vg
tools for working with variation graphs
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This is the complete list of members for vg::AlignerClient, including all inherited members.
adjust_alignments_for_base_quality | vg::AlignerClient | |
AlignerClient(double gc_content_estimate=vg::default_gc_content) | vg::AlignerClient | protected |
gc_content_estimate | vg::AlignerClient | private |
get_aligner(bool have_qualities=true) const | vg::AlignerClient | protected |
get_qual_adj_aligner() const | vg::AlignerClient | protected |
get_regular_aligner() const | vg::AlignerClient | protected |
load_scoring_matrix(std::ifstream &matrix_stream) | vg::AlignerClient | |
qual_adj_aligner | vg::AlignerClient | private |
regular_aligner | vg::AlignerClient | private |
set_alignment_scores(int8_t match, int8_t mismatch, int8_t gap_open, int8_t gap_extend, int8_t full_length_bonus, uint32_t xdrop_max_gap_length=default_xdrop_max_gap_length) | vg::AlignerClient |