vg
tools for working with variation graphs
- d -
DagifiedGraph() :
vg::DagifiedGraph
dagify() :
vg::VG
data_size() :
vg::SmallBitset
decode() :
vg::MIPayload
decode_nucleotide() :
bdsg::PackedGraph
decode_path_name() :
bdsg::PackedGraph
decode_traversal() :
bdsg::PackedGraph
decompose_genotype_fast() :
vg::WindowedVcfBuffer
deconstruct() :
vg::Deconstructor
deconstruct_site() :
vg::Deconstructor
Deconstructor() :
vg::Deconstructor
decrement_node_ids() :
vg::VG
decrement_rank() :
bdsg::ODGI
deduplicate_cluster_pairs() :
vg::MEMClusterer
deep_contents() :
vg::SnarlManager
deflect_to_matrix() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack
Deflection() :
vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
defragment() :
bdsg::PackedGraph
defragment_path() :
bdsg::PackedGraph
delete_haplotype() :
vg::GenomeState
delete_variant_index() :
vg::VCFTraversalFinder
deletion_filter() :
vg::Filter
depth_filter() :
vg::Filter
DepthMap() :
vg::DepthMap
describe() :
vg::io::VPKG
deserialize() :
bdsg::HashGraph::node_t
,
bdsg::HashGraph::path_t
,
handlegraph::SerializableHandleGraph
,
vg::VG
deserialize_members() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::SerializableHandleGraph
,
xg::XG
destroy_edge() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::DeletableHandleGraph
,
vg::VG
destroy_handle() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::DeletableHandleGraph
,
vg::VG
destroy_node() :
vg::VG
destroy_path() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::MutablePathHandleGraph
,
vg::VG
destroy_path_handle_records() :
bdsg::ODGI
destroy_progress() :
vg::Progressive
destroy_step() :
bdsg::ODGI
dfs() :
vg::FlowSort
,
vg::VG
dfs_gbwt() :
vg::MinimizerMapper
dice_nodes() :
vg::VG
DinucleotideMachine() :
vg::DinucleotideMachine
discard_bytes() :
vg::io::StreamMultiplexer
discard_to_breakpoint() :
vg::io::StreamMultiplexer
discordance_score() :
vg::SRPE
discrete_distribution() :
vg::discrete_distribution< T >
discrete_uniform_sample() :
vg::SnarlManager
disjoint() :
haplo::int_itvl_t
disjoint_subgraphs() :
vg::VG
display() :
bdsg::ODGI
,
vg::AlignmentChainModel
,
vg::MEMChainModel
display_dot() :
vg::AlignmentChainModel
,
vg::MEMChainModel
dist_to_common_ancestor() :
vg::MinimumDistanceIndex
dist_to_ends() :
vg::MinimumDistanceIndex::SnarlIndex
distance() :
vg::MultipathMapper
distance_between() :
vg::MinimizerMapper
,
vg::MultipathMapper
distance_between_positions() :
vg::Filter
distance_from_start() :
vg::IncrementalSubgraph
divide_handle() :
bdsg::HashGraph
,
bdsg::ODGI
,
bdsg::PackedGraph
,
handlegraph::MutableHandleGraph
,
vg::VG
divide_mapping() :
vg::Paths
divide_node() :
vg::VG
divide_path() :
vg::VG
do_poa() :
vg::DozeuInterface
DozeuPinningOverlay() :
vg::DozeuPinningOverlay
DPScoreComparator() :
vg::MEMClusterer::DPScoreComparator
draw() :
vg::Viz
draw_graph() :
vg::Viz
drop_prefix() :
vg::BitString
dump() :
vg::GenomeState
,
vg::Index
,
vg::SnarlState
dump_debug_extension_set() :
vg::MinimizerMapper
dump_debug_minimizers() :
vg::MinimizerMapper
dump_debug_sequence() :
vg::MinimizerMapper
dump_to_stream() :
xg::XG
duplication_filter() :
vg::Filter
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