vg
tools for working with variation graphs
vg::MinimumDistanceIndex::ChainIndex Member List

This is the complete list of members for vg::MinimumDistanceIndex::ChainIndex, including all inherited members.

chain_distance(pair< size_t, bool > start, pair< size_t, bool > end, int64_t startLen, int64_t endLen, bool check_loop=false) constvg::MinimumDistanceIndex::ChainIndex
chain_length() constvg::MinimumDistanceIndex::ChainIndexinline
chain_to_json()vg::MinimumDistanceIndex::ChainIndex
ChainIndex(id_t parent_id, id_t id_in_parent, id_t end_id, bool rev_in_parent, bool loops, size_t length)vg::MinimumDistanceIndex::ChainIndex
ChainIndex()vg::MinimumDistanceIndex::ChainIndex
end_idvg::MinimumDistanceIndex::ChainIndexprotected
id_in_parentvg::MinimumDistanceIndex::ChainIndexprotected
is_looping_chainvg::MinimumDistanceIndex::ChainIndexprotected
load(istream &in)vg::MinimumDistanceIndex::ChainIndex
loop_distance(pair< size_t, bool > start, pair< size_t, bool > end, int64_t startLen, int64_t endLen) constvg::MinimumDistanceIndex::ChainIndexprotected
loop_fdvg::MinimumDistanceIndex::ChainIndexprotected
loop_revvg::MinimumDistanceIndex::ChainIndexprotected
max_widthvg::MinimumDistanceIndex::ChainIndexprotected
MinimumDistanceIndex classvg::MinimumDistanceIndex::ChainIndexfriend
parent_idvg::MinimumDistanceIndex::ChainIndexprotected
prefix_sumvg::MinimumDistanceIndex::ChainIndexprotected
print_self() constvg::MinimumDistanceIndex::ChainIndex
rev_in_parentvg::MinimumDistanceIndex::ChainIndexprotected
serialize(ostream &out) constvg::MinimumDistanceIndex::ChainIndex
SnarlSeedClusterer classvg::MinimumDistanceIndex::ChainIndexfriend