vg
tools for working with variation graphs
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This is the complete list of members for vg::SRPE, including all inherited members.
aln_to_bseq(Alignment &a, fml_seq1_t *read) | vg::SRPE | |
aln_to_mate | vg::SRPE | |
assemble(vector< Alignment > alns, vector< fml_utg_t > &unitigs) | vg::SRPE | |
assemble(string refpath, int64_t start_pos, int64_t end_pos, vector< fml_utg_t > &unitigs) | vg::SRPE | |
assemble(int64_t node_id, int64_t offset, int window_size) | vg::SRPE | |
call_svs(string graphfile, string gamfile, string refpath) | vg::SRPE | |
call_svs_paired_end(vg::VG *graph, ifstream &gamstream, vector< BREAKPOINT > &bps, string refpath="") | vg::SRPE | |
call_svs_split_read(vg::VG *graph, ifstream &gamstream, vector< BREAKPOINT > &bps, string refpath="") | vg::SRPE | |
depth | vg::SRPE | |
discordance_score(vector< Alignment > alns, VG *subgraph) | vg::SRPE | |
ff | vg::SRPE | |
graph | vg::SRPE | |
intervals | vg::SRPE | |
max_reads | vg::SRPE | |
name_to_aln | vg::SRPE | |
overlapping_refs | vg::SRPE | |
pindexes | vg::SRPE | |
ref_names | vg::SRPE |