vg
tools for working with variation graphs
vg::IndexManager Member List

This is the complete list of members for vg::IndexManager, including all inherited members.

basenamevg::IndexManagerprotected
can_get(IndexHolderType &member, const string &filename_override, const string &extension, const function< bool(void)> &poll_dependencies) constvg::IndexManagerprotected
can_get_distance() constvg::IndexManager
can_get_gbwt() constvg::IndexManager
can_get_gbwtgraph() constvg::IndexManager
can_get_graph() constvg::IndexManager
can_get_minimizer() constvg::IndexManager
can_get_snarls() constvg::IndexManager
create_progress(const string &message, long count)vg::Progressive
create_progress(long count)vg::Progressive
destroy_progress(void)vg::Progressive
distancevg::IndexManagerprotected
distance_overridevg::IndexManagerprotected
ensure(IndexHolderType &member, const string &filename_override, const string &extension, const function< void(ifstream &)> &load, const function< void(ofstream &)> &make_and_save)vg::IndexManagerprotected
ensure_distance()vg::IndexManagerprotected
ensure_gbwt()vg::IndexManagerprotected
ensure_gbwtgraph()vg::IndexManagerprotected
ensure_graph()vg::IndexManagerprotected
ensure_minimizer()vg::IndexManagerprotected
ensure_snarls()vg::IndexManagerprotected
fasta_filenamevg::IndexManagerprotected
gbwtvg::IndexManagerprotected
gbwt_overridevg::IndexManagerprotected
gbwtgraphvg::IndexManagerprotected
gbwtgraph_overridevg::IndexManagerprotected
get_distance()vg::IndexManager
get_filename(const string &extension) constvg::IndexManagerprotected
get_gbwt()vg::IndexManager
get_gbwtgraph()vg::IndexManager
get_graph()vg::IndexManager
get_minimizer()vg::IndexManager
get_snarls()vg::IndexManager
graphvg::IndexManagerprotected
graph_overridevg::IndexManagerprotected
increment_progress()vg::Progressive
IndexManager(const string &fasta_filename="", const string &vcf_filename="")vg::IndexManager
last_progressvg::Progressiveprivate
minimizervg::IndexManagerprotected
minimizer_kvg::IndexManagerstatic
minimizer_overridevg::IndexManagerprotected
minimizer_wvg::IndexManagerstatic
preload_progress(const string &message)vg::Progressive
progressvg::Progressiveprivate
progress_countvg::Progressiveprivate
progress_messagevg::Progressiveprivate
progress_seenvg::Progressiveprivate
set_distance_override(const string &filename)vg::IndexManager
set_fasta_filename(const string &filename)vg::IndexManager
set_gbwt_override(const string &filename)vg::IndexManager
set_gbwtgraph_override(const string &filename)vg::IndexManager
set_graph_override(const string &filename)vg::IndexManager
set_minimizer_override(const string &filename)vg::IndexManager
set_snarls_override(const string &filename)vg::IndexManager
set_vcf_filename(const string &filename)vg::IndexManager
show_progressvg::Progressive
snarlsvg::IndexManagerprotected
snarls_overridevg::IndexManagerprotected
update_progress(long i)vg::Progressive
vcf_filenamevg::IndexManagerprotected