vg
tools for working with variation graphs
|
This is the complete list of members for vg::SnarlSeedClusterer, including all inherited members.
CHAIN enum value | vg::SnarlSeedClusterer | private |
ChildNodeType enum name | vg::SnarlSeedClusterer | private |
cluster_chain_level(TreeState &tree_state, size_t depth) const | vg::SnarlSeedClusterer | private |
cluster_one_chain(TreeState &tree_state, size_t chain_i, size_t depth) const | vg::SnarlSeedClusterer | private |
cluster_one_node(TreeState &tree_state, id_t node_id, int64_t node_length) const | vg::SnarlSeedClusterer | private |
cluster_one_snarl(TreeState &tree_state, size_t snarl_index_i) const | vg::SnarlSeedClusterer | private |
cluster_only_top_level_chain_seeds(TreeState &tree_state, vector< pair< size_t, size_t >> &seed_clusters) const | vg::SnarlSeedClusterer | private |
cluster_seeds(const vector< Seed > &seeds, int64_t read_distance_limit) const | vg::SnarlSeedClusterer | |
cluster_seeds(const vector< vector< Seed >> &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) const | vg::SnarlSeedClusterer | |
cluster_seeds_internal(const vector< const vector< Seed > * > &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) const | vg::SnarlSeedClusterer | private |
cluster_simple_snarl(TreeState &tree_state, vector< tuple< id_t, bool, int64_t, int64_t, int64_t >> nodes, int64_t loop_left, int64_t loop_right, int64_t snarl_length) const | vg::SnarlSeedClusterer | private |
cluster_snarl_level(TreeState &tree_state, size_t depth) const | vg::SnarlSeedClusterer | private |
dist_index | vg::SnarlSeedClusterer | private |
get_nodes(TreeState &tree_state, vector< hash_map< size_t, vector< pair< NetgraphNode, NodeClusters >>>> &snarl_to_nodes_by_level) const | vg::SnarlSeedClusterer | private |
NODE enum value | vg::SnarlSeedClusterer | private |
SNARL enum value | vg::SnarlSeedClusterer | private |
SnarlSeedClusterer(MinimumDistanceIndex &dist_index) | vg::SnarlSeedClusterer | |
typeToString(ChildNodeType t) | vg::SnarlSeedClusterer | inlineprivatestatic |