Here is a list of all class members with links to the classes they belong to:
- t -
- tag
: vg::io::ProtobufEmitter< T >
- tag_correct()
: vg::Funnel
- tag_to_loader
: vg::io::Registry::Tables
- tag_to_protobuf
: vg::io::Registry::Tables
- TaggedMessage
: vg::io::MessageIterator
- tail
: bdsg::HashGraph::path_t
- tail_gap_memo_max_size
: vg::MultipathAlignmentGraph
- tail_nodes()
: vg::VG
- tail_offset()
: vg::GaplessExtension
- tail_position()
: vg::GaplessExtension
- take()
: vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
- TargetValueSearch()
: vg::TargetValueSearch
- task_name
: vg::Watchdog::thread_state_t
- Tell()
: vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream
- tell_group()
: vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
- telomere_pair
: vg::SwapHaplotypesCommand
- telomeres
: vg::GenomeState
- test_mean
: vg::BenchmarkResult
- test_splice_candidates()
: vg::MultipathMapper
- test_stddev
: vg::BenchmarkResult
- thin_alignment_cutoff
: vg::VariantAdder
- thread_breakpoint_cursors
: vg::io::StreamMultiplexer
- thread_extension
: vg::Mapper
- thread_queue_byte_counts
: vg::io::StreamMultiplexer
- thread_queue_empty_slots
: vg::io::StreamMultiplexer
- thread_queue_filled_slots
: vg::io::StreamMultiplexer
- thread_queue_mutexes
: vg::io::StreamMultiplexer
- thread_queues
: vg::io::StreamMultiplexer
- thread_streams
: vg::io::StreamMultiplexer
- threads
: vg::Index
, vg::ReadFilter
- tick()
: vg::Range< Number >
- tick_chain()
: vg::Range< Number >
- tick_chain_parent
: vg::Range< Number >
- tighten()
: bdsg::PackedGraph
- time_point
: vg::Watchdog
- time_used
: vg::Alignment
- timed_out
: vg::Watchdog::thread_state_t
- timeout
: vg::Watchdog
- TipAnchoredMaxDistance()
: vg::TipAnchoredMaxDistance
- tmpfstream_locks
: vg::Packer
- tmpfstreams
: vg::Packer
- to
: vg::Alignment
, vg::Edge
, vg::Translation
- to_backing()
: vg::ExtraNodeGraph
, vg::SourceSinkOverlay
- to_big_endian()
: vg::endianness< IntType >
- to_correct
: vg::Alignment
- to_dot()
: vg::Funnel
, vg::IntegratedSnarlFinder::MergedAdjacencyGraph
, vg::MultipathAlignmentGraph
, vg::VG
- to_end
: vg::Edge
- to_gfa()
: bdsg::ODGI
, xg::XG
- to_graph()
: vg::Paths
- to_idx
: vg::MEMClusterer::HitEdge
- to_json()
: vg::Paths
- to_length
: vg::Edit
, vg::edit_t
- to_mapping()
: vg::mapping_t
- to_matrix
: vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- to_node_id
: vg::BandedGlobalAligner< IntType >::AltTracebackStack::Deflection
- to_number()
: vg::BitString
- to_path()
: vg::GaplessExtension
, vg::MinimizerMapper
- to_seed()
: vg::GaplessExtender
- to_simple_reverse()
: vg::FlowSort
- to_simple_reverse_orientation()
: vg::FlowSort
- to_string()
: vg::BREAKPOINT
- to_swap
: vg::SwapHaplotypesCommand
- to_tuple()
: vg::io::VPKG
- to_turtle()
: vg::VG
- to_visit()
: vg::NodeSide
- to_xg()
: vg::VGset
- toggle_bit()
: handlegraph::number_bool_packing
- top
: haplo::int_itvl_t
- top_border
: vg::Viz
- top_diag
: vg::BandedGlobalAligner< IntType >::BAMatrix
- top_down_genotype()
: vg::LegacyCaller
- top_k
: vg::PoissonSupportSnarlCaller
- top_level_chain_length()
: vg::MinimumDistanceIndex
- top_level_seed_clusters
: vg::SnarlSeedClusterer::TreeState
- top_level_snarls()
: vg::SnarlManager
- top_m
: vg::PoissonSupportSnarlCaller
- top_tracebacks
: vg::MultipathMapper
- topological_order
: vg::BandedGlobalAligner< IntType >
, vg::MEMClusterer::HitGraph
- topological_sort()
: vg::MultipathAlignmentGraph
- TOTAL_BITS
: vg::BitString
- total_node_quality()
: vg::Packer
- total_seq_length
: vg::BaseMapper
, vg::NGSSimulator
, vg::Sampler
- total_supports()
: vg::BREAKPOINT
- trace()
: vg::DozeuInterface
, vg::QualAdjXdropAligner
, vg::SnarlState
, vg::XdropAligner
- trace_haplotype()
: vg::GenomeState
- traceback()
: vg::AlignmentChainModel
, vg::BandedGlobalAligner< IntType >::BAMatrix
, vg::BandedGlobalAligner< IntType >
, vg::MEMChainModel
- traceback_over_edge()
: vg::BandedGlobalAligner< IntType >::BAMatrix
- track_components
: vg::MEMClusterer::HitGraph
- track_correctness
: vg::MinimizerMapper
- track_provenance
: vg::MinimizerMapper
- Transcript()
: vg::Transcript
- transcript_origin
: vg::TranscriptPath
- transcript_paths()
: vg::Transcriptome
- transcript_tag
: vg::Transcriptome
- Transcriptome()
: vg::Transcriptome
- TranscriptPath()
: vg::TranscriptPath
- transform()
: vg::VGset
- transform_alignment()
: vg::GaplessExtender
- transition_distrs_1
: vg::NGSSimulator
- transition_distrs_2
: vg::NGSSimulator
- transition_table
: vg::DinucleotideMachine
- transitive_reduction()
: vg::Surjector
- translate()
: vg::Translator
- translate_down()
: vg::PathSubgraph
, vg::TreeSubgraph
- translate_node_ids()
: vg::JoinedSpliceGraph
- translations
: vg::Translator
- translator
: vg::AugmentedGraph
, vg::Genotyper
, vg::Homogenizer
- Translator()
: vg::Translator
- trav
: vg::MCMCCaller
- trav_finder
: vg::Deconstructor
- trav_padding
: vg::GAFOutputCaller
- trav_sequence()
: vg::VG
- traversal
: vg::mapping_t
- traversal_alg
: vg::Genotyper
- traversal_entry_to_string()
: vg::Index
- traversal_finder
: vg::FlowCaller
, vg::LegacyCaller
, vg::SmallSnarlSimplifier
, vg::VCFGenotyper
- TraversalAlg
: vg::Genotyper
- traversals_only
: vg::FlowCaller
, vg::VCFGenotyper
- TraversalSupportFinder()
: vg::TraversalSupportFinder
- traverse_computed_decomposition()
: vg::IntegratedSnarlFinder
- traverse_decomposition()
: vg::HandleGraphSnarlFinder
, vg::IntegratedSnarlFinder
- traverse_edge_handle()
: bdsg::ODGI
, handlegraph::HandleGraph
- traverse_in_order()
: vg::BitStringTree< Item >
, vg::BitStringTree< Item >::TreeNode
- traverse_left()
: vg::Paths
- traverse_right()
: vg::Paths
- traverse_up()
: vg::BitStringTree< Item >
, vg::BitStringTree< Item >::TreeNode
- travs_from()
: vg::VG
- travs_of()
: vg::VG
- travs_to()
: vg::VG
- Tree()
: vg::Tree< T >
- tree
: vg::TreeSubgraph
- tree_depth
: vg::MinimumDistanceIndex
- TreeNode()
: vg::TreeNode< T >
- TreeState()
: vg::SnarlSeedClusterer::TreeState
- TreeSubgraph()
: vg::TreeSubgraph
- trim_ambiguous_end()
: vg::ReadFilter
- trim_ambiguous_ends()
: vg::ReadFilter
- trim_and_check_for_empty()
: vg::MultipathAlignmentGraph
- trim_hanging_indels()
: vg::MultipathAlignmentGraph
- trim_indels
: vg::Constructor
- trim_to_branch_points()
: vg::MultipathAlignmentGraph
- trim_to_variable()
: vg::Constructor
- TrivialTraversalFinder()
: vg::TrivialTraversalFinder
- try_load_one()
: vg::io::VPKG
- TSVAlignmentEmitter()
: vg::io::TSVAlignmentEmitter
- tumor_supports
: vg::BREAKPOINT
- tv_path()
: vg::TargetValueSearch
- tv_path_exists()
: vg::TargetValueSearch
- tv_path_length()
: vg::TargetValueSearch
- tv_phase2()
: vg::TargetValueSearch
- tvs
: vg::TVSClusterer
- TVSClusterer()
: vg::TVSClusterer
- type
: vg::GFFRecord
, vg::Range< Number >
, vg::Snarl
- type_to_bare_loaders
: vg::io::Registry::Tables
- type_to_saver
: vg::io::Registry::Tables
- typeToString()
: vg::SnarlSeedClusterer