vg
tools for working with variation graphs
Classes | Namespaces | Functions
gfa_to_handle.hpp File Reference
#include <iostream>
#include <gfakluge.hpp>
#include <cctype>
#include "../handle.hpp"

Classes

struct  vg::algorithms::GFAFormatError
 This exception will be thrown if the GFA data is not acceptable. More...
 

Namespaces

 vg
 
 vg::algorithms
 

Functions

void vg::algorithms::gfa_to_handle_graph (const string &filename, MutableHandleGraph *graph, bool try_from_disk, bool try_id_increment_hint)
 
void vg::algorithms::gfa_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, bool try_from_disk=true, bool try_id_increment_hint=false)
 Same as gfa_to_handle_graph but also adds path elements from the GFA to the graph. More...
 
void vg::algorithms::gfa_to_path_handle_graph_in_memory (istream &in, MutablePathMutableHandleGraph *graph)
 

Detailed Description

Defines algorithms for copying data from GFA files into handle graphs