Print_Mesh_Info(bool full=false) const
writes information about the mesh to standard output
Definition: ripley/src/RipleyDomain.cpp:857
virtual boost::python::tuple getGridParameters() const
returns the tuple (origin, spacing, number_of_elements)
Definition: ripley/src/Rectangle.h:379
virtual void assembleCoordinates(escript::Data &arg) const
populates the data object 'arg' with the node coordinates
Definition: ripley/src/Rectangle.cpp:1329
@ DECOMP_EXPAND
Definition: ripley/src/RipleyDomain.h:61
static const ShapeType scalarShape
Use this instead of creating empty shape objects for scalars.
Definition: DataTypes.h:48
void generateInNeighbours(coord_t blockx, coord_t blocky, messvec &v)
Definition: blocktools2.cpp:35
virtual void interpolateNodesOnFaces(escript::Data &out, const escript::Data &in, bool reduced) const
interpolates data on nodes in 'in' onto (reduced) face elements in 'out'
Definition: ripley/src/Rectangle.cpp:2282
void copyUsedFromBuffer(double *dest)
Definition: blocktools2.cpp:234
virtual Assembler_ptr createAssembler(std::string type, const DataMap &options) const
Creates and returns an assembler of the requested type.
Definition: speckley/src/Rectangle.cpp:1936
void generateOutNeighbours(coord_t blockx, coord_t blocky, messvec &v)
Definition: blocktools2.cpp:68
virtual void assembleGradient(escript::Data &out, const escript::Data &in) const
computes the gradient of 'in' and puts the result in 'out'
Definition: ripley/src/Rectangle.cpp:1351
@ Nodes
Definition: Speckley.h:61