RDKit
Open-source cheminformatics and machine learning.
AcidBaseCatalogParams.h
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1 //
2 // Copyright (C) 2018 Susan H. Leung
3 //
4 // @@ All Rights Reserved @@
5 // This file is part of the RDKit.
6 // The contents are covered by the terms of the BSD license
7 // which is included in the file license.txt, found at the root
8 // of the RDKit source tree.
9 //
10 #include <RDGeneral/export.h>
11 #ifndef __RD_ACIDBASE_CATALOG_PARAMS_H__
12 #define __RD_ACIDBASE_CATALOG_PARAMS_H__
13 
14 #include <Catalogs/CatalogParams.h>
15 #include "AcidBaseCatalogUtils.h"
16 #include <GraphMol/RDKitBase.h>
17 #include <string>
18 #include <vector>
19 #include <iostream>
20 
21 namespace RDKit {
22 class ROMol;
23 
24 namespace MolStandardize {
26  : public RDCatalog::CatalogParams {
27  public:
29  d_typeStr = "AcidBase Catalog Parameters";
30  d_pairs.clear();
31  }
32 
33  AcidBaseCatalogParams(const std::string &acidBaseFile);
34  AcidBaseCatalogParams(std::istream &acidBaseFile);
35  // copy constructor
37 
39 
40  unsigned int getNumPairs() const {
41  return static_cast<unsigned int>(d_pairs.size());
42  }
43 
44  const std::vector<std::pair<ROMOL_SPTR, ROMOL_SPTR>> &getPairs() const;
45 
46  const std::pair<ROMOL_SPTR, ROMOL_SPTR> getPair(unsigned int fid) const;
47 
48  void toStream(std::ostream &) const override;
49  std::string Serialize() const override;
50  void initFromStream(std::istream &ss) override;
51  void initFromString(const std::string &text) override;
52 
53  private:
54  std::vector<std::pair<ROMOL_SPTR, ROMOL_SPTR>> d_pairs;
55 
56 }; // class AcidBaseCatalogParams
57 
58 } // namespace MolStandardize
59 } // namespace RDKit
60 
61 #endif
RDKit::MolStandardize::AcidBaseCatalogParams::AcidBaseCatalogParams
AcidBaseCatalogParams(const AcidBaseCatalogParams &other)
RDKit::MolStandardize::AcidBaseCatalogParams::initFromString
void initFromString(const std::string &text) override
initializes from a string pickle
RDKit::MolStandardize::AcidBaseCatalogParams::~AcidBaseCatalogParams
~AcidBaseCatalogParams() override
RDKit::MolStandardize::AcidBaseCatalogParams::AcidBaseCatalogParams
AcidBaseCatalogParams()
Definition: AcidBaseCatalogParams.h:28
RDKit::MolStandardize::AcidBaseCatalogParams::toStream
void toStream(std::ostream &) const override
serializes (pickles) to a stream
RDKit::MolStandardize::AcidBaseCatalogParams::getPairs
const std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > & getPairs() const
RDKit::MolStandardize::AcidBaseCatalogParams::getPair
const std::pair< ROMOL_SPTR, ROMOL_SPTR > getPair(unsigned int fid) const
RDKitBase.h
pulls in the core RDKit functionality
RDKit::MolStandardize::AcidBaseCatalogParams::AcidBaseCatalogParams
AcidBaseCatalogParams(std::istream &acidBaseFile)
CatalogParams.h
RDKit::MolStandardize::AcidBaseCatalogParams::initFromStream
void initFromStream(std::istream &ss) override
initializes from a stream pickle
RDCatalog::CatalogParams
abstract base class for the container used to create a catalog
Definition: CatalogParams.h:18
RDKit
Std stuff.
Definition: Atom.h:30
RDKit::MolStandardize::AcidBaseCatalogParams::Serialize
std::string Serialize() const override
returns a string with a serialized (pickled) representation
RDKit::MolStandardize::AcidBaseCatalogParams::AcidBaseCatalogParams
AcidBaseCatalogParams(const std::string &acidBaseFile)
AcidBaseCatalogUtils.h
RDKit::MolStandardize::AcidBaseCatalogParams
Definition: AcidBaseCatalogParams.h:26
RDKIT_MOLSTANDARDIZE_EXPORT
#define RDKIT_MOLSTANDARDIZE_EXPORT
Definition: export.h:437
RDKit::MolStandardize::AcidBaseCatalogParams::getNumPairs
unsigned int getNumPairs() const
Definition: AcidBaseCatalogParams.h:40
export.h