vg
tools for working with variation graphs
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This is the complete list of members for vg::Homogenizer, including all inherited members.
cut_nonref_tips(vg::VG *graph) | vg::Homogenizer | private |
cut_tips(vg::VG *graph) | vg::Homogenizer | private |
cut_tips(vector< id_t > tip_ids, vg::VG *graph) | vg::Homogenizer | private |
find_non_ref_tips(vg::VG *graph) | vg::Homogenizer | private |
find_tips(vg::VG *graph) | vg::Homogenizer | private |
homogenize(vg::VG *graph, PathPositionHandleGraph *path_graph, gcsa::GCSA *gcsa_index, gcsa::LCPArray *lcp_index, Paths p, int kmer_size) | vg::Homogenizer | |
homogenize(vg::VG *graph, PathPositionHandleGraph *path_graph, gcsa::GCSA *gcsa_index, gcsa::LCPArray *lcp_index, vg::Index reads_index) | vg::Homogenizer | |
remap(vector< Alignment > reads, vg::VG graph) | vg::Homogenizer | private |
translator | vg::Homogenizer | private |