vg
tools for working with variation graphs
vg::PathSubgraphOverlay Member List

This is the complete list of members for vg::PathSubgraphOverlay, including all inherited members.

backing_graphvg::SubgraphOverlayprotected
backing_path_graphvg::PathSubgraphOverlayprotected
edge_handle(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraph
flip(const handle_t &handle) constvg::SubgraphOverlayvirtual
follow_edges(const handle_t &handle, bool go_left, const Iteratee &iteratee) consthandlegraph::HandleGraph
follow_edges_impl(const handle_t &handle, bool go_left, const std::function< bool(const handle_t &)> &iteratee) constvg::SubgraphOverlayprotectedvirtual
for_each_edge(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle(const Iteratee &iteratee, bool parallel=false) consthandlegraph::HandleGraph
for_each_handle_impl(const std::function< bool(const handle_t &)> &iteratee, bool parallel=false) constvg::SubgraphOverlayprotectedvirtual
for_each_path_handle(const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_path_handle_impl(const std::function< bool(const path_handle_t &)> &iteratee) constvg::PathSubgraphOverlayprotectedvirtual
for_each_step_in_path(const path_handle_t &path, const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_step_on_handle(const handle_t &handle, const Iteratee &iteratee) consthandlegraph::PathHandleGraph
for_each_step_on_handle_impl(const handle_t &handle, const std::function< bool(const step_handle_t &)> &iteratee) constvg::PathSubgraphOverlayprotectedvirtual
forward(const handle_t &handle) consthandlegraph::HandleGraph
get_base(const handle_t &handle, size_t index) consthandlegraph::HandleGraphvirtual
get_degree(const handle_t &handle, bool go_left) consthandlegraph::HandleGraphvirtual
get_edge_count() consthandlegraph::HandleGraphvirtual
get_handle(const nid_t &node_id, bool is_reverse=false) constvg::SubgraphOverlayvirtual
get_handle_of_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
get_id(const handle_t &handle) constvg::SubgraphOverlayvirtual
get_is_circular(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
get_is_reverse(const handle_t &handle) constvg::SubgraphOverlayvirtual
get_length(const handle_t &handle) constvg::SubgraphOverlayvirtual
get_next_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
get_node_count() constvg::SubgraphOverlayvirtual
get_path_count() constvg::PathSubgraphOverlayvirtual
get_path_handle(const std::string &path_name) constvg::PathSubgraphOverlayvirtual
get_path_handle_of_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
get_path_name(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
get_previous_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
get_sequence(const handle_t &handle) constvg::SubgraphOverlayvirtual
get_step_count(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
get_subsequence(const handle_t &handle, size_t index, size_t size) consthandlegraph::HandleGraphvirtual
get_total_length() consthandlegraph::HandleGraphvirtual
has_edge(const handle_t &left, const handle_t &right) consthandlegraph::HandleGraphvirtual
has_edge(const edge_t &edge) consthandlegraph::HandleGraphinline
has_next_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
has_node(nid_t node_id) constvg::SubgraphOverlayvirtual
has_path(const std::string &path_name) constvg::PathSubgraphOverlayvirtual
has_previous_step(const step_handle_t &step_handle) constvg::PathSubgraphOverlayvirtual
is_empty(const path_handle_t &path_handle) consthandlegraph::PathHandleGraphvirtual
max_nodevg::SubgraphOverlayprotected
max_node_id() constvg::SubgraphOverlayvirtual
min_nodevg::SubgraphOverlayprotected
min_node_id() constvg::SubgraphOverlayvirtual
node_subsetvg::SubgraphOverlayprotected
path_back(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
path_begin(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
path_end(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
path_front_end(const path_handle_t &path_handle) constvg::PathSubgraphOverlayvirtual
path_subsetvg::PathSubgraphOverlayprotected
PathSubgraphOverlay(const PathHandleGraph *backing, const unordered_set< nid_t > *node_subset)vg::PathSubgraphOverlay
scan_path(const path_handle_t &path) consthandlegraph::PathHandleGraph
steps_of_handle(const handle_t &handle, bool match_orientation=false) consthandlegraph::PathHandleGraphvirtual
SubgraphOverlay(const HandleGraph *backing, const unordered_set< nid_t > *node_subset)vg::SubgraphOverlay
traverse_edge_handle(const edge_t &edge, const handle_t &left) consthandlegraph::HandleGraph
~HandleGraph()=defaulthandlegraph::HandleGraphvirtual
~PathHandleGraph()=defaulthandlegraph::PathHandleGraphvirtual
~PathSubgraphOverlay()vg::PathSubgraphOverlayvirtual
~SubgraphOverlay()vg::SubgraphOverlayvirtual