Here is a list of all class members with links to the classes they belong to:
- b -
- b()
: vg::uniform_int_distribution< T >
, vg::uniform_real_distribution< T >
- BABuilder()
: vg::BandedGlobalAligner< IntType >::BABuilder
, vg::BandedGlobalAligner< IntType >::BAMatrix
- back()
: haplo::gbwt_thread_t
- backbone
: vg::FlowSort::Growth
- backed_up
: vg::io::BlockedGzipOutputStream
- background_sampler
: vg::NGSSimulator
- backing
: vg::ExtraNodeGraph
, vg::SourceSinkOverlay
- backing_files
: vg::HTSAlignmentEmitter
- backing_graph
: vg::GenomeState
, vg::SubgraphOverlay
- backing_heads
: vg::SourceSinkOverlay
- backing_path_graph
: vg::PathSubgraphOverlay
- backing_stream
: vg::io::StreamMultiplexer
- backing_tails
: vg::SourceSinkOverlay
- backtracking_unroll()
: vg::VG
- BackUp()
: vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream
- backward
: vg::KmerMatch
, vg::NodeTraversal
, vg::Visit
- BAMatrix()
: vg::BandedGlobalAligner< IntType >::BAMatrix
- band_begin
: vg::AlignmentChainModelVertex
- band_idx
: vg::AlignmentChainModelVertex
- band_multimaps
: vg::Mapper
- band_padding_memo
: vg::MultipathMapper
- band_padding_memo_size
: vg::MultipathMapper
- band_padding_multiplier
: vg::MultipathMapper
- banded_matrices
: vg::BandedGlobalAligner< IntType >
- BandedGlobalAligner
: vg::BandedGlobalAligner< IntType >::BAMatrix
, vg::BandedGlobalAligner< IntType >
- base
: vg::io::hFILE_cppstream
, vg::WideningPRNG< PRNG, OutType >
- base_edge()
: vg::AugmentedGraph
- base_entry_to_string()
: vg::Index
- base_graph
: vg::AugmentedGraph
- base_locks
: vg::Packer
- base_pileup
: vg::NodePileup
- baseline_error_large
: vg::PoissonSupportSnarlCaller
- baseline_error_small
: vg::PoissonSupportSnarlCaller
- BaseMapper()
: vg::BaseMapper
- basename
: vg::IndexManager
- BaseOption()
: vg::BaseOption< Value, Parser >
- bases
: vg::BasePileup
- bases_per_chunk
: vg::Constructor
- batch_edge()
: vg::Index
- batch_file_prefix
: vg::HaplotypeIndexer
- batch_kmer()
: vg::Index
- batch_node()
: vg::Index
- begin()
: handlegraph::PathForEachSocket
, vg::algorithms::kmer_t
, vg::algorithms::walk_t
, vg::kmer_t
, vg::MaximalExactMatch
, vg::Option< vector< Item >, Parser >
, vg::PathIndex
, vg::PathNode
, vg::PhasedGenome
, vg::ShuffledPairs
, vg::walk_t
- bfs()
: vg::FlowSort
- bfs_left()
: vg::RepresentativeTraversalFinder
- bfs_right()
: vg::RepresentativeTraversalFinder
- BGZF_FOOTER_LENGTH
: vg::HTSAlignmentEmitter
- bgzip_in
: vg::io::MessageIterator
- bgzip_out
: vg::io::MessageEmitter
- bin_for_position()
: vg::Packer
- bin_size
: vg::Packer
- bin_t
: vg::StreamIndexBase
- bin_to_prefix()
: vg::StreamIndexBase
- bin_to_ranges
: vg::StreamIndexBase
- binary_extend_intervals()
: haplo::haplo_DP_column
- bins_by_id_prefix
: vg::StreamIndexBase
- bit_length
: vg::BitString
- bits
: vg::BitString
- BitString()
: vg::BitString
- block_length
: gafkluge::GafRecord
- BlockedGzipInputStream()
: vg::io::BlockedGzipInputStream
- BlockedGzipOutputStream()
: vg::io::BlockedGzipOutputStream
- bluntify()
: vg::VG
- Bool
: vg::multipath_alignment_t
- border
: vg::PhaseUnfolder
- border_offsets
: vg::Exon
- border_steps
: vg::Exon
- bottom
: haplo::int_itvl_t
- bottom_diag
: vg::BandedGlobalAligner< IntType >::BAMatrix
- bp_length()
: vg::NestedTraversalFinder
, vg::RepresentativeTraversalFinder
- break_chain()
: vg::GraphCaller
- break_cycles()
: vg::VG
- breakend_filter()
: vg::Filter
- brute_force_alt_traversals()
: vg::VCFTraversalFinder
- buf
: vg::io::fdistream
, vg::io::fdostream
- buffer
: vg::io::BlockedGzipOutputStream
, vg::io::fdinbuf
, vg::VcfBuffer
- buffer_size
: vg::ReadFilter
- bufSize
: vg::io::fdinbuf
- build_edge_indexes()
: vg::VG
- build_edge_indexes_no_init_size()
: vg::VG
- build_gbwt()
: vg::HaplotypeIndexer
- BUILD_HOST
: vg::Version
- build_indexes()
: vg::SnarlManager
, vg::VG
- build_indexes_no_init_size()
: vg::VG
- build_indices()
: vg::PhasedGenome
- build_node_indexes()
: vg::VG
- build_node_indexes_no_init_size()
: vg::VG
- build_position_table()
: vg::Translator
- build_site_indices_internal()
: vg::PhasedGenome
- BUILD_USER
: vg::Version
- bulk_load
: vg::Index
- by_id
: vg::PathIndex
- by_start
: vg::PathIndex
- byte_count
: vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream
- ByteCount()
: vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream