#include <readfilter.hpp>
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enum | FilterName {
read = 0,
wrong_name,
wrong_refpos,
excluded_feature,
min_score,
min_sec_score,
max_overhang,
min_end_matches,
min_mapq,
split,
repeat,
defray,
defray_all,
random,
min_base_qual,
filtered,
last
} |
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◆ FilterName
Enumerator |
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read | |
wrong_name | |
wrong_refpos | |
excluded_feature | |
min_score | |
min_sec_score | |
max_overhang | |
min_end_matches | |
min_mapq | |
split | |
repeat | |
defray | |
defray_all | |
random | |
min_base_qual | |
filtered | |
last | |
◆ Counts()
vg::ReadFilter::Counts::Counts |
( |
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inline |
◆ keep()
bool vg::ReadFilter::Counts::keep |
( |
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inline |
◆ operator+=()
Counts& vg::ReadFilter::Counts::operator+= |
( |
const Counts & |
other | ) |
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inline |
◆ reset()
void vg::ReadFilter::Counts::reset |
( |
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inline |
◆ set_paired_all()
Counts& vg::ReadFilter::Counts::set_paired_all |
( |
| ) |
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inline |
If not all reads were filtered, count filtered ones as unfiltered.
◆ set_paired_any()
Counts& vg::ReadFilter::Counts::set_paired_any |
( |
| ) |
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inline |
If any read was filtered, count the other read as filtered.
◆ counts
vector<size_t> vg::ReadFilter::Counts::counts |
The documentation for this struct was generated from the following file: