vg
tools for working with variation graphs
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#include "algorithms/nearest_offsets_in_paths.hpp"
#include "aligner.hpp"
#include "vg/io/alignment_emitter.hpp"
#include "gapless_extender.hpp"
#include "mapper.hpp"
#include "min_distance.hpp"
#include "seed_clusterer.hpp"
#include "snarls.hpp"
#include "tree_subgraph.hpp"
#include "funnel.hpp"
#include <gbwtgraph/minimizer.h>
#include <structures/immutable_list.hpp>
#include <atomic>
Classes | |
class | vg::MinimizerMapper |
struct | vg::MinimizerMapper::Minimizer |
Namespaces | |
vg | |
Defines a mapper that uses the minimizer index and GBWT-based extension.