vg
tools for working with variation graphs
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This is the complete list of members for vg::MCMCGenotyper, including all inherited members.
generate_continuous_uniform(const double a, const double b) const | vg::MCMCGenotyper | |
generate_discrete_uniform(minstd_rand0 &random_engine, int lower_bound, int upper_bound) const | vg::MCMCGenotyper | |
generate_initial_guess() const | vg::MCMCGenotyper | |
graph | vg::MCMCGenotyper | private |
log_target(unique_ptr< PhasedGenome > &phased_genome, const vector< multipath_alignment_t > &reads) const | vg::MCMCGenotyper | |
MCMCGenotyper(SnarlManager &snarls, VG &graph, const int n_iterations, const int seed) | vg::MCMCGenotyper | |
n_iterations | vg::MCMCGenotyper | private |
proposal_sample(unique_ptr< PhasedGenome > ¤t) const | vg::MCMCGenotyper | |
random_engine | vg::MCMCGenotyper | mutableprivate |
run_genotype(const vector< multipath_alignment_t > &reads, const double log_base) const | vg::MCMCGenotyper | |
seed | vg::MCMCGenotyper | private |
snarls | vg::MCMCGenotyper | private |