vg
tools for working with variation graphs
vg::MemoizingGraph Member List

This is the complete list of members for vg::MemoizingGraph, including all inherited members.

edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
flip(const handle_t &handle) constvg::MemoizingGraphvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const function< bool(const handle_t &)> &iteratee) constvg::MemoizingGraphvirtual
handlegraph::PathPositionHandleGraph::follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::MemoizingGraphvirtual
handlegraph::PathPositionHandleGraph::for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) const =0handlegraph::HandleGraphprotectedpure virtual
for_each_path_handle(const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_path_handle_impl(const std::function< bool(const path_handle_t &)> &iteratee) constvg::MemoizingGraphprotectedvirtual
for_each_step_in_path(const path_handle_t &path, const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_step_on_handle(const handle_t &handle, const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_step_on_handle_impl(const handle_t &handle, const std::function< bool(const step_handle_t &)> &iteratee) constvg::MemoizingGraphprotectedvirtual
for_each_step_position_on_handle(const handle_t &handle, const std::function< bool(const step_handle_t &, const bool &, const size_t &)> &iteratee) constvg::MemoizingGraphprotectedvirtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) consthandlegraph::HandleGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const id_t &node_id, bool is_reverse=false) constvg::MemoizingGraphvirtual
get_handle_memovg::MemoizingGraphprivate
get_handle_of_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
get_id(const handle_t &handle) constvg::MemoizingGraphvirtual
get_is_circular(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
get_is_reverse(const handle_t &handle) constvg::MemoizingGraphvirtual
get_length(const handle_t &handle) constvg::MemoizingGraphvirtual
get_next_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
get_node_count() constvg::MemoizingGraphvirtual
get_path_count() constvg::MemoizingGraphvirtual
get_path_handle(const std::string &path_name) constvg::MemoizingGraphvirtual
get_path_handle_of_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
get_path_length(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
get_path_name(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
get_position_of_step(const step_handle_t &step) constvg::MemoizingGraphvirtual
get_previous_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
get_sequence(const handle_t &handle) constvg::MemoizingGraphvirtual
get_step_at_position(const path_handle_t &path, const size_t &position) constvg::MemoizingGraphvirtual
get_step_count(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) consthandlegraph::HandleGraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
graphvg::MemoizingGraphprivate
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_next_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
has_node(id_t node_id) constvg::MemoizingGraphvirtual
has_path(const std::string &path_name) constvg::MemoizingGraphvirtual
has_previous_step(const step_handle_t &step_handle) constvg::MemoizingGraphvirtual
is_empty(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
max_handle_memo_sizevg::MemoizingGraph
max_node_id() constvg::MemoizingGraphvirtual
max_steps_of_handle_memo_sizevg::MemoizingGraph
MemoizingGraph(const PathPositionHandleGraph *graph)vg::MemoizingGraph
MemoizingGraph()=defaultvg::MemoizingGraph
min_node_id() constvg::MemoizingGraphvirtual
path_back(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
path_begin(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
path_end(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
path_front_end(const path_handle_t &path_handle) constvg::MemoizingGraphvirtual
scan_path(const path_handle_t &path) consthandlegraph::PathHandleGraph
steps_of_handle(const handle_t &handle, bool match_orientation=false) constvg::MemoizingGraphvirtual
steps_of_handle_memovg::MemoizingGraphprivate
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual
~MemoizingGraph()=defaultvg::MemoizingGraph
~PathHandleGraph()=defaulthandlegraph::PathHandleGraphvirtual
~PathPositionHandleGraph()=defaulthandlegraph::PathPositionHandleGraphvirtual