vg
tools for working with variation graphs
algorithms Directory Reference

Files

file  a_star.hpp
 
file  alignment_path_offsets.cpp
 
file  alignment_path_offsets.hpp
 
file  append_graph.cpp
 
file  append_graph.hpp
 
file  apply_bulk_modifications.cpp
 
file  apply_bulk_modifications.hpp
 
file  approx_path_distance.cpp
 
file  approx_path_distance.hpp
 
file  are_equivalent.cpp
 
file  are_equivalent.hpp
 
file  copy_graph.cpp
 
file  copy_graph.hpp
 
file  count_walks.cpp
 
file  count_walks.hpp
 
file  coverage_depth.cpp
 
file  coverage_depth.hpp
 
file  dagify.cpp
 
file  dagify.hpp
 
file  dfs.cpp
 
file  dfs.hpp
 
file  dijkstra.cpp
 
file  dijkstra.hpp
 
file  distance_to_head.cpp
 
file  distance_to_head.hpp
 
file  distance_to_tail.cpp
 
file  distance_to_tail.hpp
 
file  eades_algorithm.cpp
 
file  eades_algorithm.hpp
 
file  expand_context.cpp
 
file  expand_context.hpp
 
file  extend.cpp
 
file  extend.hpp
 
file  extract_connecting_graph.cpp
 
file  extract_connecting_graph.hpp
 
file  extract_containing_graph.cpp
 
file  extract_containing_graph.hpp
 
file  extract_extending_graph.cpp
 
file  extract_extending_graph.hpp
 
file  find_shortest_paths.cpp
 
file  find_shortest_paths.hpp
 
file  find_tips.cpp
 
file  find_tips.hpp
 
file  gfa_to_handle.cpp
 
file  gfa_to_handle.hpp
 
file  id_sort.cpp
 
file  id_sort.hpp
 
file  is_acyclic.cpp
 
file  is_acyclic.hpp
 
file  is_single_stranded.cpp
 
file  is_single_stranded.hpp
 
file  jump_along_path.cpp
 
file  jump_along_path.hpp
 
file  k_widest_paths.cpp
 
file  k_widest_paths.hpp
 
file  kmer.cpp
 
file  kmer.hpp
 
file  merge.cpp
 
file  merge.hpp
 
file  nearest_offsets_in_paths.cpp
 
file  nearest_offsets_in_paths.hpp
 
file  next_pos_chars.cpp
 
file  next_pos_chars.hpp
 
file  normalize.cpp
 
file  normalize.hpp
 
file  path_string.cpp
 
file  path_string.hpp
 
file  remove_high_degree.cpp
 
file  remove_high_degree.hpp
 
file  reverse_complement.cpp
 
file  reverse_complement.hpp
 
file  shortest_cycle.cpp
 
file  shortest_cycle.hpp
 
file  simplify_siblings.cpp
 
file  simplify_siblings.hpp
 
file  sorted_id_ranges.cpp
 
file  sorted_id_ranges.hpp
 
file  split_strands.cpp
 
file  split_strands.hpp
 
file  strongly_connected_components.cpp
 
file  strongly_connected_components.hpp
 
file  subgraph.cpp
 
file  subgraph.hpp
 
file  three_edge_connected_components.cpp
 
file  three_edge_connected_components.hpp
 
file  to_gfa.cpp
 
file  to_gfa.hpp
 
file  topological_sort.cpp
 
file  topological_sort.hpp
 
file  unchop.cpp
 
file  unchop.hpp
 
file  walk.cpp
 
file  walk.hpp
 
file  weakly_connected_components.cpp
 
file  weakly_connected_components.hpp