SeqAn3
The Modern C++ library for sequence analysis.
all.hpp
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// -----------------------------------------------------------------------------------------------------
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// Copyright (c) 2006-2019, Knut Reinert & Freie Universität Berlin
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// Copyright (c) 2016-2019, Knut Reinert & MPI für molekulare Genetik
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// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
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// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
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// -----------------------------------------------------------------------------------------------------
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#pragma once
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#include <
seqan3/core/algorithm/configuration.hpp
>
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#include <
seqan3/search/algorithm/configuration/detail.hpp
>
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#include <
seqan3/search/algorithm/configuration/max_error.hpp
>
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#include <
seqan3/search/algorithm/configuration/max_error_rate.hpp
>
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#include <
seqan3/search/algorithm/configuration/mode.hpp
>
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#include <
seqan3/search/algorithm/configuration/output.hpp
>
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max_error.hpp
Provides the configuration for maximum number of errors for all error types.
detail.hpp
Provides compatibility matrix for search configurations.
output.hpp
Provides the configuration for returning positions in the text.
max_error_rate.hpp
Provides the configuration for maximum number of errors in percent of the query length across all err...
mode.hpp
Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata"...
configuration.hpp
Provides seqan3::detail::configuration and utility functions.
seqan3
search
algorithm
configuration
all.hpp
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