vg
tools for working with variation graphs
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#include <mutex>
#include <thread>
#include <vector>
#include <deque>
#include <htslib/hfile.h>
#include <htslib/hts.h>
#include <htslib/sam.h>
#include <vg/vg.pb.h>
#include <vg/io/protobuf_emitter.hpp>
#include <vg/io/stream_multiplexer.hpp>
Classes | |
class | vg::AlignmentEmitter |
class | vg::NullAlignmentEmitter |
class | vg::TSVAlignmentEmitter |
class | vg::HTSAlignmentEmitter |
class | vg::VGAlignmentEmitter |
Namespaces | |
vg | |
Functions | |
unique_ptr< AlignmentEmitter > | vg::get_alignment_emitter (const string &filename, const string &format, const map< string, int64_t > &path_length, size_t max_threads) |
Defines a system for emitting alignments and groups of alignments in multiple formats.