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nid_t | vg::algorithms::parse_gfa_sequence_id (const string &str) |
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void | vg::algorithms::validate_gfa_edge (const gfak::edge_elem &e) |
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string | vg::algorithms::process_raw_gfa_path_name (const string &path_name_raw) |
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void | vg::algorithms::gfa_to_handle_graph_in_memory (istream &in, MutableHandleGraph *graph, gfak::GFAKluge &gg) |
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void | vg::algorithms::gfa_to_handle_graph_on_disk (const string &filename, MutableHandleGraph *graph, bool try_id_increment_hint, gfak::GFAKluge &gg) |
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void | vg::algorithms::gfa_to_handle_graph_load_graph (const string &filename, istream *unseekable, MutableHandleGraph *graph, bool try_id_increment_hint, gfak::GFAKluge &gg) |
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void | vg::algorithms::gfa_to_handle_graph_add_paths (const string &filename, istream *unseekable, MutablePathHandleGraph *graph, gfak::GFAKluge &gg) |
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void | vg::algorithms::gfa_to_handle_graph (const string &filename, MutableHandleGraph *graph, bool try_from_disk, bool try_id_increment_hint) |
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void | vg::algorithms::gfa_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, bool try_from_disk=true, bool try_id_increment_hint=false) |
| Same as gfa_to_handle_graph but also adds path elements from the GFA to the graph. More...
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void | vg::algorithms::gfa_to_path_handle_graph_in_memory (istream &in, MutablePathMutableHandleGraph *graph) |
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