vg
tools for working with variation graphs
vg
ReadFilter
vg::ReadFilter Member List
This is the complete list of members for
vg::ReadFilter
, including all inherited members.
append_regions
vg::ReadFilter
buffer_size
vg::ReadFilter
complement_filter
vg::ReadFilter
defray_count
vg::ReadFilter
defray_length
vg::ReadFilter
downsample_probability
vg::ReadFilter
downsample_seed_mask
vg::ReadFilter
drop_split
vg::ReadFilter
excluded_features
vg::ReadFilter
excluded_refpos_contigs
vg::ReadFilter
filter
(istream *alignment_stream)
vg::ReadFilter
filter_alignment
(Alignment &aln)
vg::ReadFilter
filter_on_all
vg::ReadFilter
frac_score
vg::ReadFilter
graph
vg::ReadFilter
has_repeat
(Alignment &aln, int k)
vg::ReadFilter
private
interleaved
vg::ReadFilter
is_split
(Alignment &alignment)
vg::ReadFilter
private
max_overhang
vg::ReadFilter
min_base_quality
vg::ReadFilter
min_base_quality_fraction
vg::ReadFilter
min_end_matches
vg::ReadFilter
min_mapq
vg::ReadFilter
min_primary
vg::ReadFilter
min_secondary
vg::ReadFilter
name_prefixes
vg::ReadFilter
repeat_size
vg::ReadFilter
rescore
vg::ReadFilter
sample_read
(const Alignment &read)
vg::ReadFilter
private
sub_score
vg::ReadFilter
threads
vg::ReadFilter
trim_ambiguous_end
(Alignment &alignment, int k)
vg::ReadFilter
private
trim_ambiguous_ends
(Alignment &alignment, int k)
vg::ReadFilter
verbose
vg::ReadFilter
write_output
vg::ReadFilter
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