vg
tools for working with variation graphs
vg::SRPE Member List

This is the complete list of members for vg::SRPE, including all inherited members.

aln_to_bseq(Alignment &a, fml_seq1_t *read)vg::SRPE
aln_to_matevg::SRPE
assemble(vector< Alignment > alns, vector< fml_utg_t > &unitigs)vg::SRPE
assemble(string refpath, int64_t start_pos, int64_t end_pos, vector< fml_utg_t > &unitigs)vg::SRPE
assemble(int64_t node_id, int64_t offset, int window_size)vg::SRPE
call_svs(string graphfile, string gamfile, string refpath)vg::SRPE
call_svs_paired_end(vg::VG *graph, ifstream &gamstream, vector< BREAKPOINT > &bps, string refpath="")vg::SRPE
call_svs_split_read(vg::VG *graph, ifstream &gamstream, vector< BREAKPOINT > &bps, string refpath="")vg::SRPE
depthvg::SRPE
discordance_score(vector< Alignment > alns, VG *subgraph)vg::SRPE
ffvg::SRPE
graphvg::SRPE
intervalsvg::SRPE
max_readsvg::SRPE
name_to_alnvg::SRPE
overlapping_refsvg::SRPE
pindexesvg::SRPE
ref_namesvg::SRPE