vg
tools for working with variation graphs
|
This is the complete list of members for vg::VCFOutputCaller, including all inherited members.
add_variant(vcflib::Variant &var) const | vg::VCFOutputCaller | |
emit_variant(const PathPositionHandleGraph &graph, SnarlCaller &snarl_caller, const Snarl &snarl, const vector< SnarlTraversal > &called_traversals, const vector< int > &genotype, int ref_trav_idx, const unique_ptr< SnarlCaller::CallInfo > &call_info, const string &ref_path_name, int ref_offset, bool genotype_snarls) const | vg::VCFOutputCaller | protected |
flatten_common_allele_ends(vcflib::Variant &variant, bool backward, size_t len_override) const | vg::VCFOutputCaller | protected |
get_ref_interval(const PathPositionHandleGraph &graph, const Snarl &snarl, const string &ref_path_name) const | vg::VCFOutputCaller | protected |
max_uncalled_alleles | vg::VCFOutputCaller | protected |
output_variants | vg::VCFOutputCaller | mutableprotected |
output_vcf | vg::VCFOutputCaller | mutableprotected |
sample_name | vg::VCFOutputCaller | protected |
vcf_header(const PathHandleGraph &graph, const vector< string > &contigs, const vector< size_t > &contig_length_overrides) const | vg::VCFOutputCaller | virtual |
VCFOutputCaller(const string &sample_name) | vg::VCFOutputCaller | |
write_variants(ostream &out_stream) const | vg::VCFOutputCaller | |
~VCFOutputCaller() | vg::VCFOutputCaller | virtual |