vg
tools for working with variation graphs
- l -
lane :
vg::ReplaceSnarlHaplotypeCommand
large_alignment_band_padding :
vg::VariantAdder
larger_prime :
vg::ShuffledPairs
last :
bdsg::ODGI::path_metadata_t
,
vg::FeatureSet::Feature
last_checkin :
vg::Watchdog::thread_state_t
last_group_min_id :
vg::StreamIndexBase
last_node_length :
vg::PathIndex
last_progress :
vg::Progressive
layout_order :
vg::DagifiedGraph
lcp :
vg::BaseMapper
lcp_ind :
vg::Filter
left :
vg::Support
left_border :
vg::Viz
left_edges :
bdsg::HashGraph::node_t
left_ends :
vg::ConstructedChunk
left_full :
vg::GaplessExtension
left_handle_trans :
vg::JoinedSpliceGraph
left_maximal :
vg::GaplessExtension
left_splice_offset :
vg::JoinedSpliceGraph
left_subgraph :
vg::JoinedSpliceGraph
left_telomere_node :
vg::PhasedGenome::Haplotype
length :
bdsg::ODGI::path_metadata_t
,
haplo::haplo_DP_column
,
haplo::hDP_gbwt_graph_accessor< GBWTType >
,
vg::mapping_t
,
vg::MinimizerMapper::Minimizer
,
vg::Path
,
vg::walk_t
LENGTH_MASK :
vg::MIPayload
LENGTH_WIDTH :
vg::MIPayload
lengths :
vg::FragmentLengthDistribution
likelihood :
vg::Genotype
likelihood_ln :
vg::Genotyper::Affinity
links_iv :
bdsg::PackedGraph::PackedPath
locked_nodes :
vg::GraphSynchronizer::Lock
,
vg::GraphSynchronizer
locus :
vg::Alignment
log_base :
vg::GSSWAligner
log_continue_probability :
haplo::haploMath::RRMemo
log_likelihood :
vg::Genotype
log_likelihood_approx_factor :
vg::MultipathMapper
log_posterior :
vg::Genotype
log_prior :
vg::Genotype
logS_bases :
haplo::haploMath::RRMemo
logT_base :
haplo::haploMath::RRMemo
long_opt :
vg::BaseOption< Value, Parser >
long_options :
vg::ConfigurableParser
long_options_used :
vg::ConfigurableParser
loop_fd :
vg::MinimumDistanceIndex::ChainIndex
loop_rev :
vg::MinimumDistanceIndex::ChainIndex
lower_bound :
vg::BREAKPOINT
lower_bound_heuristic :
vg::TargetValueSearch
lowercase_warned_alt :
vg::Constructor
lowercase_warned_sequences :
vg::Constructor
lru_cache_size :
vg::Packer
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