vg
tools for working with variation graphs
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#include <unordered_set>
#include "mapper.hpp"
#include "haplotypes.hpp"
#include "annotation.hpp"
#include "algorithms/dagify.hpp"
#include "algorithms/is_acyclic.hpp"
#include "algorithms/split_strands.hpp"
Namespaces | |
vg | |
Functions | |
int | vg::sub_overlaps_of_first_aln (const vector< Alignment > &alns, float overlap_fraction) |
set< pos_t > | vg::gcsa_nodes_to_positions (const vector< gcsa::node_type > &nodes) |
const int | vg::balanced_stride (int read_length, int kmer_size, int stride) |
const vector< string > | vg::balanced_kmers (const string &seq, const int kmer_size, const int stride) |