vg
tools for working with variation graphs
vg::MultipathAlignmentEmitter Member List

This is the complete list of members for vg::MultipathAlignmentEmitter, including all inherited members.

aln_emittersvg::MultipathAlignmentEmitterprivate
convert_multipath_alignment(const multipath_alignment_t &mp_aln, Alignment &aln, const string *prev_name=nullptr, const string *next_name=nullptr) constvg::MultipathAlignmentEmitterprivate
emit_pairs(const string &name_1, const string &name_2, vector< pair< multipath_alignment_t, multipath_alignment_t >> &&mp_aln_pairs)vg::MultipathAlignmentEmitter
emit_singles(const string &name, vector< multipath_alignment_t > &&mp_alns)vg::MultipathAlignmentEmitter
graphvg::MultipathAlignmentEmitterprivate
mp_aln_emittersvg::MultipathAlignmentEmitterprivate
MultipathAlignmentEmitter(ostream &out, int num_threads, const HandleGraph &graph, const string out_format="gamp")vg::MultipathAlignmentEmitter
multiplexervg::MultipathAlignmentEmitterprivate
outvg::MultipathAlignmentEmitterprivate
read_groupvg::MultipathAlignmentEmitterprivate
sample_namevg::MultipathAlignmentEmitterprivate
set_read_group(const string &read_group)vg::MultipathAlignmentEmitter
set_sample_name(const string &sample_name)vg::MultipathAlignmentEmitter
~MultipathAlignmentEmitter()vg::MultipathAlignmentEmitter