vg
tools for working with variation graphs
Namespaces | Functions
mapper.cpp File Reference
#include <unordered_set>
#include "mapper.hpp"
#include "haplotypes.hpp"
#include "annotation.hpp"
#include "algorithms/dagify.hpp"
#include "algorithms/is_acyclic.hpp"
#include "algorithms/split_strands.hpp"

Namespaces

 vg
 

Functions

int vg::sub_overlaps_of_first_aln (const vector< Alignment > &alns, float overlap_fraction)
 
set< pos_tvg::gcsa_nodes_to_positions (const vector< gcsa::node_type > &nodes)
 
const int vg::balanced_stride (int read_length, int kmer_size, int stride)
 
const vector< string > vg::balanced_kmers (const string &seq, const int kmer_size, const int stride)