vg
tools for working with variation graphs
- d -
dagify_steps :
vg::Genotyper
data :
handlegraph::handle_t
,
handlegraph::path_handle_t
,
handlegraph::step_handle_t
,
vg::SmallBitset
,
vg::SpliceMotifs
data_width :
vg::Packer
db :
vg::Index
db_options :
vg::Index
debug :
vg::BaseMapper
DEFAULT_PATH_WEIGHT :
vg::FlowSort
default_sequence_quality :
vg::Genotyper
default_value :
vg::BaseOption< Value, Parser >
defining_path :
vg::PathSubgraph
defrag_factor :
bdsg::PackedGraph
defray_count :
vg::ReadFilter
defray_length :
vg::ReadFilter
deleted_bases :
bdsg::PackedGraph
deleted_edge_records :
bdsg::PackedGraph
deleted_membership_records :
bdsg::PackedGraph
deleted_node_bv :
bdsg::ODGI
deleted_node_records :
bdsg::PackedGraph
deleted_prior_logprob :
vg::Genotyper
deleted_reversing_self_edge_records :
bdsg::PackedGraph
deletions :
vg::DeleteHaplotypeCommand
,
vg::ReplaceLocalHaplotypeCommand
delim1 :
vg::Packer
delim2 :
vg::Packer
depth :
vg::MinimumDistanceIndex::SnarlIndex
,
vg::SRPE
depth_err :
vg::PoissonSupportSnarlCaller::PoissonCallInfo
depth_index :
vg::PoissonSupportSnarlCaller
depth_padding_factor :
vg::PoissonSupportSnarlCaller
depths :
vg::DepthMap
description :
vg::BaseOption< Value, Parser >
,
vg::subcommand::Subcommand
dinuc_machine :
vg::MultipathMapper
diploid_prior_logprob :
vg::Genotyper
directed_acyclic_net_graph :
vg::Snarl
discard_overlaps :
vg::HaplotypeIndexer
discordant_insert_size :
vg::Alignment
dist_index :
vg::SnarlSeedClusterer
distance :
vg::IndexManager
,
vg::MEMClusterer::HitEdge
distance_index :
vg::MinDistanceClusterer
,
vg::MinimizerMapper
,
vg::MultipathMapper
,
vg::SnarlMinDistance
,
vg::SnarlOrientedDistanceMeasurer
,
vg::TipAnchoredMaxDistance
distance_limit :
vg::MinimizerMapper
distance_measurer :
vg::OrientedDistanceClusterer
distance_override :
vg::IndexManager
distances :
vg::MinimumDistanceIndex::SnarlIndex
do_dp :
vg::MinimizerMapper
do_remap :
vg::Filter
do_spliced_alignment :
vg::MultipathMapper
do_svs :
vg::Constructor
doubling_steps :
vg::VariantAdder
downsample_probability :
vg::ReadFilter
downsample_seed_mask :
vg::ReadFilter
DP_column :
haplo::haplo_DP
dp_score :
vg::MEMClusterer::HitNode
drop_chain :
vg::Mapper
drop_hairpin_paths :
vg::SmallSnarlSimplifier
drop_split :
vg::ReadFilter
duplicated_handles :
vg::DozeuPinningOverlay
dynamic_max_alt_alns :
vg::MultipathMapper
dz :
vg::DozeuInterface
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