vg
tools for working with variation graphs
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#include <omp.h>
#include <unistd.h>
#include <getopt.h>
#include <list>
#include <fstream>
#include "subcommand.hpp"
#include "../vg.hpp"
#include "../xg.hpp"
#include "../aligner.hpp"
#include "../sampler.hpp"
#include <vg/io/protobuf_emitter.hpp>
#include <vg/io/vpkg.hpp>
#include <bdsg/overlay_helper.hpp>
Functions | |
vector< pair< string, double > > | parse_rsem_expression_file (istream &rsem_in) |
void | help_sim (char **argv) |
int | main_sim (int argc, char **argv) |
Defines the "vg sim" subcommand, which generates potential reads from a graph.
void help_sim | ( | char ** | argv | ) |
int main_sim | ( | int | argc, |
char ** | argv | ||
) |
vector<pair<string, double> > parse_rsem_expression_file | ( | istream & | rsem_in | ) |