vg
tools for working with variation graphs
vg::MCMCGenotyper Member List

This is the complete list of members for vg::MCMCGenotyper, including all inherited members.

generate_continuous_uniform(const double a, const double b) constvg::MCMCGenotyper
generate_discrete_uniform(minstd_rand0 &random_engine, int lower_bound, int upper_bound) constvg::MCMCGenotyper
generate_initial_guess() constvg::MCMCGenotyper
graphvg::MCMCGenotyperprivate
log_target(unique_ptr< PhasedGenome > &phased_genome, const vector< multipath_alignment_t > &reads) constvg::MCMCGenotyper
MCMCGenotyper(SnarlManager &snarls, VG &graph, const int n_iterations, const int seed)vg::MCMCGenotyper
n_iterationsvg::MCMCGenotyperprivate
proposal_sample(unique_ptr< PhasedGenome > &current) constvg::MCMCGenotyper
random_enginevg::MCMCGenotypermutableprivate
run_genotype(const vector< multipath_alignment_t > &reads, const double log_base) constvg::MCMCGenotyper
seedvg::MCMCGenotyperprivate
snarlsvg::MCMCGenotyperprivate