vg
tools for working with variation graphs
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#include <vector>
#include <string>
#include <ostream>
#include <sstream>
#include "genotypekit.hpp"
#include "Variant.h"
#include "handle.hpp"
#include "traversal_finder.hpp"
Classes | |
class | vg::Deconstructor |
Namespaces | |
vg | |
Deconstruct is getting rewritten. New functionality: -Detect superbubbles and bubbles -Fix command line interface. -harmonize on XG / raw graph (i.e. deprecate index) -Use unroll/DAGify if needed to avoid cycles
Much of this is taken from Brankovic's "Linear-Time Superbubble Identification Algorithm for Genome Assembly"