vg
tools for working with variation graphs
Namespaces | Classes | Typedefs | Functions
bdsg Namespace Reference

Namespaces

 algorithms
 

Classes

class  HashGraph
 
class  ODGI
 
class  PackedGraph
 

Typedefs

using nid_t = handlegraph::nid_t
 

Functions

char reverse_complement (const char &c)
 
string reverse_complement (const string &seq)
 
void reverse_complement_in_place (string &seq)
 
bool is_all_n (const string &seq)
 
bool allATGC (const string &s)
 
bool allATGCN (const string &s)
 
string nonATGCNtoN (const string &s)
 
string toUppercase (const string &s)
 
string format_memory (size_t s)
 
int get_thread_count (void)
 

Typedef Documentation

◆ nid_t

Function Documentation

◆ allATGC()

bool bdsg::allATGC ( const string &  s)

◆ allATGCN()

bool bdsg::allATGCN ( const string &  s)

◆ format_memory()

string bdsg::format_memory ( size_t  s)

◆ get_thread_count()

int bdsg::get_thread_count ( void  )

◆ is_all_n()

bool bdsg::is_all_n ( const string &  seq)

◆ nonATGCNtoN()

string bdsg::nonATGCNtoN ( const string &  s)

◆ reverse_complement() [1/2]

char bdsg::reverse_complement ( const char &  c)

◆ reverse_complement() [2/2]

string bdsg::reverse_complement ( const string &  seq)

◆ reverse_complement_in_place()

void bdsg::reverse_complement_in_place ( string &  seq)

◆ toUppercase()

string bdsg::toUppercase ( const string &  s)