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DudleyDomain.h
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1 
2 /*****************************************************************************
3 *
4 * Copyright (c) 2003-2020 by The University of Queensland
5 * http://www.uq.edu.au
6 *
7 * Primary Business: Queensland, Australia
8 * Licensed under the Apache License, version 2.0
9 * http://www.apache.org/licenses/LICENSE-2.0
10 *
11 * Development until 2012 by Earth Systems Science Computational Center (ESSCC)
12 * Development 2012-2013 by School of Earth Sciences
13 * Development from 2014-2017 by Centre for Geoscience Computing (GeoComp)
14 * Development from 2019 by School of Earth and Environmental Sciences
15 **
16 *****************************************************************************/
17 
18 #ifndef __DUDLEY_DOMAIN_H__
19 #define __DUDLEY_DOMAIN_H__
20 
21 /****************************************************************************
22 
23  Dudley: Domain
24 
25  A mesh is built from nodes and elements which describe the domain, surface,
26  and point sources (the latter are needed to establish links with other
27  codes, in particular particle codes). The nodes are stored in a NodeFile
28  and elements in ElementFiles. Dudley domains have three ElementFiles
29  containing the elements, surface and point sources, respectively.
30  Notice that the surface elements do not necessarily cover the entire
31  surface of the domain.
32 
33  The element type is either Tri3 or Tet4 depending on dimensionality
34  and also determines the type of surface elements to be used.
35 
36  The numbering of the nodes starts with 0.
37 
38  Important: it is assumed that every node appears in at least one element or
39  surface element and that any node used in an element, surface element or as
40  a point is specified in the NodeFile, see also resolveNodeIds.
41 
42  All nodes and elements are tagged. The tag allows to group nodes and
43  elements. A typical application is to mark surface elements on a
44  certain portion of the domain with the same tag. All these surface
45  elements can then be assigned the same value e.g. for the pressure.
46 
47 *****************************************************************************/
48 
49 #include "system_dep.h"
50 
51 #include <dudley/Dudley.h>
52 #include <dudley/ElementFile.h>
53 #include <dudley/NodeFile.h>
54 #include <dudley/Util.h>
55 
56 #include <escript/AbstractContinuousDomain.h>
57 #include <escript/FunctionSpace.h>
58 #include <escript/FunctionSpaceFactory.h>
59 
60 #ifdef ESYS_HAVE_PASO
61 #include <paso/SystemMatrixPattern.h>
62 #endif
63 #ifdef ESYS_HAVE_TRILINOS
64 #include <trilinoswrap/types.h>
65 #endif
66 
67 #include <map>
68 #include <string>
69 #include <vector>
70 
71 namespace dudley {
72 
73 typedef std::map<std::string, int> TagMap;
74 
76  SMT_PASO = 1<<8,
77  SMT_TRILINOS = 1<<10,
78  SMT_COMPLEX = 1<<16,
79  SMT_UNROLL = 1<<17
80 };
81 
88 {
89 public:
95  static escript::Domain_ptr load(const std::string& filename);
96 
105  static escript::Domain_ptr read(escript::JMPI mpiInfo,
106  const std::string& filename, bool optimize);
107 
117  const std::string& filename, int numDim,
118  bool optimize);
119 
131  static escript::Domain_ptr create2D(dim_t NE0, dim_t NE1, double l0,
132  double l1, bool optimize,
133  escript::JMPI jmpi);
134 
148  static escript::Domain_ptr create3D(dim_t NE0, dim_t NE1, dim_t NE2,
149  double l0, double l1, double l2,
150  bool optimize, escript::JMPI jmpi);
151 
160  DudleyDomain(const std::string& name, int numDim, escript::JMPI jmpi);
161 
166  DudleyDomain(const DudleyDomain& in);
167 
172  ~DudleyDomain();
173 
178  NodeFile* getNodes() const { return m_nodes; }
179 
184  void setElements(ElementFile* elements);
185 
190  ElementFile* getElements() const { return m_elements; }
191 
196  void setFaceElements(ElementFile* elements);
197 
202  ElementFile* getFaceElements() const { return m_faceElements; }
203 
208  void setPoints(ElementFile* elements);
209 
214  ElementFile* getPoints() const { return m_points; }
215 
220  virtual escript::JMPI getMPI() const { return m_mpiInfo; }
221 
226  virtual int getMPISize() const { return m_mpiInfo->size; }
227 
232  virtual int getMPIRank() const { return m_mpiInfo->rank; }
233 
238  virtual void MPIBarrier() const;
239 
244  virtual bool onMasterProcessor() const { return getMPIRank() == 0; }
245 
246  MPI_Comm getMPIComm() const { return m_mpiInfo->comm; }
247 
254  void write(const std::string& fileName) const;
255 
260  void Print_Mesh_Info(bool full=false) const;
261 
267  void dump(const std::string& fileName) const;
268 
275  int getTagFromSampleNo(int functionSpaceType, index_t sampleNo) const;
276 
282  const index_t* borrowSampleReferenceIDs(int functionSpaceType) const;
283 
289  virtual bool isValidFunctionSpaceType(int functionSpaceType) const;
290 
295  virtual std::string getDescription() const;
296 
301  virtual std::string functionSpaceTypeAsString(int functionSpaceType) const;
302 
307  void setFunctionSpaceTypeNames();
308 
313  virtual int getContinuousFunctionCode() const;
314 
319  virtual int getReducedContinuousFunctionCode() const;
320 
325  virtual int getFunctionCode() const;
326 
331  virtual int getReducedFunctionCode() const;
332 
337  virtual int getFunctionOnBoundaryCode() const;
338 
343  virtual int getReducedFunctionOnBoundaryCode() const;
344 
349  virtual int getFunctionOnContactZeroCode() const;
350 
355  virtual int getReducedFunctionOnContactZeroCode() const;
356 
361  virtual int getFunctionOnContactOneCode() const;
362 
367  virtual int getReducedFunctionOnContactOneCode() const;
368 
373  virtual int getSolutionCode() const;
374 
379  virtual int getReducedSolutionCode() const;
380 
385  virtual int getDiracDeltaFunctionsCode() const;
386 
390  typedef std::map<int, std::string> FunctionSpaceNamesMapType;
391 
395  virtual int getDim() const { return m_nodes->numDim; }
396 
403  virtual StatusType getStatus() const;
404 
409  virtual dim_t getNumDataPointsGlobal() const;
410 
416  virtual std::pair<int,dim_t> getDataShape(int functionSpaceCode) const;
417 
423  virtual void setToX(escript::Data& arg) const;
424 
431  virtual void setTagMap(const std::string& name, int tag);
432 
438  virtual int getTag(const std::string& name) const;
439 
445  virtual bool isValidTagName(const std::string& name) const;
446 
451  virtual std::string showTagNames() const;
452 
457  virtual void setNewX(const escript::Data& arg);
458 
463  virtual void interpolateOnDomain(escript::Data& target,
464  const escript::Data& source) const;
465 
466  virtual bool probeInterpolationOnDomain(int functionSpaceType_source,
467  int functionSpaceType_target) const;
468 
469  virtual signed char preferredInterpolationOnDomain(int functionSpaceType_source, int functionSpaceType_target) const;
470 
475  bool commonFunctionSpace(const std::vector<int>& fs, int& resultcode) const;
476 
481  virtual void interpolateAcross(escript::Data& target, const escript::Data& source) const;
482 
486  virtual bool probeInterpolationAcross(int functionSpaceType_source,
487  const escript::AbstractDomain& targetDomain,
488  int functionSpaceType_target) const;
489 
495  virtual void setToNormal(escript::Data& out) const;
496 
502  virtual void setToSize(escript::Data& out) const;
503 
509  virtual void setToGradient(escript::Data& grad, const escript::Data& arg) const;
510 
516  virtual void setToIntegrals(std::vector<escript::DataTypes::real_t>& integrals,
517  const escript::Data& arg) const;
518  virtual void setToIntegrals(std::vector<escript::DataTypes::cplx_t>& integrals,
519  const escript::Data& arg) const;
520 
529  virtual int getSystemMatrixTypeId(const boost::python::object& options) const;
530 
540  virtual int getTransportTypeId(int solver, int preconditioner, int package,
541  bool symmetry) const;
542 
548  virtual bool isCellOriented(int functionSpaceCode) const;
549 
550  virtual bool ownSample(int fsCode, index_t id) const;
551 
556  virtual void addPDEToSystem(
558  const escript::Data& A, const escript::Data& B,
559  const escript::Data& C, const escript::Data& D,
560  const escript::Data& X, const escript::Data& Y,
561  const escript::Data& d, const escript::Data& y,
562  const escript::Data& d_contact,
563  const escript::Data& y_contact,
564  const escript::Data& d_dirac,
565  const escript::Data& y_dirac) const;
566 
571  virtual void addPDEToLumpedSystem(escript::Data& mat,
572  const escript::Data& D,
573  const escript::Data& d,
574  const escript::Data& d_dirac,
575  bool useHRZ) const;
576 
581  virtual void addPDEToRHS(escript::Data& rhs, const escript::Data& X,
582  const escript::Data& Y, const escript::Data& y,
583  const escript::Data& y_contact,
584  const escript::Data& y_dirac) const;
585 
590  virtual void addPDEToTransportProblem(
592  escript::Data& source, const escript::Data& M,
593  const escript::Data& A, const escript::Data& B,
594  const escript::Data& C, const escript::Data& D,
595  const escript::Data& X, const escript::Data& Y,
596  const escript::Data& d, const escript::Data& y,
597  const escript::Data& d_contact,
598  const escript::Data& y_contact,
599  const escript::Data& d_dirac,
600  const escript::Data& y_dirac) const;
601 
606  escript::ASM_ptr newSystemMatrix(
607  int row_blocksize,
608  const escript::FunctionSpace& row_functionspace,
609  int column_blocksize,
610  const escript::FunctionSpace& column_functionspace,
611  int type) const;
612 
617  escript::ATP_ptr newTransportProblem(int blocksize,
618  const escript::FunctionSpace& functionspace,
619  int type) const;
620 
624  virtual escript::Data getX() const;
625 
629 #ifdef ESYS_HAVE_BOOST_NUMPY
630  boost::python::numpy::ndarray getNumpyX() const;
631 
632  boost::python::numpy::ndarray getConnectivityInfo() const;
633 #endif
634 
639  virtual escript::Data getNormal() const;
640 
644  virtual escript::Data getSize() const;
645 
649  virtual bool operator==(const escript::AbstractDomain& other) const;
650  virtual bool operator!=(const escript::AbstractDomain& other) const;
651 
656  virtual void setTags(int functionSpaceType, int newTag,
657  const escript::Data& mask) const;
658 
664  virtual int getNumberOfTagsInUse(int functionSpaceCode) const;
665 
666  virtual const int* borrowListOfTagsInUse(int functionSpaceCode) const;
667 
672  virtual bool canTag(int functionSpaceCode) const;
673 
677  virtual int getApproximationOrder(int functionSpaceCode) const;
678 
679  virtual bool supportsContactElements() const { return false; }
680 
681  virtual escript::Data randomFill(const escript::DataTypes::ShapeType& shape,
682  const escript::FunctionSpace& what, long seed,
683  const boost::python::tuple& filter) const;
684 
685  void createMappings(const std::vector<index_t>& dofDistribution,
686  const std::vector<index_t>& nodeDistribution);
687 
690  void relabelElementNodes(const index_t* newNode, index_t offset);
691 
692  template<typename Scalar>
693  void setToIntegralsWorker(std::vector<Scalar>& integrals,
694  const escript::Data& arg) const;
695 
696 #ifdef ESYS_HAVE_PASO
697  paso::SystemMatrixPattern_ptr getPasoPattern() const;
699 #endif
700 
701 #ifdef ESYS_HAVE_TRILINOS
702  esys_trilinos::const_TrilinosGraph_ptr getTrilinosGraph() const {
704  return m_nodes->getTrilinosGraph();
705  }
706 #endif
707 
708 private:
709  void prepare(bool optimize);
710 
718  void resolveNodeIds();
719 
720 #ifdef ESYS_HAVE_PASO
721  paso::SystemMatrixPattern_ptr makePasoPattern() const;
722 #endif
723 
724  void createColoring(const index_t* dofMap);
725  void distributeByRankOfDOF(const IndexVector& distribution);
726  void markNodes(std::vector<short>& mask, index_t offset) const;
727  void optimizeDOFDistribution(IndexVector& distribution);
728  void optimizeDOFLabeling(const IndexVector& distribution);
729  void optimizeElementOrdering();
730  void updateTagList();
731  void printElementInfo(const ElementFile* e, const std::string& title,
732  const std::string& defaultType, bool full) const;
733 
734  void writeElementInfo(std::ostream& stream, const ElementFile* e,
735  const std::string& defaultType) const;
736 
740  std::string m_name;
751 #ifdef ESYS_HAVE_PASO
752  // pointer to the sparse matrix pattern
753  mutable paso::SystemMatrixPattern_ptr pasoPattern;
754 #endif
755 
757 };
758 
759 } // end of namespace
760 
761 #endif // __DUDLEY_DOMAIN_H__
762 
dudley::NodeFile::globalDegreesOfFreedom
index_t * globalDegreesOfFreedom
Definition: dudley/src/NodeFile.h:157
dudley::SMT_COMPLEX
@ SMT_COMPLEX
Definition: DudleyDomain.h:78
dudley::DudleyDomain::getFaceElements
ElementFile * getFaceElements() const
returns a pointer to this domain's face element file
Definition: DudleyDomain.h:202
dudley::DudleyDomain::setToIntegralsWorker
void setToIntegralsWorker(std::vector< Scalar > &integrals, const escript::Data &arg) const
Definition: DudleyDomain.cpp:1310
escript::SolverOptions
SolverOptions
Definition: SolverOptions.h:82
MPI_Status
int MPI_Status
Definition: EsysMPI.h:47
escript::SolverBuddy
Definition: SolverOptions.h:161
escript::Data::isComplex
bool isComplex() const
True if components of this data are stored as complex.
Definition: Data.cpp:1160
dudley::DudleyDomain::MPIBarrier
virtual void MPIBarrier() const
If compiled for MPI then execute an MPI_Barrier, else do nothing.
Definition: DudleyDomain.cpp:100
escript::FunctionSpace::getSize
escript::Data getSize() const
Returns the sample size (e.g. the diameter of elements, radius of particles).
Definition: FunctionSpace.cpp:295
dudley::ElementFile::Tag
int * Tag
Tag[i] is the tag of element i.
Definition: dudley/src/ElementFile.h:121
dudley::DudleyDomain::m_mpiInfo
escript::JMPI m_mpiInfo
MPI information.
Definition: DudleyDomain.h:738
dudley::DudleyDomain::updateTagList
void updateTagList()
regenerates list of tags in use for node file and element files
Definition: DudleyDomain.cpp:2177
escript::DataTypes::real_t
double real_t
type of all real-valued scalars in escript
Definition: DataTypes.h:52
dudley::Points
@ Points
Definition: Dudley.h:58
REGISTER_ESCRIPT_EXCEPTION_TRANSLATORS
#define REGISTER_ESCRIPT_EXCEPTION_TRANSLATORS
Definition: ExceptionTranslators.h:27
dudley::SMT_PASO
@ SMT_PASO
Definition: DudleyDomain.h:76
dudley::Assemble_LumpedSystem
void Assemble_LumpedSystem(const NodeFile *nodes, const ElementFile *elements, escript::Data &lumpedMat, const escript::Data &D, bool useHRZ)
Definition: dudley/src/Assemble_LumpedSystem.cpp:26
getTag
int getTag(unsigned char sourcex, unsigned char sourcey, unsigned char sourcez, unsigned char targetx, unsigned char targety, unsigned char targetz)
Definition: blocktools.cpp:413
dudley::DudleyDomain::interpolateAcross
virtual void interpolateAcross(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target are given on different domains.
Definition: DudleyDomain.cpp:1287
dudley::DudleyDomain::getDataShape
virtual std::pair< int, dim_t > getDataShape(int functionSpaceCode) const
Return the number of data points per sample, and the number of samples as a pair.
Definition: DudleyDomain.cpp:887
dudley::NodeFile::nodesDistribution
escript::Distribution_ptr nodesDistribution
MPI distribution of nodes.
Definition: dudley/src/NodeFile.h:164
dudley::DudleyException
Definition: DudleyException.h:26
dudley::NodeFile::numDim
int numDim
number of spatial dimensions
Definition: dudley/src/NodeFile.h:146
dudley::ElementFile::createColoring
void createColoring(dim_t numNodes, const index_t *degreeOfFreedom)
Definition: ElementFile_createColoring.cpp:25
dudley::Assemble_getNormal
void Assemble_getNormal(const NodeFile *nodes, const ElementFile *elements, escript::Data &normals)
calculates the normal vector at quadrature points on face elements
Definition: dudley/src/Assemble_getNormal.cpp:26
dudley::DudleyDomain::getNumberOfTagsInUse
virtual int getNumberOfTagsInUse(int functionSpaceCode) const
returns the number of tags in use and a pointer to an array with the number of tags in use
Definition: DudleyDomain.cpp:2004
paso::SystemMatrix
this class holds a (distributed) stiffness matrix
Definition: SystemMatrix.h:50
dudley::DudleyDomain::onMasterProcessor
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: DudleyDomain.h:244
dudley::NodeFile
Definition: dudley/src/NodeFile.h:40
escript::SO_METHOD_DIRECT
@ SO_METHOD_DIRECT
Definition: SolverOptions.h:102
dudley::NodeFile::createNodeMappings
void createNodeMappings(const IndexVector &dofDistribution, const IndexVector &nodeDistribution)
Definition: NodeFile_createMappings.cpp:224
dudley::NodeFile::setCoordinates
void setCoordinates(const escript::Data &newX)
Definition: dudley/src/NodeFile.cpp:172
dudley::Nodes
@ Nodes
Definition: Dudley.h:53
dudley::readGmsh
Domain_ptr readGmsh(const string &fileName, int numDim, int, int, bool optimize)
reads a gmsh mesh file
Definition: dudley/src/DomainFactory.cpp:681
dudley::DudleyDomain::m_name
std::string m_name
domain description
Definition: DudleyDomain.h:740
dudley::DudleyDomain::addPDEToRHS
virtual void addPDEToRHS(escript::Data &rhs, const escript::Data &X, const escript::Data &Y, const escript::Data &y, const escript::Data &y_contact, const escript::Data &y_dirac) const
adds a PDE onto the stiffness matrix mat and a rhs
Definition: DudleyDomain.cpp:992
dudley::DudleyDomain::write
void write(const std::string &fileName) const
writes the current mesh to a file with the given name in the fly file format.
Definition: dudley/src/Mesh_write.cpp:84
dudley::DudleyDomain::load
static escript::Domain_ptr load(const std::string &filename)
recovers domain from a dump file
Definition: dudley/src/DomainFactory.cpp:366
dudley::NodeFile::borrowTargetDegreesOfFreedom
const index_t * borrowTargetDegreesOfFreedom() const
returns the mapping from local degrees of freedom to a target
Definition: dudley/src/NodeFile.h:234
escript::SolverBuddy::getPackage
SolverOptions getPackage() const
Definition: SolverOptions.cpp:513
escript::continuousFunction
FunctionSpace continuousFunction(const AbstractDomain &domain)
Create function space objects.
Definition: FunctionSpaceFactory.cpp:31
dudley::ElementFile::Nodes
index_t * Nodes
Nodes[INDEX(k, i, numNodes)] is the k-th node in the i-th element.
Definition: dudley/src/ElementFile.h:133
dudley::DudleyDomain::setElements
void setElements(ElementFile *elements)
replaces the element file by elements
Definition: DudleyDomain.cpp:107
escript::NotImplementedError
An exception class for features which are not (yet) implemented.
Definition: EsysException.h:90
dudley::DudleyDomain::getContinuousFunctionCode
virtual int getContinuousFunctionCode() const
Return a continuous FunctionSpace code.
Definition: DudleyDomain.cpp:810
dudley::DudleyDomain::getElements
ElementFile * getElements() const
returns a pointer to this domain's element file
Definition: DudleyDomain.h:190
escript::DataTypes::DataVectorAlt< real_t >
dudley::DudleyDomain::m_elements
ElementFile * m_elements
the table of the elements
Definition: DudleyDomain.h:744
escript::SolverBuddy::getSolverMethod
SolverOptions getSolverMethod() const
Definition: SolverOptions.cpp:441
escript::randomFillArray
void randomFillArray(long seed, double *array, size_t n)
Definition: Random.cpp:79
dudley::SMT_TRILINOS
@ SMT_TRILINOS
Definition: DudleyDomain.h:77
dudley::DudleyDomain::setToX
virtual void setToX(escript::Data &arg) const
copies the location of data points into arg. The domain of arg has to match this. has to be implement...
Definition: DudleyDomain.cpp:1249
dudley::NodeFile::getNumNodes
dim_t getNumNodes() const
returns the number of FEM nodes (on this rank)
Definition: dudley/src/NodeFile.h:204
escript::AbstractDomain::StatusType
int StatusType
Definition: AbstractDomain.h:53
dudley::NodeFile::createDenseDOFLabeling
dim_t createDenseDOFLabeling()
Definition: NodeFile_createDenseLabelings.cpp:22
paso::SystemMatrixPattern_ptr
boost::shared_ptr< SystemMatrixPattern > SystemMatrixPattern_ptr
Definition: SystemMatrixPattern.h:40
dudley::DudleyDomain::dump
void dump(const std::string &fileName) const
dumps the mesh to a file with the given name.
Definition: DudleyDomain.cpp:465
dudley::DudleyDomain::DudleyDomain
DudleyDomain(const std::string &name, int numDim, escript::JMPI jmpi)
Constructor for DudleyDomain.
Definition: DudleyDomain.cpp:69
dudley::DudleyDomain::getMPIRank
virtual int getMPIRank() const
returns the number MPI rank of this processor
Definition: DudleyDomain.h:232
dudley::DudleyDomain::probeInterpolationOnDomain
virtual bool probeInterpolationOnDomain(int functionSpaceType_source, int functionSpaceType_target) const
True if interpolation is possible from source to target.
Definition: DudleyDomain.cpp:1648
paso::TransportProblem::borrowTransportMatrix
SystemMatrix_ptr< double > borrowTransportMatrix() const
Definition: Transport.h:65
MATRIX_FORMAT_COMPLEX
#define MATRIX_FORMAT_COMPLEX
Definition: Paso.h:66
dudley::ElementFile::Owner
int * Owner
Owner[i] contains the rank that owns element i.
Definition: dudley/src/ElementFile.h:124
escript::Domain_ptr
boost::shared_ptr< AbstractDomain > Domain_ptr
Definition: AbstractDomain.h:41
escript::AbstractTransportProblem
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:45
dudley::DudleyDomain::createMappings
void createMappings(const std::vector< index_t > &dofDistribution, const std::vector< index_t > &nodeDistribution)
Definition: DudleyDomain.cpp:125
dudley::DudleyDomain::getStatus
virtual StatusType getStatus() const
Returns a status indicator of the domain. The status identifier should be unique over the live time i...
Definition: DudleyDomain.cpp:2076
dudley::NodeFile::updateTagList
void updateTagList()
Definition: dudley/src/NodeFile.h:239
dudley::DegreesOfFreedom
@ DegreesOfFreedom
Definition: Dudley.h:52
dudley::NodeFile::setTags
void setTags(int newTag, const escript::Data &mask)
set tags to newTag where mask > 0
Definition: dudley/src/NodeFile.cpp:201
dudley::DudleyDomain::functionSpaceTypeAsString
virtual std::string functionSpaceTypeAsString(int functionSpaceType) const
Return a description for the given function space type code.
Definition: DudleyDomain.cpp:774
escript::SO_PRECONDITIONER_ILUT
@ SO_PRECONDITIONER_ILUT
Definition: SolverOptions.h:122
dudley::Assemble_NodeCoordinates
void Assemble_NodeCoordinates(const NodeFile *nodes, escript::Data &x)
copies node coordinates into expanded Data object x
Definition: dudley/src/Assemble_NodeCoordinates.cpp:27
dudley::ElementFile::markNodes
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: dudley/src/ElementFile.cpp:228
dudley::NodeFile::getLastNode
index_t getLastNode() const
Definition: dudley/src/NodeFile.h:189
escript::SolverBuddy::isComplex
bool isComplex() const
Definition: SolverOptions.cpp:679
dudley::DudleyDomain::getReducedFunctionOnContactZeroCode
virtual int getReducedFunctionOnContactZeroCode() const
Return a FunctionOnContactZero code with reduced integration order.
Definition: DudleyDomain.cpp:845
escript::FunctionSpace
Definition: FunctionSpace.h:36
dudley::DudleyDomain::operator==
virtual bool operator==(const escript::AbstractDomain &other) const
comparison operators
Definition: DudleyDomain.cpp:1723
escript::Data::getFunctionSpace
const FunctionSpace & getFunctionSpace() const
Return the function space.
Definition: Data.h:463
dudley::NodeFile::status
int status
Definition: dudley/src/NodeFile.h:177
dudley::SystemMatrixType
SystemMatrixType
Definition: DudleyDomain.h:75
dudley::Elements
@ Elements
Definition: Dudley.h:54
speckley::probeInterpolationAcross
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:32
dudley::DudleyDomain::getDiracDeltaFunctionsCode
virtual int getDiracDeltaFunctionsCode() const
Return a DiracDeltaFunctions code.
Definition: DudleyDomain.cpp:870
escript::FunctionSpace::getDomain
const_Domain_ptr getDomain() const
Returns the function space domain.
Definition: FunctionSpace.cpp:103
MPI_INT
#define MPI_INT
Definition: EsysMPI.h:48
weipa::VisItControl::initialize
bool initialize(const std::string &simFile, const std::string &comment)
Definition: VisItControl.cpp:178
dudley::DudleyDomain::setToSize
virtual void setToSize(escript::Data &out) const
copies the size of samples into out. The actual function space to be considered is defined by out....
Definition: DudleyDomain.cpp:1392
paso::SystemMatrix_ptr
boost::shared_ptr< SystemMatrix< T > > SystemMatrix_ptr
Definition: SystemMatrix.h:42
dudley::DudleyDomain::m_points
ElementFile * m_points
the table of points (treated as elements of dimension 0)
Definition: DudleyDomain.h:748
dudley::rectangle_driver
Domain_ptr rectangle_driver(const bp::list &args)
Definition: dudley/src/DomainFactory.cpp:754
DUDLEY_DLL_API
#define DUDLEY_DLL_API
Definition: dudley/src/system_dep.h:29
dudley::IndexList_insertElements
void IndexList_insertElements(IndexList *index_list, const ElementFile *elements, const index_t *map)
Definition: dudley/src/IndexList.cpp:35
dudley::DudleyDomain::interpolateOnDomain
virtual void interpolateOnDomain(escript::Data &target, const escript::Data &source) const
interpolates data given on source onto target where source and target have to be given on the same do...
Definition: DudleyDomain.cpp:1058
escript::FunctionSpace::getNormal
escript::Data getNormal() const
Returns the surface normal field.
Definition: FunctionSpace.cpp:286
dudley::NodeFile::getNumDegreesOfFreedomTargets
dim_t getNumDegreesOfFreedomTargets() const
returns the number of degrees of freedom targets (own and shared)
Definition: dudley/src/NodeFile.h:214
dudley::DudleyDomain::getFunctionCode
virtual int getFunctionCode() const
Return a function FunctionSpace code.
Definition: DudleyDomain.cpp:820
dudley
A suite of factory methods for creating 2D and 3D dudley domains.
Definition: dudley/src/Assemble.h:32
dudley::DudleyDomain::m_functionSpaceTypeNames
static FunctionSpaceNamesMapType m_functionSpaceTypeNames
Definition: DudleyDomain.h:756
dudley::DudleyDomain::getSize
virtual escript::Data getSize() const
returns the element size
Definition: DudleyDomain.cpp:1873
dudley::Assemble_getSize
void Assemble_getSize(const NodeFile *nodes, const ElementFile *elements, escript::Data &size)
Definition: dudley/src/Assemble_getSize.cpp:25
escript::Data
Data represents a collection of datapoints.
Definition: Data.h:64
paso::TransportProblem_ptr
boost::shared_ptr< TransportProblem > TransportProblem_ptr
Definition: Transport.h:32
dudley::DudleyDomain::getFunctionOnContactOneCode
virtual int getFunctionOnContactOneCode() const
Return a FunctionOnContactOne code.
Definition: DudleyDomain.cpp:850
paso::util::l2
double l2(dim_t n, const double *x, escript::JMPI mpiinfo)
returns the global L2 norm of x
Definition: PasoUtil.cpp:501
escript::AbstractSystemMatrix::getPtr
ASM_ptr getPtr()
Returns smart pointer which is managing this object. If one does not exist yet it creates one.
Definition: AbstractSystemMatrix.cpp:42
dudley::DudleyDomain::getPoints
ElementFile * getPoints() const
returns a pointer to this domain's point (nodal) element file
Definition: DudleyDomain.h:214
escript::FunctionSpace::getX
escript::Data getX() const
Returns the spatial locations of the data points.
Definition: FunctionSpace.cpp:229
escript::DataTypes::dim_t
index_t dim_t
Definition: DataTypes.h:66
escript::DataTypes::ShapeType
std::vector< int > ShapeType
The shape of a single datapoint.
Definition: DataTypes.h:44
dudley::ElementFile::numElements
dim_t numElements
number of elements
Definition: dudley/src/ElementFile.h:113
escript::JMPI
boost::shared_ptr< JMPI_ > JMPI
Definition: EsysMPI.h:74
escript::ATP_ptr
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:161
escript::AbstractSystemMatrix
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:44
dudley::ElementFile
Definition: dudley/src/ElementFile.h:53
dudley::NodeFile::tagsInUse
std::vector< int > tagsInUse
vector of tags which are actually used
Definition: dudley/src/NodeFile.h:152
dudley::DudleyDomain::addPDEToSystem
virtual void addPDEToSystem(escript::AbstractSystemMatrix &mat, escript::Data &rhs, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto the stiffness matrix mat and a rhs
Definition: DudleyDomain.cpp:945
dudley::DudleyDomain::optimizeDOFDistribution
void optimizeDOFDistribution(IndexVector &distribution)
Definition: dudley/src/Mesh_optimizeDOFDistribution.cpp:64
dudley::TagMap
std::map< std::string, int > TagMap
Definition: DudleyDomain.h:73
dudley::DudleyDomain::randomFill
virtual escript::Data randomFill(const escript::DataTypes::ShapeType &shape, const escript::FunctionSpace &what, long seed, const boost::python::tuple &filter) const
Fills the data object with filtered random values.
Definition: DudleyDomain.cpp:2101
dudley::readMesh
Domain_ptr readMesh(const string &fileName, int, int, bool optimize)
reads a mesh from a fly file. For MPI parallel runs fans out the mesh to multiple processes.
Definition: dudley/src/DomainFactory.cpp:674
dudley::DudleyDomain::m_nodes
NodeFile * m_nodes
the table of the nodes
Definition: DudleyDomain.h:742
dudley::ElementFile::Id
index_t * Id
Definition: dudley/src/ElementFile.h:118
dudley::DudleyDomain::getReducedContinuousFunctionCode
virtual int getReducedContinuousFunctionCode() const
Return a continuous on reduced order nodes FunctionSpace code.
Definition: DudleyDomain.cpp:815
dudley::DudleyDomain::markNodes
void markNodes(std::vector< short > &mask, index_t offset) const
Definition: DudleyDomain.cpp:151
dudley::DudleyDomain::optimizeDOFLabeling
void optimizeDOFLabeling(const IndexVector &distribution)
optimizes the labeling of the DOFs on each processor
Definition: Mesh_optimizeDOFLabeling.cpp:26
dudley::DudleyDomain::newSystemMatrix
escript::ASM_ptr newSystemMatrix(int row_blocksize, const escript::FunctionSpace &row_functionspace, int column_blocksize, const escript::FunctionSpace &column_functionspace, int type) const
creates a stiffness matrix and initializes it with zeros
Definition: DudleyDomain.cpp:1457
dudley::DudleyDomain::setToIntegrals
virtual void setToIntegrals(std::vector< escript::DataTypes::real_t > &integrals, const escript::Data &arg) const
copies the integrals of the function defined by arg into integrals. arg has to be defined on this.
dudley::DudleyDomain::getReducedSolutionCode
virtual int getReducedSolutionCode() const
Return a ReducedSolution code.
Definition: DudleyDomain.cpp:865
dudley::NodeFile::createDenseNodeLabeling
dim_t createDenseNodeLabeling(IndexVector &nodeDistribution, const IndexVector &dofDistribution)
dudley::DudleyDomain::m_tagMap
TagMap m_tagMap
the tag map mapping names to tag keys
Definition: DudleyDomain.h:750
paso::TransportProblem::borrowMassMatrix
SystemMatrix_ptr< double > borrowMassMatrix() const
Definition: Transport.h:70
dudley::DudleyDomain::Print_Mesh_Info
void Print_Mesh_Info(bool full=false) const
Definition: dudley/src/Mesh_write.cpp:140
escript::Data::isEmpty
bool isEmpty() const
Definition: Data.cpp:1132
dudley::DudleyDomain::getFunctionOnBoundaryCode
virtual int getFunctionOnBoundaryCode() const
Return a function on boundary FunctionSpace code.
Definition: DudleyDomain.cpp:830
dudley::DudleyDomain::getNodes
NodeFile * getNodes() const
returns a pointer to this domain's node file
Definition: DudleyDomain.h:178
dudley::DudleyDomain::FunctionSpaceNamesMapType
std::map< int, std::string > FunctionSpaceNamesMapType
Definition: DudleyDomain.h:390
dudley::DudleyDomain::getTagFromSampleNo
int getTagFromSampleNo(int functionSpaceType, index_t sampleNo) const
Return the tag key for the given sample number.
Definition: DudleyDomain.cpp:1912
dudley::DudleyDomain::isCellOriented
virtual bool isCellOriented(int functionSpaceCode) const
returns true if data on this domain and a function space of type functionSpaceCode has to considered ...
Definition: DudleyDomain.cpp:1544
dudley::DudleyDomain::getTag
virtual int getTag(const std::string &name) const
Return the tag key for tag name.
Definition: DudleyDomain.cpp:1975
dudley::DudleyDomain::borrowListOfTagsInUse
virtual const int * borrowListOfTagsInUse(int functionSpaceCode) const
Definition: DudleyDomain.cpp:2026
dudley::DudleyDomain::newTransportProblem
escript::ATP_ptr newTransportProblem(int blocksize, const escript::FunctionSpace &functionspace, int type) const
creates a TransportProblem
Definition: DudleyDomain.cpp:1517
dudley::ElementFile::optimizeOrdering
void optimizeOrdering()
reorders the elements so that they are stored close to the nodes
Definition: dudley/src/ElementFile.cpp:164
dudley::DudleyDomain::canTag
virtual bool canTag(int functionSpaceCode) const
Checks if this domain allows tags for the specified functionSpace code.
Definition: DudleyDomain.cpp:2061
escript::SO_PRECONDITIONER_AMG
@ SO_PRECONDITIONER_AMG
Definition: SolverOptions.h:119
paso::TransportProblem
Definition: Transport.h:38
dudley::DudleyDomain::getReducedFunctionCode
virtual int getReducedFunctionCode() const
Return a function with reduced integration order FunctionSpace code.
Definition: DudleyDomain.cpp:825
dudley::ElementFile::updateTagList
void updateTagList()
Definition: dudley/src/ElementFile.h:175
paso::TransportProblem::getTypeId
static int getTypeId(int solver, int preconditioner, int package, bool symmetry, const escript::JMPI &mpi_info)
Definition: Transport.h:95
dudley::DudleyDomain::getTransportTypeId
virtual int getTransportTypeId(int solver, int preconditioner, int package, bool symmetry) const
return the identifier of the transport problem type to be used when a particular solver,...
Definition: DudleyDomain.cpp:1807
dudley::ReducedElements
@ ReducedElements
Definition: Dudley.h:55
dudley::Assemble_integrate
void Assemble_integrate(const NodeFile *nodes, const ElementFile *elements, const escript::Data &data, std::vector< Scalar > &integrals)
integrates data on quadrature points
Definition: dudley/src/Assemble_integrate.cpp:29
dudley::NodeFile::getFirstNode
index_t getFirstNode() const
Definition: dudley/src/NodeFile.h:184
dudley::NodeFile::getGlobalNumNodes
dim_t getGlobalNumNodes() const
Definition: dudley/src/NodeFile.h:194
escript::SolverBuddy::isSymmetric
bool isSymmetric() const
Definition: SolverOptions.cpp:689
dudley::DudleyDomain::setToNormal
virtual void setToNormal(escript::Data &out) const
copies the surface normals at data points into out. The actual function space to be considered is def...
Definition: DudleyDomain.cpp:1268
dudley::DudleyDomain::showTagNames
virtual std::string showTagNames() const
Returns all tag names in a single string sperated by commas.
Definition: DudleyDomain.cpp:1991
dudley::DudleyDomain::setToIntegrals
virtual void setToIntegrals(std::vector< escript::DataTypes::cplx_t > &integrals, const escript::Data &arg) const
paso::SystemMatrix::getSystemMatrixTypeId
static int getSystemMatrixTypeId(int solver, int preconditioner, int package, bool is_complex, bool symmetry, const escript::JMPI &mpi_info)
Definition: SystemMatrix.h:504
dudley::brick_driver
Domain_ptr brick_driver(const bp::list &args)
Definition: dudley/src/DomainFactory.cpp:712
dudley::DudleyDomain::ownSample
virtual bool ownSample(int fsCode, index_t id) const
Definition: DudleyDomain.cpp:1433
escript::SolverBuddy::getPreconditioner
SolverOptions getPreconditioner() const
Definition: SolverOptions.cpp:358
escript::load
Data load(const std::string fileName, const AbstractDomain &domain)
reads Data on domain from file in netCDF format
Definition: DataFactory.cpp:708
escript::isDirectSolver
bool isDirectSolver(const SolverOptions &method)
returns true if the passed solver method refers to a direct solver type
Definition: SolverOptions.h:145
dudley::DudleyDomain::getApproximationOrder
virtual int getApproximationOrder(int functionSpaceCode) const
returns the approximation order used for a function space functionSpaceCode
Definition: DudleyDomain.cpp:2081
dudley::DudleyDomain::getMPISize
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: DudleyDomain.h:226
dudley::DudleyDomain::probeInterpolationAcross
virtual bool probeInterpolationAcross(int functionSpaceType_source, const escript::AbstractDomain &targetDomain, int functionSpaceType_target) const
determines whether interpolation from source to target is possible.
Definition: DudleyDomain.cpp:1717
dudley::ElementFile::relabelNodes
void relabelNodes(const index_t *newNode, index_t offset)
Definition: dudley/src/ElementFile.cpp:238
dudley::ElementFile::numLocalDim
int numLocalDim
dimension of the element e.g. 2 for a line in 2D or 3D
Definition: dudley/src/ElementFile.h:150
dudley::FaceElements
@ FaceElements
Definition: Dudley.h:56
escript::RuntimeErrorTranslator
void RuntimeErrorTranslator(const EsysException &e)
Function which translates an EsysException into a python RuntimeError.
Definition: ExceptionTranslators.cpp:37
escript::DataTypes::index_t
int index_t
type for array/matrix indices used both globally and on each rank
Definition: DataTypes.h:61
dudley::NodeFile::dofDistribution
escript::Distribution_ptr dofDistribution
MPI distribution of degrees of freedom.
Definition: dudley/src/NodeFile.h:167
dudley::DudleyDomain::createColoring
void createColoring(const index_t *dofMap)
tries to reduce the number of colours for all element files
Definition: DudleyDomain.cpp:2161
dudley::DudleyDomain::setTagMap
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: DudleyDomain.cpp:1970
escript::DataTypes::DataVectorAlt::size
size_type size() const
Return the number of elements in this DataVectorAlt.
Definition: DataVectorAlt.h:215
dudley::DudleyDomain::getMPI
virtual escript::JMPI getMPI() const
returns a reference to the MPI information wrapper for this domain
Definition: DudleyDomain.h:220
dudley::DudleyDomain::setNewX
virtual void setNewX(const escript::Data &arg)
assigns new location to the domain
Definition: DudleyDomain.cpp:1420
dudley::DudleyDomain::relabelElementNodes
void relabelElementNodes(const index_t *newNode, index_t offset)
Definition: DudleyDomain.cpp:158
dudley::ReducedFaceElements
@ ReducedFaceElements
Definition: Dudley.h:57
dudley::DudleyDomain::getNumDataPointsGlobal
virtual dim_t getNumDataPointsGlobal() const
Return the number of data points summed across all MPI processes.
Definition: DudleyDomain.cpp:878
dudley::DudleyDomain::setFunctionSpaceTypeNames
void setFunctionSpaceTypeNames()
Build the table of function space type names.
Definition: DudleyDomain.cpp:792
dudley::DudleyDomain::setPoints
void setPoints(ElementFile *elements)
replaces the point element file by elements
Definition: DudleyDomain.cpp:119
dudley::DudleyDomain::addPDEToTransportProblem
virtual void addPDEToTransportProblem(escript::AbstractTransportProblem &tp, escript::Data &source, const escript::Data &M, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto a transport problem
Definition: DudleyDomain.cpp:1015
dudley::DudleyDomain::addPDEToLumpedSystem
virtual void addPDEToLumpedSystem(escript::Data &mat, const escript::Data &D, const escript::Data &d, const escript::Data &d_dirac, bool useHRZ) const
adds a PDE onto the lumped stiffness matrix matrix
Definition: DudleyDomain.cpp:978
escript::SO_DEFAULT
@ SO_DEFAULT
Definition: SolverOptions.h:83
dudley::DudleyDomain::getSolutionCode
virtual int getSolutionCode() const
Return a Solution code.
Definition: DudleyDomain.cpp:860
dudley::DudleyDomain::getSystemMatrixTypeId
virtual int getSystemMatrixTypeId(const boost::python::object &options) const
return the identifier of the matrix type to be used for the global stiffness matrix when a particular...
Definition: DudleyDomain.cpp:1740
escript::FunctionSpace::getTypeCode
int getTypeCode() const
Returns the function space type code.
Definition: FunctionSpace.cpp:95
dudley::DudleyDomain::getMPIComm
MPI_Comm getMPIComm() const
get the communicator for this domain. Returns an integer on non-MPI builds Routine must be implemente...
Definition: DudleyDomain.h:246
dudley::DudleyDomain::distributeByRankOfDOF
void distributeByRankOfDOF(const IndexVector &distribution)
Definition: Mesh_distributeByRankOfDOF.cpp:25
dudley::DudleyDomain
DudleyDomain implements the AbstractContinuousDomain interface for the Dudley library.
Definition: DudleyDomain.h:88
escript::function
FunctionSpace function(const AbstractDomain &domain)
Return a function FunctionSpace.
Definition: FunctionSpaceFactory.cpp:43
escript::Vector
Data Vector(double value, const FunctionSpace &what, bool expanded)
Return a Data object containing vector data-points. ie: rank 1 data-points.
Definition: DataFactory.cpp:125
dudley::NodeFile::Id
index_t * Id
Id[i] is the unique ID number of FEM node i.
Definition: dudley/src/NodeFile.h:148
dudley::DudleyDomain::operator!=
virtual bool operator!=(const escript::AbstractDomain &other) const
Return true if given domains are not equal.
Definition: DudleyDomain.cpp:1735
dudley::DudleyDomain::optimizeElementOrdering
void optimizeElementOrdering()
redistributes elements to minimize communication during assemblage
Definition: DudleyDomain.cpp:2169
paso::M
static dim_t M
Definition: SparseMatrix_saveHB.cpp:37
dudley::DudleyDomain::getFunctionOnContactZeroCode
virtual int getFunctionOnContactZeroCode() const
Return a FunctionOnContactZero code.
Definition: DudleyDomain.cpp:840
dudley::NodeFile::Tag
int * Tag
Tag[i] is the tag of node i.
Definition: dudley/src/NodeFile.h:150
dudley::DudleyDomain::getDescription
virtual std::string getDescription() const
Return a description for this domain.
Definition: DudleyDomain.cpp:769
escript::functionOnBoundary
FunctionSpace functionOnBoundary(const AbstractDomain &domain)
Return a function on boundary FunctionSpace.
Definition: FunctionSpaceFactory.cpp:55
dudley::DudleyDomain::supportsContactElements
virtual bool supportsContactElements() const
Definition: DudleyDomain.h:679
dudley::DudleyDomain::prepare
void prepare(bool optimize)
prepares the mesh for further use
Definition: DudleyDomain.cpp:2115
MPI_Comm
int MPI_Comm
Definition: EsysMPI.h:44
dudley::ElementFile::Color
index_t * Color
Definition: dudley/src/ElementFile.h:138
dudley::DudleyDomain::setFaceElements
void setFaceElements(ElementFile *elements)
replaces the face element file by elements
Definition: DudleyDomain.cpp:113
dudley::SMT_UNROLL
@ SMT_UNROLL
Definition: DudleyDomain.h:79
dudley::DudleyDomain::isValidTagName
virtual bool isValidTagName(const std::string &name) const
Returns true if name is a defined tag name.
Definition: DudleyDomain.cpp:1986
escript::AbstractDomain
Base class for all escript domains.
Definition: AbstractDomain.h:51
dudley::DudleyDomain::getDim
virtual int getDim() const
Returns the spatial dimension of the domain.
Definition: DudleyDomain.h:395
dudley::Assemble_PDE
void Assemble_PDE(const NodeFile *nodes, const ElementFile *elements, escript::ASM_ptr S, escript::Data &F, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y)
Definition: dudley/src/Assemble_PDE.cpp:84
dudley::DudleyDomain::getReducedFunctionOnBoundaryCode
virtual int getReducedFunctionOnBoundaryCode() const
Return a function on boundary with reduced integration order FunctionSpace code.
Definition: DudleyDomain.cpp:835
dudley::DudleyDomain::setToGradient
virtual void setToGradient(escript::Data &grad, const escript::Data &arg) const
copies the gradient of arg into grad. The actual function space to be considered for the gradient is ...
Definition: DudleyDomain.cpp:1345
escript::IndexList
Definition: escriptcore/src/IndexList.h:29
dudley::DudleyDomain::isValidFunctionSpaceType
virtual bool isValidFunctionSpaceType(int functionSpaceType) const
Returns true if the given integer is a valid function space type for this domain.
Definition: DudleyDomain.cpp:785
dudley::NodeFile::borrowGlobalNodesIndex
const index_t * borrowGlobalNodesIndex() const
Definition: dudley/src/NodeFile.h:199
escript::Data::getExpandedVectorReference
DataTypes::RealVectorType & getExpandedVectorReference(DataTypes::real_t dummy=0)
Ensures that the Data is expanded and returns its underlying vector Does not check for exclusive writ...
Definition: Data.cpp:5837
dudley::DudleyDomain::commonFunctionSpace
bool commonFunctionSpace(const std::vector< int > &fs, int &resultcode) const
given a vector of FunctionSpace typecodes, pass back a code which then can all be interpolated to.
Definition: DudleyDomain.cpp:1564
escript::SO_PACKAGE_TRILINOS
@ SO_PACKAGE_TRILINOS
Definition: SolverOptions.h:92
escript::ASM_ptr
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:33
system_dep.h
escript::DataTypes::cplx_t
std::complex< real_t > cplx_t
complex data type
Definition: DataTypes.h:55
dudley::ElementFile::setTags
void setTags(int newTag, const escript::Data &mask)
sets element tags to newTag where mask > 0
Definition: dudley/src/ElementFile.cpp:193
escript::Data::expand
void expand()
Whatever the current Data type make this into a DataExpanded.
Definition: Data.cpp:1180
dudley::NodeFile::degreesOfFreedomId
index_t * degreesOfFreedomId
Definition: dudley/src/NodeFile.h:173
dudley::DudleyDomain::setTags
virtual void setTags(int functionSpaceType, int newTag, const escript::Data &mask) const
assigns new tag newTag to all samples of functionspace with a positive value of mask for any its samp...
Definition: DudleyDomain.cpp:1942
dudley::DudleyDomain::getReducedFunctionOnContactOneCode
virtual int getReducedFunctionOnContactOneCode() const
Return a FunctionOnContactOne code with reduced integration order.
Definition: DudleyDomain.cpp:855
dudley::NodeFile::getNumDegreesOfFreedom
dim_t getNumDegreesOfFreedom() const
returns the number of degrees of freedom (on this rank)
Definition: dudley/src/NodeFile.h:209
dudley::NodeFile::Coordinates
double * Coordinates
Coordinates[INDEX2(k,i,numDim)] is the k-th coordinate of node i.
Definition: dudley/src/NodeFile.h:159
dudley::ElementFile::tagsInUse
std::vector< int > tagsInUse
array of tags which are actually used
Definition: dudley/src/ElementFile.h:127
escript::ValueError
An exception class that signals an invalid argument value.
Definition: EsysException.h:100
dudley::ElementFile::etype
ElementTypeId etype
element type ID
Definition: dudley/src/ElementFile.h:153
dudley::DudleyDomain::preferredInterpolationOnDomain
virtual signed char preferredInterpolationOnDomain(int functionSpaceType_source, int functionSpaceType_target) const
Preferred direction of interpolation. If you really need to test for a particular direction,...
Definition: DudleyDomain.cpp:1706
dudley::DudleyDomain::m_faceElements
ElementFile * m_faceElements
the table of face elements
Definition: DudleyDomain.h:746
escript::AbstractContinuousDomain
AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:47
dudley::DudleyDomain::getX
virtual escript::Data getX() const
returns locations in the FEM nodes
Definition: DudleyDomain.cpp:1819
dudley::ElementFile::numNodes
int numNodes
number of nodes per element
Definition: dudley/src/ElementFile.h:130
dudley::NodeFile::globalNodesIndex
index_t * globalNodesIndex
assigns each local node a global unique ID in a dense labeling
Definition: dudley/src/NodeFile.h:161
dudley::DudleyDomain::~DudleyDomain
~DudleyDomain()
Destructor for DudleyDomain.
Definition: DudleyDomain.cpp:92
escript::DataTypes::IndexVector
std::vector< index_t > IndexVector
Definition: DataTypes.h:64
dudley::DudleyDomain::getNormal
virtual escript::Data getNormal() const
returns locations in the FEM nodes as a numpy ndarray
Definition: DudleyDomain.cpp:1868
dudley::DudleyDomain::borrowSampleReferenceIDs
const index_t * borrowSampleReferenceIDs(int functionSpaceType) const
Return the reference number of the given sample number.
Definition: DudleyDomain.cpp:1878
BOOST_PYTHON_MODULE
BOOST_PYTHON_MODULE(dudleycpp)
Definition: dudleycpp.cpp:32