vg
tools for working with variation graphs
- _ -
_add_edit :
dozeu_interface.cpp
_append_op :
dozeu_interface.cpp
_CONVERT :
json2pb.cpp
_CONVERT_AS_STRING :
json2pb.cpp
_CONVERT_WITH_STRING :
json2pb.cpp
_flush_op :
dozeu_interface.cpp
_POSIX_C_SOURCE :
main.cpp
,
crash.cpp
_push_mapping :
dozeu_interface.cpp
_push_op :
dozeu_interface.cpp
_SET_OR_ADD :
json2pb.cpp
_XOPEN_SOURCE :
crash.cpp
- b -
BACKWARD_HAS_DW :
crash.cpp
- c -
CATCH_CONFIG_RUNNER :
driver.cpp
- d -
DZ_CIGAR_OP :
dozeu_interface.cpp
,
qual_adj_xdrop_aligner.cpp
,
xdrop_aligner.cpp
DZ_FULL_LENGTH_BONUS :
qual_adj_xdrop_aligner.cpp
,
dozeu_interface.cpp
,
xdrop_aligner.cpp
DZ_QUAL_ADJ :
qual_adj_xdrop_aligner.cpp
- j -
json_boolean :
json2pb.cpp
- o -
OPT_ALT_PATHS :
mpmap_main.cpp
OPT_ALWAYS_CHECK_POPULATION :
mpmap_main.cpp
OPT_APPROX_EXP :
mpmap_main.cpp
OPT_BAND_PADDING_MULTIPLIER :
mpmap_main.cpp
OPT_BUILD_VGI_INDEX :
index_main.cpp
OPT_CLUSTER_STDEV :
giraffe_main.cpp
OPT_COMPONENT_MIN_DIST :
mpmap_main.cpp
OPT_EXCLUDE_UNALIGNED :
map_main.cpp
OPT_FAN_OUT_DIFF :
mpmap_main.cpp
OPT_FAN_OUT_QUAL :
mpmap_main.cpp
OPT_FORCE_HAPLOTYPE_COUNT :
mpmap_main.cpp
OPT_FRAGMENT_MEAN :
giraffe_main.cpp
OPT_FRAGMENT_STDEV :
giraffe_main.cpp
OPT_GREEDY_MEM_RESTART_MAX_LCP :
mpmap_main.cpp
OPT_GREEDY_MIN_DIST :
mpmap_main.cpp
OPT_HARD_HIT_MAX_MULTIPLIER :
mpmap_main.cpp
OPT_MAX_FANS_OUT :
mpmap_main.cpp
OPT_MAX_PATHS :
mpmap_main.cpp
OPT_MAX_RESCUE_ATTEMPTS :
mpmap_main.cpp
OPT_MAX_RESCUE_P_VALUE :
mpmap_main.cpp
OPT_MIN_DIST_CLUSTER :
mpmap_main.cpp
OPT_NO_CLUSTER :
mpmap_main.cpp
OPT_NO_GREEDY_MEM_RESTARTS :
mpmap_main.cpp
OPT_NO_OUTPUT :
mpmap_main.cpp
OPT_NOT_SPLICED :
mpmap_main.cpp
OPT_OUTPUT_BASENAME :
giraffe_main.cpp
OPT_PATH_RESCUE_GRAPH :
mpmap_main.cpp
OPT_PATHS_AS_SAMPLES :
index_main.cpp
OPT_PRUNE_EXP :
mpmap_main.cpp
OPT_RECOMBINATION_PENALTY :
mpmap_main.cpp
,
map_main.cpp
OPT_RENAME_VARIANTS :
index_main.cpp
OPT_REPORT_NAME :
giraffe_main.cpp
OPT_RESCUE_STDEV :
giraffe_main.cpp
OPT_SCORE_MATRIX :
map_main.cpp
,
align_main.cpp
OPT_SECONDARY_MAX_DIFF :
mpmap_main.cpp
OPT_SECONDARY_RESCUE_ATTEMPTS :
mpmap_main.cpp
OPT_SHORT_MEM_FILTER_FACTOR :
mpmap_main.cpp
OPT_STRIP_COUNT :
mpmap_main.cpp
OPT_STRIP_LENGTH :
mpmap_main.cpp
OPT_STRIPPED_MATCH :
mpmap_main.cpp
OPT_SUPPRESS_SUPPRESSION :
mpmap_main.cpp
OPT_SUPPRESS_TAIL_ANCHORS :
mpmap_main.cpp
OPT_TOP_TRACEBACKS :
mpmap_main.cpp
OPT_TRACK_CORRECTNESS :
giraffe_main.cpp
OPT_TRACK_PROVENANCE :
giraffe_main.cpp
OVERLOAD_PAIR_HASH :
hash_map.hpp
- q -
QUOTE :
version.cpp
- s -
S :
index.cpp
STR :
version.cpp
- v -
VG_GIT_VERSION :
version.cpp
VG_PREFLIGHT_EVERYWHERE :
preflight.hpp
VG_STANDARD_LIBRARY_VERSION :
version.cpp
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