This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.
batch_file_prefix | vg::HaplotypeIndexer | |
build_gbwt(PathHandleGraph *graph, std::string vcf_filename, bool delete_graph) const | vg::HaplotypeIndexer | |
build_gbwt(const PathHandleGraph *graph) const | vg::HaplotypeIndexer | |
build_gbwt(const PathHandleGraph *graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format) const | vg::HaplotypeIndexer | |
create_progress(const string &message, long count) | vg::Progressive | |
create_progress(long count) | vg::Progressive | |
destroy_progress(void) | vg::Progressive | |
discard_overlaps | vg::HaplotypeIndexer | |
excluded_samples | vg::HaplotypeIndexer | |
force_phasing | vg::HaplotypeIndexer | |
gbwt_buffer_size | vg::HaplotypeIndexer | |
HaplotypeIndexer() | vg::HaplotypeIndexer | |
id_interval | vg::HaplotypeIndexer | |
increment_progress() | vg::Progressive | |
last_progress | vg::Progressive | private |
max_missing_variant_warnings | vg::HaplotypeIndexer | |
parse_vcf(PathHandleGraph *graph, const std::vector< path_handle_t > &contigs, vcflib::VariantCallFile &variant_file, std::vector< std::string > &sample_names, const function< void(size_t, const gbwt::VariantPaths &, gbwt::PhasingInformation &)> &handle_contig_haplotype_batch, bool delete_graph) const | vg::HaplotypeIndexer | |
path_to_vcf | vg::HaplotypeIndexer | |
paths_as_samples | vg::HaplotypeIndexer | |
phase_homozygous | vg::HaplotypeIndexer | |
preload_progress(const string &message) | vg::Progressive | |
progress | vg::Progressive | private |
progress_count | vg::Progressive | private |
progress_message | vg::Progressive | private |
progress_seen | vg::Progressive | private |
regions | vg::HaplotypeIndexer | |
rename_variants | vg::HaplotypeIndexer | |
sample_range | vg::HaplotypeIndexer | |
samples_in_batch | vg::HaplotypeIndexer | |
show_progress | vg::Progressive | |
update_progress(long i) | vg::Progressive | |
warn_on_missing_variants | vg::HaplotypeIndexer | |