vg
tools for working with variation graphs
src
algorithms
algorithms Directory Reference
Files
file
a_star.hpp
file
alignment_path_offsets.cpp
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alignment_path_offsets.hpp
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append_graph.cpp
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append_graph.hpp
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apply_bulk_modifications.cpp
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apply_bulk_modifications.hpp
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approx_path_distance.cpp
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approx_path_distance.hpp
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are_equivalent.cpp
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are_equivalent.hpp
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copy_graph.cpp
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copy_graph.hpp
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count_walks.cpp
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count_walks.hpp
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coverage_depth.cpp
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coverage_depth.hpp
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dagify.cpp
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dagify.hpp
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dfs.cpp
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dfs.hpp
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dijkstra.cpp
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dijkstra.hpp
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distance_to_head.cpp
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distance_to_head.hpp
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distance_to_tail.cpp
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distance_to_tail.hpp
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eades_algorithm.cpp
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eades_algorithm.hpp
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expand_context.cpp
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expand_context.hpp
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extend.cpp
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extend.hpp
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extract_connecting_graph.cpp
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extract_connecting_graph.hpp
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extract_containing_graph.cpp
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extract_containing_graph.hpp
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extract_extending_graph.cpp
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extract_extending_graph.hpp
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find_shortest_paths.cpp
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find_shortest_paths.hpp
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find_tips.cpp
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find_tips.hpp
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gfa_to_handle.cpp
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gfa_to_handle.hpp
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id_sort.cpp
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id_sort.hpp
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is_acyclic.cpp
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is_acyclic.hpp
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is_single_stranded.cpp
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is_single_stranded.hpp
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jump_along_path.cpp
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jump_along_path.hpp
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k_widest_paths.cpp
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k_widest_paths.hpp
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kmer.cpp
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kmer.hpp
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merge.cpp
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merge.hpp
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nearest_offsets_in_paths.cpp
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nearest_offsets_in_paths.hpp
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next_pos_chars.cpp
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next_pos_chars.hpp
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normalize.cpp
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normalize.hpp
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path_string.cpp
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path_string.hpp
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remove_high_degree.cpp
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remove_high_degree.hpp
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reverse_complement.cpp
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reverse_complement.hpp
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shortest_cycle.cpp
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shortest_cycle.hpp
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simplify_siblings.cpp
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simplify_siblings.hpp
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sorted_id_ranges.cpp
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sorted_id_ranges.hpp
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split_strands.cpp
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split_strands.hpp
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strongly_connected_components.cpp
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strongly_connected_components.hpp
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subgraph.cpp
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subgraph.hpp
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three_edge_connected_components.cpp
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three_edge_connected_components.hpp
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to_gfa.cpp
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to_gfa.hpp
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topological_sort.cpp
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topological_sort.hpp
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unchop.cpp
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unchop.hpp
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walk.cpp
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walk.hpp
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weakly_connected_components.cpp
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weakly_connected_components.hpp
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