vg
tools for working with variation graphs
vg::HaplotypeIndexer Member List

This is the complete list of members for vg::HaplotypeIndexer, including all inherited members.

batch_file_prefixvg::HaplotypeIndexer
build_gbwt(PathHandleGraph *graph, std::string vcf_filename, bool delete_graph) constvg::HaplotypeIndexer
build_gbwt(const PathHandleGraph *graph) constvg::HaplotypeIndexer
build_gbwt(const PathHandleGraph *graph, const std::vector< std::string > &aln_filenames, const std::string &aln_format) constvg::HaplotypeIndexer
create_progress(const string &message, long count)vg::Progressive
create_progress(long count)vg::Progressive
destroy_progress(void)vg::Progressive
discard_overlapsvg::HaplotypeIndexer
excluded_samplesvg::HaplotypeIndexer
force_phasingvg::HaplotypeIndexer
gbwt_buffer_sizevg::HaplotypeIndexer
HaplotypeIndexer()vg::HaplotypeIndexer
id_intervalvg::HaplotypeIndexer
increment_progress()vg::Progressive
last_progressvg::Progressiveprivate
max_missing_variant_warningsvg::HaplotypeIndexer
parse_vcf(PathHandleGraph *graph, const std::vector< path_handle_t > &contigs, vcflib::VariantCallFile &variant_file, std::vector< std::string > &sample_names, const function< void(size_t, const gbwt::VariantPaths &, gbwt::PhasingInformation &)> &handle_contig_haplotype_batch, bool delete_graph) constvg::HaplotypeIndexer
path_to_vcfvg::HaplotypeIndexer
paths_as_samplesvg::HaplotypeIndexer
phase_homozygousvg::HaplotypeIndexer
preload_progress(const string &message)vg::Progressive
progressvg::Progressiveprivate
progress_countvg::Progressiveprivate
progress_messagevg::Progressiveprivate
progress_seenvg::Progressiveprivate
regionsvg::HaplotypeIndexer
rename_variantsvg::HaplotypeIndexer
sample_rangevg::HaplotypeIndexer
samples_in_batchvg::HaplotypeIndexer
show_progressvg::Progressive
update_progress(long i)vg::Progressive
warn_on_missing_variantsvg::HaplotypeIndexer