vg
tools for working with variation graphs
- t -
tag_correct() :
vg::Funnel
tail_nodes() :
vg::VG
tail_offset() :
vg::GaplessExtension
tail_position() :
vg::GaplessExtension
take() :
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
TargetValueSearch() :
vg::TargetValueSearch
Tell() :
vg::io::BlockedGzipInputStream
,
vg::io::BlockedGzipOutputStream
tell_group() :
vg::io::MessageIterator
,
vg::io::ProtobufIterator< T >
test_splice_candidates() :
vg::MultipathMapper
tick() :
vg::Range< Number >
tick_chain() :
vg::Range< Number >
tighten() :
bdsg::PackedGraph
TipAnchoredMaxDistance() :
vg::TipAnchoredMaxDistance
to_backing() :
vg::ExtraNodeGraph
,
vg::SourceSinkOverlay
to_big_endian() :
vg::endianness< IntType >
to_dot() :
vg::Funnel
,
vg::IntegratedSnarlFinder::MergedAdjacencyGraph
,
vg::MultipathAlignmentGraph
,
vg::VG
to_gfa() :
bdsg::ODGI
,
xg::XG
to_graph() :
vg::Paths
to_json() :
vg::Paths
to_length() :
vg::edit_t
to_mapping() :
vg::mapping_t
to_number() :
vg::BitString
to_path() :
vg::GaplessExtension
,
vg::MinimizerMapper
to_seed() :
vg::GaplessExtender
to_simple_reverse() :
vg::FlowSort
to_simple_reverse_orientation() :
vg::FlowSort
to_string() :
vg::BREAKPOINT
to_tuple() :
vg::io::VPKG
to_turtle() :
vg::VG
to_visit() :
vg::NodeSide
to_xg() :
vg::VGset
toggle_bit() :
handlegraph::number_bool_packing
top_down_genotype() :
vg::LegacyCaller
top_level_chain_length() :
vg::MinimumDistanceIndex
top_level_snarls() :
vg::SnarlManager
topological_order() :
vg::MEMClusterer::HitGraph
topological_sort() :
vg::MultipathAlignmentGraph
total_node_quality() :
vg::Packer
total_supports() :
vg::BREAKPOINT
trace() :
vg::DozeuInterface
,
vg::QualAdjXdropAligner
,
vg::SnarlState
,
vg::XdropAligner
trace_haplotype() :
vg::GenomeState
traceback() :
vg::AlignmentChainModel
,
vg::BandedGlobalAligner< IntType >::BAMatrix
,
vg::BandedGlobalAligner< IntType >
,
vg::MEMChainModel
traceback_over_edge() :
vg::BandedGlobalAligner< IntType >::BAMatrix
Transcript() :
vg::Transcript
transcript_paths() :
vg::Transcriptome
Transcriptome() :
vg::Transcriptome
TranscriptPath() :
vg::TranscriptPath
transform() :
vg::VGset
transform_alignment() :
vg::GaplessExtender
transitive_reduction() :
vg::Surjector
translate() :
vg::Translator
translate_down() :
vg::PathSubgraph
,
vg::TreeSubgraph
translate_node_ids() :
vg::JoinedSpliceGraph
Translator() :
vg::Translator
trav_sequence() :
vg::VG
traversal_entry_to_string() :
vg::Index
TraversalSupportFinder() :
vg::TraversalSupportFinder
traverse_computed_decomposition() :
vg::IntegratedSnarlFinder
traverse_decomposition() :
vg::HandleGraphSnarlFinder
,
vg::IntegratedSnarlFinder
traverse_edge_handle() :
bdsg::ODGI
,
handlegraph::HandleGraph
traverse_in_order() :
vg::BitStringTree< Item >
,
vg::BitStringTree< Item >::TreeNode
traverse_left() :
vg::Paths
traverse_right() :
vg::Paths
traverse_up() :
vg::BitStringTree< Item >
,
vg::BitStringTree< Item >::TreeNode
travs_from() :
vg::VG
travs_of() :
vg::VG
travs_to() :
vg::VG
Tree() :
vg::Tree< T >
TreeNode() :
vg::TreeNode< T >
TreeState() :
vg::SnarlSeedClusterer::TreeState
TreeSubgraph() :
vg::TreeSubgraph
trim_ambiguous_end() :
vg::ReadFilter
trim_ambiguous_ends() :
vg::ReadFilter
trim_and_check_for_empty() :
vg::MultipathAlignmentGraph
trim_hanging_indels() :
vg::MultipathAlignmentGraph
trim_to_branch_points() :
vg::MultipathAlignmentGraph
trim_to_variable() :
vg::Constructor
TrivialTraversalFinder() :
vg::TrivialTraversalFinder
try_load_one() :
vg::io::VPKG
TSVAlignmentEmitter() :
vg::io::TSVAlignmentEmitter
tv_path() :
vg::TargetValueSearch
tv_path_exists() :
vg::TargetValueSearch
tv_path_length() :
vg::TargetValueSearch
tv_phase2() :
vg::TargetValueSearch
TVSClusterer() :
vg::TVSClusterer
typeToString() :
vg::SnarlSeedClusterer
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