vg
tools for working with variation graphs
Namespaces | Functions
gfa_to_handle.cpp File Reference
#include "gfa_to_handle.hpp"

Namespaces

 vg
 
 vg::algorithms
 

Functions

nid_t vg::algorithms::parse_gfa_sequence_id (const string &str)
 
void vg::algorithms::validate_gfa_edge (const gfak::edge_elem &e)
 
string vg::algorithms::process_raw_gfa_path_name (const string &path_name_raw)
 
void vg::algorithms::gfa_to_handle_graph_in_memory (istream &in, MutableHandleGraph *graph, gfak::GFAKluge &gg)
 
void vg::algorithms::gfa_to_handle_graph_on_disk (const string &filename, MutableHandleGraph *graph, bool try_id_increment_hint, gfak::GFAKluge &gg)
 
void vg::algorithms::gfa_to_handle_graph_load_graph (const string &filename, istream *unseekable, MutableHandleGraph *graph, bool try_id_increment_hint, gfak::GFAKluge &gg)
 
void vg::algorithms::gfa_to_handle_graph_add_paths (const string &filename, istream *unseekable, MutablePathHandleGraph *graph, gfak::GFAKluge &gg)
 
void vg::algorithms::gfa_to_handle_graph (const string &filename, MutableHandleGraph *graph, bool try_from_disk, bool try_id_increment_hint)
 
void vg::algorithms::gfa_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, bool try_from_disk=true, bool try_id_increment_hint=false)
 Same as gfa_to_handle_graph but also adds path elements from the GFA to the graph. More...
 
void vg::algorithms::gfa_to_path_handle_graph_in_memory (istream &in, MutablePathMutableHandleGraph *graph)