vg
tools for working with variation graphs
Macros | Functions
align_main.cpp File Reference
#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include "subcommand.hpp"
#include "../utility.hpp"
#include "../vg.hpp"
#include <vg/io/stream.hpp>

Macros

#define OPT_SCORE_MATRIX   1000
 

Functions

void help_align (char **argv)
 
int main_align (int argc, char **argv)
 

Detailed Description

Defines the "vg align" subcommand, which aligns a read against an entire graph.

Macro Definition Documentation

◆ OPT_SCORE_MATRIX

#define OPT_SCORE_MATRIX   1000

Function Documentation

◆ help_align()

void help_align ( char **  argv)

◆ main_align()

int main_align ( int  argc,
char **  argv 
)