vg
tools for working with variation graphs
vg::SnarlSeedClusterer Member List

This is the complete list of members for vg::SnarlSeedClusterer, including all inherited members.

CHAIN enum valuevg::SnarlSeedClustererprivate
ChildNodeType enum namevg::SnarlSeedClustererprivate
cluster_chain_level(TreeState &tree_state, size_t depth) constvg::SnarlSeedClustererprivate
cluster_one_chain(TreeState &tree_state, size_t chain_i, size_t depth) constvg::SnarlSeedClustererprivate
cluster_one_node(TreeState &tree_state, id_t node_id, int64_t node_length) constvg::SnarlSeedClustererprivate
cluster_one_snarl(TreeState &tree_state, size_t snarl_index_i) constvg::SnarlSeedClustererprivate
cluster_only_top_level_chain_seeds(TreeState &tree_state, vector< pair< size_t, size_t >> &seed_clusters) constvg::SnarlSeedClustererprivate
cluster_seeds(const vector< Seed > &seeds, int64_t read_distance_limit) constvg::SnarlSeedClusterer
cluster_seeds(const vector< vector< Seed >> &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) constvg::SnarlSeedClusterer
cluster_seeds_internal(const vector< const vector< Seed > * > &all_seeds, int64_t read_distance_limit, int64_t fragment_distance_limit=0) constvg::SnarlSeedClustererprivate
cluster_simple_snarl(TreeState &tree_state, vector< tuple< id_t, bool, int64_t, int64_t, int64_t >> nodes, int64_t loop_left, int64_t loop_right, int64_t snarl_length) constvg::SnarlSeedClustererprivate
cluster_snarl_level(TreeState &tree_state, size_t depth) constvg::SnarlSeedClustererprivate
dist_indexvg::SnarlSeedClustererprivate
get_nodes(TreeState &tree_state, vector< hash_map< size_t, vector< pair< NetgraphNode, NodeClusters >>>> &snarl_to_nodes_by_level) constvg::SnarlSeedClustererprivate
NODE enum valuevg::SnarlSeedClustererprivate
SNARL enum valuevg::SnarlSeedClustererprivate
SnarlSeedClusterer(MinimumDistanceIndex &dist_index)vg::SnarlSeedClusterer
typeToString(ChildNodeType t)vg::SnarlSeedClustererinlineprivatestatic