vg
tools for working with variation graphs
- h -
handle :
bdsg::HashGraph::path_mapping_t
,
vg::io::BlockedGzipInputStream
,
vg::io::BlockedGzipOutputStream
handle_base_option :
vg::ConfigurableParser
handle_graph :
vg::MinDistanceClusterer
,
vg::TargetValueSearch
handle_idxs :
vg::JoinedSpliceGraph
handle_val_range :
vg::DagifiedGraph
,
vg::DozeuPinningOverlay
handles :
xg::XGPath
haplo_node :
vg::PhasedGenome::iterator
haplo_score_provider :
vg::BaseMapper
haploid_prior_logprob :
vg::Genotyper
haplotype :
vg::AppendHaplotypeCommand
,
vg::ReplaceSnarlHaplotypeCommand
haplotype_consistency_exponent :
vg::BaseMapper
haplotype_number :
vg::PhasedGenome::iterator
haplotype_origin_ids :
vg::TranscriptPath
haplotypes :
vg::PhasedGenome
,
vg::SnarlState
hard_hit_cap :
vg::MinimizerMapper
hard_hit_max :
vg::BaseMapper
has_buffer :
vg::VcfBuffer
has_chain :
vg::MinimumDistanceIndex
has_chain_bv :
vg::MinimumDistanceIndex
has_content :
vg::BitStringTree< Item >::TreeNode
has_correct :
vg::Funnel::Stage
has_reachability_edges :
vg::MultipathAlignmentGraph
has_secondary_snarl :
vg::MinimumDistanceIndex
has_secondary_snarl_bv :
vg::MinimumDistanceIndex
has_supports :
vg::RepresentativeTraversalFinder
head :
bdsg::HashGraph::path_t
head_tail_nodes :
vg::Paths
header_mutex :
vg::HTSAlignmentEmitter
here :
vg::Range< Number >
het_prior_logprob :
vg::Genotyper
heterozygous_prior_ln :
vg::FixedGenotypePriorCalculator
hint_paths :
vg::CactusSnarlFinder
hit_cap :
vg::MinimizerMapper
hit_max :
vg::BaseMapper
hits :
vg::MinimizerMapper::Minimizer
homozygous_prior_ln :
vg::FixedGenotypePriorCalculator
hts_mode :
vg::HTSAlignmentEmitter
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