|
const vector< const vector< Seed > * > * | all_seeds |
|
vector< size_t > | read_index_offsets |
|
int64_t | read_distance_limit |
|
int64_t | fragment_distance_limit |
|
vector< structures::UnionFind > | read_union_find |
|
structures::UnionFind | fragment_union_find |
|
vector< vector< pair< int64_t, int64_t > > > | read_cluster_dists |
|
vector< vector< pair< id_t, size_t > > > | node_to_seeds |
|
hash_map< size_t, vector< pair< NetgraphNode, NodeClusters > > > | snarl_to_nodes |
|
hash_map< size_t, hash_map< size_t, pair< size_t, NodeClusters > > > | chain_to_snarls |
|
hash_map< size_t, vector< pair< NetgraphNode, NodeClusters > > > | parent_snarl_to_nodes |
|
hash_map< size_t, size_t > | component_to_index |
|
vector< vector< pair< size_t, size_t > > > | top_level_seed_clusters |
|
vector< hash_map< size_t, vector< tuple< id_t, bool, int64_t, int64_t, int64_t > > > > | simple_snarl_to_nodes_by_component |
|
◆ TreeState()
vg::SnarlSeedClusterer::TreeState::TreeState |
( |
const vector< const vector< Seed > * > * |
all_seeds, |
|
|
int64_t |
read_distance_limit, |
|
|
int64_t |
fragment_distance_limit, |
|
|
size_t |
seed_count |
|
) |
| |
|
inline |
◆ all_seeds
const vector<const vector<Seed>*>* vg::SnarlSeedClusterer::TreeState::all_seeds |
◆ chain_to_snarls
◆ component_to_index
hash_map<size_t, size_t> vg::SnarlSeedClusterer::TreeState::component_to_index |
◆ fragment_distance_limit
int64_t vg::SnarlSeedClusterer::TreeState::fragment_distance_limit |
◆ fragment_union_find
structures::UnionFind vg::SnarlSeedClusterer::TreeState::fragment_union_find |
◆ node_to_seeds
vector<vector<pair<id_t, size_t> > > vg::SnarlSeedClusterer::TreeState::node_to_seeds |
◆ parent_snarl_to_nodes
◆ read_cluster_dists
vector<vector<pair<int64_t, int64_t> > > vg::SnarlSeedClusterer::TreeState::read_cluster_dists |
◆ read_distance_limit
int64_t vg::SnarlSeedClusterer::TreeState::read_distance_limit |
◆ read_index_offsets
vector<size_t> vg::SnarlSeedClusterer::TreeState::read_index_offsets |
◆ read_union_find
vector<structures::UnionFind> vg::SnarlSeedClusterer::TreeState::read_union_find |
◆ simple_snarl_to_nodes_by_component
vector<hash_map<size_t, vector<tuple<id_t, bool, int64_t, int64_t, int64_t> > > > vg::SnarlSeedClusterer::TreeState::simple_snarl_to_nodes_by_component |
◆ snarl_to_nodes
◆ top_level_seed_clusters
vector<vector<pair<size_t, size_t> > > vg::SnarlSeedClusterer::TreeState::top_level_seed_clusters |
The documentation for this struct was generated from the following file: