vg
tools for working with variation graphs
- g -
g_bv :
xg::XG
g_bv_rank :
xg::XG
g_bv_select :
xg::XG
g_graph :
vg::DepthMap
g_iv :
xg::XG
G_NODE_HEADER_LENGTH :
xg::XG
G_NODE_ID_OFFSET :
xg::XG
G_NODE_LEFT_COUNT_OFFSET :
xg::XG
G_NODE_LENGTH_OFFSET :
xg::XG
G_NODE_RIGHT_COUNT_OFFSET :
xg::XG
G_NODE_SEQ_START_OFFSET :
xg::XG
gaf_output :
vg::FlowCaller
,
vg::VCFGenotyper
gaf_sample_name :
vg::GAFOutputCaller
gap_extension :
vg::GSSWAligner
,
vg::SSWAligner
gap_memo_max_size :
vg::MultipathMapper
gap_open :
vg::GSSWAligner
,
vg::SSWAligner
gbwt :
vg::GBWTTraversalFinder
,
vg::IndexManager
gbwt_buffer_size :
vg::HaplotypeIndexer
gbwt_graph :
vg::MinimizerMapper
gbwt_index :
vg::PhaseUnfolder
gbwt_override :
vg::IndexManager
gbwtgraph :
vg::IndexManager
gbwtgraph_override :
vg::IndexManager
gc_content_estimate :
vg::AlignerClient
gcsa :
vg::BaseMapper
gcsa_ind :
vg::Filter
genome :
vg::MCMCCaller
genotype :
vg::Locus
genotype_snarls :
vg::FlowCaller
get_edge_support :
vg::RepresentativeTraversalFinder
get_handle_memo :
vg::MemoizingGraph
get_index :
vg::RepresentativeTraversalFinder
get_node_support :
vg::RepresentativeTraversalFinder
get_rescue_graph_from_paths :
vg::MultipathMapper
go_left :
vg::ChainIterator
gq :
vg::PoissonSupportSnarlCaller::PoissonCallInfo
graph :
bdsg::HashGraph
,
handlegraph::PathForEachSocket
,
handlegraph::PathForEachSocket::iterator
,
haplo::hDP_gbwt_graph_accessor< GBWTType >
,
haplo::linear_haplo_structure
,
vg::AugmentedGraph
,
vg::BandedGlobalAligner< IntType >::AltTracebackStack
,
vg::BandedGlobalAligner< IntType >
,
vg::CactusSnarlFinder
,
vg::ConstructedChunk
,
vg::DagifiedGraph
,
vg::Deconstructor
,
vg::DozeuInterface::OrderedGraph
,
vg::DozeuPinningOverlay
,
vg::ExhaustiveTraversalFinder
,
vg::FlowCaller
,
vg::FlowTraversalFinder
,
vg::GaplessExtender
,
vg::GBWTTraversalFinder
,
vg::GraphSynchronizer
,
vg::HandleGraphSnarlFinder
,
vg::IdentityOverlay
,
vg::IncrementalSubgraph
,
vg::IndexManager
,
vg::IntegratedSnarlFinder::MergedAdjacencyGraph
,
vg::io::GafAlignmentEmitter
,
vg::LegacyCaller
,
vg::MCMCGenotyper
,
vg::MemoizingGraph
,
vg::MultipathAlignmentEmitter
,
vg::NetGraph
,
vg::NGSSimulator
,
vg::NullMaskingGraph
,
vg::Packer
,
vg::PathBasedTraversalFinder
,
vg::PathChunker
,
vg::PathOrientedDistanceMeasurer
,
vg::PathRestrictedTraversalFinder
,
vg::PathTraversalFinder
,
vg::RareVariantSimplifier
,
vg::ReadFilter
,
vg::RegionExpander
,
vg::RepresentativeTraversalFinder
,
vg::SmallSnarlSimplifier
,
vg::SnarlState
,
vg::SplicedHTSAlignmentEmitter
,
vg::SRPE
,
vg::StrandSplitGraph
,
vg::SupportBasedSnarlCaller
,
vg::Surjector
,
vg::TraversalSupportFinder
,
vg::TrivialTraversalFinder
,
vg::VariantAdder
,
vg::VCFGenotyper
,
vg::VCFTraversalFinder
,
vg::VG
,
vg::VG::Plan
GRAPH_END_EDGES_OFFSET :
bdsg::PackedGraph
graph_id_hidden_set :
bdsg::ODGI
graph_iv :
bdsg::PackedGraph
graph_override :
vg::IndexManager
GRAPH_RECORD_SIZE :
bdsg::PackedGraph
GRAPH_START_EDGES_OFFSET :
bdsg::PackedGraph
greedy_min_dist :
vg::MultipathMapper
greedy_pieces :
vg::Constructor
greedy_restart_assume_substitution :
vg::BaseMapper
greedy_restart_max_count :
vg::BaseMapper
greedy_restart_max_lcp :
vg::BaseMapper
greedy_restart_min_length :
vg::BaseMapper
group :
vg::io::MessageEmitter
group_cache :
vg::IndexedVG
group_count :
vg::io::MessageIterator
group_handlers :
vg::io::MessageEmitter
,
vg::io::ProtobufEmitter< T >
group_idx :
vg::io::MessageIterator
group_size :
vg::Funnel::Item
group_tag :
vg::io::MessageEmitter
group_vo :
vg::io::MessageIterator
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