vg
tools for working with variation graphs
- a -
a_star() :
vg::algorithms
add_alt_allele() :
vg
add_connecting_edges_to_subgraph() :
vg::algorithms
add_log() :
vg
add_log10() :
vg
add_nodes_and_edges() :
vg
add_path_to_graph() :
vg
add_subpaths_to_subgraph() :
vg::algorithms
add_thread_edges_to_set() :
vg
add_thread_nodes_to_set() :
vg
addArbitraryTelomerePair() :
vg
adjacent_mappings() :
vg
advance_split() :
vg
aligned_interval() :
vg
alignment_end() :
vg
alignment_ends() :
vg
alignment_from_length() :
vg
alignment_from_path() :
vg
alignment_is_valid() :
vg
alignment_middle() :
vg
alignment_path_offsets() :
vg::algorithms
alignment_quality_char_to_short() :
vg::io
alignment_quality_per_node() :
vg
alignment_quality_short_to_char() :
vg::io
alignment_refpos_to_path_offsets() :
vg
alignment_set_distance_to_correct() :
vg
alignment_start() :
vg
alignment_to_bam() :
vg
alignment_to_bam_internal() :
vg
alignment_to_gaf() :
vg::io
alignment_to_length() :
vg
alignment_to_sam() :
vg
alignment_to_sam_internal() :
vg
allAmbiguousToN() :
vg
allATGC() :
bdsg
,
vg
allATGCN() :
bdsg
,
vg
allele_to_string() :
vg
annotate_with_initial_path_positions() :
vg::algorithms
annotate_with_node_path_positions() :
vg::algorithms
annotate_with_path_positions() :
vg::algorithms
append_cigar_operation() :
vg
append_handle_graph() :
vg::algorithms
append_mapping_sequence() :
vg::algorithms
append_multipath_alignment() :
vg
append_path() :
vg
append_path_handle_graph() :
vg::algorithms
apply_orientations() :
vg::algorithms
are_equivalent() :
vg::algorithms
are_equivalent_with_paths() :
vg::algorithms
as_handle() :
handlegraph
as_integer() :
handlegraph
as_integers() :
handlegraph
as_path_handle() :
handlegraph
augment() :
vg
augment_impl() :
vg
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