vg
tools for working with variation graphs
Here is a list of all class members with links to the classes they belong to:
- u -
unaligned_bands :
vg::AlignmentChainModel
unary_boundaries :
vg::NetGraph
unchop() :
vg::VG
uncompressed_out :
vg::io::MessageEmitter
uncompressed_out_ostream :
vg::io::MessageEmitter
uncompressed_out_written :
vg::io::MessageEmitter
underflow() :
vg::io::fdinbuf
unescape_delim() :
vg::Packer
unescape_delims() :
vg::Packer
unfold() :
vg::PhaseUnfolder
,
vg::VG
unfold_component() :
vg::PhaseUnfolder
unfold_max_length :
vg::Genotyper
uniform_int_distribution() :
vg::uniform_int_distribution< T >
uniform_real_distribution() :
vg::uniform_real_distribution< T >
unindex_edge_by_node_sides() :
vg::VG
uniqueness :
vg::Alignment
unlock() :
vg::GraphSynchronizer::Lock
unmapped_filter() :
vg::Filter
unpack_bit() :
handlegraph::number_bool_packing
unpack_number() :
handlegraph::number_bool_packing
unpaired_penalty :
vg::BaseMapper
unparse() :
vg::OptionValueParser< Value >
,
vg::OptionValueParser< vector< Item > >
unrecord() :
vg::SnarlManager
unreverse_graph() :
vg::GSSWAligner
unreverse_graph_mapping() :
vg::GSSWAligner
unstranded :
vg::OrientedDistanceClusterer
untranslate() :
vg::GFAToPinchTranslator
update_in_out_edges() :
vg::FlowSort
update_inner_values() :
haplo::haplo_DP_column
update_mapping_positions() :
vg::PathIndex
update_path_indexes() :
vg::GraphSynchronizer
update_progress() :
vg::Progressive
update_score_vector() :
haplo::haplo_DP_column
update_state() :
vg::BandedGlobalAligner< IntType >::BABuilder
update_vcf_header() :
vg::PoissonSupportSnarlCaller
,
vg::RatioSupportSnarlCaller
,
vg::SnarlCaller
update_vcf_info() :
vg::PoissonSupportSnarlCaller
,
vg::RatioSupportSnarlCaller
,
vg::SnarlCaller
,
vg::SupportBasedSnarlCaller
upper_bound :
vg::BREAKPOINT
upper_bound_heuristic :
vg::TargetValueSearch
use_approx_sub_mem_count :
vg::BaseMapper
use_avg :
vg::Filter
use_cluster_mq :
vg::Mapper
use_embedded_paths :
vg::Transcriptome
use_internal_connectivity :
vg::NetGraph
use_mapq :
vg::Genotyper
use_min_dist_clusterer :
vg::MultipathMapper
use_population_mapqs :
vg::MultipathMapper
use_reference_paths :
vg::Transcriptome
use_tvs_clusterer :
vg::MultipathMapper
used :
vg::PinchToVGTranslator
used_bins_of_range() :
vg::StreamIndexBase
Generated by
1.8.16