vg
tools for working with variation graphs
Here is a list of all class members with links to the classes they belong to:
- ~ -
~Aligner() :
vg::Aligner
~AlignmentChainModelVertex() :
vg::AlignmentChainModelVertex
~AlignmentEmitter() :
vg::AlignmentEmitter
~AltTracebackStack() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
~AppendHaplotypeCommand() :
vg::AppendHaplotypeCommand
~BABuilder() :
vg::BandedGlobalAligner< IntType >::BABuilder
~BAMatrix() :
vg::BandedGlobalAligner< IntType >::BAMatrix
~BandedGlobalAligner() :
vg::BandedGlobalAligner< IntType >
~BaseOption() :
vg::BaseOption< Value, Parser >
~BlockedGzipInputStream() :
vg::io::BlockedGzipInputStream
~BlockedGzipOutputStream() :
vg::io::BlockedGzipOutputStream
~CachedPackedTraversalSupportFinder() :
vg::CachedPackedTraversalSupportFinder
~Colors() :
vg::Colors
~ConsistencyCalculator() :
vg::ConsistencyCalculator
~Deconstructor() :
vg::Deconstructor
~Deflection() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
~DeletableHandleGraph() :
handlegraph::DeletableHandleGraph
~DeleteHaplotypeCommand() :
vg::DeleteHaplotypeCommand
~DistanceHeuristic() :
vg::DistanceHeuristic
~DPScoreComparator() :
vg::MEMClusterer::DPScoreComparator
~ExhaustiveTraversalFinder() :
vg::ExhaustiveTraversalFinder
~ExpandingOverlayGraph() :
handlegraph::ExpandingOverlayGraph
~Filter() :
vg::Filter
~FixedGenotypePriorCalculator() :
vg::FixedGenotypePriorCalculator
~FragmentLengthDistribution() :
vg::FragmentLengthDistribution
~GenomeStateCommand() :
vg::GenomeStateCommand
~GenotypeLikelihoodCalculator() :
vg::GenotypeLikelihoodCalculator
~GenotypePriorCalculator() :
vg::GenotypePriorCalculator
~GFFReader() :
vg::GFFReader
~GFFRecord() :
vg::GFFRecord
~GraphCaller() :
vg::GraphCaller
~GSSWAligner() :
vg::GSSWAligner
~HandleGraph() :
handlegraph::HandleGraph
~Handler() :
vg::temp_file::Handler
~haplo_DP_column() :
haplo::haplo_DP_column
~Haplotype() :
vg::PhasedGenome::Haplotype
~HaplotypeNode() :
vg::PhasedGenome::HaplotypeNode
~HitEdge() :
vg::MEMClusterer::HitEdge
~HitNode() :
vg::MEMClusterer::HitNode
~HTSAlignmentEmitter() :
vg::HTSAlignmentEmitter
~IdentityOverlay() :
vg::IdentityOverlay
~Index() :
vg::Index
~InsertHaplotypeCommand() :
vg::InsertHaplotypeCommand
~iterator() :
handlegraph::PathForEachSocket::iterator
,
vg::PhasedGenome::iterator
~j2pb_error() :
j2pb_error
~json_autoptr() :
json_autoptr
~LegacyCaller() :
vg::LegacyCaller
~linear_haplo_structure() :
haplo::linear_haplo_structure
~Mapper() :
vg::Mapper
~MEMChainModelVertex() :
vg::MEMChainModelVertex
~MEMClusterer() :
vg::MEMClusterer
~MemoizingGraph() :
vg::MemoizingGraph
~MessageEmitter() :
vg::io::MessageEmitter
~MinDistanceClusterer() :
vg::MinDistanceClusterer
~MSAConverter() :
vg::MSAConverter
~MultipathAlignmentGraph() :
vg::MultipathAlignmentGraph
~MultipathMapper() :
vg::MultipathMapper
~MutableHandleGraph() :
handlegraph::MutableHandleGraph
~MutablePathDeletableHandleGraph() :
handlegraph::MutablePathDeletableHandleGraph
~MutablePathHandleGraph() :
handlegraph::MutablePathHandleGraph
~MutablePathMutableHandleGraph() :
handlegraph::MutablePathMutableHandleGraph
~NestedTraversalFinder() :
vg::NestedTraversalFinder
~NullMaskingGraph() :
vg::NullMaskingGraph
~Option() :
vg::Option< Value, Parser >
,
vg::Option< vector< Item >, Parser >
~OptionInterface() :
vg::OptionInterface
~OrientedDistanceMeasurer() :
vg::OrientedDistanceMeasurer
~PackedTraversalSupportFinder() :
vg::PackedTraversalSupportFinder
~Packer() :
vg::Packer
~PathBasedTraversalFinder() :
vg::PathBasedTraversalFinder
~PathChunker() :
vg::PathChunker
~PathForEachSocket() :
handlegraph::PathForEachSocket
~PathHandleGraph() :
handlegraph::PathHandleGraph
~PathOrientedDistanceMeasurer() :
vg::PathOrientedDistanceMeasurer
~PathPositionHandleGraph() :
handlegraph::PathPositionHandleGraph
~PathRestrictedTraversalFinder() :
vg::PathRestrictedTraversalFinder
~PathSubgraphOverlay() :
vg::PathSubgraphOverlay
~PhasedGenome() :
vg::PhasedGenome
~Pictographs() :
vg::Pictographs
~PoissonSupportSnarlCaller() :
vg::PoissonSupportSnarlCaller
~ProtobufEmitter() :
vg::io::ProtobufEmitter< T >
~ProtoHandleGraph() :
vg::ProtoHandleGraph
~QualAdjAligner() :
vg::QualAdjAligner
~RatioSupportSnarlCaller() :
vg::RatioSupportSnarlCaller
~ReadRestrictedTraversalFinder() :
vg::ReadRestrictedTraversalFinder
~RegionExpander() :
vg::RegionExpander
~ReplaceLocalHaplotypeCommand() :
vg::ReplaceLocalHaplotypeCommand
~ReplaceSnarlHaplotypeCommand() :
vg::ReplaceSnarlHaplotypeCommand
~RepresentativeTraversalFinder() :
vg::RepresentativeTraversalFinder
~ReverseGraph() :
vg::ReverseGraph
~ScoreProvider() :
haplo::ScoreProvider
~SerializableHandleGraph() :
handlegraph::SerializableHandleGraph
~SimpleConsistencyCalculator() :
vg::SimpleConsistencyCalculator
~SimpleTraversalSupportCalculator() :
vg::SimpleTraversalSupportCalculator
~SnarlCaller() :
vg::SnarlCaller
~SnarlFinder() :
vg::SnarlFinder
~SnarlManager() :
vg::SnarlManager
~SnarlMinDistance() :
vg::SnarlMinDistance
~SnarlOrientedDistanceMeasurer() :
vg::SnarlOrientedDistanceMeasurer
~SSWAligner() :
vg::SSWAligner
~StrandSplitGraph() :
vg::StrandSplitGraph
~StreamMultiplexer() :
vg::io::StreamMultiplexer
~SubgraphOverlay() :
vg::SubgraphOverlay
~SupportBasedSnarlCaller() :
vg::SupportBasedSnarlCaller
~SupportRestrictedTraversalFinder() :
vg::SupportRestrictedTraversalFinder
~SwapHaplotypesCommand() :
vg::SwapHaplotypesCommand
~TargetValueSearch() :
vg::TargetValueSearch
~TipAnchoredMaxDistance() :
vg::TipAnchoredMaxDistance
~TraversalFinder() :
vg::TraversalFinder
~TraversalSupportCalculator() :
vg::TraversalSupportCalculator
~TraversalSupportFinder() :
vg::TraversalSupportFinder
~Tree() :
vg::Tree< T >
~TreeNode() :
vg::TreeNode< T >
~TrivialTraversalFinder() :
vg::TrivialTraversalFinder
~TSVAlignmentEmitter() :
vg::TSVAlignmentEmitter
~TVSClusterer() :
vg::TVSClusterer
~VCFGenotyper() :
vg::VCFGenotyper
~VCFOutputCaller() :
vg::VCFOutputCaller
~VcfRecordConverter() :
vg::VcfRecordConverter
~VcfRecordFilter() :
vg::VcfRecordFilter
~VCFTraversalFinder() :
vg::VCFTraversalFinder
~VectorizableHandleGraph() :
handlegraph::VectorizableHandleGraph
~Vectorizer() :
Vectorizer
~VG() :
vg::VG
~VGAlignmentEmitter() :
vg::VGAlignmentEmitter
~Viz() :
vg::Viz
~Watchdog() :
vg::Watchdog
~XdropAligner() :
vg::XdropAligner
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