vg
tools for working with variation graphs
Here is a list of all file members with links to the files they belong to:
- o -
omp_get_num_threads() :
utility.cpp
OPT_ALT_PATHS :
mpmap_main.cpp
OPT_ALWAYS_CHECK_POPULATION :
mpmap_main.cpp
OPT_APPROX_EXP :
mpmap_main.cpp
OPT_BAND_PADDING_MULTIPLIER :
mpmap_main.cpp
OPT_BUILD_VGI_INDEX :
index_main.cpp
OPT_CLUSTER_STDEV :
giraffe_main.cpp
OPT_COMPONENT_MIN_DIST :
mpmap_main.cpp
OPT_EXCLUDE_UNALIGNED :
map_main.cpp
OPT_FAN_OUT_DIFF :
mpmap_main.cpp
OPT_FAN_OUT_QUAL :
mpmap_main.cpp
OPT_FORCE_HAPLOTYPE_COUNT :
mpmap_main.cpp
OPT_FRAGMENT_MEAN :
giraffe_main.cpp
OPT_FRAGMENT_STDEV :
giraffe_main.cpp
OPT_GREEDY_MEM_RESTART_MAX_LCP :
mpmap_main.cpp
OPT_GREEDY_MIN_DIST :
mpmap_main.cpp
OPT_HARD_HIT_MAX_MULTIPLIER :
mpmap_main.cpp
OPT_MAX_FANS_OUT :
mpmap_main.cpp
OPT_MAX_PATHS :
mpmap_main.cpp
OPT_MAX_RESCUE_ATTEMPTS :
mpmap_main.cpp
OPT_MAX_RESCUE_P_VALUE :
mpmap_main.cpp
OPT_MIN_DIST_CLUSTER :
mpmap_main.cpp
OPT_NO_CLUSTER :
mpmap_main.cpp
OPT_NO_GREEDY_MEM_RESTARTS :
mpmap_main.cpp
OPT_NO_OUTPUT :
mpmap_main.cpp
OPT_NOT_SPLICED :
mpmap_main.cpp
OPT_OUTPUT_BASENAME :
giraffe_main.cpp
OPT_PATH_RESCUE_GRAPH :
mpmap_main.cpp
OPT_PATHS_AS_SAMPLES :
index_main.cpp
OPT_PRUNE_EXP :
mpmap_main.cpp
OPT_RECOMBINATION_PENALTY :
mpmap_main.cpp
,
map_main.cpp
OPT_RENAME_VARIANTS :
index_main.cpp
OPT_REPORT_NAME :
giraffe_main.cpp
OPT_RESCUE_STDEV :
giraffe_main.cpp
OPT_SCORE_MATRIX :
align_main.cpp
,
map_main.cpp
OPT_SECONDARY_MAX_DIFF :
mpmap_main.cpp
OPT_SECONDARY_RESCUE_ATTEMPTS :
mpmap_main.cpp
OPT_SHORT_MEM_FILTER_FACTOR :
mpmap_main.cpp
OPT_STRIP_COUNT :
mpmap_main.cpp
OPT_STRIP_LENGTH :
mpmap_main.cpp
OPT_STRIPPED_MATCH :
mpmap_main.cpp
OPT_SUPPRESS_SUPPRESSION :
mpmap_main.cpp
OPT_SUPPRESS_TAIL_ANCHORS :
mpmap_main.cpp
OPT_TOP_TRACEBACKS :
mpmap_main.cpp
OPT_TRACK_CORRECTNESS :
giraffe_main.cpp
OPT_TRACK_PROVENANCE :
giraffe_main.cpp
OVERLOAD_PAIR_HASH :
hash_map.hpp
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