vg
tools for working with variation graphs
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#include <minimizer_mapper.hpp>
Public Member Functions | |
bool | operator< (const Minimizer &another) const |
size_t | forward_offset () const |
size_t | window_size () const |
How many bases are in a window for which a minimizer is chosen? More... | |
size_t | agglomeration_window_count () const |
How many different windows are in this minimizer's agglomeration? More... | |
Public Attributes | |
gbwtgraph::DefaultMinimizerIndex::minimizer_type | value |
size_t | agglomeration_start |
size_t | agglomeration_length |
size_t | hits |
const gbwtgraph::hit_type * | occs |
int32_t | length |
int32_t | candidates_per_window |
double | score |
We define our own type for minimizers, to use during mapping and to pass around between our internal functions.
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How many different windows are in this minimizer's agglomeration?
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Get the starting position of the given minimizer on the forward strand. Use this instead of value.offset which can really be the last base for reverse strand minimizers.
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How many bases are in a window for which a minimizer is chosen?
size_t vg::MinimizerMapper::Minimizer::agglomeration_length |
size_t vg::MinimizerMapper::Minimizer::agglomeration_start |
int32_t vg::MinimizerMapper::Minimizer::candidates_per_window |
size_t vg::MinimizerMapper::Minimizer::hits |
int32_t vg::MinimizerMapper::Minimizer::length |
const gbwtgraph::hit_type* vg::MinimizerMapper::Minimizer::occs |
double vg::MinimizerMapper::Minimizer::score |
gbwtgraph::DefaultMinimizerIndex::minimizer_type vg::MinimizerMapper::Minimizer::value |