vg
tools for working with variation graphs
- f -
failed_filter :
vg::Funnel::Item
failed_statistic :
vg::Funnel::Item
failing :
vg::Funnel::FilterPerformance
failing_correct :
vg::Funnel::FilterPerformance
fanout_length_threshold :
vg::BaseMapper
fast_reseed :
vg::BaseMapper
fast_reseed_length_diff :
vg::BaseMapper
fasta_filename :
vg::IndexManager
fasta_to_vcf_renames :
vg::NameMapper
fd :
vg::io::fdinbuf
,
vg::io::fdoutbuf
feature_name :
vg::FeatureSet::Feature
feature_type :
vg::Transcriptome
features :
vg::FeatureSet
,
vg::SmallSnarlSimplifier
ff :
vg::SRPE
file :
vg::VcfBuffer
file_header :
vg::MinimumDistanceIndex
filenames :
vg::temp_file::Handler
,
vg::VGset
,
xg::temp_file::Handler
filter_matches :
vg::Filter
filter_on_all :
vg::ReadFilter
filter_short_mems :
vg::BaseMapper
first :
bdsg::ODGI::path_metadata_t
,
vg::FeatureSet::Feature
fixed_fragment_model :
vg::FragmentLengthStatistics
flank_range :
vg::VariantAdder
flat :
vg::Constructor
flat_node :
haplo::haplo_DP_rectangle
flush :
hFILE_backend
force_haplotype_count :
vg::MultipathMapper
force_phasing :
vg::HaplotypeIndexer
force_unequal :
handlegraph::PathForEachSocket::iterator
forks :
vg::algorithms::kmer_t
,
vg::algorithms::walk_t
,
vg::walk_t
format :
vg::HTSAlignmentEmitter
forward :
vg::Support
forward_graph :
vg::ReverseGraph
forward_multiplier :
vg::GreedyMinDistanceClusterer
forward_only :
vg::Sampler
frac_score :
vg::ReadFilter
frag_stats :
vg::Mapper
fragl_supports :
vg::BREAKPOINT
fragment :
vg::Alignment
,
vg::MaximalExactMatch
,
vg::SnarlSeedClusterer::Cluster
fragment_best_left :
vg::SnarlSeedClusterer::NodeClusters
fragment_best_right :
vg::SnarlSeedClusterer::NodeClusters
fragment_directions :
vg::FragmentLengthStatistics
fragment_distance_limit :
vg::SnarlSeedClusterer::TreeState
fragment_length_cache_size :
vg::FragmentLengthStatistics
fragment_length_distr :
vg::MinimizerMapper
,
vg::PairedEndMapper
fragment_length_distribution :
vg::Alignment
fragment_length_warning_factor :
vg::MultipathMapper
fragment_lengths :
vg::FragmentLengthStatistics
fragment_max :
vg::FragmentLengthStatistics
fragment_mean :
vg::NGSSimulator
fragment_model_update_interval :
vg::FragmentLengthStatistics
fragment_next :
vg::Alignment
fragment_orientations :
vg::FragmentLengthStatistics
fragment_prev :
vg::Alignment
fragment_sampler :
vg::NGSSimulator
fragment_score :
vg::Alignment
fragment_sd :
vg::NGSSimulator
fragment_sigma :
vg::FragmentLengthStatistics
fragment_size :
vg::FragmentLengthStatistics
fragment_union_find :
vg::SnarlSeedClusterer::TreeState
from :
vg::Edge
,
vg::Translation
from_length :
vg::Edit
from_node_id :
vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
from_start :
vg::Edge
frontier :
vg::IncrementalSubgraph
frontier_index :
vg::IncrementalSubgraph
full_length_bonus :
vg::GSSWAligner
funnel_name :
vg::Funnel
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