depth | vg::MinimumDistanceIndex::SnarlIndex | protected |
dist_to_ends(size_t rank, int64_t distL, int64_t distR) const | vg::MinimumDistanceIndex::SnarlIndex | |
distances | vg::MinimumDistanceIndex::SnarlIndex | protected |
end_id | vg::MinimumDistanceIndex::SnarlIndex | protected |
id_in_parent | vg::MinimumDistanceIndex::SnarlIndex | protected |
in_chain | vg::MinimumDistanceIndex::SnarlIndex | protected |
index(size_t start, size_t end) const | vg::MinimumDistanceIndex::SnarlIndex | protected |
insert_distance(size_t start, size_t end, int64_t dist) | vg::MinimumDistanceIndex::SnarlIndex | |
is_simple_snarl | vg::MinimumDistanceIndex::SnarlIndex | protected |
is_trivial_snarl() const | vg::MinimumDistanceIndex::SnarlIndex | |
is_unary_snarl | vg::MinimumDistanceIndex::SnarlIndex | protected |
load(istream &in, bool include_component) | vg::MinimumDistanceIndex::SnarlIndex | |
max_width | vg::MinimumDistanceIndex::SnarlIndex | protected |
MinimumDistanceIndex class | vg::MinimumDistanceIndex::SnarlIndex | friend |
node_length(size_t i) const | vg::MinimumDistanceIndex::SnarlIndex | inline |
num_nodes | vg::MinimumDistanceIndex::SnarlIndex | protected |
parent_id | vg::MinimumDistanceIndex::SnarlIndex | protected |
print_self() const | vg::MinimumDistanceIndex::SnarlIndex | |
rev_in_parent | vg::MinimumDistanceIndex::SnarlIndex | protected |
serialize(ostream &out) const | vg::MinimumDistanceIndex::SnarlIndex | |
snarl_distance(size_t start, size_t end) const | vg::MinimumDistanceIndex::SnarlIndex | inline |
snarl_length() const | vg::MinimumDistanceIndex::SnarlIndex | |
snarl_to_json() | vg::MinimumDistanceIndex::SnarlIndex | |
SnarlIndex(id_t parent_id, bool rev_in_parent, id_t id_in_parent, id_t end_id, bool is_unary_snarl, size_t depth, size_t num_nodes, bool in_chain) | vg::MinimumDistanceIndex::SnarlIndex | |
SnarlIndex() | vg::MinimumDistanceIndex::SnarlIndex | |
SnarlSeedClusterer class | vg::MinimumDistanceIndex::SnarlIndex | friend |