vg
tools for working with variation graphs
vg
IndexManager
vg::IndexManager Member List
This is the complete list of members for
vg::IndexManager
, including all inherited members.
basename
vg::IndexManager
protected
can_get
(IndexHolderType &member, const string &filename_override, const string &extension, const function< bool(void)> &poll_dependencies) const
vg::IndexManager
protected
can_get_distance
() const
vg::IndexManager
can_get_gbwt
() const
vg::IndexManager
can_get_gbwtgraph
() const
vg::IndexManager
can_get_graph
() const
vg::IndexManager
can_get_minimizer
() const
vg::IndexManager
can_get_snarls
() const
vg::IndexManager
create_progress
(const string &message, long count)
vg::Progressive
create_progress
(long count)
vg::Progressive
destroy_progress
(void)
vg::Progressive
distance
vg::IndexManager
protected
distance_override
vg::IndexManager
protected
ensure
(IndexHolderType &member, const string &filename_override, const string &extension, const function< void(ifstream &)> &load, const function< void(ofstream &)> &make_and_save)
vg::IndexManager
protected
ensure_distance
()
vg::IndexManager
protected
ensure_gbwt
()
vg::IndexManager
protected
ensure_gbwtgraph
()
vg::IndexManager
protected
ensure_graph
()
vg::IndexManager
protected
ensure_minimizer
()
vg::IndexManager
protected
ensure_snarls
()
vg::IndexManager
protected
fasta_filename
vg::IndexManager
protected
gbwt
vg::IndexManager
protected
gbwt_override
vg::IndexManager
protected
gbwtgraph
vg::IndexManager
protected
gbwtgraph_override
vg::IndexManager
protected
get_distance
()
vg::IndexManager
get_filename
(const string &extension) const
vg::IndexManager
protected
get_gbwt
()
vg::IndexManager
get_gbwtgraph
()
vg::IndexManager
get_graph
()
vg::IndexManager
get_minimizer
()
vg::IndexManager
get_snarls
()
vg::IndexManager
graph
vg::IndexManager
protected
graph_override
vg::IndexManager
protected
increment_progress
()
vg::Progressive
IndexManager
(const string &fasta_filename="", const string &vcf_filename="")
vg::IndexManager
last_progress
vg::Progressive
private
minimizer
vg::IndexManager
protected
minimizer_k
vg::IndexManager
static
minimizer_override
vg::IndexManager
protected
minimizer_w
vg::IndexManager
static
preload_progress
(const string &message)
vg::Progressive
progress
vg::Progressive
private
progress_count
vg::Progressive
private
progress_message
vg::Progressive
private
progress_seen
vg::Progressive
private
set_distance_override
(const string &filename)
vg::IndexManager
set_fasta_filename
(const string &filename)
vg::IndexManager
set_gbwt_override
(const string &filename)
vg::IndexManager
set_gbwtgraph_override
(const string &filename)
vg::IndexManager
set_graph_override
(const string &filename)
vg::IndexManager
set_minimizer_override
(const string &filename)
vg::IndexManager
set_snarls_override
(const string &filename)
vg::IndexManager
set_vcf_filename
(const string &filename)
vg::IndexManager
show_progress
vg::Progressive
snarls
vg::IndexManager
protected
snarls_override
vg::IndexManager
protected
update_progress
(long i)
vg::Progressive
vcf_filename
vg::IndexManager
protected
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