vg
tools for working with variation graphs
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Namespaces | |
algorithms | |
Classes | |
class | HashGraph |
class | ODGI |
class | PackedGraph |
Typedefs | |
using | nid_t = handlegraph::nid_t |
Functions | |
char | reverse_complement (const char &c) |
string | reverse_complement (const string &seq) |
void | reverse_complement_in_place (string &seq) |
bool | is_all_n (const string &seq) |
bool | allATGC (const string &s) |
bool | allATGCN (const string &s) |
string | nonATGCNtoN (const string &s) |
string | toUppercase (const string &s) |
string | format_memory (size_t s) |
int | get_thread_count (void) |
using bdsg::nid_t = typedef handlegraph::nid_t |
bool bdsg::allATGC | ( | const string & | s | ) |
bool bdsg::allATGCN | ( | const string & | s | ) |
string bdsg::format_memory | ( | size_t | s | ) |
int bdsg::get_thread_count | ( | void | ) |
bool bdsg::is_all_n | ( | const string & | seq | ) |
string bdsg::nonATGCNtoN | ( | const string & | s | ) |
char bdsg::reverse_complement | ( | const char & | c | ) |
string bdsg::reverse_complement | ( | const string & | seq | ) |
void bdsg::reverse_complement_in_place | ( | string & | seq | ) |
string bdsg::toUppercase | ( | const string & | s | ) |