vg
tools for working with variation graphs
- o -
ODGI() :
bdsg::ODGI
of_node() :
vg::Paths
offset() :
vg::position_t
offsets_in_paths() :
xg::XG
on_group() :
vg::io::MessageEmitter
,
vg::io::ProtobufEmitter< T >
on_message() :
vg::io::ProtobufEmitter< T >
on_path_edit() :
vg::FeatureSet
one_end_anchored_filter() :
vg::Filter
open() :
vg::Index
open_all() :
vg::StreamSorter< Message >
open_for_bulk_load() :
vg::Index
open_for_write() :
vg::Index
open_read_only() :
vg::Index
operator Number() :
vg::Range< Number >
operator Value &() :
vg::BaseOption< Value, Parser >
operator!=() :
handlegraph::PathForEachSocket::iterator
,
vg::BitString
,
vg::ChainIterator
,
vg::GaplessExtension
,
vg::IncrementIter
,
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
,
vg::NodeSide
,
vg::NodeTraversal
,
vg::PhasedGenome::iterator
,
vg::ShuffledPairs::iterator
operator&=() :
vg::SmallBitset
operator()() :
std::hash< const vg::Snarl >
,
std::hash< handlegraph::handle_t >
,
std::hash< handlegraph::path_handle_t >
,
std::hash< handlegraph::step_handle_t >
,
std::hash< pair< A, B > >
,
std::hash< std::tuple< TT... > >
,
std::hash< vg::NodeSide >
,
std::hash< vg::NodeTraversal >
,
vg::discrete_distribution< T >
,
vg::DistanceHeuristic
,
vg::Genotyper::hash_ambiguous_allele_set
,
vg::Genotyper::hash_node_traversal
,
vg::Genotyper::hash_oriented_edge
,
vg::MEMClusterer::DPScoreComparator
,
vg::normal_distribution< T >
,
vg::SnarlMinDistance
,
vg::state_hash
,
vg::subcommand::Subcommand
,
vg::TipAnchoredMaxDistance
,
vg::uniform_int_distribution< T >
,
vg::uniform_real_distribution< T >
,
vg::wang_hash< handle_t >
,
vg::wang_hash< NodeSide >
,
vg::wang_hash< NodeTraversal >
,
vg::wang_hash< path_handle_t >
,
vg::wang_hash< std::pair< A, B > >
,
vg::wang_hash< T * >
,
vg::wang_hash< T, typename std::enable_if< std::is_integral< T >::value >::type >
,
vg::WideningPRNG< PRNG, OutType >
operator*() :
handlegraph::PathForEachSocket::iterator
,
vg::ChainIterator
,
vg::IncrementIter
,
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
,
vg::PhasedGenome::iterator
,
vg::ShuffledPairs::iterator
operator++() :
handlegraph::PathForEachSocket::iterator
,
vg::ChainIterator
,
vg::IncrementIter
,
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
,
vg::PhasedGenome::iterator
,
vg::ShuffledPairs::iterator
operator+=() :
vg::ReadFilter::Counts
operator->() :
vg::ChainIterator
operator<() :
vg::GaplessExtension
,
vg::MinimizerMapper::Minimizer
,
vg::NodeSide
,
vg::NodeTraversal
operator=() :
bdsg::HashGraph::path_t
,
handlegraph::PathForEachSocket::iterator
,
vg::AlignmentChainModelVertex
,
vg::BaseOption< Value, Parser >
,
vg::BitString
,
vg::connection_t
,
vg::edit_t
,
vg::HTSAlignmentEmitter
,
vg::IncrementIter
,
vg::IndexedVG::CacheEntry
,
vg::io::BlockedGzipInputStream
,
vg::io::BlockedGzipOutputStream
,
vg::io::MessageEmitter
,
vg::io::ProtobufEmitter< T >
,
vg::io::StreamMultiplexer
,
vg::MaximalExactMatch
,
vg::MEMChainModelVertex
,
vg::multipath_alignment_t
,
vg::path_mapping_t
,
vg::path_t
,
vg::Paths
,
vg::PhasedGenome::iterator
,
vg::PhasedGenome
,
vg::position_t
,
vg::QualAdjXdropAligner
,
vg::Range< Number >
,
vg::SmallBitset
,
vg::SnarlManager
,
vg::SnarlManager::SnarlRecord
,
vg::StreamIndexBase
,
vg::subpath_t
,
vg::VcfBuffer
,
vg::VG
,
vg::Watchdog
,
vg::WindowedVcfBuffer
,
vg::XdropAligner
,
xg::XG
,
xg::XGPath
operator==() :
handlegraph::PathForEachSocket::iterator
,
vg::BitString
,
vg::ChainIterator
,
vg::GaplessExtension
,
vg::IncrementIter
,
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
,
vg::NodeSide
,
vg::NodeTraversal
,
vg::PhasedGenome::iterator
,
vg::ShuffledPairs::iterator
operator[]() :
haplo::gbwt_thread_t
operator|=() :
vg::SmallBitset
optimal_score_on_genome() :
vg::PhasedGenome
optimize() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::MutableHandleGraph
,
vg::VG
Option() :
vg::Option< Value, Parser >
,
vg::Option< vector< Item >, Parser >
order_of() :
vg::IncrementalSubgraph
OrderedGraph() :
vg::DozeuInterface::OrderedGraph
orientation_from_old_edge_type() :
xg::XG
oriented_distance() :
vg::OrientedDistanceMeasurer
,
vg::PathOrientedDistanceMeasurer
,
vg::SnarlOrientedDistanceMeasurer
oriented_motif() :
vg::SpliceMotifs
OrientedDistanceClusterer() :
vg::OrientedDistanceClusterer
output_wabbit_map() :
Vectorizer
over_directed_edge() :
vg::Paths
over_edge() :
vg::Paths
overflow() :
vg::io::fdoutbuf
overlap() :
vg::BREAKPOINT
,
vg::GaplessExtension
overlay() :
vg::Translator
overlay_node_translations() :
vg::VG
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