vg
tools for working with variation graphs
Classes | Namespaces | Functions
prune.hpp File Reference
#include <vg/vg.pb.h>
#include "handle.hpp"
#include "hash_map.hpp"
#include "position.hpp"

Classes

struct  vg::walk_t
 Record a <=k-length walk in the context of a graph. More...
 

Namespaces

 vg
 

Functions

pair_hash_set< edge_t > vg::find_edges_to_prune (const HandleGraph &graph, size_t k, size_t edge_max)
 Iterate over all the walks up to length k, adding edges which. More...
 

Detailed Description

Functions for working with kmers_t's in HandleGraphs.