vg
tools for working with variation graphs
- u -
uf_handle() :
vg::IntegratedSnarlFinder::MergedAdjacencyGraph
uf_rank() :
vg::IntegratedSnarlFinder::MergedAdjacencyGraph
underflow() :
vg::io::fdinbuf
underlying_interval() :
vg::IncrementalSubgraph
,
vg::JoinedSpliceGraph
unescape_delim() :
vg::Packer
unescape_delims() :
vg::Packer
unfold() :
vg::PhaseUnfolder
,
vg::VG
unfold_component() :
vg::PhaseUnfolder
unfold_haplotypes() :
vg::GaplessExtender
uniform_int_distribution() :
vg::uniform_int_distribution< T >
uniform_real_distribution() :
vg::uniform_real_distribution< T >
unindex_edge_by_node_sides() :
vg::VG
unlock() :
vg::GraphSynchronizer::Lock
unmapped_filter() :
vg::Filter
unoriented_motif() :
vg::SpliceMotifs
unpack_bit() :
handlegraph::number_bool_packing
unpack_number() :
handlegraph::number_bool_packing
unpack_on_rev() :
bdsg::ODGI::edge_helper
unpack_other_rev() :
bdsg::ODGI::edge_helper
unpack_to_curr() :
bdsg::ODGI::edge_helper
unparse() :
vg::OptionValueParser< Value >
,
vg::OptionValueParser< vector< Item > >
unrecord() :
vg::SnarlManager
unreverse_graph() :
vg::GSSWAligner
unreverse_graph_mapping() :
vg::GSSWAligner
update_haplotype_index() :
vg::Transcriptome
update_in_out_edges() :
vg::FlowSort
update_inner_values() :
haplo::haplo_DP_column
update_mapping_positions() :
vg::PathIndex
update_path_indexes() :
vg::GraphSynchronizer
update_progress() :
vg::Progressive
update_score_vector() :
haplo::haplo_DP_column
update_scoring() :
vg::SpliceMotifs
update_state() :
vg::BandedGlobalAligner< IntType >::BABuilder
,
vg::DinucleotideMachine
update_vcf_header() :
vg::PoissonSupportSnarlCaller
,
vg::RatioSupportSnarlCaller
,
vg::SnarlCaller
update_vcf_info() :
vg::MCMCCaller
,
vg::PoissonSupportSnarlCaller
,
vg::RatioSupportSnarlCaller
,
vg::SnarlCaller
,
vg::SupportBasedSnarlCaller
used_bins_of_range() :
vg::StreamIndexBase
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