SeqAn3
The Modern C++ library for sequence analysis.

alignment → core Relation

File in seqan3/alignmentIncludes file in seqan3/core
aligned_sequence / aligned_sequence_concept.hpptype_traits / all.hpp
aligned_sequence / aligned_sequence_concept.hppdebug_stream.hpp
aligned_sequence / aligned_sequence_concept.hppconcept / tuple.hpp
exception.hppplatform.hpp
band / static_band.hppalgorithm / bound.hpp
configuration / align_config_aligned_ends.hpptype_traits / basic.hpp
configuration / align_config_aligned_ends.hpptype_traits / template_inspection.hpp
configuration / align_config_aligned_ends.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_band.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_edit.hppalgorithm / configuration.hpp
configuration / align_config_gap.hpptype_traits / basic.hpp
configuration / align_config_gap.hpptype_traits / template_inspection.hpp
configuration / align_config_gap.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_max_error.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_mode.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_result.hppalgorithm / pipeable_config_element.hpp
configuration / align_config_scoring.hpptype_traits / basic.hpp
configuration / align_config_scoring.hppalgorithm / pipeable_config_element.hpp
configuration / detail.hppalgorithm / configuration_utility.hpp
pairwise / execution / alignment_executor_two_way.hppparallel / execution.hpp
pairwise / execution / alignment_executor_two_way.hpptype_traits / range.hpp
pairwise / execution / execution_handler_parallel.hppparallel / detail / reader_writer_manager.hpp
pairwise / execution / execution_handler_parallel.hppplatform.hpp
pairwise / execution / execution_handler_sequential.hppplatform.hpp
matrix / alignment_coordinate.hppdebug_stream.hpp
matrix / alignment_coordinate.hppdetail / strong_type.hpp
matrix / alignment_optimum.hppconcept / core_language.hpp
matrix / alignment_optimum.hpptype_traits / template_inspection.hpp
matrix / alignment_trace_algorithms.hpptype_traits / range.hpp
matrix / debug_matrix.hppdebug_stream.hpp
matrix / edit_distance_score_matrix_full.hppbit_manipulation.hpp
matrix / edit_distance_trace_matrix_full.hppbit_manipulation.hpp
matrix / row_wise_matrix.hppplatform.hpp
matrix / trace_directions.hppadd_enum_bitwise_operators.hpp
matrix / trace_directions.hppdebug_stream.hpp
pairwise / align_pairwise.hppalgorithm / all.hpp
pairwise / align_pairwise.hppparallel / execution.hpp
pairwise / align_pairwise.hpptype_traits / basic.hpp
pairwise / align_result_selector.hppalgorithm / configuration.hpp
pairwise / align_result_selector.hpptype_traits / basic.hpp
pairwise / align_result_selector.hpptype_traits / range.hpp
pairwise / align_result_selector.hpptype_traits / transformation_trait_or.hpp
pairwise / align_result_selector.hpptype_list.hpp
pairwise / alignment_algorithm.hppconcept / tuple.hpp
pairwise / alignment_algorithm.hppdebug_stream.hpp
pairwise / alignment_algorithm.hpptype_traits / deferred_crtp_base.hpp
pairwise / alignment_configurator.hppconcept / tuple.hpp
pairwise / alignment_configurator.hpptype_traits / deferred_crtp_base.hpp
pairwise / alignment_configurator.hpptype_traits / range.hpp
pairwise / alignment_configurator.hpptype_traits / template_inspection.hpp
pairwise / alignment_configurator.hpptype_list.hpp
pairwise / alignment_result.hpptype_traits / template_inspection.hpp
pairwise / edit_distance_fwd.hppbit_manipulation.hpp
pairwise / edit_distance_fwd.hppplatform.hpp
pairwise / edit_distance_fwd.hpptype_traits / deferred_crtp_base.hpp
pairwise / edit_distance_unbanded.hppalgorithm / configuration.hpp
pairwise / policy / affine_gap_banded_init_policy.hppalgorithm / configuration.hpp
pairwise / policy / affine_gap_banded_policy.hpptype_traits / basic.hpp
pairwise / policy / affine_gap_banded_policy.hpptype_traits / range.hpp
pairwise / policy / find_optimum_policy.hpptype_traits / deferred_crtp_base.hpp
pairwise / policy / unbanded_score_dp_matrix_policy.hpptype_traits / range.hpp
scoring / gap_scheme.hppconcept / cereal.hpp
scoring / gap_scheme.hppconcept / core_language.hpp
scoring / gap_scheme.hppdetail / strong_type.hpp
scoring / scoring_scheme_base.hppconcept / cereal.hpp
scoring / scoring_scheme_base.hppdetail / strong_type.hpp