vg
tools for working with variation graphs
- e -
early_stop_number :
vg::ComponentMinDistanceClusterer
eat_trivial_children :
vg::RepresentativeTraversalFinder
edge :
vg::EdgePileup
,
vg::Graph
edge_by_sides :
vg::VG
edge_cache :
vg::Sampler
edge_count :
xg::XG
edge_cov_bin_size :
vg::Packer
edge_coverage_civ :
vg::Packer
edge_coverage_dynamic :
vg::Packer
edge_index :
vg::VG
edge_lists_iv :
bdsg::PackedGraph
edge_locks :
vg::Packer
edge_max :
PruningParameters
,
vg::VariantAdder
EDGE_NEXT_OFFSET :
bdsg::PackedGraph
edge_pileups :
vg::Pileup
EDGE_RECORD_SIZE :
bdsg::PackedGraph
edge_support_cache :
vg::CachedPackedTraversalSupportFinder
edge_supports :
vg::SupportAugmentedGraph
EDGE_TRAV_OFFSET :
bdsg::PackedGraph
edge_weight :
vg::FlowSort::WeightedGraph
edge_weight_callback :
vg::FlowTraversalFinder
edges :
vg::PathNode
edges_from :
vg::MEMClusterer::HitNode
edges_in_nodes :
vg::FlowSort::WeightedGraph
edges_on_end :
vg::VG
edges_on_start :
vg::VG
edges_out_nodes :
vg::FlowSort::WeightedGraph
edges_to :
vg::MEMClusterer::HitNode
edit :
vg::Mapping
edit_count :
vg::Packer
edit_csas :
vg::Packer
edit_length :
vg::BandedGlobalAligner< IntType >::BABuilder
,
vg::Packer
edit_read_end_idx :
vg::BandedGlobalAligner< IntType >::BABuilder
edit_tmpfile_names :
vg::Packer
embedded_alignments :
vg::AugmentedGraph
emitter :
vg::GAFOutputCaller
empty_edge_ends :
vg::VG
empty_full_paths :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
empty_ids :
vg::VG
empty_score :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
end :
gafkluge::GafStep
,
vg::algorithms::kmer_t
,
vg::algorithms::walk_t
,
vg::GFFRecord
,
vg::kmer_t
,
vg::MaximalExactMatch
,
vg::NetGraph
,
vg::PathNode
,
vg::Range< Number >
,
vg::Region
,
vg::Snarl
,
vg::walk_t
end_file :
vg::io::BlockedGzipOutputStream
end_id :
vg::MinimumDistanceIndex::ChainIndex
,
vg::MinimumDistanceIndex::SnarlIndex
END_LEN_OFFSET :
vg::MIPayload
end_length :
vg::SnarlSeedClusterer::Seed
end_marker :
xg::XG
end_self_reachable :
vg::Snarl
end_sep :
vg::Index
endpoints :
vg::GraphSynchronizer::Lock
entries :
haplo::haplo_DP_column
exclude_unaligned :
vg::BaseMapper
excluded_features :
vg::ReadFilter
excluded_refpos_contigs :
vg::ReadFilter
excluded_samples :
vg::HaplotypeIndexer
exons :
vg::Transcript
exp_rho :
haplo::haploMath::RRMemo
expected_depth :
vg::PoissonSupportSnarlCaller::PoissonCallInfo
expected_separation :
vg::GreedyMinDistanceClusterer
extender :
vg::MinimizerMapper
extension_score_threshold :
vg::MinimizerMapper
extension_set_score_threshold :
vg::MinimizerMapper
extra_data :
vg::FeatureSet::Feature
extra_multimaps :
vg::Mapper
extract_left :
vg::IncrementalSubgraph
extracted :
vg::IncrementalSubgraph
extracted_index :
vg::IncrementalSubgraph
Generated by
1.8.18