vg
tools for working with variation graphs
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This is the complete list of members for vg::Deconstructor, including all inherited members.
check_max_nodes(const Snarl *snarl) | vg::Deconstructor | private |
choose_traversals(const vector< int > &travs, const vector< int > &trav_to_allele, const vector< string > &trav_to_name) | vg::Deconstructor | private |
deconstruct(vector< string > refpaths, const PathPositionHandleGraph *grpah, SnarlManager *snarl_manager, bool path_restricted_traversals, int ploidy, const unordered_map< string, string > *path_to_sample=nullptr) | vg::Deconstructor | |
deconstruct_site(const Snarl *site) | vg::Deconstructor | private |
Deconstructor() | vg::Deconstructor | |
explicit_exhaustive_traversals(const Snarl *snarl) | vg::Deconstructor | private |
get_alleles(vcflib::Variant &v, const vector< SnarlTraversal > &travs, int ref_path_idx, char prev_char, bool use_start) | vg::Deconstructor | private |
get_genotypes(vcflib::Variant &v, const vector< string > &names, const vector< int > &trav_to_allele) | vg::Deconstructor | private |
graph | vg::Deconstructor | private |
max_nodes_for_exhaustive | vg::Deconstructor | private |
outvcf | vg::Deconstructor | private |
path_restricted | vg::Deconstructor | private |
path_to_sample | vg::Deconstructor | private |
path_trav_finder | vg::Deconstructor | private |
ploidy | vg::Deconstructor | private |
ref_paths | vg::Deconstructor | private |
sample_names | vg::Deconstructor | private |
snarl_manager | vg::Deconstructor | private |
trav_finder | vg::Deconstructor | private |
~Deconstructor() | vg::Deconstructor |