vg
tools for working with variation graphs
vg::MinimumDistanceIndex::SnarlIndex Member List

This is the complete list of members for vg::MinimumDistanceIndex::SnarlIndex, including all inherited members.

depthvg::MinimumDistanceIndex::SnarlIndexprotected
distancesvg::MinimumDistanceIndex::SnarlIndexprotected
distToEnds(size_t rank, int64_t distL, int64_t distR) constvg::MinimumDistanceIndex::SnarlIndex
id_in_parentvg::MinimumDistanceIndex::SnarlIndexprotected
in_chainvg::MinimumDistanceIndex::SnarlIndexprotected
index(size_t start, size_t end) constvg::MinimumDistanceIndex::SnarlIndexprotected
insertDistance(size_t start, size_t end, int64_t dist)vg::MinimumDistanceIndex::SnarlIndex
is_unary_snarlvg::MinimumDistanceIndex::SnarlIndexprotected
load(istream &in)vg::MinimumDistanceIndex::SnarlIndex
MinimumDistanceIndex classvg::MinimumDistanceIndex::SnarlIndexfriend
nodeLength(size_t i) constvg::MinimumDistanceIndex::SnarlIndexinline
num_nodesvg::MinimumDistanceIndex::SnarlIndexprotected
parent_idvg::MinimumDistanceIndex::SnarlIndexprotected
printSelf()vg::MinimumDistanceIndex::SnarlIndex
rev_in_parentvg::MinimumDistanceIndex::SnarlIndexprotected
serialize(ostream &out) constvg::MinimumDistanceIndex::SnarlIndex
snarlDistance(size_t start, size_t end) constvg::MinimumDistanceIndex::SnarlIndexinline
SnarlIndex(id_t parent_id, bool rev_in_parent, id_t id_in_parent, bool is_unary_snarl, size_t depth, size_t num_nodes, bool in_chain)vg::MinimumDistanceIndex::SnarlIndex
SnarlIndex()vg::MinimumDistanceIndex::SnarlIndex
snarlLength() constvg::MinimumDistanceIndex::SnarlIndex
SnarlSeedClusterer classvg::MinimumDistanceIndex::SnarlIndexfriend
TestMinDistanceIndex classvg::MinimumDistanceIndex::SnarlIndexfriend