Here is a list of all class members with links to the classes they belong to:
- l -
- lane
: vg::ReplaceSnarlHaplotypeCommand
- large_alignment_band_padding
: vg::VariantAdder
- larger_prime
: vg::ShuffledPairs
- last
: bdsg::ODGI::path_metadata_t
, vg::FeatureSet::Feature
, vg::ReadFilter::Counts
- last_checkin
: vg::Watchdog::thread_state_t
- last_correct_stage()
: vg::Funnel
- last_group_min_id
: vg::StreamIndexBase
- last_node_length
: vg::PathIndex
- last_progress
: vg::Progressive
- latest()
: vg::Funnel
- layout_order
: vg::DagifiedGraph
- layout_order_of_handle()
: vg::DagifiedGraph
- lcp
: vg::BaseMapper
- lcp_ind
: vg::Filter
- left
: vg::Support
- left_border
: vg::Viz
- left_degree()
: vg::VG
- left_edges
: bdsg::HashGraph::node_t
- left_ends
: vg::ConstructedChunk
- left_full
: vg::GaplessExtension
- left_handle_trans
: vg::JoinedSpliceGraph
- left_maximal
: vg::GaplessExtension
- left_seed_node()
: vg::JoinedSpliceGraph
- left_splice_node()
: vg::JoinedSpliceGraph
- left_splice_offset
: vg::JoinedSpliceGraph
- left_subgraph
: vg::JoinedSpliceGraph
- left_telomere_node
: vg::PhasedGenome::Haplotype
- LegacyCaller()
: vg::LegacyCaller
- length
: bdsg::ODGI::path_metadata_t
, haplo::haplo_DP_column
, haplo::hDP_gbwt_graph_accessor< GBWTType >
, vg::BitString
, vg::GaplessExtension
, vg::mapping_t
, vg::MaximalExactMatch
, vg::MinimizerMapper::Minimizer
, vg::Path
, vg::VG
, vg::walk_t
- LENGTH_MASK
: vg::MIPayload
- LENGTH_WIDTH
: vg::MIPayload
- lengths
: vg::FragmentLengthDistribution
- less_than()
: vg::StreamSorter< Message >
- likelihood
: vg::Genotype
- likelihood_ln
: vg::Genotyper::Affinity
- likelihoods()
: vg::VG
- likely_mate_positions()
: vg::Mapper
- likely_mismapping()
: vg::MultipathMapper
- likely_misrescue()
: vg::MultipathMapper
- linear_haplo_structure()
: haplo::linear_haplo_structure
- LinearScoreProvider()
: haplo::LinearScoreProvider
- link_steps()
: bdsg::ODGI
- links_iv
: bdsg::PackedGraph::PackedPath
- load()
: bdsg::ODGI
, vg::MinimumDistanceIndex::ChainIndex
, vg::MinimumDistanceIndex
, vg::MinimumDistanceIndex::SnarlIndex
, vg::Packer
, vg::Packers
, vg::Paths
, vg::StreamIndexBase
, vg::Translator
, xg::XGPath
- load_alignments()
: vg::MSAConverter
- load_all()
: vg::io::VPKG
- load_bed()
: vg::FeatureSet
- LOAD_FINISHED
: vg::io::VPKG
- load_from_file()
: vg::Packer
- load_from_old_version()
: xg::XGPath
- load_graph()
: vg::Index
- load_into_one()
: vg::io::VPKG
- load_one()
: vg::io::VPKG
- load_pack_as_supports()
: vg::SupportAugmentedGraph
- load_paths()
: vg::Index
- LOAD_SEARCHING
: vg::io::VPKG
- LOAD_SUCCESS
: vg::io::VPKG
- load_supports()
: vg::SupportAugmentedGraph
- load_translations()
: vg::AugmentedGraph
- LoadProgress
: vg::io::VPKG
- local_handle()
: xg::XGPath
- Lock()
: vg::GraphSynchronizer::Lock
- lock()
: vg::GraphSynchronizer::Lock
- locked_nodes
: vg::GraphSynchronizer::Lock
, vg::GraphSynchronizer
- locus
: vg::Alignment
- locus_to_variant()
: vg::Genotyper
- log_base
: vg::GSSWAligner
- log_continue_factor()
: haplo::haploMath::RRMemo
- log_continue_probability
: haplo::haploMath::RRMemo
- log_likelihood
: vg::Genotype
- log_likelihood_approx_factor
: vg::MultipathMapper
- log_population_size()
: haplo::haploMath::RRMemo
- log_posterior
: vg::Genotype
- log_prior
: vg::Genotype
- log_recombination_penalty()
: haplo::haploMath::RRMemo
- log_target()
: vg::MCMCGenotyper
- logRRDiff()
: haplo::haploMath::RRMemo
- logS()
: haplo::haploMath::RRMemo
- logS_bases
: haplo::haploMath::RRMemo
- logT()
: haplo::haploMath::RRMemo
- logT_base
: haplo::haploMath::RRMemo
- long_opt
: vg::BaseOption< Value, Parser >
- long_options
: vg::ConfigurableParser
- long_options_used
: vg::ConfigurableParser
- longest_detectable_gap()
: vg::GSSWAligner
- longest_paths_in_forest()
: vg::IntegratedSnarlFinder::MergedAdjacencyGraph
- loop_distance()
: vg::MinimumDistanceIndex::ChainIndex
- loop_fd
: vg::MinimumDistanceIndex::ChainIndex
- loop_rev
: vg::MinimumDistanceIndex::ChainIndex
- lower_bound
: vg::BREAKPOINT
- lower_bound_heuristic
: vg::TargetValueSearch
- lowercase_warned_alt
: vg::Constructor
- lowercase_warned_sequences
: vg::Constructor
- lru_cache_size
: vg::Packer