Here is a list of all class members with links to the classes they belong to:
- n -
- n_bins
: vg::Packer
- n_iterations
: vg::MCMCGenotyper
- name
: bdsg::HashGraph::path_t
, bdsg::ODGI::path_metadata_t
, gafkluge::GafStep
, vg::Alignment
, vg::BenchmarkResult
, vg::BREAKPOINT
, vg::Funnel::Stage
, vg::Index
, vg::Locus
, vg::MultipathAlignment
, vg::Node
, vg::Path
, vg::Position
, vg::Snarl
, vg::SnarlTraversal
, vg::subcommand::Subcommand
, vg::Transcript
, vg::TranscriptPath
, vg::VG
, vg::VG::Plan
- name_prefixes
: vg::ReadFilter
- name_to_aln
: vg::SRPE
- name_to_id
: vg::Paths
- NARROW_PAGE_WIDTH
: bdsg::PackedGraph
- nearest_offsets_in_paths()
: xg::XG
- nearest_path_node()
: xg::XG
- NestedTraversalFinder()
: vg::NestedTraversalFinder
- net_graph_of()
: vg::SnarlManager
- net_graphs
: vg::GenomeState
- net_node_lanes
: vg::SnarlState
- NetGraph()
: vg::NetGraph
- NetgraphNode()
: vg::SnarlSeedClusterer::NetgraphNode
- new_height()
: haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_length()
: haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_node
: haplo::hDP_gbwt_graph_accessor< GBWTType >
- new_node_record()
: bdsg::PackedGraph
- new_path_id()
: vg::Index
- new_side()
: haplo::hDP_gbwt_graph_accessor< GBWTType >
- next
: bdsg::HashGraph::path_mapping_t
, vg::Connection
, vg::connection_t
- Next()
: vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream
- next
: vg::PathBranch
, vg::PhasedGenome::HaplotypeNode
, vg::Subpath
, vg::subpath_t
, vg::WindowedVcfBuffer
- next_char
: vg::kmer_t
- next_chars
: vg::KmerPosition
- next_cost
: vg::AlignmentChainModelVertex
, vg::MEMChainModelVertex
- next_empty_alignment()
: vg::BandedGlobalAligner< IntType >::AltTracebackStack
- next_group
: vg::IndexedVG::CacheEntry
- next_is_empty()
: vg::BandedGlobalAligner< IntType >::AltTracebackStack
- next_nonce
: vg::Index
- next_path_id
: bdsg::HashGraph
- next_path_position()
: xg::XG
- next_pos
: vg::kmer_t
- next_pos_chars()
: vg::Sampler
- next_positions
: vg::KmerPosition
- next_size()
: vg::subpath_t
- next_snarl()
: vg::SnarlManager
- next_traceback_alignment()
: vg::BandedGlobalAligner< IntType >::AltTracebackStack
- NGSSimulator()
: vg::NGSSimulator
- nid_to_graph_iv
: bdsg::PackedGraph
- no_clustering
: vg::MultipathMapper
- NO_CODE
: vg::MIPayload
- no_Ns
: vg::Sampler
- NO_VALUE
: vg::MIPayload
- node
: vg::BandedGlobalAligner< IntType >::BAMatrix
, vg::CactusSide
, vg::Graph
, vg::NodeSide
, vg::NodeTraversal
- NODE
: vg::SnarlSeedClusterer
- Node
: vg::Tree< T >
- node()
: xg::XGPath
- node_at_vector_offset()
: handlegraph::VectorizableHandleGraph
, xg::XG
- node_by_id
: vg::VG
- node_cache
: vg::Sampler
- node_count
: vg::DagifiedGraph
, vg::VG
, xg::XG
- node_count_next()
: vg::VG
- node_count_prev()
: vg::VG
- node_graph_idx()
: xg::XG
- node_id
: vg::KmerMatch
, vg::LocationSupport
, vg::mapping_t
, vg::NodePileup
, vg::Position
, vg::position_t
, vg::SnarlSeedClusterer::NetgraphNode
, vg::Visit
- node_id_to_idx
: vg::BandedGlobalAligner< IntType >
- node_index
: vg::DozeuInterface::graph_pos_s
, vg::Packer
, vg::VG
- NODE_LEN_OFFSET
: vg::MIPayload
- node_length()
: vg::MinimumDistanceIndex
, vg::MinimumDistanceIndex::SnarlIndex
, vg::PathIndex
, vg::Sampler
, vg::SnarlSeedClusterer::Seed
, vg::SourceSinkOverlay
- node_lengths
: haplo::gbwt_thread_t
- node_locations
: vg::PhasedGenome
- node_mapping
: vg::Paths
- node_mappings
: vg::BandedGlobalAligner< IntType >::BABuilder
- NODE_MEMBER_RECORD_SIZE
: bdsg::PackedGraph
- node_occurrences
: vg::PathIndex
- node_offset()
: vg::Viz
- node_path_position()
: vg::Index
- node_path_to_string()
: vg::Index
- node_path_traversal_counts()
: vg::Paths
- node_path_traversals()
: vg::Paths
- node_pileups
: vg::Pileup
- node_pos
: vg::DepthMap
- node_qual_bin_size
: vg::Packer
- node_quality_bin_offset()
: vg::Packer
- node_quality_bin_size()
: vg::Packer
- node_quality_civ
: vg::Packer
- node_quality_dynamic
: vg::Packer
- node_quality_locks
: vg::Packer
- node_quality_vector_size()
: vg::Packer
- node_rank()
: vg::VG
- node_start_at_path_position()
: xg::XG
- node_starts_in_path()
: vg::VG
- node_subset
: vg::SubgraphOverlay
- node_supports
: vg::SupportAugmentedGraph
- node_t()
: bdsg::HashGraph::node_t
- node_to_component
: vg::MinimumDistanceIndex
- node_to_position
: vg::Filter
- node_to_seeds
: vg::SnarlSeedClusterer::TreeState
- node_to_variant
: vg::VCFTraversalFinder
- node_traversal
: vg::PhasedGenome::HaplotypeNode
- node_type
: vg::SnarlSeedClusterer::NetgraphNode
- node_v
: bdsg::ODGI
- node_vector_offset()
: handlegraph::VectorizableHandleGraph
, xg::XG
- node_weight_callback
: vg::FlowTraversalFinder
- NodeClusters()
: vg::SnarlSeedClusterer::NodeClusters
- nodelength()
: haplo::gbwt_thread_t
- nodes
: haplo::gbwt_thread_t
, vg::FlowSort::Growth
, vg::MaximalExactMatch
, vg::MEMClusterer::DPScoreComparator
, vg::MEMClusterer::HitGraph
- nodes_before_offset()
: vg::Viz
- nodes_next()
: vg::VG
- nodes_prev()
: vg::VG
- NodeSide()
: vg::NodeSide
- NodeTraversal()
: vg::NodeTraversal
- nodeType
: haplo::linear_haplo_structure
- nonce
: vg::Sampler
- nondisjoint()
: haplo::int_itvl_t
- nonoverlapping_node_context_without_paths()
: vg::VG
- normal_aligners
: vg::Genotyper
- normal_distribution()
: vg::normal_distribution< T >
- normal_supports
: vg::BREAKPOINT
- np_bv
: xg::XG
- np_bv_select
: xg::XG
- np_iv
: xg::XG
- nr_iv
: xg::XG
- nt_table
: vg::DinucleotideMachine
, vg::GSSWAligner
- nth_copy_of_handle()
: vg::DagifiedGraph
- Null
: vg::multipath_alignment_t
- NullClusterer()
: vg::NullClusterer
- NullMaskingGraph()
: vg::NullMaskingGraph
- num_alt_alns
: vg::MultipathMapper
- num_bases
: vg::BasePileup
- num_bases_dynamic
: vg::Packer
- num_edges_dynamic
: vg::Packer
- num_forward_reads
: vg::EdgePileup
- num_haplotypes()
: vg::PhasedGenome
- num_items
: vg::ShuffledPairs
- num_left_handles
: vg::JoinedSpliceGraph
- num_mapping_attempts
: vg::MultipathMapper
- num_nodes
: vg::MinimumDistanceIndex::SnarlIndex
- num_nodes_dynamic
: vg::Packer
- num_null_nodes
: vg::DozeuPinningOverlay
, vg::NullMaskingGraph
- num_pairs
: vg::ShuffledPairs
- num_reads
: vg::EdgePileup
- num_snarls()
: vg::SnarlManager
- num_threads
: vg::Transcriptome
- nx_iv
: xg::XG