Here is a list of all class members with links to the classes they belong to:
- u -
- uf_handle()
: vg::IntegratedSnarlFinder::MergedAdjacencyGraph
- uf_rank()
: vg::IntegratedSnarlFinder::MergedAdjacencyGraph
- unaligned_bands
: vg::AlignmentChainModel
- unaltered_data
: vg::SpliceMotifs
- unary_boundaries
: vg::NetGraph
- uncompressed_out
: vg::io::MessageEmitter
- uncompressed_out_ostream
: vg::io::MessageEmitter
- uncompressed_out_written
: vg::io::MessageEmitter
- underflow()
: vg::io::fdinbuf
- underlying_interval()
: vg::IncrementalSubgraph
, vg::JoinedSpliceGraph
- unescape_delim()
: vg::Packer
- unescape_delims()
: vg::Packer
- unfold()
: vg::PhaseUnfolder
, vg::VG
- unfold_component()
: vg::PhaseUnfolder
- unfold_haplotypes()
: vg::GaplessExtender
- unfold_max_length
: vg::Genotyper
- uniform_int_distribution()
: vg::uniform_int_distribution< T >
- uniform_real_distribution()
: vg::uniform_real_distribution< T >
- unindex_edge_by_node_sides()
: vg::VG
- union_find
: vg::IntegratedSnarlFinder::MergedAdjacencyGraph
- uniqueness
: vg::Alignment
- universe_size
: vg::SmallBitset
- unlock()
: vg::GraphSynchronizer::Lock
- unmapped_filter()
: vg::Filter
- unoriented_motif()
: vg::SpliceMotifs
- unpack_bit()
: handlegraph::number_bool_packing
- unpack_number()
: handlegraph::number_bool_packing
- unpack_on_rev()
: bdsg::ODGI::edge_helper
- unpack_other_rev()
: bdsg::ODGI::edge_helper
- unpack_to_curr()
: bdsg::ODGI::edge_helper
- unpaired_penalty
: vg::BaseMapper
- unparse()
: vg::OptionValueParser< Value >
, vg::OptionValueParser< vector< Item > >
- unrecord()
: vg::SnarlManager
- unreverse_graph()
: vg::GSSWAligner
- unreverse_graph_mapping()
: vg::GSSWAligner
- unstranded
: vg::OrientedDistanceClusterer
- unused_cluster_multiplicity_mq_limit
: vg::MultipathMapper
- update_haplotype_index()
: vg::Transcriptome
- update_in_out_edges()
: vg::FlowSort
- update_inner_values()
: haplo::haplo_DP_column
- update_mapping_positions()
: vg::PathIndex
- update_path_indexes()
: vg::GraphSynchronizer
- update_progress()
: vg::Progressive
- update_score_vector()
: haplo::haplo_DP_column
- update_scoring()
: vg::SpliceMotifs
- update_state()
: vg::BandedGlobalAligner< IntType >::BABuilder
, vg::DinucleotideMachine
- update_vcf_header()
: vg::PoissonSupportSnarlCaller
, vg::RatioSupportSnarlCaller
, vg::SnarlCaller
- update_vcf_info()
: vg::MCMCCaller
, vg::PoissonSupportSnarlCaller
, vg::RatioSupportSnarlCaller
, vg::SnarlCaller
, vg::SupportBasedSnarlCaller
- upper_bound
: vg::BREAKPOINT
- upper_bound_heuristic
: vg::TargetValueSearch
- use_all_paths
: vg::Transcriptome
- use_approx_sub_mem_count
: vg::BaseMapper
- use_avg
: vg::Filter
- use_cluster_mq
: vg::Mapper
- use_fanout_match_alg
: vg::MultipathMapper
- use_greedy_mem_restarts
: vg::BaseMapper
- use_internal_connectivity
: vg::NetGraph
- use_mapq
: vg::Genotyper
, vg::PoissonSupportSnarlCaller
- use_min_dist_clusterer
: vg::MultipathMapper
- use_pessimistic_tail_alignment
: vg::MultipathMapper
- use_population_mapqs
: vg::MultipathMapper
- use_reference_paths
: vg::Transcriptome
- use_stripped_match_alg
: vg::MultipathMapper
- use_tvs_clusterer
: vg::MultipathMapper
- used_bins_of_range()
: vg::StreamIndexBase