vg
tools for working with variation graphs
- c -
cache_mutex :
vg::IndexedVG
cached_fragment_direction :
vg::FragmentLengthStatistics
cached_fragment_length_mean :
vg::FragmentLengthStatistics
cached_fragment_length_stdev :
vg::FragmentLengthStatistics
cached_fragment_orientation_same :
vg::FragmentLengthStatistics
cached_genotypes :
vg::WindowedVcfBuffer
candidates_per_window :
vg::MinimizerMapper::Minimizer
category :
vg::subcommand::Subcommand
chain_assignments :
vg::MinimumDistanceIndex
chain_deletions :
vg::Constructor
chain_end :
vg::ChainIterator
chain_end_rewrites :
vg::NetGraph
chain_ends_by_start :
vg::NetGraph
chain_indexes :
vg::MinimumDistanceIndex
chain_ranks :
vg::MinimumDistanceIndex
chain_start :
vg::ChainIterator
chain_to_snarls :
vg::SnarlSeedClusterer::TreeState
char_assignment :
bdsg::PackedGraph
char_count :
vg::Pictographs
chars :
vg::Pictographs
checkin_high_water_kb :
vg::Watchdog::thread_state_t
child_chains :
vg::SnarlManager::SnarlRecord
children :
vg::BitStringTree< Item >::TreeNode
,
vg::SnarlManager::SnarlRecord
,
vg::TreeNode< T >
,
vg::TreeSubgraph
chrom :
vg::Transcript
chrom_length :
vg::Transcript
circular :
vg::Paths
close :
hFILE_backend
cluster_coverage_threshold :
vg::MinimizerMapper
cluster_score_threshold :
vg::MinimizerMapper
clusterer :
vg::MinimizerMapper
codenames :
vg::Version
codes_by_option :
vg::ConfigurableParser
cohort :
haplo::linear_haplo_structure
col_idx :
vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
collapse_transcript_paths :
vg::Transcriptome
colors :
vg::Colors
column_family_options :
vg::Index
column_of :
vg::NGSSimulator::MarkovDistribution< From, To >
COMPILER :
vg::Version
complement :
vg::ChainIterator
,
vg::ReverseGraph
complement_filter :
vg::ReadFilter
component :
vg::SnarlSeedClusterer::Seed
component_min_dist :
vg::MultipathMapper
component_path_set_of_path :
vg::PathComponentIndex
component_path_sets :
vg::PathComponentIndex
component_to_chain_index :
vg::MinimumDistanceIndex
component_to_chain_length :
vg::MinimumDistanceIndex
component_to_index :
vg::SnarlSeedClusterer::TreeState
components :
vg::MEMClusterer::HitGraph
cond_distrs :
vg::NGSSimulator::MarkovDistribution< From, To >
configurables :
vg::ConfigurableParser
connection :
vg::Subpath
connectivity :
vg::NetGraph
consistent :
vg::Genotyper::Affinity
content :
vg::BitStringTree< Item >::TreeNode
contents :
vg::SubHandleGraph
context_bases :
vg::GraphSynchronizer::Lock
contig :
vg::BREAKPOINT
control_mean :
vg::BenchmarkResult
control_stddev :
vg::BenchmarkResult
coordinates :
vg::Exon
correct :
vg::Alignment
,
vg::Funnel::Item
correctly_mapped :
vg::Alignment
count :
bdsg::HashGraph::path_t
counts :
vg::ReadFilter::Counts
cov_bin_size :
vg::Packer
coverage :
vg::SnarlSeedClusterer::Cluster
coverage_civ :
vg::Packer
coverage_dynamic :
vg::Packer
cr :
vg::Viz
crossing_edges :
vg::PhaseUnfolder
cumulative_seq_len :
vg::BandedGlobalAligner< IntType >::BAMatrix
curr :
vg::algorithms::kmer_t
,
vg::algorithms::walk_t
,
vg::kmer_t
,
vg::PathBranch
,
vg::walk_t
curr_deflxn :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
curr_traceback :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
current :
vg::IncrementIter
,
vg::WindowedVcfBuffer
current_id :
vg::VG
current_node_id :
vg::BandedGlobalAligner< IntType >::BABuilder
current_node_sequence :
vg::BandedGlobalAligner< IntType >::BABuilder
CURRENT_VERSION :
xg::XG
cursor_pool :
vg::IndexedVG
cursor_pool_mutex :
vg::IndexedVG
cursor_streams :
vg::IndexedVG
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