vg
tools for working with variation graphs
- b -
backbone :
vg::FlowSort::Growth
backed_up :
vg::io::BlockedGzipOutputStream
background_sampler :
vg::NGSSimulator
backing :
vg::ExtraNodeGraph
,
vg::SourceSinkOverlay
backing_files :
vg::HTSAlignmentEmitter
backing_graph :
vg::GenomeState
,
vg::SubgraphOverlay
backing_heads :
vg::SourceSinkOverlay
backing_path_graph :
vg::PathSubgraphOverlay
backing_stream :
vg::io::StreamMultiplexer
backing_tails :
vg::SourceSinkOverlay
backward :
vg::KmerMatch
,
vg::NodeTraversal
,
vg::Visit
band_begin :
vg::AlignmentChainModelVertex
band_idx :
vg::AlignmentChainModelVertex
band_multimaps :
vg::Mapper
band_padding_memo :
vg::MultipathMapper
band_padding_memo_size :
vg::MultipathMapper
band_padding_multiplier :
vg::MultipathMapper
banded_matrices :
vg::BandedGlobalAligner< IntType >
base :
vg::io::hFILE_cppstream
,
vg::WideningPRNG< PRNG, OutType >
base_graph :
vg::AugmentedGraph
base_locks :
vg::Packer
base_pileup :
vg::NodePileup
baseline_error_large :
vg::PoissonSupportSnarlCaller
baseline_error_small :
vg::PoissonSupportSnarlCaller
basename :
vg::IndexManager
bases :
vg::BasePileup
bases_per_chunk :
vg::Constructor
batch_file_prefix :
vg::HaplotypeIndexer
begin :
vg::algorithms::kmer_t
,
vg::algorithms::walk_t
,
vg::kmer_t
,
vg::MaximalExactMatch
,
vg::PathNode
,
vg::walk_t
BGZF_FOOTER_LENGTH :
vg::HTSAlignmentEmitter
bgzip_in :
vg::io::MessageIterator
bgzip_out :
vg::io::MessageEmitter
bin_size :
vg::Packer
bin_to_ranges :
vg::StreamIndexBase
bins_by_id_prefix :
vg::StreamIndexBase
bit_length :
vg::BitString
bits :
vg::BitString
block_length :
gafkluge::GafRecord
border :
vg::PhaseUnfolder
border_offsets :
vg::Exon
border_steps :
vg::Exon
bottom :
haplo::int_itvl_t
bottom_diag :
vg::BandedGlobalAligner< IntType >::BAMatrix
buf :
vg::io::fdistream
,
vg::io::fdostream
buffer :
vg::io::BlockedGzipOutputStream
,
vg::io::fdinbuf
,
vg::VcfBuffer
buffer_size :
vg::ReadFilter
bufSize :
vg::io::fdinbuf
BUILD_HOST :
vg::Version
BUILD_USER :
vg::Version
bulk_load :
vg::Index
by_id :
vg::PathIndex
by_start :
vg::PathIndex
byte_count :
vg::io::BlockedGzipInputStream
,
vg::io::BlockedGzipOutputStream
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