vg
tools for working with variation graphs
vg::MinimumDistanceIndex::SnarlIndex Member List

This is the complete list of members for vg::MinimumDistanceIndex::SnarlIndex, including all inherited members.

depthvg::MinimumDistanceIndex::SnarlIndexprotected
dist_to_ends(size_t rank, int64_t distL, int64_t distR) constvg::MinimumDistanceIndex::SnarlIndex
distancesvg::MinimumDistanceIndex::SnarlIndexprotected
end_idvg::MinimumDistanceIndex::SnarlIndexprotected
id_in_parentvg::MinimumDistanceIndex::SnarlIndexprotected
in_chainvg::MinimumDistanceIndex::SnarlIndexprotected
index(size_t start, size_t end) constvg::MinimumDistanceIndex::SnarlIndexprotected
insert_distance(size_t start, size_t end, int64_t dist)vg::MinimumDistanceIndex::SnarlIndex
is_simple_snarlvg::MinimumDistanceIndex::SnarlIndexprotected
is_trivial_snarl() constvg::MinimumDistanceIndex::SnarlIndex
is_unary_snarlvg::MinimumDistanceIndex::SnarlIndexprotected
load(istream &in, bool include_component)vg::MinimumDistanceIndex::SnarlIndex
max_widthvg::MinimumDistanceIndex::SnarlIndexprotected
MinimumDistanceIndex classvg::MinimumDistanceIndex::SnarlIndexfriend
node_length(size_t i) constvg::MinimumDistanceIndex::SnarlIndexinline
num_nodesvg::MinimumDistanceIndex::SnarlIndexprotected
parent_idvg::MinimumDistanceIndex::SnarlIndexprotected
print_self() constvg::MinimumDistanceIndex::SnarlIndex
rev_in_parentvg::MinimumDistanceIndex::SnarlIndexprotected
serialize(ostream &out) constvg::MinimumDistanceIndex::SnarlIndex
snarl_distance(size_t start, size_t end) constvg::MinimumDistanceIndex::SnarlIndexinline
snarl_length() constvg::MinimumDistanceIndex::SnarlIndex
snarl_to_json()vg::MinimumDistanceIndex::SnarlIndex
SnarlIndex(id_t parent_id, bool rev_in_parent, id_t id_in_parent, id_t end_id, bool is_unary_snarl, size_t depth, size_t num_nodes, bool in_chain)vg::MinimumDistanceIndex::SnarlIndex
SnarlIndex()vg::MinimumDistanceIndex::SnarlIndex
SnarlSeedClusterer classvg::MinimumDistanceIndex::SnarlIndexfriend